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Omega Redux

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<strong>Omega</strong>2 Builder<br />

• Fragment molecule by cleaving σ-bonds<br />

– Exocyclic attachments<br />

– Carbon-heteroatom bonds<br />

– Preserve conjugation<br />

• Generate and store fragment conformers<br />

using makefraglib (fraglib.sdf)<br />

• Generate models by assembling on-disk<br />

fragments<br />

• Enumerate ring conformers using templates<br />

• Enumerate invertible nitrogens<br />

CUP VI, February 2004

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