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Abstract Book of EAVLD2012 - eavld congress 2012

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S1 - P - 32<br />

RELIABLE DETECTION AND TYPING OF PRRSV USING MULTIPLEX REAL-TIME RT-PCR<br />

Christine Gaunitz, Carsten Schroeder, Marco Labitzke, Eva V. Knoop, Jörg Gabert<br />

Labor Diagnostik GmbH Leipzig, Leipzig, Germany<br />

PRRSV, High Pathogenic, real-time RT-PCR, simultaneous detection<br />

Introduction<br />

Infections with the Porcine Reproductive and Respiratory<br />

Syndrome Virus (PRRSV) in swine are very prevalent and<br />

economically most important for the swine industry. Clinical signs<br />

are respiratory disease in piglets and reproductive failure in<br />

pregnant sows.<br />

PRRSV is a single-stranded RNA virus <strong>of</strong> the family Arteriviridae,<br />

order Nidovirales, and classified into the European (EU/I) and<br />

North American (NA/II) genotype. These genotypes show only<br />

55-70 % homology <strong>of</strong> nucleotides in the different genes. In 2006<br />

in China a highly pathogenic (HP) NA-strain emerged, which<br />

shows a deletion <strong>of</strong> around 30 amino acids in the non-structural<br />

protein 2 (Nsp2). Infection with the HP-strain is characterized by<br />

high fever and high mortality in pigs <strong>of</strong> all ages. In the last years<br />

there have been detected also new isolates from Eastern Europe.<br />

Purpose <strong>of</strong> this study was to develop a real-time PCR which<br />

allows reliable detection and differentiation <strong>of</strong> PRRSV strains in<br />

one test run.<br />

Materials & methods<br />

To evaluate analytical sensitivity <strong>of</strong> VIROTYPE ® PRRSV, titration<br />

studies with in-vitro RNA were performed.<br />

Analytical specificity was proven by testing 12 PRRSV reference<br />

strains from cell culture.<br />

Diagnostic sensitivity was proven by testing the EPIZONE ring<br />

trial panel 2011.<br />

Serum, tissue and saliva samples were tested in comparison to<br />

other PCR assays. Two commercial PCR kits and VIROTYPE ®<br />

PRRSV (Labor Diagnostik GmbH Leipzig, Germany) were used<br />

according to the manufacturer´s recommendations.<br />

Results<br />

The high analytical sensitivity <strong>of</strong> the VIROTYPE ® PRRSV kit was<br />

proven by a titration series <strong>of</strong> in vitro RNA (PRRSV<br />

EU1/EU2/NA/HP [10 8 copies/well to 10 copies/well]), performed<br />

in triplicates <strong>of</strong> ten-fold dilutions. A high correlation between<br />

number <strong>of</strong> copies and amount <strong>of</strong> amplification product was<br />

demonstrated in the range <strong>of</strong> 10 8 to 10 3 and 10 8 to 10 2 copies,<br />

respectively (Fig. 1).<br />

PRRSV EU I<br />

PRRSV NA<br />

Figure 1: Evaluation <strong>of</strong> analytical sensitivity.<br />

PRRSV EU II<br />

PRRSV HP<br />

The analytical specificity was proven by testing a RNA-panel <strong>of</strong><br />

12 PRRSV reference strains comparatively with VIROTYPE ®<br />

PRRSV and two commercial available tests (Test I and Test II).<br />

All reference strains were detected well with the VIROTYPE ®<br />

PRRSV. In comparison to Test II, the VIROTYPE ®<br />

PRRSV kit<br />

detects the EU strains around two Ct-values and the NA strains<br />

around five Ct-values more sensitive. The results <strong>of</strong> commercial<br />

test I and VIROTYPE ® PRRSV are comparable (Tab. 1).<br />

Table 1: Evaluation <strong>of</strong> analytical specificity.<br />

VIROTYPE ® PRRSV commercial Test I commercial Test II<br />

Strain<br />

EU NA HP IC PRRSV EU NA IC EU NA IC<br />

Ct<br />

FAM<br />

Ct<br />

TEX<br />

Ct<br />

Cy5<br />

Ct<br />

HEX<br />

Ct<br />

FAM<br />

Ct<br />

FAM<br />

Ct<br />

FAM<br />

Ct HEX<br />

Ct<br />

FAM<br />

Ct<br />

Cy5<br />

Ct<br />

HEX<br />

EU Stendal V953 25.22 - - 34.61 24.62 24.08 - 29.89 24.95 - 35.66<br />

Intervet 22.02 - - 33.22 20.41 19.41 - 28.85 24.65 - -<br />

Cobbelsdorf 23.86 - - 32.65 22.91 22.20 - 29.32 26.02 - -<br />

Stendal V852 23.24 - - 39.96 23.50 21.86 29.68 26.16 - 36.98<br />

Stendal V1904 24.30 - - 39.06 24.48 23.47 29.30 27.63 - 37.41<br />

Stendal V1952/97 26.29 - - 35.41 26.32 24.51 31.32 28.12 - 36.06<br />

Stendal V1445/99 - 21.39 - 34.85 23.80 - 21.17 30.78 - 24.92 34.10<br />

USA VD28775/2 - 21.35 - 29.14 23.94 - 21.61 30.40 - 24.07 39.08<br />

USA VD29949/17 - 22.41 - 28.48 27.72 - 22.18 29.65 - 26.89 -<br />

USA 2 - 19.83 - 30.64 23.07 - 20.44 30.81 - 23.64 -<br />

USA 18 - 19.06 - 31.48 20.47 - 19.50 30.39 - 26.54 -<br />

China - 20.87 22.44 28.36 22.82 - 20.54 29.89 - 25.84 -<br />

Mean Value EU 24.16 23.71 22.59 26.26<br />

Mean Value NA 20.82 23.64 20.91 25.32<br />

In comparison to an in-house PCR (Kleiboeker mod.) performed<br />

at Friedrich-Loeffler-Institute, VIROTYPE ®<br />

PRRSV detects all<br />

samples <strong>of</strong> the Epizone Ring Trial 2011 more sensitive.<br />

VIROTYPE ®<br />

PRRSV reliably detects the samples <strong>of</strong> the EU-2,<br />

EU-3, EU-4 and the atypical EU genotype 1 (Tab. 2).<br />

Table 2: Results from the EPIZONE ring trial panel 2011.<br />

VIROTYPE® PRRSV Kleiboeker (mod.)<br />

PRRSV-strain Genotyp RNA Dil. EU NA HP IC EU NA<br />

EU Stendal V954 EU-1 10 -2 24.96 - - 26.88 28.24 -<br />

EU Stendal V954 EU-1 10 -3 28.41 - - 27.06 31.53 -<br />

EU Stendal V954 EU-1 10 -4 31.61 - - 26.91 34.12 -<br />

EU Stendal V954 EU-1 10 -5 34.63 - - 27.14 37.61 -<br />

EU Stendal V954 EU-1 10 -6 - - - 28.11 - -<br />

EU Stendal V1952/97 EU-1 10 -1 23.08 - - 27.23 25.82 -<br />

EU Stendal V1952/97 EU-1 10 -2 26.57 - - 27.66 29.17 -<br />

EU Stendal V1952/97 EU-1 10 -3 29.54 - - 26.99 32.19 -<br />

EU Stendal V1952/97 EU-1 10 -4 32.50 - - 26.86 35.25 -<br />

EU Stendal V1952/97 EU-1 10 -5 36.92 - - 27.87 40.31 -<br />

Cobbelsdorf EU-1 1:500 23.33 - - 27.26 26.13 -<br />

Stendal V852 EU-1 1:500 23.55 - - 27.54 25.78 -<br />

Stendal V1904 EU-1 1:500 24.37 - - 27.37 26.72 -<br />

Aus_LT3 EU-2 01:10 24.80 - - 27.59 25.93 -<br />

BY_Bor/59 EU (atypical) 01:10 32.81 - - 27.79 33.63 -<br />

BY_231/SZA EU-3 01:10 21.01 - - 27.74 23.78 -<br />

BY_8380/OKT_2p EU-4 01:10 25.70 - - 27.59 28.36 -<br />

China NA-HP 10 -2 - 20.01 22.14 26.22 - 21.83<br />

China NA-HP 10 -3 - 23.93 25.79 26.89 - 26.06<br />

China NA-HP 10 -4 - 27.61 29.25 27.56 - 28.43<br />

China NA-HP 10 -5 - 29.93 31.71 26.96 - 32.34<br />

China NA-HP 10 -6 - 37.1 34.96 27.50 - 35.20<br />

Stendal V1445/99 NA 1:500 - 21.63 - 27.22 - 23.17<br />

USA VD29949/17 NA 1:500 - 22.74 - 26.75 - 24.44<br />

USA 2 NA 1:500 - 21.12 - 27.51 - 22.43<br />

Mean Value 27.12 25.51 29.62 26.74<br />

Standard Deviation 4.19 5.77 4.17 4.88<br />

Discussion & conclusions<br />

To evaluate sensitivity and specificity <strong>of</strong> VIROTYPE ®<br />

PRRSV,<br />

titration studies with in-vitro RNA were performed. Serum, tissue<br />

and saliva samples were tested in comparison to other<br />

commercial PCR assays. Testing the EPIZONE PRRSV ring trial<br />

panel, all strains could be detected reliably. East European EU<br />

strains and the atypical EU strain scored positive.<br />

VIROTYPE ®<br />

PRRSV allows the reliable and simultaneously<br />

detection <strong>of</strong> PRRSV EU and NA genotype and the HP strain from<br />

porcine blood, serum, tissue, bronchial swabs, bronchial lavage,<br />

saliva, semen and also cell culture samples. The assay internal<br />

control guarantees the control <strong>of</strong> extraction as well as<br />

amplification. Due to the high sensitivity <strong>of</strong> VIROTYPE ® PRRSV<br />

pools <strong>of</strong> five samples can be tested. VIROTYPE ® PRRSV is easy<br />

to use with only one reaction-mix.<br />

Acknowledgements<br />

The EPIZONE ring trial panel and the panel <strong>of</strong> 12 PRRSV<br />

reference strains were kindly provided by K. Wernike and B.<br />

H<strong>of</strong>fmann, Federal Institute for Animal Health, Germany.<br />

References<br />

1. Wernike et al., Porcine reproductive and respiratory syndrome virus:<br />

inter-laboratory ring trial to evaluate real-time RT-PCR detection methods,<br />

submitted – under review

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