Phyre 2 Results for Q9H4C3 - Structural Bioinformatics Group

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Phyre 2 Results for Q9H4C3 - Structural Bioinformatics Group

Detailed template

information

Email l.a.kelley@imperial.ac.uk

Description Q9H4C3

Fri May 25 09:25:30 BST

Date

2012

Unique Job

ID 4160342b9dd0a32e

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hdpB_ Alignment 99.8 100

2 c2vjfB_ Alignment 99.7 42

3 c3t6pA_ Alignment 99.7 23

4 c2ecgA_ Alignment 99.6 27

5 c4epoL_ Alignment 99.6 24

6 c2ea5A_ Alignment 99.6 30

7 d1fbva4 Alignment 99.6 19

8 c3fl2A_ Alignment 99.5 10

9 c2yhoE_ Alignment 99.5 30

10 c1z6uA_ Alignment 99.5 17

11 c3eb6A_ Alignment 99.5 31

PDB header:ligase

Chain: B: PDB Molecule:ubiquitin-protein ligase e3 mdm2;

PDBTitle: solution structure of hdm2 ring finger domain

PDB header:ligase

Chain: B: PDB Molecule:mdm4 protein;

PDBTitle: crystal structure of the mdm2-mdmx ring domain

heterodimer

PDB header:apoptosis

Chain: A: PDB Molecule:baculoviral iap repeat-containing protein

2;

PDBTitle: iap antagonist-induced conformational change in ciap1

promotes e32 ligase activation via dimerization

PDB header:apoptosis

Chain: A: PDB Molecule:baculoviral iap repeat-containing protein

4;

PDBTitle: solution structure of the ring domain of the baculoviral2

iap repeat-containing protein 4 from homo sapiens

PDB header:protein binding/ligase

Chain: L: PDB Molecule:e3 ubiquitin-protein ligase rnf8;

PDBTitle: crystal structure of rnf8 bound to the ubc13/mms2

heterodimer

PDB header:cell cycle

Chain: A: PDB Molecule:cell growth regulator with ring finger

domain

PDBTitle: solution structure of the ring domain of the human cell2

growth regulator with ring finger domain 1 protein

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:ligase

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;

PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2

protein ligase uhrf1

PDB header:ligase

Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip;

PDBTitle: the idol-ube2d complex mediates sterol-dependent

degradation of the2 ldl receptor

PDB header:ligase

Chain: A: PDB Molecule:np95-like ring finger protein isoform b;

PDBTitle: np95-like ring finger protein isoform b [homo sapiens]

PDB header:apoptosis, ligase

Chain: A: PDB Molecule:baculoviral iap repeat-containing protein

3;

PDBTitle: structure of the ciap2 ring domain bound to ubch5b


12 c3l11A_ Alignment 99.5 18

13 c2ectA_ Alignment 99.4 20

14 c2csyA_ Alignment 99.4 28

15 c2l0bA_ Alignment 99.4 19

16 c2ep4A_ Alignment 99.4 24

17 c2h0dB_ Alignment 99.4 27

18 d1chca_ Alignment 99.4 29

19 c2d8tA_ Alignment 99.4 28

20 c1x4jA_ Alignment 99.4 22

21 c2kizA_ Alignment not modelled 99.4 25

22 c2f42A_ Alignment not modelled 99.4 12

23 c2cklA_ Alignment not modelled 99.4 26

24 c2djbA_ Alignment not modelled 99.4 20

25 c3vk6A_ Alignment not modelled 99.4 26

26 d1g25a_ Alignment not modelled 99.4 16

27 c2yslA_ Alignment not modelled 99.4 19

28 c2ecyA_ Alignment not modelled 99.4 17

PDB header:ligase

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168;

PDBTitle: crystal structure of the ring domain of rnf168

PDB header:metal binding protein

Chain: A: PDB Molecule:ring finger protein 126;

PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2

finger) domain of ring finger protein 126

PDB header:structural genomics, unknown function

Chain: A: PDB Molecule:zinc finger protein 183-like 1;

PDBTitle: solution structure of the ring domain of the zinc finger2

protein 183-like 1

PDB header:ligase

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1;

PDBTitle: solution nmr structure of zinc finger domain of e3

ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast

structural genomics3 consortium (nesg) target hr4710b

PDB header:protein binding

Chain: A: PDB Molecule:ring finger protein 24;

PDBTitle: solution structure of ring finger from human ring finger2

protein 24

PDB header:metal binding protein/ligase

Chain: B: PDB Molecule:ubiquitin ligase protein ring2;

PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin

ligase complex

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:metal binding protein

Chain: A: PDB Molecule:ring finger protein 146;

PDBTitle: solution structure of the ring domain of the human ring2

finger protein 146

PDB header:structural genomics, unknown function

Chain: A: PDB Molecule:ring finger protein 38;

PDBTitle: solution structure of ring finger in ring finger protein 38

PDB header:metal binding protein

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arkadia;

PDBTitle: solution structure of arkadia ring-h2 finger domain

PDB header:chaperone

Chain: A: PDB Molecule:stip1 homology and u-box containing

protein 1;

PDBTitle: dimerization and u-box domains of zebrafish c-terminal

of hsp702 interacting protein

PDB header:transcription

Chain: A: PDB Molecule:polycomb group ring finger protein 4;

PDBTitle: ring1b-bmi1 e3 catalytic domain structure

PDB header:gene regulation

Chain: A: PDB Molecule:polycomb group ring finger protein 6;

PDBTitle: solution structure of the ring domain of the human

polycomb2 group ring finger protein 6

PDB header:ligase

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hakai;

PDBTitle: crystal structure of a phosphotyrosine binding domain

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:protein binding

Chain: A: PDB Molecule:tripartite motif-containing protein 31;

PDBTitle: solution structure of the ring domain (1-66) from2

tripartite motif-containing protein 31

PDB header:apoptosis

Chain: A: PDB Molecule:tnf receptor-associated factor 3;

PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2

finger)" domain of tnf receptor-associated factor 3


29 d1e4ua_ Alignment not modelled 99.3 20

30 c2ecnA_ Alignment not modelled 99.3 25

31 c2ea6A_ Alignment not modelled 99.3 29

32 c2yurA_ Alignment not modelled 99.3 19

33 d1rmda2 Alignment not modelled 99.3 28

34 c2jmdA_ Alignment not modelled 99.3 23

35 c2ct2A_ Alignment not modelled 99.3 21

36 c2eciA_ Alignment not modelled 99.3 23

37 c2cklB_ Alignment not modelled 99.3 26

38 d1jm7a_ Alignment not modelled 99.3 25

39 c2ecwA_ Alignment not modelled 99.3 23

40 c2xeuA_ Alignment not modelled 99.3 30

41 c2ecmA_ Alignment not modelled 99.2 25

42 d3dplr1 Alignment not modelled 99.2 20

43 c2eclA_ Alignment not modelled 99.2 29

44 c3lrqB_ Alignment not modelled 99.2 21

45 c3hctA_ Alignment not modelled 99.2 23

46 d1iyma_ Alignment not modelled 99.2 20

47 c1fbvA_ Alignment not modelled 99.2 25

48 c2ecvA_ Alignment not modelled 99.2 27

49 d1v87a_ Alignment not modelled 99.2 19

50 d1ur6b_ Alignment not modelled 99.2 20

51 c2y43B_ Alignment not modelled 99.2 19

52 d2c2la2 Alignment not modelled 99.2 13

53 c3ztgA_ Alignment not modelled 99.2 21

54 c3htkC_ Alignment not modelled 99.1 18

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:metal binding protein

Chain: A: PDB Molecule:ring finger protein 141;

PDBTitle: solution structure of the ring domain of the human ring2

finger protein 141

PDB header:transcription

Chain: A: PDB Molecule:ring finger protein 4;

PDBTitle: solution structure of the ring domain of the human ring2

finger protein 4

PDB header:protein binding

Chain: A: PDB Molecule:retinoblastoma-binding protein 6;

PDBTitle: solution structure of the ring finger of human2

retinoblastoma-binding protein 6

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:ligase

Chain: A: PDB Molecule:tnf receptor-associated factor 6;

PDBTitle: solution structure of the ring domain of human traf6

PDB header:ligase

Chain: A: PDB Molecule:tripartite motif protein 32;

PDBTitle: solution structure of the ring domain of the tripartite2

motif protein 32

PDB header:metal binding protein

Chain: A: PDB Molecule:tnf receptor-associated factor 6;

PDBTitle: solution structure of the ring domain of the human tnf2

receptor-associated factor 6 protein

PDB header:transcription

Chain: B: PDB Molecule:ubiquitin ligase protein ring2;

PDBTitle: ring1b-bmi1 e3 catalytic domain structure

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:apoptosis

Chain: A: PDB Molecule:tripartite motif-containing protein 30;

PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2

finger) domain tripartite motif protein 30

PDB header:transcription

Chain: A: PDB Molecule:ring finger protein 4;

PDBTitle: ring domain

PDB header:metal binding protein

Chain: A: PDB Molecule:ring finger and chy zinc finger domain-

PDBTitle: solution structure of the ring domain of the ring finger2

and chy zinc finger domain-containing protein 1 from mus3

musculus

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:metal binding protein

Chain: A: PDB Molecule:ring-box protein 2;

PDBTitle: solution structure of the ring domain of the human ringbox2

protein 2

PDB header:ligase

Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37;

PDBTitle: crystal structure of the u-box domain of human ubiquitin-

2 protein ligase (e3), northeast structural genomics3 consortium

target hr4604d.

PDB header:signaling protein/ligase

Chain: A: PDB Molecule:tnf receptor-associated factor 6;

PDBTitle: crystal structure of traf6 in complex with ubc13 in the

p12 space group

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:ligase

Chain: A: PDB Molecule:signal transduction protein cbl;

PDBTitle: structure of a cbl-ubch7 complex: ring domain function

in2 ubiquitin-protein ligases

PDB header:ligase

Chain: A: PDB Molecule:tripartite motif-containing protein 5;

PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2

finger) domain of tripartite motif-containing protein 5

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:ligase

Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18;

PDBTitle: rad18 ubiquitin ligase ring domain structure

Fold:RING/U-box

Superfamily:RING/U-box

Family:U-box

PDB header:ligase

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rbbp6;

PDBTitle: solution structure of the ring finger-like domain of2

retinoblastoma binding protein-6 (rbbp6)

PDB header:recombination/replication/ligase

Chain: C: PDB Molecule:e3 sumo-protein ligase mms21;

PDBTitle: crystal structure of mms21 and smc5 complex

PDB header:ligase


55 c2jrjA_ Alignment not modelled 99.1 26

56 c1rmdA_ Alignment not modelled 99.1 23

57 c2kreA_ Alignment not modelled 99.1 9

58 d2c2vv1 Alignment not modelled 99.1 18

59 d1t1ha_ Alignment not modelled 99.1 24

60 c2egpA_ Alignment not modelled 99.1 26

61 d1bora_ Alignment not modelled 99.0 19

62 d1wgma_ Alignment not modelled 99.0 10

63 c2ecjA_ Alignment not modelled 99.0 25

64 c3knvA_ Alignment not modelled 99.0 21

65 d2baya1 Alignment not modelled 99.0 15

66 c2d8sA_ Alignment not modelled 98.9 17

67 d1jm7b_ Alignment not modelled 98.9 18

68 c2ct0A_ Alignment not modelled 98.8 23

69 c3nw0A_ Alignment not modelled 98.8 24

70 c3hcsA_ Alignment not modelled 98.8 22

71 d1vyxa_ Alignment not modelled 98.6 19

72 c2yu4A_ Alignment not modelled 98.5 21

73 d1wima_ Alignment not modelled 98.2 14

74 c2c2lD_ Alignment not modelled 97.9 9

75 c3k1lA_ Alignment not modelled 97.4 19

76 c2ko5A_ Alignment not modelled 92.6 18

77 c3i2dA_ Alignment not modelled 89.5 19

78 c2l5uA_ Alignment not modelled 82.9 18

79 d1we9a_ Alignment not modelled 80.5 10

80 c2junA_ Alignment not modelled 80.1 20

81 d2fiya1 Alignment not modelled 78.5 31

Chain: A: PDB Molecule:ring finger and chy zinc finger domain

PDBTitle: solution structure of the human pirh2 ring-h2 domain.2

northeast structural genomics consortium target ht2b

PDB header:dna-binding protein

Chain: A: PDB Molecule:rag1;

PDBTitle: rag1 dimerization domain

PDB header:protein binding

Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b;

PDBTitle: solution structure of e4b/ufd2a u-box domain

Fold:RING/U-box

Superfamily:RING/U-box

Family:U-box

Fold:RING/U-box

Superfamily:RING/U-box

Family:U-box

PDB header:antiviral protein

Chain: A: PDB Molecule:tripartite motif-containing protein 34;

PDBTitle: solution structure of the ring-finger domain from human2

tripartite motif protein 34

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

Fold:RING/U-box

Superfamily:RING/U-box

Family:U-box

PDB header:metal binding protein

Chain: A: PDB Molecule:tripartite motif-containing protein 39;

PDBTitle: solution structure of the ring domain of the human2

tripartite motif-containing protein 39

PDB header:signaling protein

Chain: A: PDB Molecule:tnf receptor-associated factor 2;

PDBTitle: crystal structure of the ring and first zinc finger

domains2 of traf2

Fold:RING/U-box

Superfamily:RING/U-box

Family:U-box

PDB header:metal binding protein

Chain: A: PDB Molecule:cellular modulator of immune

recognition;

PDBTitle: solution structure of the ring domain of the human

cellular2 modulator of immune recognition protein

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:gene regulation

Chain: A: PDB Molecule:non-smc element 1 homolog;

PDBTitle: solution structure of the ring domain of the non-smc2

element 1 protein

PDB header:metal binding protein

Chain: A: PDB Molecule:non-structural maintenance of

chromosomes element 1

PDBTitle: crystal structure of mageg1 and nse1 complex

PDB header:signaling protein

Chain: A: PDB Molecule:tnf receptor-associated factor 6;

PDBTitle: crystal structure of the n-terminal domain of traf6

Fold:RING/U-box

Superfamily:RING/U-box

Family:Variant RING domain

PDB header:apoptosis

Chain: A: PDB Molecule:e3 sumo-protein ligase nse2;

PDBTitle: solution structure of the sp-ring domain in non-smc

element2 2 homolog (mms21, s. cerevisiae)

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:chaperone

Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting

protein;

PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase

PDB header:ligase

Chain: A: PDB Molecule:fancl;

PDBTitle: crystal structure of fancl

PDB header:transcription

Chain: A: PDB Molecule:ring finger protein z;

PDBTitle: nmr solution structure of lfv-z

PDB header:ligase

Chain: A: PDB Molecule:e3 sumo-protein ligase siz1;

PDBTitle: crystal structure of s. cerevisiae sumo e3 ligase siz1

PDB header:metal binding protein

Chain: A: PDB Molecule:chromodomain-helicase-dna-binding

protein 4;

PDBTitle: structure of the first phd finger (phd1) from chd4 (mi2b)

Fold:FYVE/PHD zinc finger

Superfamily:FYVE/PHD zinc finger

Family:PHD domain

PDB header:ligase

Chain: A: PDB Molecule:midline-1;

PDBTitle: structure of the mid1 tandem b-boxes reveals an

interaction2 reminiscent of intermolecular ring heterodimers

Fold:FdhE-like

Superfamily:FdhE-like

Family:FdhE-like


82 d1zbdb_ Alignment not modelled 68.4 9

83 c2e6sA_ Alignment not modelled 65.3 15

84 c3p1vB_ Alignment not modelled 64.7 41

85 d1ttva_ Alignment not modelled 64.5 65

86 d1z60a1 Alignment not modelled 60.7 24

87 d1weoa_ Alignment not modelled 58.7 14

88 c2hr5B_ Alignment not modelled 58.0 35

89 d2cs3a1 Alignment not modelled 55.8 23

90 c2zetD_ Alignment not modelled 50.4 8

91 c1yuzB_ Alignment not modelled 49.6 37

92 d1e7la2 Alignment not modelled 47.8 20

93 c1jocA_ Alignment not modelled 47.8 11

94 d1weva_ Alignment not modelled 47.3 15

95 c3zvzB_ Alignment not modelled 38.8 21

96 d2epqa1 Alignment not modelled 37.0 31

97 d1wd2a_ Alignment not modelled 34.2 26

98 c1dvbA_ Alignment not modelled 34.0 25

99 c3goxB_ Alignment not modelled 31.8 26

100 c3u5pF_ Alignment not modelled 25.2 16

101 d1lv3a_ Alignment not modelled 25.1 38

102 c2xb1A_ Alignment not modelled 23.4 13

103 c2qizA_ Alignment not modelled 22.4 14

104 d1wffa_ Alignment not modelled 21.3 13

Fold:FYVE/PHD zinc finger

Superfamily:FYVE/PHD zinc finger

Family:FYVE, a phosphatidylinositol-3-phosphate binding domain

PDB header:cell cycle

Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf2;

PDBTitle: solution structure of the phd domain in ring finger

protein2 107

PDB header:hydrolase

Chain: B: PDB Molecule:metallo-endopeptidase;

PDBTitle: crystal structure of a metallo-endopeptidases

(bacova_00663) from2 bacteroides ovatus at 1.93 a resolution

Fold:SWIB/MDM2 domain

Superfamily:SWIB/MDM2 domain

Family:SWIB/MDM2 domain

Fold:Cysteine-rich domain

Superfamily:Cysteine-rich domain

Family:TFIIH p44 subunit cysteine-rich domain

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:metal binding protein

Chain: B: PDB Molecule:rubrerythrin;

PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron

bound form

Fold:RING/U-box

Superfamily:RING/U-box

Family:Variant RING domain

PDB header:signaling protein

Chain: D: PDB Molecule:melanophilin;

PDBTitle: crystal structure of the small gtpase rab27b complexed

with2 the slp homology domain of slac2-a/melanophilin

PDB header:oxidoreductase

Chain: B: PDB Molecule:nigerythrin;

PDBTitle: partially reduced state of nigerythrin

Fold:His-Me finger endonucleases

Superfamily:His-Me finger endonucleases

Family:Recombination endonuclease VII, N-terminal domain

PDB header:membrane protein

Chain: A: PDB Molecule:early endosomal autoantigen 1;

PDBTitle: eea1 homodimer of c-terminal fyve domain bound to

inositol2 1,3-diphosphate

Fold:FYVE/PHD zinc finger

Superfamily:FYVE/PHD zinc finger

Family:PHD domain

PDB header:ligase

Chain: B: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;

PDBTitle: phd finger of human uhrf1

Fold:beta-beta-alpha zinc fingers

Superfamily:beta-beta-alpha zinc fingers

Family:Classic zinc finger, C2H2

Fold:RING/U-box

Superfamily:RING/U-box

Family:RING finger domain, C3HC4

PDB header:electron transport

Chain: A: PDB Molecule:rubrerythrin;

PDBTitle: rubrerythrin

PDB header:hydrolase/dna

Chain: B: PDB Molecule:restriction endonuclease hpy99i;

PDBTitle: crystal structure of the beta-beta-alpha-me type ii

restriction2 endonuclease hpy99i in the absence of edta

PDB header:transcription

Chain: F: PDB Molecule:e3 ubiquitin-protein ligase trim33;

PDBTitle: crystal structure of the complex of trim33 phd-bromo and

h3(1-28)2 k9me3k14ack18ack23ac histone peptide

Fold:Glucocorticoid receptor-like (DNA-binding domain)

Superfamily:Glucocorticoid receptor-like (DNA-binding domain)

Family:Hypothetical zinc finger protein YacG

PDB header:transcription

Chain: A: PDB Molecule:pygopus homolog 2, b-cell cll/lymphoma

9-like protein;

PDBTitle: crystal structure of the human pygo2 phd finger in

complex with the2 b9l hd1 domain

PDB header:ligase

Chain: A: PDB Molecule:ubiquitin conjugation factor e4;

PDBTitle: structure of the yeast u-box-containing ubiquitin ligase2

ufd2p

Fold:AN1-like Zinc finger

Superfamily:AN1-like Zinc finger

Family:AN1-like Zinc finger

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