Algorithms on Sequences
Algorithms on Sequences
Algorithms on Sequences
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Dotter : a tool for dot plots<br />
• Karolinska Institutet, unix<br />
& windows versi<strong>on</strong>s<br />
ftp://ftp.cgr.ki.se/pub/esr<br />
/dotter/<br />
• Complexity : linear for<br />
space, quadratic for time<br />
(15 mn for 30000x30000)<br />
« A dot-matrix program with dynamic<br />
theshold c<strong>on</strong>trol suited for genomic DNA and<br />
protein sequences » E. S<strong>on</strong>nhammer R. Durbin<br />
Gene 167: GC1-10 1995
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