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Phylogenetic analysis of West Nile Virus in Maricopa County,
Arizona: Evidence for dynamic behavior of strains in two
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Phylogenetic analysis of West Nile Virus in Maricopa County,
Arizona: Evidence for dynamic behavior of strains in two
major lineages in the American Southwest
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File Size: 3451 KB Print Length: 23 pages Simultaneous Device Usage: Unlimited Publication Date: March
20, 2020 Sold by: Amazon.com Services LLC Language: English ASIN: B0867MZP9J Text-to-Speech:
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Book Description
West Nile Virus (WNV) has been detected annually in Maricopa County, Arizona, since 2003.
With this in mind, we sought to determine if contemporary strains are endemic to the county or
are annually imported. As part of this effort, we developed a new protocol for tiled amplicon
sequencing of WNV to efficiently attain greater than 99% coverage of 14 WNV genomes
collected directly from positive mosquito pools distributed throughout Maricopa County between
2014 and 2017. Bayesian phylogenetic analyses revealed that contemporary genomes fall within
two major lineages; NA/WN02 and SW/WN03. We found that all of the Arizona strains
possessed an amino acid substitution known to be under positive selection, which has arisen
independently at least four times in Arizona. The SW/WN03 strains exhibited transient behavior,
with at least 10 separate introductions into Arizona when considering both historical and
contemporary strains. However, NA/WN02 strains are geographically differentiated and appear to
be endemic in Arizona, with two clades that have been circulating for four and seven years. This
establishment in Maricopa County provides the first evidence of local overwintering by a WNV
strain over the course of several years in Arizona. Within a national context, the placement of
eleven contemporary Arizona strains in the NA/WN02 lineage indicates while WNV first entered
the northeastern United States in 1999, the most ancestral extant strains of WNV are now
circulating in the American southwest.
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