Comparison of Eswab with Amies swab in maintaining ... - UZ Leuven
Comparison of Eswab with Amies swab in maintaining ... - UZ Leuven
Comparison of Eswab with Amies swab in maintaining ... - UZ Leuven
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Veroniek Saegeman<br />
<strong>Comparison</strong> <strong>of</strong> <strong>E<strong>swab</strong></strong> <strong>with</strong> <strong>Amies</strong><br />
<strong>swab</strong> <strong>in</strong> ma<strong>in</strong>ta<strong>in</strong><strong>in</strong>g viability <strong>of</strong><br />
microorganisms<br />
<strong>Comparison</strong> <strong>of</strong> Gram sta<strong>in</strong> quality<br />
<strong>with</strong> <strong>E<strong>swab</strong></strong> versus dry <strong>swab</strong><br />
GSO Cl<strong>in</strong>ical Biology, UH<strong>Leuven</strong> 19 may 2010
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />
• To isolate and identify potential pathogens<br />
from cl<strong>in</strong>ical specimens<br />
– Appropriate collection <strong>of</strong> specimen<br />
– Ma<strong>in</strong>tenance <strong>of</strong> microorganism viability<br />
• Specimens collected<br />
– Biopsy<br />
– Needle aspiration, dra<strong>in</strong>age<br />
– Swab
• Swab<br />
– Not ideal<br />
<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />
• Toxic products∕<strong>in</strong>activat<strong>in</strong>g substances<br />
• Interference <strong>with</strong> identification methods<br />
– Frequently used<br />
• Patient comfort<br />
• Time sav<strong>in</strong>g
• Swab assessment<br />
– Swab tip<br />
<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />
• Cotton, Dacron, rayon<br />
– Possibility <strong>of</strong> toxicity (cotton)<br />
– Bacterial entrapment <strong>in</strong> dense fiber matrix<br />
– Transport medium<br />
• Protection <strong>of</strong> bacterial viability dry <strong>swab</strong><br />
• Reduc<strong>in</strong>g substances for ma<strong>in</strong>ta<strong>in</strong><strong>in</strong>g viability <strong>of</strong><br />
anaerobes
<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />
• Copan <strong>E<strong>swab</strong></strong> TM technique<br />
– Screw-cap tube<br />
– 1 mL liquid <strong>Amies</strong> medium<br />
– Specimen collection <strong>swab</strong><br />
– Tip flocked <strong>with</strong> s<strong>of</strong>t nylon fiber<br />
� better absorption and release <strong>of</strong> bacteria? 1<br />
– Storage at 4-8 C or at room temperature<br />
– Delay <strong>of</strong> process<strong>in</strong>g up to 48 hrs<br />
1 Van Horn et al, 2008
<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />
• Copan <strong>E<strong>swab</strong></strong> TM technique<br />
– Screw-cap tube<br />
– 1 mL liquid <strong>Amies</strong> medium<br />
– Specimen collection <strong>swab</strong><br />
– Tip flocked <strong>with</strong> s<strong>of</strong>t nylon fiber<br />
� better absorption and release <strong>of</strong> bacteria? 1<br />
– Storage at 4-8 C or at room temperature<br />
– Delay <strong>of</strong> process<strong>in</strong>g up to 48 hrs<br />
1 Van Horn et al, 2008
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> Literature<br />
• Physical characteristics <strong>E<strong>swab</strong></strong> TM<br />
Particle<br />
release<br />
Bacteria<br />
Inoculum<br />
per plate<br />
Flocked<br />
<strong>swab</strong><br />
92% <strong>of</strong> <strong>in</strong>itial<br />
<strong>in</strong>oculum<br />
Adher<strong>in</strong>g by<br />
capillary action<br />
Cotton/rayon<br />
<strong>swab</strong><br />
30% <strong>of</strong> <strong>in</strong>itial<br />
<strong>in</strong>oculum<br />
Absorbed and<br />
enmeshed<br />
Constant Decrease<br />
1 Human and Jones, 2006<br />
Cotton/rayon<br />
Flocked
<strong>E<strong>swab</strong></strong> Literature<br />
• Acceptance criteria<br />
– CLSI standard M40-A’Quality control <strong>of</strong><br />
microbiological transport systems’ (2004)<br />
– Quantitative <strong>swab</strong> elution method<br />
• Ability <strong>of</strong> transport system to ma<strong>in</strong>ta<strong>in</strong> organism viability<br />
• Acceptable: no more than a 3-log 10 decl<strong>in</strong>e <strong>in</strong> CFU between<br />
the zero-time CFU count and the CFU count after the specific<br />
storage time
<strong>E<strong>swab</strong></strong> Literature
<strong>E<strong>swab</strong></strong> Literature<br />
• Acceptance criteria<br />
– CLSI standard M40-A’Quality control <strong>of</strong><br />
microbiological transport systems’<br />
– Qualitative roll-plate method<br />
• Include mechanical variables <strong>of</strong> the direct <strong>swab</strong>b<strong>in</strong>g on a plate<br />
� <strong>in</strong>fluences release <strong>of</strong> the sample on the plate<br />
• Acceptable: 5 CFU at the storage time from the dilution that<br />
yielded zero-time plate counts closest to 300 CFU
<strong>E<strong>swab</strong></strong> Literature
<strong>E<strong>swab</strong></strong> Literature<br />
• Acceptance criteria <strong>E<strong>swab</strong></strong><br />
– CLSI standard M40-A<br />
– Quantitative <strong>swab</strong> elution method and Qualitative rollplate<br />
method<br />
• OK for S. pyogenes, S. agalactiae, S. pneumoniae, E. faecalis,<br />
S. aureus, E. coli, P. aerug<strong>in</strong>osa, H. <strong>in</strong>fluenzae, C. albicans at<br />
4 C and 21 C for 48 hrs 1,2,3<br />
• OK for P. anaerobius, B. fragilis, F. nucleatum, F.<br />
necrophorum, P. acnes, P. melan<strong>in</strong>ogenica, C. sporogenes, C.<br />
perfr<strong>in</strong>gens, Peptococcus magnus at 4 C and 21 C for 48 hrs<br />
1,2<br />
• OK for N. gonorrhoeae at 4 C and 21 C for 24 hrs 1,2<br />
1 Van Horn et al, 2008; 2 <strong>E<strong>swab</strong></strong> Copan product <strong>in</strong>sert, 2006; 3 Nys et al, 2010
<strong>E<strong>swab</strong></strong> Literature<br />
• Anaerobic microorganisms and <strong>E<strong>swab</strong></strong><br />
• Survival <strong>of</strong> P. melan<strong>in</strong>ogenica at room temperature:<br />
– Yes: Biggs, 2007; Sar<strong>in</strong>a et al, 2009, <strong>E<strong>swab</strong></strong> Copan product<br />
<strong>in</strong>sert, 2006<br />
– No: Van Horn et al, 2008<br />
• Poor/no survival <strong>of</strong><br />
– certa<strong>in</strong> clostridia (C. difficile, C. clostridi<strong>of</strong>orme)<br />
– Prevotella bivia, Porphyromonas asaccharolytica, Peptoniphilus<br />
asaccharolyticus (Allen et al, 2009)<br />
� additional studies warranted for survival <strong>of</strong> Clostridia and<br />
fastidious anaerobic organisms
<strong>E<strong>swab</strong></strong> Literature<br />
• MRSA <strong>E<strong>swab</strong></strong> collection kit TM<br />
– Pooled samples <strong>of</strong> nares, (throat) and per<strong>in</strong>eum<br />
� multiple tests: culture, PCR<br />
� sampl<strong>in</strong>g bias<br />
� costs<br />
– higher MRSA recovery than <strong>with</strong> conventional <strong>swab</strong><br />
systems (Venturi Transystem, Copan: Smismans et al, 2009; Stuart liquid<br />
transystem, Copan: Giambra and Castriciano, 2007 and Fontana et al, 2008)
<strong>E<strong>swab</strong></strong> Literature<br />
• Wounds: <strong>E<strong>swab</strong></strong> vs charcoal <strong>swab</strong> <strong>in</strong> Stuart<br />
transport medium (Friis-Moller et al, 2008)<br />
Pos<br />
<strong>E<strong>swab</strong></strong><br />
Pos<br />
Stuart<br />
Pos<br />
<strong>E<strong>swab</strong></strong><br />
Neg<br />
Stuart<br />
Pos<br />
Stuart<br />
Neg<br />
<strong>E<strong>swab</strong></strong><br />
Neg<br />
Stuart<br />
Neg<br />
<strong>E<strong>swab</strong></strong><br />
P-value<br />
All bacteria 259 62 38 35 0.016<br />
S. aureus 68 9 16 103 0.162<br />
P. aerug<strong>in</strong>osa 27 5 1 163 0.013<br />
Haemolytic<br />
streptococci<br />
14 2 4 176 0.414<br />
anaerobes 4 8 3 181 0.132
<strong>E<strong>swab</strong></strong> Literature<br />
• General remarks <strong>E<strong>swab</strong></strong><br />
• Reliable for molecular test<strong>in</strong>g: nucleic acids stable<br />
up to 15 days at RT (Moore et al, 2008)<br />
• Trichomonas vag<strong>in</strong>alis viability ma<strong>in</strong>ta<strong>in</strong>ed,<br />
although lower sensitivity than UTM Copan (Rivers et<br />
al, 2007)<br />
• Neisseria gonorrhoeae and Chlamydia trachomatis<br />
same sensitivity as conventional <strong>swab</strong>s (BD Probe<br />
Tec TM , APTIMA <strong>swab</strong>) for NAT (Castriciano et al, 2009;<br />
Chernesky et al, 2009)
<strong>E<strong>swab</strong></strong> Literature<br />
• Gram sta<strong>in</strong> <strong>with</strong> <strong>E<strong>swab</strong></strong><br />
– <strong>E<strong>swab</strong></strong> superior quality versus rayon <strong>swab</strong> <strong>in</strong><br />
<strong>Amies</strong> gel (Copan) (Fontana et al, 2009)<br />
• More bacterial morphotypes visualised<br />
• More dist<strong>in</strong>guishable bacterial morphology, i.e.<br />
shape, colour… (diplococci)<br />
• Better detail and higher number <strong>of</strong> human cells<br />
(epithelial cells, leucocytes, red blood cells)<br />
• No <strong>in</strong>fluence <strong>of</strong><br />
– volume used (50 µl – 100 µl)<br />
– time delay for microscopy (2h – 24h – 72h)
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> study<br />
• Copan <strong>E<strong>swab</strong></strong> TM versus<br />
– Blue <strong>swab</strong> <strong>in</strong> <strong>Amies</strong> transport medium (Int. Medical Products)<br />
• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />
species recovery<br />
– Red dry Copan <strong>swab</strong><br />
• Gram sta<strong>in</strong><br />
• Wound <strong>swab</strong>s<br />
– Hospital wards: Septic Orthopaedics (E231), Burn Care Unit<br />
(E519)
<strong>E<strong>swab</strong></strong> study<br />
• Copan <strong>E<strong>swab</strong></strong> TM versus<br />
– Blue <strong>swab</strong> <strong>in</strong> <strong>Amies</strong> transport medium (Int. Medical Products)<br />
• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />
species recovery<br />
– Red dry Copan <strong>swab</strong><br />
• Gram sta<strong>in</strong><br />
• Method: CLSI M40-A<br />
– Quantitative <strong>swab</strong> elution method (125 samples)<br />
– Qualitative roll-plate method (125 samples)
<strong>E<strong>swab</strong></strong> study<br />
• Copan MRSA <strong>E<strong>swab</strong></strong> TM versus<br />
– Red dry Copan <strong>swab</strong>s (1 <strong>of</strong> nares / 1 <strong>of</strong> per<strong>in</strong>eum)<br />
• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />
species recovery; gram sta<strong>in</strong><br />
• MRSA screen<strong>in</strong>g <strong>of</strong> nose and per<strong>in</strong>eum<br />
– Hospital wards: Burn Care Unit (E519), Geriatric Medic<strong>in</strong>e (E640,<br />
E641, E455, E230), General Internal Medic<strong>in</strong>e (E454)
<strong>E<strong>swab</strong></strong> study<br />
• Copan MRSA <strong>E<strong>swab</strong></strong> TM versus<br />
– Red dry Copan <strong>swab</strong>s (1 <strong>of</strong> nares / 1 <strong>of</strong> per<strong>in</strong>eum)<br />
• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />
species recovery; gram sta<strong>in</strong><br />
• Method: CLSI M40-A<br />
– Quantitative <strong>swab</strong> elution method (125 samples)<br />
– Qualitative roll-plate method (125 samples)
<strong>E<strong>swab</strong></strong> study<br />
• Interfer<strong>in</strong>g parameters?<br />
– Time <strong>in</strong>terval from sample collection to process<strong>in</strong>g:<br />
room temperature storage<br />
– Type <strong>of</strong> <strong>swab</strong> used first
<strong>E<strong>swab</strong></strong> study<br />
• M<strong>in</strong>imal detection limit?<br />
– <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />
• 9-fold higher recovery <strong>with</strong> <strong>E<strong>swab</strong></strong><br />
– <strong>E<strong>swab</strong></strong> vs <strong>Amies</strong> gel <strong>swab</strong><br />
• 6-fold higher recovery <strong>with</strong> <strong>E<strong>swab</strong></strong><br />
�Inocula on dry <strong>swab</strong>/<strong>Amies</strong> gel <strong>swab</strong> must be 9/6<br />
times higher to reach similar detectable growth as<br />
<strong>with</strong> <strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> study<br />
• M<strong>in</strong>imal detection limit?<br />
– 1 <strong>E<strong>swab</strong></strong> vs 4 dry <strong>swab</strong>s <strong>with</strong>out growth<br />
– 20 <strong>E<strong>swab</strong></strong>s vs 25 <strong>Amies</strong> gel <strong>swab</strong>s <strong>with</strong>out growth<br />
� <strong>E<strong>swab</strong></strong> lower m<strong>in</strong>imal detection limit
1,E+09<br />
1,E+08<br />
1,E+07<br />
1,E+06<br />
1,E+05<br />
1,E+04<br />
1,E+03<br />
1,E+02<br />
1,E+01<br />
1,E+00<br />
<strong>E<strong>swab</strong></strong> study<br />
• Bacterial recovery? MRSA <strong>E<strong>swab</strong></strong><br />
<strong>E<strong>swab</strong></strong> significant higher<br />
recovery than dry <strong>swab</strong><br />
(paired t-test, p < 0.01)<br />
dry <strong>swab</strong><br />
<strong>E<strong>swab</strong></strong><br />
0 10 20 30 40 50 60 70 80 90<br />
Dry <strong>swab</strong>:
1,E+09<br />
1,E+08<br />
1,E+07<br />
1,E+06<br />
1,E+05<br />
1,E+04<br />
1,E+03<br />
1,E+02<br />
1,E+01<br />
1,E+00<br />
<strong>E<strong>swab</strong></strong> study<br />
• Bacterial recovery? <strong>E<strong>swab</strong></strong> wounds<br />
blue <strong>swab</strong><br />
<strong>E<strong>swab</strong></strong><br />
0 10 20 30 40 50 60<br />
<strong>E<strong>swab</strong></strong> significant higher<br />
recovery than <strong>Amies</strong> gel<br />
<strong>swab</strong> (paired t-test, p < 0.01)<br />
<strong>Amies</strong> gel <strong>swab</strong>:
• Bacterial recovery?<br />
<strong>E<strong>swab</strong></strong> study<br />
– Parameters – MRSA screen<br />
• No <strong>in</strong>fluence <strong>of</strong> time delay at room temperature<br />
until process<strong>in</strong>g<br />
• No <strong>in</strong>fluence <strong>of</strong> <strong>swab</strong> type used first
• Species recovery?<br />
<strong>E<strong>swab</strong></strong> study<br />
– MRSA screen: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />
• Dry <strong>swab</strong> missed 4 MRSA stra<strong>in</strong>s<br />
• <strong>E<strong>swab</strong></strong> missed 3 MRSA stra<strong>in</strong>s<br />
� more MRSAs <strong>with</strong> <strong>E<strong>swab</strong></strong> (p > 0.05)
• Species recovery?<br />
<strong>E<strong>swab</strong></strong> study<br />
– Wounds: <strong>E<strong>swab</strong></strong> vs <strong>Amies</strong> gel <strong>swab</strong>: more<br />
species <strong>with</strong> <strong>E<strong>swab</strong></strong><br />
<strong>E<strong>swab</strong></strong> +,<br />
<strong>Amies</strong> <strong>swab</strong> -<br />
<strong>E<strong>swab</strong></strong> -,<br />
<strong>Amies</strong> <strong>swab</strong> +<br />
Gramnegatives<br />
Staphylococcus<br />
spp./Microco-<br />
coccus spp.<br />
Streptococcus<br />
spp./<br />
Enterococcus<br />
spp.<br />
Coryne-<br />
bacterium<br />
spp.<br />
2 10 7 0<br />
3 1 1 1
<strong>E<strong>swab</strong></strong> study<br />
• Gram sta<strong>in</strong>: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />
– 1 drop <strong>of</strong> vortexed <strong>E<strong>swab</strong></strong> <strong>Amies</strong> medium vs roll<strong>in</strong>g dry<br />
<strong>swab</strong> on slide<br />
– MRSA screen<strong>in</strong>g and wound <strong>swab</strong><br />
Superiority <strong>of</strong><br />
Dry <strong>swab</strong><br />
<strong>E<strong>swab</strong></strong><br />
No. bacterial<br />
morphotypes (%)<br />
No. Bacteria/<br />
HPF (%)<br />
Other cells<br />
(leukocytes,<br />
epithelial cells) (%)<br />
12/149 (8.1) 11/149 (7.4) 9/96 (9.4)<br />
46/149 (30.9) 69/149 (46.3) 14/96 (14.6)
<strong>E<strong>swab</strong></strong> study<br />
• Gram sta<strong>in</strong>: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />
– MRSA and wound <strong>swab</strong><br />
� <strong>E<strong>swab</strong></strong> superior Gram sta<strong>in</strong> quality
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> conclusions<br />
• Superiority <strong>of</strong> <strong>E<strong>swab</strong></strong> compared <strong>with</strong> dry<br />
<strong>swab</strong>/<strong>Amies</strong> gel <strong>swab</strong> <strong>in</strong> terms <strong>of</strong><br />
– ‘M<strong>in</strong>imal detection limit’<br />
– Bacterial recovery (CFU/mL)<br />
– Species recovery<br />
– Gram sta<strong>in</strong> quality
<strong>E<strong>swab</strong></strong> conclusions<br />
• Cl<strong>in</strong>ical-organisational impact<br />
– Several lab tests <strong>with</strong> a s<strong>in</strong>gle sample (rapid<br />
antigen test<strong>in</strong>g, culture, PCR)<br />
– Suitable for automated <strong>swab</strong> process<strong>in</strong>g<br />
systems (AccuPAS, Dynacon; WASP, Copan)
• Cost impact<br />
<strong>E<strong>swab</strong></strong> conclusions<br />
– <strong>E<strong>swab</strong></strong>: expensive <strong>swab</strong> system<br />
Wound <strong>swab</strong>s<br />
1 dry <strong>swab</strong> + 1 <strong>swab</strong> <strong>in</strong><br />
amies medium<br />
↕<br />
1 <strong>E<strong>swab</strong></strong><br />
MRSA screen<strong>in</strong>g<br />
culture PCR + culture<br />
2 dry Copan<br />
<strong>swab</strong><br />
↕<br />
1 <strong>E<strong>swab</strong></strong><br />
1 double Copan <strong>swab</strong><br />
Venturi transystem<br />
↕<br />
1 <strong>E<strong>swab</strong></strong><br />
0,53 € 0,42 € 1,37 €<br />
0,83 € 1,57 € 1,57 €
• Cost impact<br />
<strong>E<strong>swab</strong></strong> conclusions<br />
– <strong>E<strong>swab</strong></strong>: expensive <strong>swab</strong> system<br />
BUT<br />
– Reduced No. <strong>of</strong> samples<br />
– Better performance � higher MRSA detection<br />
rate � shorter length <strong>of</strong> stay � hospital cost
• Introduction<br />
• Literature<br />
• Study UH<strong>Leuven</strong><br />
• Conclusions<br />
• To do / actions<br />
<strong>E<strong>swab</strong></strong>
<strong>E<strong>swab</strong></strong> To do<br />
• F<strong>in</strong>alisation <strong>of</strong> <strong>swab</strong> study<br />
• Introduction <strong>of</strong> <strong>E<strong>swab</strong></strong> depend<strong>in</strong>g on price?