Abstract Book of EAVLD2012 - eavld congress 2012
Abstract Book of EAVLD2012 - eavld congress 2012
Abstract Book of EAVLD2012 - eavld congress 2012
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
S1 - P - 32<br />
RELIABLE DETECTION AND TYPING OF PRRSV USING MULTIPLEX REAL-TIME RT-PCR<br />
Christine Gaunitz, Carsten Schroeder, Marco Labitzke, Eva V. Knoop, Jörg Gabert<br />
Labor Diagnostik GmbH Leipzig, Leipzig, Germany<br />
PRRSV, High Pathogenic, real-time RT-PCR, simultaneous detection<br />
Introduction<br />
Infections with the Porcine Reproductive and Respiratory<br />
Syndrome Virus (PRRSV) in swine are very prevalent and<br />
economically most important for the swine industry. Clinical signs<br />
are respiratory disease in piglets and reproductive failure in<br />
pregnant sows.<br />
PRRSV is a single-stranded RNA virus <strong>of</strong> the family Arteriviridae,<br />
order Nidovirales, and classified into the European (EU/I) and<br />
North American (NA/II) genotype. These genotypes show only<br />
55-70 % homology <strong>of</strong> nucleotides in the different genes. In 2006<br />
in China a highly pathogenic (HP) NA-strain emerged, which<br />
shows a deletion <strong>of</strong> around 30 amino acids in the non-structural<br />
protein 2 (Nsp2). Infection with the HP-strain is characterized by<br />
high fever and high mortality in pigs <strong>of</strong> all ages. In the last years<br />
there have been detected also new isolates from Eastern Europe.<br />
Purpose <strong>of</strong> this study was to develop a real-time PCR which<br />
allows reliable detection and differentiation <strong>of</strong> PRRSV strains in<br />
one test run.<br />
Materials & methods<br />
To evaluate analytical sensitivity <strong>of</strong> VIROTYPE ® PRRSV, titration<br />
studies with in-vitro RNA were performed.<br />
Analytical specificity was proven by testing 12 PRRSV reference<br />
strains from cell culture.<br />
Diagnostic sensitivity was proven by testing the EPIZONE ring<br />
trial panel 2011.<br />
Serum, tissue and saliva samples were tested in comparison to<br />
other PCR assays. Two commercial PCR kits and VIROTYPE ®<br />
PRRSV (Labor Diagnostik GmbH Leipzig, Germany) were used<br />
according to the manufacturer´s recommendations.<br />
Results<br />
The high analytical sensitivity <strong>of</strong> the VIROTYPE ® PRRSV kit was<br />
proven by a titration series <strong>of</strong> in vitro RNA (PRRSV<br />
EU1/EU2/NA/HP [10 8 copies/well to 10 copies/well]), performed<br />
in triplicates <strong>of</strong> ten-fold dilutions. A high correlation between<br />
number <strong>of</strong> copies and amount <strong>of</strong> amplification product was<br />
demonstrated in the range <strong>of</strong> 10 8 to 10 3 and 10 8 to 10 2 copies,<br />
respectively (Fig. 1).<br />
PRRSV EU I<br />
PRRSV NA<br />
Figure 1: Evaluation <strong>of</strong> analytical sensitivity.<br />
PRRSV EU II<br />
PRRSV HP<br />
The analytical specificity was proven by testing a RNA-panel <strong>of</strong><br />
12 PRRSV reference strains comparatively with VIROTYPE ®<br />
PRRSV and two commercial available tests (Test I and Test II).<br />
All reference strains were detected well with the VIROTYPE ®<br />
PRRSV. In comparison to Test II, the VIROTYPE ®<br />
PRRSV kit<br />
detects the EU strains around two Ct-values and the NA strains<br />
around five Ct-values more sensitive. The results <strong>of</strong> commercial<br />
test I and VIROTYPE ® PRRSV are comparable (Tab. 1).<br />
Table 1: Evaluation <strong>of</strong> analytical specificity.<br />
VIROTYPE ® PRRSV commercial Test I commercial Test II<br />
Strain<br />
EU NA HP IC PRRSV EU NA IC EU NA IC<br />
Ct<br />
FAM<br />
Ct<br />
TEX<br />
Ct<br />
Cy5<br />
Ct<br />
HEX<br />
Ct<br />
FAM<br />
Ct<br />
FAM<br />
Ct<br />
FAM<br />
Ct HEX<br />
Ct<br />
FAM<br />
Ct<br />
Cy5<br />
Ct<br />
HEX<br />
EU Stendal V953 25.22 - - 34.61 24.62 24.08 - 29.89 24.95 - 35.66<br />
Intervet 22.02 - - 33.22 20.41 19.41 - 28.85 24.65 - -<br />
Cobbelsdorf 23.86 - - 32.65 22.91 22.20 - 29.32 26.02 - -<br />
Stendal V852 23.24 - - 39.96 23.50 21.86 29.68 26.16 - 36.98<br />
Stendal V1904 24.30 - - 39.06 24.48 23.47 29.30 27.63 - 37.41<br />
Stendal V1952/97 26.29 - - 35.41 26.32 24.51 31.32 28.12 - 36.06<br />
Stendal V1445/99 - 21.39 - 34.85 23.80 - 21.17 30.78 - 24.92 34.10<br />
USA VD28775/2 - 21.35 - 29.14 23.94 - 21.61 30.40 - 24.07 39.08<br />
USA VD29949/17 - 22.41 - 28.48 27.72 - 22.18 29.65 - 26.89 -<br />
USA 2 - 19.83 - 30.64 23.07 - 20.44 30.81 - 23.64 -<br />
USA 18 - 19.06 - 31.48 20.47 - 19.50 30.39 - 26.54 -<br />
China - 20.87 22.44 28.36 22.82 - 20.54 29.89 - 25.84 -<br />
Mean Value EU 24.16 23.71 22.59 26.26<br />
Mean Value NA 20.82 23.64 20.91 25.32<br />
In comparison to an in-house PCR (Kleiboeker mod.) performed<br />
at Friedrich-Loeffler-Institute, VIROTYPE ®<br />
PRRSV detects all<br />
samples <strong>of</strong> the Epizone Ring Trial 2011 more sensitive.<br />
VIROTYPE ®<br />
PRRSV reliably detects the samples <strong>of</strong> the EU-2,<br />
EU-3, EU-4 and the atypical EU genotype 1 (Tab. 2).<br />
Table 2: Results from the EPIZONE ring trial panel 2011.<br />
VIROTYPE® PRRSV Kleiboeker (mod.)<br />
PRRSV-strain Genotyp RNA Dil. EU NA HP IC EU NA<br />
EU Stendal V954 EU-1 10 -2 24.96 - - 26.88 28.24 -<br />
EU Stendal V954 EU-1 10 -3 28.41 - - 27.06 31.53 -<br />
EU Stendal V954 EU-1 10 -4 31.61 - - 26.91 34.12 -<br />
EU Stendal V954 EU-1 10 -5 34.63 - - 27.14 37.61 -<br />
EU Stendal V954 EU-1 10 -6 - - - 28.11 - -<br />
EU Stendal V1952/97 EU-1 10 -1 23.08 - - 27.23 25.82 -<br />
EU Stendal V1952/97 EU-1 10 -2 26.57 - - 27.66 29.17 -<br />
EU Stendal V1952/97 EU-1 10 -3 29.54 - - 26.99 32.19 -<br />
EU Stendal V1952/97 EU-1 10 -4 32.50 - - 26.86 35.25 -<br />
EU Stendal V1952/97 EU-1 10 -5 36.92 - - 27.87 40.31 -<br />
Cobbelsdorf EU-1 1:500 23.33 - - 27.26 26.13 -<br />
Stendal V852 EU-1 1:500 23.55 - - 27.54 25.78 -<br />
Stendal V1904 EU-1 1:500 24.37 - - 27.37 26.72 -<br />
Aus_LT3 EU-2 01:10 24.80 - - 27.59 25.93 -<br />
BY_Bor/59 EU (atypical) 01:10 32.81 - - 27.79 33.63 -<br />
BY_231/SZA EU-3 01:10 21.01 - - 27.74 23.78 -<br />
BY_8380/OKT_2p EU-4 01:10 25.70 - - 27.59 28.36 -<br />
China NA-HP 10 -2 - 20.01 22.14 26.22 - 21.83<br />
China NA-HP 10 -3 - 23.93 25.79 26.89 - 26.06<br />
China NA-HP 10 -4 - 27.61 29.25 27.56 - 28.43<br />
China NA-HP 10 -5 - 29.93 31.71 26.96 - 32.34<br />
China NA-HP 10 -6 - 37.1 34.96 27.50 - 35.20<br />
Stendal V1445/99 NA 1:500 - 21.63 - 27.22 - 23.17<br />
USA VD29949/17 NA 1:500 - 22.74 - 26.75 - 24.44<br />
USA 2 NA 1:500 - 21.12 - 27.51 - 22.43<br />
Mean Value 27.12 25.51 29.62 26.74<br />
Standard Deviation 4.19 5.77 4.17 4.88<br />
Discussion & conclusions<br />
To evaluate sensitivity and specificity <strong>of</strong> VIROTYPE ®<br />
PRRSV,<br />
titration studies with in-vitro RNA were performed. Serum, tissue<br />
and saliva samples were tested in comparison to other<br />
commercial PCR assays. Testing the EPIZONE PRRSV ring trial<br />
panel, all strains could be detected reliably. East European EU<br />
strains and the atypical EU strain scored positive.<br />
VIROTYPE ®<br />
PRRSV allows the reliable and simultaneously<br />
detection <strong>of</strong> PRRSV EU and NA genotype and the HP strain from<br />
porcine blood, serum, tissue, bronchial swabs, bronchial lavage,<br />
saliva, semen and also cell culture samples. The assay internal<br />
control guarantees the control <strong>of</strong> extraction as well as<br />
amplification. Due to the high sensitivity <strong>of</strong> VIROTYPE ® PRRSV<br />
pools <strong>of</strong> five samples can be tested. VIROTYPE ® PRRSV is easy<br />
to use with only one reaction-mix.<br />
Acknowledgements<br />
The EPIZONE ring trial panel and the panel <strong>of</strong> 12 PRRSV<br />
reference strains were kindly provided by K. Wernike and B.<br />
H<strong>of</strong>fmann, Federal Institute for Animal Health, Germany.<br />
References<br />
1. Wernike et al., Porcine reproductive and respiratory syndrome virus:<br />
inter-laboratory ring trial to evaluate real-time RT-PCR detection methods,<br />
submitted – under review