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Comparison of Eswab with Amies swab in maintaining ... - UZ Leuven

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Veroniek Saegeman<br />

<strong>Comparison</strong> <strong>of</strong> <strong>E<strong>swab</strong></strong> <strong>with</strong> <strong>Amies</strong><br />

<strong>swab</strong> <strong>in</strong> ma<strong>in</strong>ta<strong>in</strong><strong>in</strong>g viability <strong>of</strong><br />

microorganisms<br />

<strong>Comparison</strong> <strong>of</strong> Gram sta<strong>in</strong> quality<br />

<strong>with</strong> <strong>E<strong>swab</strong></strong> versus dry <strong>swab</strong><br />

GSO Cl<strong>in</strong>ical Biology, UH<strong>Leuven</strong> 19 may 2010


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />

• To isolate and identify potential pathogens<br />

from cl<strong>in</strong>ical specimens<br />

– Appropriate collection <strong>of</strong> specimen<br />

– Ma<strong>in</strong>tenance <strong>of</strong> microorganism viability<br />

• Specimens collected<br />

– Biopsy<br />

– Needle aspiration, dra<strong>in</strong>age<br />

– Swab


• Swab<br />

– Not ideal<br />

<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />

• Toxic products∕<strong>in</strong>activat<strong>in</strong>g substances<br />

• Interference <strong>with</strong> identification methods<br />

– Frequently used<br />

• Patient comfort<br />

• Time sav<strong>in</strong>g


• Swab assessment<br />

– Swab tip<br />

<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />

• Cotton, Dacron, rayon<br />

– Possibility <strong>of</strong> toxicity (cotton)<br />

– Bacterial entrapment <strong>in</strong> dense fiber matrix<br />

– Transport medium<br />

• Protection <strong>of</strong> bacterial viability dry <strong>swab</strong><br />

• Reduc<strong>in</strong>g substances for ma<strong>in</strong>ta<strong>in</strong><strong>in</strong>g viability <strong>of</strong><br />

anaerobes


<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />

• Copan <strong>E<strong>swab</strong></strong> TM technique<br />

– Screw-cap tube<br />

– 1 mL liquid <strong>Amies</strong> medium<br />

– Specimen collection <strong>swab</strong><br />

– Tip flocked <strong>with</strong> s<strong>of</strong>t nylon fiber<br />

� better absorption and release <strong>of</strong> bacteria? 1<br />

– Storage at 4-8 C or at room temperature<br />

– Delay <strong>of</strong> process<strong>in</strong>g up to 48 hrs<br />

1 Van Horn et al, 2008


<strong>E<strong>swab</strong></strong> <strong>in</strong>troduction<br />

• Copan <strong>E<strong>swab</strong></strong> TM technique<br />

– Screw-cap tube<br />

– 1 mL liquid <strong>Amies</strong> medium<br />

– Specimen collection <strong>swab</strong><br />

– Tip flocked <strong>with</strong> s<strong>of</strong>t nylon fiber<br />

� better absorption and release <strong>of</strong> bacteria? 1<br />

– Storage at 4-8 C or at room temperature<br />

– Delay <strong>of</strong> process<strong>in</strong>g up to 48 hrs<br />

1 Van Horn et al, 2008


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> Literature<br />

• Physical characteristics <strong>E<strong>swab</strong></strong> TM<br />

Particle<br />

release<br />

Bacteria<br />

Inoculum<br />

per plate<br />

Flocked<br />

<strong>swab</strong><br />

92% <strong>of</strong> <strong>in</strong>itial<br />

<strong>in</strong>oculum<br />

Adher<strong>in</strong>g by<br />

capillary action<br />

Cotton/rayon<br />

<strong>swab</strong><br />

30% <strong>of</strong> <strong>in</strong>itial<br />

<strong>in</strong>oculum<br />

Absorbed and<br />

enmeshed<br />

Constant Decrease<br />

1 Human and Jones, 2006<br />

Cotton/rayon<br />

Flocked


<strong>E<strong>swab</strong></strong> Literature<br />

• Acceptance criteria<br />

– CLSI standard M40-A’Quality control <strong>of</strong><br />

microbiological transport systems’ (2004)<br />

– Quantitative <strong>swab</strong> elution method<br />

• Ability <strong>of</strong> transport system to ma<strong>in</strong>ta<strong>in</strong> organism viability<br />

• Acceptable: no more than a 3-log 10 decl<strong>in</strong>e <strong>in</strong> CFU between<br />

the zero-time CFU count and the CFU count after the specific<br />

storage time


<strong>E<strong>swab</strong></strong> Literature


<strong>E<strong>swab</strong></strong> Literature<br />

• Acceptance criteria<br />

– CLSI standard M40-A’Quality control <strong>of</strong><br />

microbiological transport systems’<br />

– Qualitative roll-plate method<br />

• Include mechanical variables <strong>of</strong> the direct <strong>swab</strong>b<strong>in</strong>g on a plate<br />

� <strong>in</strong>fluences release <strong>of</strong> the sample on the plate<br />

• Acceptable: 5 CFU at the storage time from the dilution that<br />

yielded zero-time plate counts closest to 300 CFU


<strong>E<strong>swab</strong></strong> Literature


<strong>E<strong>swab</strong></strong> Literature<br />

• Acceptance criteria <strong>E<strong>swab</strong></strong><br />

– CLSI standard M40-A<br />

– Quantitative <strong>swab</strong> elution method and Qualitative rollplate<br />

method<br />

• OK for S. pyogenes, S. agalactiae, S. pneumoniae, E. faecalis,<br />

S. aureus, E. coli, P. aerug<strong>in</strong>osa, H. <strong>in</strong>fluenzae, C. albicans at<br />

4 C and 21 C for 48 hrs 1,2,3<br />

• OK for P. anaerobius, B. fragilis, F. nucleatum, F.<br />

necrophorum, P. acnes, P. melan<strong>in</strong>ogenica, C. sporogenes, C.<br />

perfr<strong>in</strong>gens, Peptococcus magnus at 4 C and 21 C for 48 hrs<br />

1,2<br />

• OK for N. gonorrhoeae at 4 C and 21 C for 24 hrs 1,2<br />

1 Van Horn et al, 2008; 2 <strong>E<strong>swab</strong></strong> Copan product <strong>in</strong>sert, 2006; 3 Nys et al, 2010


<strong>E<strong>swab</strong></strong> Literature<br />

• Anaerobic microorganisms and <strong>E<strong>swab</strong></strong><br />

• Survival <strong>of</strong> P. melan<strong>in</strong>ogenica at room temperature:<br />

– Yes: Biggs, 2007; Sar<strong>in</strong>a et al, 2009, <strong>E<strong>swab</strong></strong> Copan product<br />

<strong>in</strong>sert, 2006<br />

– No: Van Horn et al, 2008<br />

• Poor/no survival <strong>of</strong><br />

– certa<strong>in</strong> clostridia (C. difficile, C. clostridi<strong>of</strong>orme)<br />

– Prevotella bivia, Porphyromonas asaccharolytica, Peptoniphilus<br />

asaccharolyticus (Allen et al, 2009)<br />

� additional studies warranted for survival <strong>of</strong> Clostridia and<br />

fastidious anaerobic organisms


<strong>E<strong>swab</strong></strong> Literature<br />

• MRSA <strong>E<strong>swab</strong></strong> collection kit TM<br />

– Pooled samples <strong>of</strong> nares, (throat) and per<strong>in</strong>eum<br />

� multiple tests: culture, PCR<br />

� sampl<strong>in</strong>g bias<br />

� costs<br />

– higher MRSA recovery than <strong>with</strong> conventional <strong>swab</strong><br />

systems (Venturi Transystem, Copan: Smismans et al, 2009; Stuart liquid<br />

transystem, Copan: Giambra and Castriciano, 2007 and Fontana et al, 2008)


<strong>E<strong>swab</strong></strong> Literature<br />

• Wounds: <strong>E<strong>swab</strong></strong> vs charcoal <strong>swab</strong> <strong>in</strong> Stuart<br />

transport medium (Friis-Moller et al, 2008)<br />

Pos<br />

<strong>E<strong>swab</strong></strong><br />

Pos<br />

Stuart<br />

Pos<br />

<strong>E<strong>swab</strong></strong><br />

Neg<br />

Stuart<br />

Pos<br />

Stuart<br />

Neg<br />

<strong>E<strong>swab</strong></strong><br />

Neg<br />

Stuart<br />

Neg<br />

<strong>E<strong>swab</strong></strong><br />

P-value<br />

All bacteria 259 62 38 35 0.016<br />

S. aureus 68 9 16 103 0.162<br />

P. aerug<strong>in</strong>osa 27 5 1 163 0.013<br />

Haemolytic<br />

streptococci<br />

14 2 4 176 0.414<br />

anaerobes 4 8 3 181 0.132


<strong>E<strong>swab</strong></strong> Literature<br />

• General remarks <strong>E<strong>swab</strong></strong><br />

• Reliable for molecular test<strong>in</strong>g: nucleic acids stable<br />

up to 15 days at RT (Moore et al, 2008)<br />

• Trichomonas vag<strong>in</strong>alis viability ma<strong>in</strong>ta<strong>in</strong>ed,<br />

although lower sensitivity than UTM Copan (Rivers et<br />

al, 2007)<br />

• Neisseria gonorrhoeae and Chlamydia trachomatis<br />

same sensitivity as conventional <strong>swab</strong>s (BD Probe<br />

Tec TM , APTIMA <strong>swab</strong>) for NAT (Castriciano et al, 2009;<br />

Chernesky et al, 2009)


<strong>E<strong>swab</strong></strong> Literature<br />

• Gram sta<strong>in</strong> <strong>with</strong> <strong>E<strong>swab</strong></strong><br />

– <strong>E<strong>swab</strong></strong> superior quality versus rayon <strong>swab</strong> <strong>in</strong><br />

<strong>Amies</strong> gel (Copan) (Fontana et al, 2009)<br />

• More bacterial morphotypes visualised<br />

• More dist<strong>in</strong>guishable bacterial morphology, i.e.<br />

shape, colour… (diplococci)<br />

• Better detail and higher number <strong>of</strong> human cells<br />

(epithelial cells, leucocytes, red blood cells)<br />

• No <strong>in</strong>fluence <strong>of</strong><br />

– volume used (50 µl – 100 µl)<br />

– time delay for microscopy (2h – 24h – 72h)


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> study<br />

• Copan <strong>E<strong>swab</strong></strong> TM versus<br />

– Blue <strong>swab</strong> <strong>in</strong> <strong>Amies</strong> transport medium (Int. Medical Products)<br />

• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />

species recovery<br />

– Red dry Copan <strong>swab</strong><br />

• Gram sta<strong>in</strong><br />

• Wound <strong>swab</strong>s<br />

– Hospital wards: Septic Orthopaedics (E231), Burn Care Unit<br />

(E519)


<strong>E<strong>swab</strong></strong> study<br />

• Copan <strong>E<strong>swab</strong></strong> TM versus<br />

– Blue <strong>swab</strong> <strong>in</strong> <strong>Amies</strong> transport medium (Int. Medical Products)<br />

• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />

species recovery<br />

– Red dry Copan <strong>swab</strong><br />

• Gram sta<strong>in</strong><br />

• Method: CLSI M40-A<br />

– Quantitative <strong>swab</strong> elution method (125 samples)<br />

– Qualitative roll-plate method (125 samples)


<strong>E<strong>swab</strong></strong> study<br />

• Copan MRSA <strong>E<strong>swab</strong></strong> TM versus<br />

– Red dry Copan <strong>swab</strong>s (1 <strong>of</strong> nares / 1 <strong>of</strong> per<strong>in</strong>eum)<br />

• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />

species recovery; gram sta<strong>in</strong><br />

• MRSA screen<strong>in</strong>g <strong>of</strong> nose and per<strong>in</strong>eum<br />

– Hospital wards: Burn Care Unit (E519), Geriatric Medic<strong>in</strong>e (E640,<br />

E641, E455, E230), General Internal Medic<strong>in</strong>e (E454)


<strong>E<strong>swab</strong></strong> study<br />

• Copan MRSA <strong>E<strong>swab</strong></strong> TM versus<br />

– Red dry Copan <strong>swab</strong>s (1 <strong>of</strong> nares / 1 <strong>of</strong> per<strong>in</strong>eum)<br />

• M<strong>in</strong>imal detection limit; bacterial recovery (CFU/mL);<br />

species recovery; gram sta<strong>in</strong><br />

• Method: CLSI M40-A<br />

– Quantitative <strong>swab</strong> elution method (125 samples)<br />

– Qualitative roll-plate method (125 samples)


<strong>E<strong>swab</strong></strong> study<br />

• Interfer<strong>in</strong>g parameters?<br />

– Time <strong>in</strong>terval from sample collection to process<strong>in</strong>g:<br />

room temperature storage<br />

– Type <strong>of</strong> <strong>swab</strong> used first


<strong>E<strong>swab</strong></strong> study<br />

• M<strong>in</strong>imal detection limit?<br />

– <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />

• 9-fold higher recovery <strong>with</strong> <strong>E<strong>swab</strong></strong><br />

– <strong>E<strong>swab</strong></strong> vs <strong>Amies</strong> gel <strong>swab</strong><br />

• 6-fold higher recovery <strong>with</strong> <strong>E<strong>swab</strong></strong><br />

�Inocula on dry <strong>swab</strong>/<strong>Amies</strong> gel <strong>swab</strong> must be 9/6<br />

times higher to reach similar detectable growth as<br />

<strong>with</strong> <strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> study<br />

• M<strong>in</strong>imal detection limit?<br />

– 1 <strong>E<strong>swab</strong></strong> vs 4 dry <strong>swab</strong>s <strong>with</strong>out growth<br />

– 20 <strong>E<strong>swab</strong></strong>s vs 25 <strong>Amies</strong> gel <strong>swab</strong>s <strong>with</strong>out growth<br />

� <strong>E<strong>swab</strong></strong> lower m<strong>in</strong>imal detection limit


1,E+09<br />

1,E+08<br />

1,E+07<br />

1,E+06<br />

1,E+05<br />

1,E+04<br />

1,E+03<br />

1,E+02<br />

1,E+01<br />

1,E+00<br />

<strong>E<strong>swab</strong></strong> study<br />

• Bacterial recovery? MRSA <strong>E<strong>swab</strong></strong><br />

<strong>E<strong>swab</strong></strong> significant higher<br />

recovery than dry <strong>swab</strong><br />

(paired t-test, p < 0.01)<br />

dry <strong>swab</strong><br />

<strong>E<strong>swab</strong></strong><br />

0 10 20 30 40 50 60 70 80 90<br />

Dry <strong>swab</strong>:


1,E+09<br />

1,E+08<br />

1,E+07<br />

1,E+06<br />

1,E+05<br />

1,E+04<br />

1,E+03<br />

1,E+02<br />

1,E+01<br />

1,E+00<br />

<strong>E<strong>swab</strong></strong> study<br />

• Bacterial recovery? <strong>E<strong>swab</strong></strong> wounds<br />

blue <strong>swab</strong><br />

<strong>E<strong>swab</strong></strong><br />

0 10 20 30 40 50 60<br />

<strong>E<strong>swab</strong></strong> significant higher<br />

recovery than <strong>Amies</strong> gel<br />

<strong>swab</strong> (paired t-test, p < 0.01)<br />

<strong>Amies</strong> gel <strong>swab</strong>:


• Bacterial recovery?<br />

<strong>E<strong>swab</strong></strong> study<br />

– Parameters – MRSA screen<br />

• No <strong>in</strong>fluence <strong>of</strong> time delay at room temperature<br />

until process<strong>in</strong>g<br />

• No <strong>in</strong>fluence <strong>of</strong> <strong>swab</strong> type used first


• Species recovery?<br />

<strong>E<strong>swab</strong></strong> study<br />

– MRSA screen: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />

• Dry <strong>swab</strong> missed 4 MRSA stra<strong>in</strong>s<br />

• <strong>E<strong>swab</strong></strong> missed 3 MRSA stra<strong>in</strong>s<br />

� more MRSAs <strong>with</strong> <strong>E<strong>swab</strong></strong> (p > 0.05)


• Species recovery?<br />

<strong>E<strong>swab</strong></strong> study<br />

– Wounds: <strong>E<strong>swab</strong></strong> vs <strong>Amies</strong> gel <strong>swab</strong>: more<br />

species <strong>with</strong> <strong>E<strong>swab</strong></strong><br />

<strong>E<strong>swab</strong></strong> +,<br />

<strong>Amies</strong> <strong>swab</strong> -<br />

<strong>E<strong>swab</strong></strong> -,<br />

<strong>Amies</strong> <strong>swab</strong> +<br />

Gramnegatives<br />

Staphylococcus<br />

spp./Microco-<br />

coccus spp.<br />

Streptococcus<br />

spp./<br />

Enterococcus<br />

spp.<br />

Coryne-<br />

bacterium<br />

spp.<br />

2 10 7 0<br />

3 1 1 1


<strong>E<strong>swab</strong></strong> study<br />

• Gram sta<strong>in</strong>: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />

– 1 drop <strong>of</strong> vortexed <strong>E<strong>swab</strong></strong> <strong>Amies</strong> medium vs roll<strong>in</strong>g dry<br />

<strong>swab</strong> on slide<br />

– MRSA screen<strong>in</strong>g and wound <strong>swab</strong><br />

Superiority <strong>of</strong><br />

Dry <strong>swab</strong><br />

<strong>E<strong>swab</strong></strong><br />

No. bacterial<br />

morphotypes (%)<br />

No. Bacteria/<br />

HPF (%)<br />

Other cells<br />

(leukocytes,<br />

epithelial cells) (%)<br />

12/149 (8.1) 11/149 (7.4) 9/96 (9.4)<br />

46/149 (30.9) 69/149 (46.3) 14/96 (14.6)


<strong>E<strong>swab</strong></strong> study<br />

• Gram sta<strong>in</strong>: <strong>E<strong>swab</strong></strong> vs dry <strong>swab</strong><br />

– MRSA and wound <strong>swab</strong><br />

� <strong>E<strong>swab</strong></strong> superior Gram sta<strong>in</strong> quality


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> conclusions<br />

• Superiority <strong>of</strong> <strong>E<strong>swab</strong></strong> compared <strong>with</strong> dry<br />

<strong>swab</strong>/<strong>Amies</strong> gel <strong>swab</strong> <strong>in</strong> terms <strong>of</strong><br />

– ‘M<strong>in</strong>imal detection limit’<br />

– Bacterial recovery (CFU/mL)<br />

– Species recovery<br />

– Gram sta<strong>in</strong> quality


<strong>E<strong>swab</strong></strong> conclusions<br />

• Cl<strong>in</strong>ical-organisational impact<br />

– Several lab tests <strong>with</strong> a s<strong>in</strong>gle sample (rapid<br />

antigen test<strong>in</strong>g, culture, PCR)<br />

– Suitable for automated <strong>swab</strong> process<strong>in</strong>g<br />

systems (AccuPAS, Dynacon; WASP, Copan)


• Cost impact<br />

<strong>E<strong>swab</strong></strong> conclusions<br />

– <strong>E<strong>swab</strong></strong>: expensive <strong>swab</strong> system<br />

Wound <strong>swab</strong>s<br />

1 dry <strong>swab</strong> + 1 <strong>swab</strong> <strong>in</strong><br />

amies medium<br />

↕<br />

1 <strong>E<strong>swab</strong></strong><br />

MRSA screen<strong>in</strong>g<br />

culture PCR + culture<br />

2 dry Copan<br />

<strong>swab</strong><br />

↕<br />

1 <strong>E<strong>swab</strong></strong><br />

1 double Copan <strong>swab</strong><br />

Venturi transystem<br />

↕<br />

1 <strong>E<strong>swab</strong></strong><br />

0,53 € 0,42 € 1,37 €<br />

0,83 € 1,57 € 1,57 €


• Cost impact<br />

<strong>E<strong>swab</strong></strong> conclusions<br />

– <strong>E<strong>swab</strong></strong>: expensive <strong>swab</strong> system<br />

BUT<br />

– Reduced No. <strong>of</strong> samples<br />

– Better performance � higher MRSA detection<br />

rate � shorter length <strong>of</strong> stay � hospital cost


• Introduction<br />

• Literature<br />

• Study UH<strong>Leuven</strong><br />

• Conclusions<br />

• To do / actions<br />

<strong>E<strong>swab</strong></strong>


<strong>E<strong>swab</strong></strong> To do<br />

• F<strong>in</strong>alisation <strong>of</strong> <strong>swab</strong> study<br />

• Introduction <strong>of</strong> <strong>E<strong>swab</strong></strong> depend<strong>in</strong>g on price?

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