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MOPEX User's Guide - IRSA

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<strong>MOPEX</strong> User’s <strong>Guide</strong><br />

Chapter 9. Running <strong>MOPEX</strong> on the Command Line..................................................... 222<br />

9.1 Setting up <strong>MOPEX</strong> .......................................................................................................... 222<br />

9.2 Setting up the <strong>MOPEX</strong> directory structure ......................................................................... 222<br />

9.3 Running <strong>MOPEX</strong> ............................................................................................................ 223<br />

9.4 <strong>MOPEX</strong> Input Namelist ................................................................................................... 224<br />

9.4.1 Processing Flow Control........................................................................................... 226<br />

9.4.2 Global Parameters Outside the Module Blocks ........................................................... 226<br />

9.4.3 Module Parameter Blocks ......................................................................................... 228<br />

9.5 Running Overlap on the command line.............................................................................. 228<br />

9.6 Running Mosaic on the command line............................................................................... 229<br />

9.7 Running APEX on the command line ................................................................................ 230<br />

9.7.1 APEX Multiframe (apex.pl) ....................................................................................... 230<br />

9.7.2 APEX User List Multiframe (apex_user_list.pl) .......................................................... 231<br />

9.7.3 APEX QA Multiframe (apex_qa.pl) ............................................................................ 232<br />

9.7.4 Single-frame mode (apex_1frame.pl).......................................................................... 233<br />

9.7.5 APEX User List Single Frame (apex_user_list_1frame.pl)........................................... 233<br />

9.7.6 Single Frame Residual Image Creation (apex_qa.pl) .................................................. 233<br />

9.8 Running PRF Estimate on the command line ..................................................................... 235<br />

Appendix A. Full List of <strong>MOPEX</strong> Scripts ........................................................................... 237<br />

A.1 Supported Scripts............................................................................................................. 237<br />

A.1.1 Commonly Used ...................................................................................................... 237<br />

A.1.2 Auxiliary .................................................................................................................. 238<br />

A.1.3 Under Construction .................................................................................................. 239<br />

Appendix B. Full List of Modules in <strong>MOPEX</strong> .................................................................... 241<br />

B.1 Overlap Modules ............................................................................................................. 241<br />

B.2 Mosaic Modules .............................................................................................................. 242<br />

B.3 APEX (User List) and APEX (User List) 1Frame Modules ................................................. 244<br />

B.4 APEX QA Modules ......................................................................................................... 246<br />

B.5 PRF Estimate Modules ..................................................................................................... 247<br />

Appendix C. PRF Fitting Correction Factors for APEX: Version 1 (10/20/2010) ........ 248<br />

Appendix D. Some Tips for <strong>MOPEX</strong> with Spitzer Data: Version 1 (3/16/2012) ........... 250<br />

D.1 Mosaics (IRAC and MIPS) ................................................................................................... 250<br />

D.2 Fluxes and Uncertainties (IRAC and MIPS)........................................................................... 250<br />

D.3 Point-Source Fitting: Apex for IRAC stacks, Apex_1frame for MIPS mosaic ........................... 251<br />

D.4 Use the Mosaic Task to make Mosaics (IRAC data) ............................................................... 251

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