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Membrane sequestration

Membrane sequestration of DraG in A. brasilense 327 before affecting DraT/DraG activities (Nordlund, 2000). Despite the fact that the factors controlling DraT/DraG are not defined, it is very likely that they are similar in different organisms. This hypothesis is supported by data showing that heterologous expression of A. brasilense draTG in an R. rubrum mutant lacking DraT and/or DraG, and vice versa, restores switch-off control in the mutant (Zhang et al., 1995). Both DraT and DraG are active in cell extracts or when purified, leading to the hypothesis that these enzymes may be controlled by binding of labile or loosely bound negative regulators (Zhang et al., 1997). Likewise overexpression of R. rubrum DraG and A. brasilense DraT and DraG leads to constitutively active enzymes suggesting titration of negative regulators (Grunwald et al., 1995; Huergo et al., 2005). The DraG proteins from A. brasilense and R. rubrum have been found to be membrane-associated (Nordlund et al., 1977; Ljungstrom et al., 1989). Moreover, some R. rubrum DraG variants with an altered regulation also show altered membrane affinity, suggesting that membrane association may be a possible mechanism of DraG regulation (Kim et al., 2004). Proteins of the nitrogen signal transduction P II family and of the ammonia channel Amt family have been implicated in the regulation of DraT and DraG activities in several organisms. R. rubrum encodes three P II proteins (GlnB, GlnJ and GlnK) and in the absence of GlnB and GlnJ there is no modification of R. rubrum NifH in response to ammonium or darkness (Zhang et al., 2001). Similarly in R. capsulatus, a glnB, glnK double mutant does not modify NifH in response to ammonium, although it is not clear if this phenotype is due to the absence of GlnK or a polar effect on AmtB expression (Drepper et al., 2003). In R. capsulatus, the presence of AmtB is also necessary for ammonium-induced but not for darknessinduced ADP-ribosylation (Yakunin and Hallenbeck, 2002). In Azoarcus sp., ammonium-induced NifH modification requires GlnB, GlnK and AmtB whilst the anaerobic response requires GlnB or GlnK (Martin and Reinhold- Hurek, 2002). In A. brasilense, GlnZ was shown to be involved in the reactivation of NifH in response to ammonium (Klassen et al., 2001) and GlnB has been proposed as a candidate for triggering DraT activity in response to ammonium (L. F. Huergo et al., unpublished; Klassen et al., 2005). Interaction of R. capsulatus DraT with either GlnB or GlnK has also been shown using a yeast twohybrid system (Pawlowski et al., 2003). However, despite the P II and Amt proteins being consistently implicated in regulation of NifH modification, there has so far been no conclusive demonstration of how this regulation takes place. Using Western blot analysis we have studied ADPribosylation of NifH in A. brasilense in response to ammonium addition. Our results show that GlnB, GlnZ and DraG reversibly associate with the membrane according to the cellular nitrogen status in an AmtB-dependent manner. These findings suggest a model for the regulation of DraG activity in which an ammonium shock causes DraG to associate with the membrane creating a physical separation from its cytoplasmic substrate ADP-ribosylated NifH and thereby inhibiting the ADP-ribosyl-removing process. Results NifH modification in response to ammonium addition is synchronized with GlnB/GlnZ deuridylylation and membrane association In order to address the possible role of the P II proteins GlnZ and GlnB in the ammonium-induced NifH ADPribosylation in A. brasilense, we followed the NifH, glutamine synthetase (GS) and P II protein modification cycles in response to ammonium addition in wild-type and P II mutant strains. The only way to assess DraT and DraG activities in vivo is indirect, by assessing the modification status of NifH and we therefore decided to examine whether the modification profile of NifH correlates with uridylylation/deuridylylation of GlnB and GlnZ in A. brasilense after an ammonium shock. A. brasilense cells derepressed for nitrogenase were subjected to a shock of 200 µM NH 4 Cl, samples were taken before and after ammonium addition and immediately frozen in liquid nitrogen. The samples were analysed for NifH and GS modification by SDS-PAGE and for GlnB and GlnZ modification by native PAGE (Fig. 1A–D). In many bacteria, including A. brasilense, the dodecameric GS enzyme is also modified in response to extracellular ammonium addition, usually by adenylylation of a tyrosine residue on each subunit. This leads to progressive inactivation of GS as the intracellular nitrogen status rises and consequently GS modification provides an independent indicator of the intracellular response to ammonium addition and should be directly related to the internal glutamine pool. GS modification in A. brasilense differs from that in Escherichia coli where GlnB plays a role in regulating the activity of adenylyltransferase (ATase). In A. brasilense, neither GlnB nor GlnZ appears to influence GS modification significantly (de Zamaroczy, 1998), suggesting that ATase may be regulated solely by the allosteric effects of glutamine binding which is also known to occur in E. coli (Jiang et al., 1998). The modifications of both NifH and GS were synchronized after the ammonium shock (Fig. 1A and B). Modified forms of both proteins could be observed 2 min after ammonium addition and the modifying group was removed after 15 min, by which time the added ammonium will have been exhausted by cellular metabolism (Klassen et al., 2001). Hence NifH modification appears to correlate with an increase in intracellular glutamine © 2005 The Authors Journal compilation © 2005 Blackwell Publishing Ltd, Molecular Microbiology, 59, 326–337

328 L. F. Huergo et al. Fig. 1. Modification profile of NifH, GS, GlnB and GlnZ after an ammonium shock in wild-type A. brasilense cells. Wild-type cells (FP2) derepressed for nitrogenase were subjected to an ammonium shock (200 µM NH 4 Cl) at time zero. Samples were collected, processed and analysed by Western blotting at the time point indicated. Cell extracts were subjected to SDS-PAGE followed by Western blotting using anti-NifH antibody (A) or anti-GS antibody (B). Whole cell extracts were subjected to Native PAGE followed by Western blotting with anti-GlnB antibody (C) or anti-GlnZ antibody (D). Whole cell extracts, cytoplasmic and membrane fractions were subjected to SDS-PAGE followed by Western blotting with anti-GlnB antibody (E), anti-GlnZ antibody (F) or anti-NifH antibody (G). levels in agreement with previous results (Hartmann and Burris, 1987). Given the trimeric nature of P II proteins, GlnB and GlnZ can exist in four different forms according to their uridylylation status (0, 1, 2 and 3 UMP) with the fully uridylylated form showing the highest mobility on native gels (Araujo et al., 2004). Not all four forms of GlnB or GlnZ were resolved on Native PAGE gels but we consider that both proteins are most likely in the 3-UMP form before the ammonium shock and that the most slowly migrating band observed after ammonium addition represents the 0-UMP form (Fig. 1C and D). Indeed when a much higher ammonium shock was used (20 mM NH 4 Cl for 20 min), the migration of GlnB and GlnZ was comparable with the upper bands in Fig. 1C and D respectively (data not shown). The profiles of GlnB and GlnZ after the ammonium shock were quite different (Fig. 1C and D). Deuridylylation of both proteins started within 1 min of ammonium addition and was complete for GlnZ after 2 min, whereas for GlnB deuridylylation was still not complete after 12 min and some putative GlnB 3-UMP was present at all the time points. Re-uridylylation of GlnZ started after 12 min and was complete by 20 min whereas GlnB re-uridylylation started only after 15 min and there was still a detectable level of GlnB 0-UMP after 20 min. In E. coli both P II proteins, GlnB and GlnK, are sequestered to the membrane after an ammonium shock (Coutts et al., 2002; Javelle et al., 2004). In order to determine if this is also the case in A. brasilense, we monitored whole cell extracts, cytoplasmic and membrane fractions for the presence of GlnB and GlnZ before and after the ammonium shock with 200 µM NH 4 Cl (Fig. 1E and F). The purity of the membrane fractions was confirmed by Western blot with an antibody against NifH, which is only present in the cytoplasm (Fig. 1G). Neither GlnB nor GlnZ were membrane-associated before ammonium addition; however, 5 min after addition a proportion of both proteins was membrane-associated. After 20 min, when the internal glutamine pool is inferred to have fallen again as judged by the deadenylylated state of GS, only a small fraction of GlnB was still membrane-associated and no GlnZ signal was detected in the membrane fraction. In E. coli membrane association of GlnK reflects its uridylylation state and this also seems to be the case in A. brasilense. Comparison of the native profile and the membrane association status of GlnB and GlnZ (compare Fig. 1C with 1E and Fig. 1D with 1F) suggest that both proteins are membrane-associated only when they are in the 0-UMP form. The results described so far clearly show that the process of NifH modification, and thus changes in DraT and DraG activities, are synchronized with the modification status of the P II proteins GlnB and GlnZ as well with their changes in cellular location. Effects of a glnB mutation on the NifH, GS and GlnZ modification cycles In the absence of GlnB, NifH is not expressed because the nif transcriptional activator protein NifA is not active (de Zamaroczy et al., 1993). However, it is possible to study the NifH modification process in a glnB mutant by introducing a plasmid (pEMS136) that expresses a constitutively active, N-truncated, form of NifA from Herbaspirillum seropedicae (Souza et al., 1999). Using this approach the A. brasilense GlnB protein has been shown to be necessary for nitrogenase inactivation after ammonium addition because the glnB::km strain (7628) showed only partial nitrogenase switch-off after ammonium addition (Klassen et al., 2005). In A. brasilense, the GS structural gene, glnA, is immediately downstream of glnB and under conditions of nitrogen limitation glnA © 2005 The Authors Journal compilation © 2005 Blackwell Publishing Ltd, Molecular Microbiology, 59, 326–337

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