Zea mays - Purdue Genomics Wiki

BLASTX 2.2.27+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.
RID: 6M87A48R01N
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
20,807,219 sequences; 7,133,276,155 total letters
Query= sequence_6
Length=150000
E
Sequences producing significant alignments:
Value
Score
(Bits)
gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Z... 1832
0.0
ref|NP_001108121.1| starch branching enzyme III [Zea mays] >g... 1805
0.0
gb|AAL75982.1|AF466203_11 putative prpol [Zea mays] 1660
0.0
gb|AAL75984.1|AF466203_13 putative prpol [Zea mays] 1483
0.0
gb|AAL75973.1|AF466203_2 putative gypsy-type retrotransposon ... 1462
0.0
gb|AAL66751.1|AF464738_2 putative gag-pol precursor [Zea mays... 1456
0.0
gb|AAL75981.1|AF466203_10 putative gag-pol precursor -orf1 [Z... 1347
0.0
gb|AAP94590.1| Cinful1 polyprotein [Zea mays] 1285
0.0
gb|AAN40029.1| putative gag-pol precursor [Zea mays] 1087
0.0
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 910
0.0
gb|ABF67921.1| Ji1 putative pol protein [Zea mays] 909

0.0
gb|ACA21859.1| Opie2a pol protein [Zea mays] 884
0.0
gb|AAL35398.1| Opie2 pol [Zea mays] 883
0.0
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana] 895
0.0
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 916
0.0
gb|AAC49502.1| Pol [Zea mays] 887
0.0
gb|ABF67947.1| Opie2 pol protein [Zea mays] 887
0.0
gb|ABF67946.1| putative Opie4 pol protein [Zea mays] 886
0.0
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. me... 885
0.0
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana] 884
0.0
gb|AAL35396.1| Opie2a pol [Zea mays] >gb|ACA21858.1| Opie2a p... 882
0.0
gb|ABF67934.1| Opie3 pol polyprotein [Zea mays] 882
0.0
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 909
0.0
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays] 897
0.0
gb|AAL76007.1|AF466646_15 prpol [Zea mays] 862
0.0
gb|AAD11615.1| prpol [Zea mays] 851
0.0
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 858
0.0
gb|AAL75996.1|AF466646_4 putative gag protein [Zea mays] 789
0.0
gb|AAP94591.1| Zeon1 gag protein [Zea mays] 763
0.0
gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays] 804
0.0
gb|AAK73110.1|AF391808_20 Zeon1 gag protein [Zea mays] >gb|AC... 761
0.0
ref|NP_001183750.1| uncharacterized protein LOC100502343 [Zea... 753
0.0
gb|ACN33468.1| unknown [Zea mays] 737
0.0
gb|AAD09019.1| copia protein [Zea mays] 713

0.0
gb|AAP94592.1| retrotransposon Opie-2 [Zea mays] 754
0.0
gb|ACF86871.1| unknown [Zea mays] 660
0.0
ref|NP_001141693.1| uncharacterized protein LOC100273822 [Zea... 660
0.0
gb|AAP94585.1| putative gag-pol precursor [Zea mays] 679
0.0
pir||S58484 gag protein - maize >gb|AAA93147.1| gag [Zea mays] 575
0.0
gb|ABF67953.1| CACTA TnpD transposase [Zea mays] 601
0.0
gb|AAC01574.1| hypothetical protein [Zea mays] 567
1e-180
ref|NP_001131521.1| uncharacterized protein LOC100192860 [Zea... 570
1e-180
gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays] 547
7e-169
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein ... 561
2e-165
gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea m... 560
4e-164
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays] 556
6e-163
gb|AAD20308.1| gag protein [Zea mays] 507
1e-161
gb|ABF67926.1| Milt1a putative polyprotein [Zea mays] 520
9e-157
gb|AAL75487.1|AF466202_13 putative gag-pol precursor -orf2 [Z... 464
1e-142
gb|AAG17043.1|AF187822_1 transposase [Zea mays] 466
2e-140
gb|AAA66266.1| unknown protein [Zea mays] 468
2e-140
prf||1206239A ORF 1 467
3e-140
ref|NP_001143420.1| uncharacterized protein LOC100276067 prec... 436
6e-137
ref|NP_001105370.1| starch branching enzyme1 [Zea mays] >gb|A... 432
2e-129
dbj|BAA01854.1| branching enzyme-I precursor [Zea mays] 432
3e-129
gb|AAD11616.1| prpol [Zea mays] 420
3e-129
gb|ABQ15209.1| starch branching enzyme I [Zea mays] 429

3e-128
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon ... 443
3e-128
gb|AAO20100.1| starch branching enzyme I [Zea mays] 429
4e-128
gb|AAP94593.1| putative retrotransposon protein [Zea mays] 407
2e-126
gb|ACF87376.2| unknown [Zea mays] 414
2e-126
gb|AAB67316.1| starch branching enzyme IIa [Zea mays] 419
6e-125
gb|AAB33385.1| branching enzyme II BEII [Zea mays, cultivar B... 414
8e-124
ref|NP_001105316.1| 1,4-alpha-glucan-branching enzyme 2, chlo... 415
1e-123
gb|AAC33764.1| starch branching enzyme IIb [Zea mays] 413
5e-123
gb|ACF87587.1| unknown [Zea mays] 254
6e-123
ref|NP_001132503.1| uncharacterized protein LOC100193963 [Zea... 255
1e-122
gb|ABO25741.1| starch branching enzyme IIb [Zea mays] 411
4e-122
gb|ACF82475.1| unknown [Zea mays] 253
4e-122
gb|ACF84529.1| unknown [Zea mays] 253
7e-122
ref|NP_001144724.1| uncharacterized protein LOC100277766 prec... 386
1e-119
gb|ABA08422.1| polymerase [Zea mays] 377
4e-118
gb|ABA08423.1| polymerase [Zea mays] 377
7e-118
gb|ACR35057.1| unknown [Zea mays] 373
2e-116
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopsc... 405
3e-115
gb|AAC01575.1| hypothetical protein [Zea mays] 349
2e-108
gb|AAL66756.1|AF464738_7 putative prpol [Zea mays] 371
5e-107
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea... 150
1e-105
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] >g... 149
2e-105
gb|AAM22642.1|AF464767_1 gag/pol protein [Zea mays] 335

8e-104
gb|ACN30754.1| unknown [Zea mays] 327
2e-97
ref|NP_001132840.1| uncharacterized protein LOC100194332 [Zea... 199
4e-95
ref|NP_001146361.1| uncharacterized protein LOC100279939 prec... 214
8e-93
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays] 331
3e-92
gb|AAK16154.1|AF326577_2 gag protein [Zea mays] 301
7e-91
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Z... 307
1e-84
gb|AAD55677.1| putative transposase protein [Zea mays] 299
2e-84
ref|NP_001169213.1| uncharacterized protein LOC100383069 [Zea... 278
1e-83
gb|AAL66758.1|AF464738_9 putative pol protein [Zea mays] 279
9e-83
gb|AAD12998.1| pol polyprotein [Zea mays] 296
4e-82
gb|AAL76006.1|AF466646_14 putative retrotransposon protein [Z... 294
6e-82
gb|AAP94598.1| putative transposase protein [Zea mays] 286
1e-80
gb|AAL66752.1|AF464738_3 putative transposase [Zea mays] 286
2e-80
gb|AAD12997.1| gag-pol polyprotein [Zea mays] 293
5e-80
gb|ACL52900.1| unknown [Zea mays] 256
6e-77
gb|ACF84101.1| unknown [Zea mays] 246
1e-73
gb|ACF81125.2| unknown [Zea mays] 256
2e-72
gb|ABF67931.1| Elote1 putative polyprotein [Zea mays] 266
2e-72
ref|NP_001150719.1| seven-transmembrane-domain protein 1 [Zea... 154
6e-69
gb|AAA33448.1| reverse transcriptase, partial [Zea mays] 241
9e-66
ALIGNMENTS
>gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea mays]
Length=1007

Score = 1832 bits (4745), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 922/1068 (86%), Positives = 957/1068 (90%), Gaps = 61/1068
(6%)
Frame = +2
Query 126899 MPGIPRDVAEHSLDI*AGA*PMKQPLRRFDEEKRRGIGEEIHKLMAAGFIKEVFHPEWLA
127078
MPGIPRDVAEHSLDI AGA P++QPLRRFDEEKRR IGEEIHKLMAA FIKEVFHPEWLA
Sbjct 1 MPGIPRDVAEHSLDIRAGARPVRQPLRRFDEEKRRVIGEEIHKLMAARFIKEVFHPEWLA
60
Query 127079 NPVLVRKKGGKWRMCVDYTGLNKACPKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQI
127258
NPVLVRKKGGKWRMCVDYTGLNKAC KVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQI
Sbjct 61 NPVLVRKKGGKWRMCVDYTGLNKACLKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQI
120
Query 127259 RMKESDQLATSFITPFGMYCYITMPFGLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVV
127438
RMKESDQLATSFITPFGMYCY+TMPFGLRNAGATY RCMNHVFGEHIGRTVEAYVDDIVV
Sbjct 121 RMKESDQLATSFITPFGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVV
180
Query 127439 KTRKASDLLSDLETTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAI
127618
KTRKASDLLSDLE TFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKI AI
Sbjct 181 KTRKASDLLSDLEVTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAI
240
Query 127619 TNMGPIKDLKGVQRVMGCLAALSRFISRFGERGLPLYRLLRKAECFT*TPEAEEALGNLK
127798
T+MGPIKDLKGVQRVMGCLAALSRFISR GERGLPLYRLLRKAECF TPEAEEALGNLK
Sbjct 241 TSMGPIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRLLRKAECFAWTPEAEEALGNLK
300
Query 127799 ALLTNAPILVPPAAGEALLIYVVATTQVVSAAIVVERREEGHALPVQRPVYFISEVLSET
127978
ALLT AP+LVPPA GEALL+YV ATTQVVSAAIVVER+EEGHALPVQRPVYFISEVLSET
Sbjct 301 ALLTKAPVLVPPADGEALLVYVAATTQVVSAAIVVERQEEGHALPVQRPVYFISEVLSET
360
Query 127979 KIRYPQIQKLLYAVILTRRKLRHYFESHPVIVVSSFPLGEIIQCREASGRIAK*AVEIMG
128158
KIRYPQ+QKLLYAVILTRRKLRHYFESHPV VVSSFPLGEIIQCREASGRIAK AVEIMG
Sbjct 361 KIRYPQVQKLLYAVILTRRKLRHYFESHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMG

420
Query 128159 ETISFAPRKAIKSQVLADFVAEWVDT*LPIAPIQPELWTMFFDGSLMKIGAGAGLLFISP
128338
ETISFAPRKAIKSQVLADFVAEWVDT L PIQPELWTMFFDGSLMK GAGAGLLFISP
Sbjct 421 ETISFAPRKAIKSQVLADFVAEWVDTQLSTTPIQPELWTMFFDGSLMKTGAGAGLLFISP
480
Query 128339 LGKHLRYVLRLHFPASNNVAKYEALVNGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCR
128518
LGKHLRYVLRLHFPASNNVA+YEALVNGL IAI+LGVRRL+ARGDSQLVIDQVMKNSHCR
Sbjct 481 LGKHLRYVLRLHFPASNNVAEYEALVNGLRIAIKLGVRRLDARGDSQLVIDQVMKNSHCR
540
Query 128519 DPKMEAYCDEVRRLEDKFYGLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPS
128698
DPKMEAYCDEVRRLEDKF+GLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPS
Sbjct 541 DPKMEAYCDEVRRLEDKFFGLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPS
600
Query 128699 VKTDNTpkpekasaqpeapsaqpeapsaqpeapsTPEGEALRVEGEQSRVTPNRNWQTPY
128878
VK D+
+PE PSAQPE PS PEGEAL VE QS TP+++WQ PY
Sbjct 601 VKLDDA--------------PEPEVPSAQPEVPSAPEGEALNVEEGQSGATPDQDWQAPY
646
Query 128879 LQYLHRGELPLDraearrlarraKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEI
129058
LQYL RGELPLD+ EARR+ARRAKSFVLLGD +ELYHRSPSGILQRCISIAEG+ELLQEI
Sbjct 647 LQYLRRGELPLDQVEARRVARRAKSFVLLGDEEELYHRSPSGILQRCISIAEGRELLQEI
706
Query 129059 HSGACGHHAAPRALVGNTFRQGFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIP
129238
HSGACGHHAAPRALVGN FRQGFYWPTAVADATRIVRTC+GCQFYA++THLPAQALQTIP
Sbjct 707 HSGACGHHAAPRALVGNAFRQGFYWPTAVADATRIVRTCEGCQFYAKRTHLPAQALQTIP
766
Query 129239 ITWPFAVWGLDLVSPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHR
129418
ITWPFAVWGLDLV PLQKAPGGYTHLLVAIDKFSKWI
Sbjct 767 ITWPFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWI-----------------------
803
Query 129419 FGVPNSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRI
129598

Sbjct 804
839
EDHHIRVDWA VAHPM+NGQVERANGMILQGLKPRI
------------------------EDHHIRVDWAAVAHPMSNGQVERANGMILQGLKPRI
Query 129599 YNDLNKFGKRWMKELPLVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYD
129778
YNDLNKFGKRWMKELP VVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYG PR RAY
Sbjct 840 YNDLNKFGKRWMKELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYT
899
Query 129779 DQSNRANREDSLDQLEEARDMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDAQ
129958
+QSN+A+RE+SLDQLEEARD ALLHS RYQQSLRRYHARGV+SR+LQVGDLVLRLRQDA+
Sbjct 900 EQSNQASREESLDQLEEARDRALLHSARYQQSLRRYHARGVQSRELQVGDLVLRLRQDAR
959
Query 129959 GRHKLTPPLEGPFVIAKVLKPGTYKLANSQGEVYSNAWNIR*LRRFYP 130102
GRHKLTPP EGPFVI KVLKPGTYKLAN+QGE+Y NAWNI+ LRRFYP
Sbjct 960 GRHKLTPPWEGPFVITKVLKPGTYKLANNQGEIYGNAWNIKQLRRFYP 1007
Score = 202 bits (515), Expect(3) = 6e-121, Method: Compositional
matrix adjust.
Identities = 118/248 (48%), Positives = 160/248 (65%), Gaps = 2/248 (1%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MKE D+ +TSFITPFG YC++ MP GL+NAG+T+ R V +GR + YVDDIVV
Sbjct 122 MKESDQLATSFITPFGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVVK
181
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++ D L+DL TF ++ ++LNPEKCVFGV +G +LG++VS RGIEANP KI AI
Sbjct 182 TRKASDLLSDLEVTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAIT
241
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
+M P + VQ + G LAAL+RFIS+ ER LP + LR A+ F W E A +LK
Sbjct 242 SMGPIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRLLRKAECFAWTPEAEEALGNLKA
301
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT--*QCPVYYVSEVLTTSK
147875

Sbjct 302
361
L++ +L P LL+YVAA+ VSAA+V E+ EG Q PVY++SEVL+ +K
LLTKAPVLVPPADGEALLVYVAATTQVVSAAIVVERQEEGHALPVQRPVYFISEVLSETK
Query 147876 CNMTKLEK 147899
+++K
Sbjct 362 IRYPQVQK 369
Score = 148 bits (374), Expect(3) = 6e-121, Method: Compositional
matrix adjust.
Identities = 84/233 (36%), Positives = 120/233 (52%), Gaps = 23/233 (10%)
Frame = +2
Query 148532 DALAKAAARGETLPSDVFYHVIGTPPVR------------------NPEGLQVTNDAEGH
148657
D LAK A+ T+P DVF + P V+ PEG + N EG
Sbjct 575 DELAKIASGRTTVPPDVFSRDLHQPSVKLDDAPEPEVPSAQPEVPSAPEG-EALNVEEGQ
633
Query 148658 HIVNLIMTKDWRAPITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGDQ--LYKKGISQPML
148831
+DW+AP +L+ D EA+R+ R+K FVL+GD+ LY + S +
Sbjct 634 S--GATPDQDWQAPYLQYLRRGELPLDQVEARRVARRAKSFVLLGDEEELYHRSPSGILQ
691
Query 148832 KCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQKF
149011
+C++ EG ++L+E+HS CG H+ PRAL QGFYWP + + R+CE CQ +
Sbjct 692 RCISIAEGRELLQEIHSGACGHHAAPRALVGNAFRQGFYWPTAVADATRIVRTCEGCQFY
751
Query 149012 SPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEYFTK*IE
149170
+ R+ P+Q + I TWP WGLD+VGPL A G V ++ F+K IE
Sbjct 752 AKRTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWIE 804
Score = 130 bits (328), Expect(3) = 6e-121, Method: Compositional
matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (54%), Gaps = 5/204 (2%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV++ RKLR YFE+ V V S LGE+ + EAS IAKWA ++ G I+F P

Sbjct 368
427
QKLLYAVILTRRKLRHYFESHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAP
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRY
148254
R IK QVL DF+ +W ++WT+ D + GAGA + SP RY
Sbjct 428 RKAIKSQVLADFVAEWVDTQLSTTPIQPELWTMFFDGSLMKTGAGAGLLFISPLGKHLRY
487
Query 148255 VARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDP
148434
V RL F +NN+AEYE ++ GLR LGV + DS+++ QV K +DP
Sbjct 488 VLRLHFP-----ASNNVAEYEALVNGLRIAIKLGVRRLDARGDSQLVIDQVMKNSHCRDP
542
Query 148435 ALMQYLTAVRSLEIQFKGLTLQHM 148506
+ Y VR LE +F GL L H+
Sbjct 543 KMEAYCDEVRRLEDKFFGLELNHI 566
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix
adjust.
Identities = 81/198 (41%), Positives = 111/198 (56%), Gaps = 5/198 (3%)
Frame = +1
Query 149326 TKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD--KKGK-WADQLPEVVWALNTTECR
149496
++ + +V HP SNG VERANG I +K R+ +D K GK W +LP VVW+L TT R
Sbjct 808 IRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPSVVWSLRTTPSR
867
Query 149497 ATGFTPFCLLHGSESMTPQEIKHGSPRTN--TSATPDVDEPTSKDLIDGDRVFALQALNK
149670
ATGFTPF L++G+E++ P ++++GSPR T + S D ++ R AL +
Sbjct 868 ATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASREESLDQLEEARDRALLHSAR
927
Query 149671 YQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPKWEGPFIVKSKASPSAYRLST
149850
YQ + H V RE GDLVL R KL P WEGPF++ P Y+L+
Sbjct 928 YQQSLRRYHARGVQSRELQVGDLVLRLRQDARGRHKLTPPWEGPFVITKVLKPGTYKLAN
987
Query 149851 PTGEDLDHSWNIDNLRKF 149904
GE ++WNI LR+F
Sbjct 988 NQGEIYGNAWNIKQLRRF 1005

Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix
adjust.
Identities = 71/160 (44%), Positives = 99/160 (62%), Gaps = 10/160 (6%)
Frame = +2
Query 146804 GVNRTITEHSLSIDPSVRPKKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANI
146983
G+ R + EHSL I RP +Q LR+ ++K E+H+L+ A FI+ V +P WLAN
Sbjct 3 GIPRDVAEHSLDIRAGARPVRQPLRRFDEEKRRVIGEEIHKLMAARFIKEVFHPEWLANP
62
Query 146984 VMVQKKSGKWRMCIDFTSLNKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYY
147163
V+V+KK GKWRMC+D+T LNK+C K +PL RID+IVDS AGCE +S +D +S YHQI
Sbjct 63 VLVRKKGGKWRMCVDYTGLNKACLKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRM
122
Query 147164 EGGRQGQHQF--------HHTLRHVLLHQDAGGTQERWLN 147259
+ Q F + T+ L ++AG T +R +N
Sbjct 123 KESDQLATSFITPFGMYCYVTMPFGL--RNAGATYQRCMN 160
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix
adjust.
Identities = 75/160 (47%), Positives = 100/160 (63%), Gaps = 4/160 (3%)
Frame = -1
Query 61128 KMFSPETPTPV----TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQ
60961
K + E P+ V TT SRA TPF LVYGAEA LP ++ GSPR + + E + +
Sbjct 848 KRWMKELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASR
907
Query 60960 HEDMDFIDEHRWQAAIRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPS
60781
E +D ++E R +A + +ARY Q+L+RYH R V SREL VGDLVLR + HKL+P
Sbjct 908 EESLDQLEEARDRALLHSARYQQSLRRYHARGVQSRELQVGDLVLRLRQDARGRHKLTPP
967
Query 60780 WEGPFKVTEVCRPGCVRLATTKGVPLPNL*NIEHLHKFYP 60661
WEGPF +T+V +PG +LA +G N NI+ L +FYP
Sbjct 968 WEGPFVITKVLKPGTYKLANNQGEIYGNAWNIKQLRRFYP 1007

Score = 38.5 bits (88), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 17/39 (44%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Frame = +3
Query 23499 SIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGK 23615
S +L +C S +EG+EL++ IH G G+H RAL+G
Sbjct 685 SPSGILQRCISIAEGRELLQEIHSGACGHHAAPRALVGN 723
Score = 31.6 bits (70), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 0/35 (0%)
Frame = +1
Query 23620 SFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
+F + FYW V D +VR C+ C Y + + P
Sbjct 724 AFRQGFYWPTAVADATRIVRTCEGCQFYAKRTHLP 758
Score = 25.4 bits (54), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 10/33 (30%), Positives = 17/33 (52%), Gaps = 0/33 (0%)
Frame = +2
Query 23759 PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKW 23857
P W LD++GP+ A G + ++ + KW
Sbjct 770 PFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKW 802
>ref|NP_001108121.1| starch branching enzyme III [Zea mays]
gb|ABY56822.1| starch branching enzyme III precursor [Zea mays]
Length=899
Score = 1805 bits (4675), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 895/899 (99%), Positives = 895/899 (99%), Gaps = 0/899 (0%)
Frame = +3
Query 90198 MASCPLFLLVPRPPPSLVGADRCPGSAGCSDLPTSCRPHPGRRHGYpfrcnssssssapr
90377
MASCPLFLLVPRPPPSLVGADRCPGSAGCSDLPTSCRPHPGRRHGYPFRCNSSSSSSAPR
Sbjct 1 MASCPLFLLVPRPPPSLVGADRCPGSAGCSDLPTSCRPHPGRRHGYPFRCNSSSSSSAPR
60
Query 90378 erpprqrpggrgDAIDPVGFLTKLGVSDRAFAQFLRDRHKALKDRRWELCSRFIDLKEAS

90557
Sbjct 61
120
ERPPRQRPGGRGDAIDPVGFLTKLGVSDRAFAQFLRDRHKALKDRRWELCSRFIDLKEAS
ERPPRQRPGGRGDAIDPVGFLTKLGVSDRAFAQFLRDRHKALKDRRWELCSRFIDLKEAS
Query 90558 SGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFGYWFII
90737
SGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFGYWFII
Sbjct 121 SGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFGYWFII
180
Query 90738 LEDKLREGQEQDEYFFQEYNYVDDYDKGDNGIDADEIMRRMKEEYWEPGEIRSRQSQLEM
90917
LEDKLREGQEQDEYFFQEYNYVDDYDKGDNGIDADEIMRRMKEEYWEPGEIRSRQSQLEM
Sbjct 181 LEDKLREGQEQDEYFFQEYNYVDDYDKGDNGIDADEIMRRMKEEYWEPGEIRSRQSQLEM
240
Query 90918 VVKLYEQMFGPNGPQTEEELGEIPDAQTRYNEFKASQKADSSSQPSYDIIDNGQEFDIFS
91097
VVKLYEQMFGPNGPQTEEELGEIPDAQTRYNEFKASQKADSSSQPSYDIIDNGQEFDIFS
Sbjct 241 VVKLYEQMFGPNGPQTEEELGEIPDAQTRYNEFKASQKADSSSQPSYDIIDNGQEFDIFS
300
Query 91098 VVTDRASFEKFQAKKPPLAYWVEMRKGRIAWLEKYVPTISHKDKYRVYFNTPDGALERIP
91277
VVTDRASFEKFQAKKPPLAYWVEMRKGRIAWLEKYVPTISHKDKYRVYFNTPDGALERIP
Sbjct 301 VVTDRASFEKFQAKKPPLAYWVEMRKGRIAWLEKYVPTISHKDKYRVYFNTPDGALERIP
360
Query 91278 AWAAYVLPDAEGKQSYAVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSF
91457
AWAAYVLPDAEGKQSYAVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSF
Sbjct 361 AWAAYVLPDAEGKQSYAVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSF
420
Query 91458 QEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEA
91637
QEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEA
Sbjct 421 QEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEA
480
Query 91638 HGLGLVVLLDIIHSYASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLH
91817
HGLGLVVLLDIIHSYASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLH
Sbjct 481 HGLGLVVLLDIIHSYASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLH
540

Query 91818 FLLSNLNWWVTEYRIDGFQFHSLSSMLYTHNGFSTFTGAMEEYCNQYVDKDALIYLILAN
91997
FLLSNLNWWVTEYRIDGFQFHSLSSMLYTHNGFSTFTGAMEEYCNQYVDKDALIYLILAN
Sbjct 541 FLLSNLNWWVTEYRIDGFQFHSLSSMLYTHNGFSTFTGAMEEYCNQYVDKDALIYLILAN
600
Query 91998 EMLHRLHPDIVTIAEDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSM
92177
EMLHRLHPDIVTIAEDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSM
Sbjct 601 EMLHRLHPDIVTIAEDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSM
660
Query 92178 NKIIKVLVSSNQNMLSYVENHNQSISGRKSFAEIILNSRECSVGSVDDNLIRASSLLKLM
92357
NKIIKVLVSSNQNMLSYVENHNQSISGRKSFAEIILNSRECSVGSVDDNLIRASSLLKLM
Sbjct 661 NKIIKVLVSSNQNMLSYVENHNQSISGRKSFAEIILNSRECSVGSVDDNLIRASSLLKLM
720
Query 92358 KLITFTTSGGAYLNFMGNEFAHPEKVEFPMPSNDYSFELANRQWELLDKVFHKHIFNFDK
92537
KLITFTTSGG YLNFMGNEFAHPEKVEFPMPSNDYSFELANRQWELLDKVFHKHIFNFDK
Sbjct 721 KLITFTTSGGGYLNFMGNEFAHPEKVEFPMPSNDYSFELANRQWELLDKVFHKHIFNFDK
780
Query 92538 DVMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGE
92717
DVMSLDENERIISRGPPNILHCDDTSMVI FTRGPLFFIFNFNPQVSHQSYRVGVDEAGE
Sbjct 781 DVMSLDENERIISRGPPNILHCDDTSMVIFFTRGPLFFIFNFNPQVSHQSYRVGVDEAGE
840
Query 92718 YQLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLVRILRI
92894
YQLIFN DETKYGGCETLKSSQYMRRT DKRADGCRNSLELALPSRSAQIYKLVRILRI
Sbjct 841 YQLIFNPDETKYGGCETLKSSQYMRRTFDKRADGCRNSLELALPSRSAQIYKLVRILRI
899
>gb|AAL75982.1|AF466203_11 putative prpol [Zea mays]
Length=1854
Score = 1660 bits (4300), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 828/917 (90%), Positives = 858/917 (94%), Gaps = 14/917 (2%)
Frame = +2

Query 127157 KVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPF
127336
+VPYPLPRIDQIVDS AGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCY+TMPF
Sbjct 952 QVPYPLPRIDQIVDSIAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYVTMPF
1011
Query 127337 GLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKL
127516
LRNAGATY RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLE TFRCLKAKGVKL
Sbjct 1012 SLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLEVTFRCLKAKGVKL
1071
Query 127517 NPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFI
127696
NPEKCVFGVPRGMLLGFIVSERGIEANPEKI AIT+MGPIKDLKGVQRVMGCLAALSRFI
Sbjct 1072 NPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAITSMGPIKDLKGVQRVMGCLAALSRFI
1131
Query 127697 SRFGERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVATT
127876
S GERGLPLYRLLRKAECF TPEAEEALGNLKALLT AP+LVPPA GEALL+YV ATT
Sbjct 1132 SHLGERGLPLYRLLRKAECFAWTPEAEEALGNLKALLTKAPVLVPPADGEALLVYVAATT
1191
Query 127877 QVVSAAIVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFE
128056
QVVSAAIVVER+EEGHALPVQRPVYFISEVLSETKIRYPQ+QKLLYAVILTRRKLRHYFE
Sbjct 1192 QVVSAAIVVERQEEGHALPVQRPVYFISEVLSETKIRYPQVQKLLYAVILTRRKLRHYFE
1251
Query 128057 SHPVIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT
128236
SHPV VVSSFPLGEIIQCREASGRIAK AVEIMGETISFAPRKAIKSQVLADFVAEWVDT
Sbjct 1252 SHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAPRKAIKSQVLADFVAEWVDT
1311
Query 128237 *LPIAPIQPELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEALV
128416
LP PIQPELWTMFFDGSLMK GAGAGLLFISPLGKHLRYVLRLHFPASNNVA+YEALV
Sbjct 1312 QLPTTPIQPELWTMFFDGSLMKTGAGAGLLFISPLGKHLRYVLRLHFPASNNVAEYEALV
1371
Query 128417 NGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHI
128596
NGL IAIELGV RL+ARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKF+GLELNHI
Sbjct 1372 NGLRIAIELGVIRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFFGLELNHI

1431
Query 128597 ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeapsaqpeap
128776
ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVK D+
+PE P
Sbjct 1432 ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKLDDA--------------PEPEVP
1477
Query 128777 saqpeapsTPEGEALRVEGEQSRVTPNRNWQTPYLQYLHRGELPLDraearrlarraKSF
128956
SAQPE PS PEGEAL VE QS TP+++WQ PYLQYL RGELPLD+ EARR+ARRAKSF
Sbjct 1478 SAQPEVPSAPEGEALNVEEGQSGATPDQDWQAPYLQYLRRGELPLDQVEARRVARRAKSF
1537
Query 128957 VLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFRQGFYWP
129136
VLLGD +ELYHRSPSGILQRCISIAEG+ELLQEIHSGACGHHAAPRALVGN FRQGFYWP
Sbjct 1538 VLLGDEEELYHRSPSGILQRCISIAEGRELLQEIHSGACGHHAAPRALVGNAFRQGFYWP
1597
Query 129137 TAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQKAPGGYTHL
129316
TAVADATRIVRTC+GCQFYA++THLPAQALQTIPITWPFAVWGLDLV PLQKAPGGYTHL
Sbjct 1598 TAVADATRIVRTCEGCQFYAKRTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPGGYTHL
1657
Query 129317 LVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITNNGTQFTGRKFLDFCED
129496
LVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIIT+NGTQFTG+KFLDFCED
Sbjct 1658 LVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITDNGTQFTGKKFLDFCED
1717
Query 129497 HHIRVDWAIVAHPMTNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPLVVWSLRTTP
129676
HHIRVDWA VAHPM+NGQVERANGMILQGLKPRIYNDLNKFGKRWMKELP VVWSLRTTP
Sbjct 1718 HHIRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPSVVWSLRTTP
1777
Query 129677 SRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLEEARDMALLHS
129856
SRATGFTPFFLVYGAEAILPTDLEYG PR RAY +QSN+A+RE+SLDQLEEARD ALLHS
Sbjct 1778 SRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASREESLDQLEEARDRALLHS
1837
Query 129857 VRYQQSLRRYHARGVRS 129907
RYQQSLR YHARGV+S

Sbjct 1838 ARYQQSLRCYHARGVQS 1854
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 353/406 (87%), Positives = 366/406 (90%), Gaps = 0/406 (0%)
Frame = +1
Query 119686 QGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDLV
119865
+GTYVRPGNS DLRSC QQ GESLRDYIRRFSKQRTELPN+TDSDVIGAFLAGTTCRDLV
Sbjct 487 RGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLV
546
Query 119866 SKLGRKTPTRVSELMDIATKSASGQEAVEAIFRKDKQPQGRQLKDVLEAstqrgtkkkgk
120045
SKLGRKTPTR SELMDIATK ASGQEAVEAIFRKDKQPQGR + EAS RG KKKGK
Sbjct 547 SKLGRKTPTRASELMDIATKFASGQEAVEAIFRKDKQPQGRPSEGAPEASAPRGAKKKGK
606
Query 120046 kksqakrDAADADLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEECAMLRR
120225
KKSQ+KRDAADADLV AAEYKNPRKPPGGANLFDKMLKE CPYHQGPVKHTLEEC MLR
Sbjct 607 KKSQSKRDAADADLVAAAEYKNPRKPPGGANLFDKMLKEPCPYHQGPVKHTLEECVMLRC
666
Query 120226 HFHKAGPPAEGGRAHDNDKKEDHKAGEFPEVHDCFMIYGGQVANASARHRKQERREVCSV
120405
HFH+AGPPAEGGRA D+DK EDH AGEFPEV DCFMIYGG AN SARHRKQERREVCSV
Sbjct 667 HFHRAGPPAEGGRARDDDKNEDHLAGEFPEVRDCFMIYGGHAANTSARHRKQERREVCSV
726
Query 120406 KVAAPVYLDWSDKPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGSSLNIIY
120585
KVAAPVYLDWSDKPITF+Q DHPD VPSPGKYPLVVDPVIG+VRLTKVLMDGGS LNIIY
Sbjct 727 KVAAPVYLDWSDKPITFDQADHPDHVPSPGKYPLVVDPVIGDVRLTKVLMDGGSCLNIIY
786
Query 120586 AETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLTFEVVGF
120765
AETL LLR+DLSSVRAGAAPFHGIIPGKRVQPL +LDL VCFGTPSNFRRETLTFEVVGF
Sbjct 787 AETLKLLRVDLSSVRAGAAPFHGIIPGKRVQPLGRLDLPVCFGTPSNFRRETLTFEVVGF
846
Query 120766 RGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNGHYYIYGYLRHTI 120903
RGTYHAV+GRPCYAKFMAVPNYTYLKLKM GPNG + +H

Sbjct 847 RGTYHAVLGRPCYAKFMAVPNYTYLKLKMLGPNGVITVGPTYKHAF 892
Score = 615 bits (1585), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 348/501 (69%), Positives = 390/501 (78%), Gaps = 3/501 (1%)
Frame = +1
Query 117868 MGSLQQPFQPGTVLRFGSLEFMSLDGGYDMILLPPPRDSDNGGrqparrrwnrrrLPHVA
118047
MGSLQQP +PGTVLRFG+LEFMS DG YDMILLPPPRD DNGGRQPARRR NRRRL V
Sbjct 1 MGSLQQPLRPGTVLRFGTLEFMSFDGSYDMILLPPPRDYDNGGRQPARRRRNRRRLSRVV
60
Query 118048 EEQHsglsrrlprrrrrrqgnqgqagggtslAVERVDGAGAPTGDMSGIDLASETKTSAV
118227
E QHSG R LP +RRRR+G QGQ GG S AVER+D APT +DLA +T+ SAV
Sbjct 61 EGQHSGSLRSLPCQRRRRRGRQGQVGGRASSAVERIDAPDAPTEGTPDVDLAFKTEASAV
120
Query 118228 SPQHANSKRTDDASTLAKDLLGVTLVPETTVQSAPDVTSSPPVDQEVPTDSHLVPFGFSL
118407
P+HA+ ++ DDA LA+ L V L PE TVQ PDVT+S VDQ+VPT+SHL F L
Sbjct 121 PPRHADPEQEDDAGALAESLQDVALEPEMTVQPVPDVTTSLLVDQKVPTNSHLASFRLGL
180
Query 118408 DPPSDFASVEAFIEACPNPLGYGVRSPWDRLTAVSTYEPSGSEEDDEPNFCWDFSGLGNP
118587
+PP+D A EA PL + +RSPWDRLT VSTY PSGSEEDD+P+ WDFSGLGNP
Sbjct 181 NPPNDLVLAGALTEASATPLRFSMRSPWDRLTDVSTYGPSGSEEDDDPSIGWDFSGLGNP
240
Query 118588 SAMRDFMTACDYCLSDCSDGSRSFGDEDCGPSRECFHVDLGGPGEGNHLGITKNGDPPRP
118767
SA+RDFMT CDYCLSDCSDGSRS GDE CGPSRECFH++LG P EGNHLG+ ++GD PRP
Sbjct 241 SAVRDFMTTCDYCLSDCSDGSRSLGDESCGPSRECFHIELGDPSEGNHLGMPEDGDLPRP
300
Query 118768 APRVDILRELAVVPVPAGGQDTQLEQIREMQARLDEGAGTLEPFCRDIGQEWAGQAPTGE
118947
PR DI RELAVVP PAGG D QLEQ+RE QARL+EG G LEP RD+GQ W GQ GE
Sbjct 301 VPRADIPRELAVVPAPAGGYDPQLEQVREAQARLNEGTGALEPIRRDVGQAWVGQPLAGE
360
Query 118948 ARHLPQGIQHRIADDVRARPPPASSGVGQNLAAAVILLHAMPEPSTTEGRRIQGELKNLL
119127

Sbjct 361
420
RHLPQG+QHR+A+DVR RPPPASSGVGQNLA A +L+ AMPEPSTTEGRRIQGELKNLL
IRHLPQGLQHRVANDVRIRPPPASSGVGQNLATAAMLIRAMPEPSTTEGRRIQGELKNLL
Query 119128 EDaavrraessasrrQGYPLELRTATSRFMREASVHTGRMRYTAPAAPGRLGNEHHHRNR
119307
E AA RRAES+ASRRQGYP E ATSRFMREASV+TGR TAPAAPG LGNEHH R+R
Sbjct 421 EGAAARRAESTASRRQGYPSEPHAATSRFMREASVYTGRTCNTAPAAPGHLGNEHHRRDR
480
Query 119308 RAHLDEKVRQGYHPRLGGRYD 119370
RAHLDE+ G + R G +D
Sbjct 481 RAHLDER---GTYVRPGNSWD 498
Score = 197 bits (502), Expect(4) = 2e-149, Method: Compositional
matrix adjust.
Identities = 117/248 (47%), Positives = 158/248 (64%), Gaps = 2/248 (1%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MKE D+ +TSFITPFG YC++ MP L+NAG+T+ R V +GR + YVDDIVV
Sbjct 987 MKESDQLATSFITPFGMYCYVTMPFSLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVVK
1046
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++ D L+DL TF ++ ++LNPEKCVFGV +G +LG++VS RGIEANP KI AI
Sbjct 1047 TRKASDLLSDLEVTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAIT
1106
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
+M P + VQ + G LAAL+RFIS ER LP + LR A+ F W E A +LK
Sbjct 1107 SMGPIKDLKGVQRVMGCLAALSRFISHLGERGLPLYRLLRKAECFAWTPEAEEALGNLKA
1166
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT--*QCPVYYVSEVLTTSK
147875
L++ +L P LL+YVAA+ VSAA+V E+ EG Q PVY++SEVL+ +K
Sbjct 1167 LLTKAPVLVPPADGEALLVYVAATTQVVSAAIVVERQEEGHALPVQRPVYFISEVLSETK
1226
Query 147876 CNMTKLEK 147899
+++K

Sbjct 1227 IRYPQVQK 1234
Score = 163 bits (413), Expect(4) = 2e-149, Method: Compositional
matrix adjust.
Identities = 95/260 (37%), Positives = 135/260 (52%), Gaps = 24/260 (9%)
Frame = +2
Query 148532 DALAKAAARGETLPSDVFYHVIGTPPVR------------------NPEGLQVTNDAEGH
148657
D LAK A+ T+P DVF + P V+ PEG + N EG
Sbjct 1440 DELAKIASGRTTVPPDVFSRDLHQPSVKLDDAPEPEVPSAQPEVPSAPEG-EALNVEEGQ
1498
Query 148658 HIVNLIMTKDWRAPITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGDQ--LYKKGISQPML
148831
+DW+AP +L+ D EA+R+ R+K FVL+GD+ LY + S +
Sbjct 1499 S--GATPDQDWQAPYLQYLRRGELPLDQVEARRVARRAKSFVLLGDEEELYHRSPSGILQ
1556
Query 148832 KCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQKF
149011
+C++ EG ++L+E+HS CG H+ PRAL QGFYWP + + R+CE CQ +
Sbjct 1557 RCISIAEGRELLQEIHSGACGHHAAPRALVGNAFRQGFYWPTAVADATRIVRTCEGCQFY
1616
Query 149012 SPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEYFTK*IEARAVSMI
149191
+ R+ P+Q + I TWP WGLD+VGPL A G V ++ F+K IE R ++ I
Sbjct 1617 AKRTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSI
1676
Query 149192 TSKTAQKFFWQNIVCRFRSP 149251
S+ A FF NI+ RF P
Sbjct 1677 RSEQAVAFF-TNIIHRFGVP 1695
Score = 130 bits (327), Expect(4) = 2e-149, Method: Compositional
matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (54%), Gaps = 5/204 (2%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV++ RKLR YFE+ V V S LGE+ + EAS IAKWA ++ G I+F P
Sbjct 1233 QKLLYAVILTRRKLRHYFESHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAP

1292
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRY
148254
R IK QVL DF+ +W ++WT+ D + GAGA + SP RY
Sbjct 1293 RKAIKSQVLADFVAEWVDTQLPTTPIQPELWTMFFDGSLMKTGAGAGLLFISPLGKHLRY
1352
Query 148255 VARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDP
148434
V RL F +NN+AEYE ++ GLR LGV + DS+++ QV K +DP
Sbjct 1353 VLRLHFP-----ASNNVAEYEALVNGLRIAIELGVIRLDARGDSQLVIDQVMKNSHCRDP
1407
Query 148435 ALMQYLTAVRSLEIQFKGLTLQHM 148506
+ Y VR LE +F GL L H+
Sbjct 1408 KMEAYCDEVRRLEDKFFGLELNHI 1431
Score = 106 bits (265), Expect(4) = 2e-149, Method: Compositional
matrix adjust.
Identities = 62/152 (41%), Positives = 85/152 (56%), Gaps = 5/152 (3%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD--KKGK
149442
DNG QF F DF ++ + +V HP SNG VERANG I +K R+ +D K GK
Sbjct 1701 DNGTQFTGKKFLDFCEDHHIRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGK
1760
Query 149443 -WADQLPEVVWALNTTECRATGFTPFCLLHGSESMTPQEIKHGSPRTN--TSATPDVDEP
149613
W +LP VVW+L TT RATGFTPF L++G+E++ P ++++GSPR T +
Sbjct 1761 RWMKELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASRE
1820
Query 149614 TSKDLIDGDRVFALQALNKYQAQTKA*HDNAV 149709
S D ++ R AL +YQ + H V
Sbjct 1821 ESLDQLEEARDRALLHSARYQQSLRCYHARGV 1852
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix
adjust.
Identities = 73/262 (28%), Positives = 119/262 (45%), Gaps = 26/262 (10%)
Frame = +2

Query 145958 MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARD-VDLRSAPHVDA
146134
MI GG + + + +K++ V V + PV WS P+TFD D D +P
Sbjct 702 MIYGGHAANTSARHRKQERR-EVCSVKVAAPVY-LDWSDKPITFDQADHPDHVPSPGKYP
759
Query 146135 MVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTFPV
146311
+V++ + L KVL+D GS +II+ + + S ++ P +G GK P+
Sbjct 760 LVVDPVIGDVRLTKVLMDGGSCLNIIYAETLKLLRVDLSSVRAGAAPFHGIIPGKRVQPL
819
Query 146312 GKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQ
146491
G+++LP+ F N R E +TF++V Y+A++GR KF + YL +K+ G
Sbjct 820 GRLDLPVCFGTPSNFRRETLTFEVVGFRGTYHAVLGRPCYAKFMAVPNYTYLKLKMLGPN
879
Query 146492 GVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTND-----------EKVKA
146638
GVITV + A +V C+ + E+ D ++
Sbjct 880 GVITVGPTYKHAFEC---------DVECVEYAEALAESEALIADLENLSKEVPDVKRHAG
930
Query 146639 QLQSNDGMKTVPLDPA--TPKQ 146698
+ + +K VPLDP+ T KQ
Sbjct 931 NFEPAETVKAVPLDPSGDTTKQ 952
Score = 58.9 bits (141), Expect(2) = 6e-12, Method: Compositional matrix
adjust.
Identities = 47/53 (89%), Positives = 50/53 (94%), Gaps = 0/53 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKL
126740
GVITVGPTY+HA+ECDVECVEYAEALAESEALIADLE+LSKE PDVKRHAG
Sbjct 880 GVITVGPTYKHAFECDVECVEYAEALAESEALIADLENLSKEVPDVKRHAGNF 932
Score = 36.6 bits (83), Expect(2) = 6e-12, Method: Compositional matrix
adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 0/25 (0%)
Frame = +1
Query 126733 ANFEPAETVKSVPLDPSKQRLQADP 126807

NFEPAETVK+VPLDPS + P
Sbjct 930 GNFEPAETVKAVPLDPSGDTTKQVP 954
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix
adjust.
Identities = 37/80 (46%), Positives = 51/80 (64%), Gaps = 0/80 (0%)
Frame = -1
Query 61095 TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQAA
60916
TT SRA TPF LVYGAEA LP ++ GSPR + + E + + E +D ++E R +A
Sbjct 1775 TTPSRATGFTPFFLVYGAEAILPTDLEYGSPRARAYTEQSNQASREESLDQLEEARDRAL
1834
Query 60915 IRNARYSQALKRYHQRFVHS 60856
+ +ARY Q+L+ YH R V S
Sbjct 1835 LHSARYQQSLRCYHARGVQS 1854
Score = 37.7 bits (86), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query 23475 EGDLFKKESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLG 23612
E +L+ + S +L +C S +EG+EL++ IH G G+H RAL+G
Sbjct 1543 EEELYHR-SPSGILQRCISIAEGRELLQEIHSGACGHHAAPRALVG 1587
Score = 32.0 bits (71), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 0/35 (0%)
Frame = +1
Query 23620 SFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
+F + FYW V D +VR C+ C Y + + P
Sbjct 1589 AFRQGFYWPTAVADATRIVRTCEGCQFYAKRTHLP 1623
Score = 30.0 bits (66), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Frame = +2
Query 23744 IQWS*PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKLVTIQKF-------YWQNII

23902
Sbjct 1632
1689
I W P W LD++GP+ A G + ++ + KW ++ + ++ NII
ITW--PFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNII
Query 23903 DRL 23911
R
Sbjct 1690 HRF 1692
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix
adjust.
Identities = 29/73 (40%), Positives = 41/73 (56%), Gaps = 10/73 (14%)
Frame = +2
Query 147065 FPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF--------HHTLRHVLL
147220
+PL RID+IVDS AGCE +S +D +S YHQI + Q F + T+ L
Sbjct 955 YPLPRIDQIVDSIAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYVTMPFSL-
1013
Query 147221 HQDAGGTQERWLN 147259
++AG T +R +N
Sbjct 1014 -RNAGATYQRCMN 1025
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix
adjust.
Identities = 27/83 (33%), Positives = 41/83 (49%), Gaps = 0/83 (0%)
Frame = -1
Query 61785 YQQHGVEAHLHAVRQEPRETLRAFISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKL
61606
Y + G L + RQ+P E+LR +I F+K R +P I+D+ +I AF G ++ KL
Sbjct 490 YVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKL
549
Query 61605 ATHDVETVTTLFALADKCARATE 61537
+ L +A K A E
Sbjct 550 GRKTPTRASELMDIATKFASGQE 572
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix
adjust.
Identities = 22/88 (25%), Positives = 41/88 (47%), Gaps = 0/88 (0%)
Frame = +2

Query 145166 ELSLCK*QEKETLREYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNL
145345
+L C+ Q E+LR+Y R+F +++LP++ D I ++G L S P
Sbjct 498 DLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRA
557
Query 145346 QELYQLFEKYVRSEELHQHKVESQRKPK 145429
EL + K+ +E + ++P+
Sbjct 558 SELMDIATKFASGQEAVEAIFRKDKQPQ 585
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix
adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 0/75 (0%)
Frame = +2
Query 35717 QGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSA
35896
+G +P + L C Q E L+ Y+RRF + R + P + + VI A + G
Sbjct 487 RGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLV
546
Query 35897 QYFARKPPQTLEKLL 35941
RK P +L+
Sbjct 547 SKLGRKTPTRASELM 561
>gb|AAL75984.1|AF466203_13 putative prpol [Zea mays]
Length=1850
Score = 1483 bits (3838), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 810/1012 (80%), Positives = 866/1012 (86%), Gaps = 0/1012
(0%)
Frame = +1
Query 117868 MGSLQQPFQPGTVLRFGSLEFMSLDGGYDMILLPPPRDSDNGGrqparrrwnrrrLPHVA
118047
MGSLQQP +PGTVLRFG+LEFMS DG YDMILLPPPRD DNGGRQPARRR NRRRLP V
Sbjct 1 MGSLQQPLRPGTVLRFGTLEFMSFDGSYDMILLPPPRDYDNGGRQPARRRRNRRRLPRVV
60
Query 118048 EEQHsglsrrlprrrrrrqgnqgqagggtslAVERVDGAGAPTGDMSGIDLASETKTSAV
118227
E QHSG R LPR+RRRR+G QGQ GG S AVER+D PT +DLA +T+ SAV

Sbjct 61
120
EGQHSGSLRSLPRQRRRRRGRQGQVGGRASSAVERIDAPDTPTEGTPDVDLAFKTEASAV
Query 118228 SPQHANSKRTDDASTLAKDLLGVTLVPETTVQSAPDVTSSPPVDQEVPTDSHLVPFGFSL
118407
P+HA+ ++ DDA LA+ L V L PE VQ PDVT+S VDQ+V T+SHL F L
Sbjct 121 PPRHADPEQEDDAGALAESLQDVALGPEMMVQPVPDVTTSLLVDQKVTTNSHLASFRLGL
180
Query 118408 DPPSDFASVEAFIEACPNPLGYGVRSPWDRLTAVSTYEPSGSEEDDEPNFCWDFSGLGNP
118587
+PP+D A IEA PL + +RSPWDRL VSTY PSGSEEDD+P+ WDFSGLGNP
Sbjct 181 NPPNDLVLAGALIEASATPLRFRMRSPWDRLADVSTYGPSGSEEDDDPSIGWDFSGLGNP
240
Query 118588 SAMRDFMTACDYCLSDCSDGSRSFGDEDCGPSRECFHVDLGGPGEGNHLGITKNGDPPRP
118767
SA+RDFMTACDYCLSDCSDGSRS G+E CGPSRECFH++LGGP EGNHLG+ ++GD PRP
Sbjct 241 SAVRDFMTACDYCLSDCSDGSRSLGNESCGPSRECFHIELGGPSEGNHLGMPEDGDLPRP
300
Query 118768 APRVDILRELAVVPVPAGGQDTQLEQIREMQARLDEGAGTLEPFCRDIGQEWAGQAPTGE
118947
PR DI RELAVVP PAGG D QLEQ+RE QARL+EG G LEP RD+GQ W GQ GE
Sbjct 301 VPRADIPRELAVVPAPAGGYDPQLEQVREAQARLNEGTGALEPIRRDVGQAWVGQPLAGE
360
Query 118948 ARHLPQGIQHRIADDVRARPPPASSGVGQNLAAAVILLHAMPEPSTTEGRRIQGELKNLL
119127
RH PQG+QHR+A++VR RPPPASSGVGQNLA A +L+ AMPEPSTTEGRRIQGELKNLL
Sbjct 361 IRHPPQGLQHRVANNVRTRPPPASSGVGQNLATAAMLIRAMPEPSTTEGRRIQGELKNLL
420
Query 119128 EDaavrraessasrrQGYPLELRTATSRFMREASVHTGRMRYTAPAAPGRLGNEHHHRNR
119307
E AAVRRAES+ASRRQGYP E ATSRFMREASV+TGR R TAPAAPG LGNEHH R+R
Sbjct 421 EGAAVRRAESTASRRQGYPSEPHAATSRFMREASVYTGRTRNTAPAAPGHLGNEHHRRDR
480
Query 119308 RAHLDEKVRQGYHPRLGGRYDSGEDRSPSPEPPGPQAFSrairrapfptrfrtpttitKY
119487
RAHLDE+VR+GYHPR GGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFPTRFR PTTITKY
Sbjct 481 RAHLDERVRRGYHPRRGGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFPTRFRPPTTITKY
540
Query 119488 SGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQ

119667
Sbjct 541
600
SGETRPELWLADYRLAC LGGTDDDNLIIRNLPLFLS TARA LEHLPPGQISNWDDLVQ
SGETRPELWLADYRLACQLGGTDDDNLIIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQ
Query 119668 AFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGT
119847
AFAGNFQGTYVRPGNS DLRSC QQ GESLRDYIRRFSKQRTELPN+TDSDVIGAFLAGT
Sbjct 601 AFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGT
660
Query 119848 TCRDLVSKLGRKTPTRVSELMDIATKSASGQEAVEAIFRKDKQPQGRQLKDVLEAstqrg
120027
TCRDLVSKLGRKTPTR SELMDIATK ASGQEAVEAIFRKDKQPQGR ++V EAS G
Sbjct 661 TCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEAIFRKDKQPQGRASEEVPEASAPCG
720
Query 120028 tkkkgkkksqakrDAADADLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
120207
KKKGK KSQ+KRDA DADLV AAEYKNPRKPPGGANLFDKMLKE CPYHQGPVKHTLEE
Sbjct 721 AKKKGKMKSQSKRDATDADLVAAAEYKNPRKPPGGANLFDKMLKEPCPYHQGPVKHTLEE
780
Query 120208 CAMLRRHFHKAGPPAEGGRAHDNDKKEDHKAGEFPEVHDCFMIYGGQVANASARHRKQER
120387
C MLRRHFH+AGPPAEG RA D+DK EDH AGEFPEV DCFMIYGG VAN SARHRKQER
Sbjct 781 CVMLRRHFHRAGPPAEGDRARDDDKNEDHLAGEFPEVRDCFMIYGGHVANTSARHRKQER
840
Query 120388 REVCSVKVAAPVYLDWSDKPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGS
120567
REVCSVKVAAPVYLDWSDKPITF+Q DHPD VPSPGKYPLVVDPV+GNVRLTKVLMDGGS
Sbjct 841 REVCSVKVAAPVYLDWSDKPITFDQADHPDHVPSPGKYPLVVDPVVGNVRLTKVLMDGGS
900
Query 120568 SLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLT
120747
LNIIYAETL LLR+DLSSVRAGAAPFHGIIPGKRVQPL +LDL VCFGTPSNFRRETLT
Sbjct 901 CLNIIYAETLKLLRVDLSSVRAGAAPFHGIIPGKRVQPLGRLDLPVCFGTPSNFRRETLT
960
Query 120748 FEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNGHYYIYGYLRHTI 120903
FEVVGFRGTYHAV+GRPCYAKFMAVPNYTYLKLKM GPNG + +H
Sbjct 961 FEVVGFRGTYHAVLGRPCYAKFMAVPNYTYLKLKMPGPNGVITVGPTYKHAF 1012

Score = 1373 bits (3554), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 693/773 (90%), Positives = 723/773 (94%), Gaps = 14/773 (2%)
Frame = +2
Query 127157 KVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPF
127336
+VPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCY+TMPF
Sbjct 1072 QVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYVTMPF
1131
Query 127337 GLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKL
127516
GLRNAGATY RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLE TFRCLKAKGVKL
Sbjct 1132 GLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLEVTFRCLKAKGVKL
1191
Query 127517 NPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFI
127696
NPEKCVFGVPRGMLLGFIVSERGIEANPEKI AIT+MGPIKDLKGVQRVMGCLAALSRFI
Sbjct 1192 NPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAITSMGPIKDLKGVQRVMGCLAALSRFI
1251
Query 127697 SRFGERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVATT
127876
SR GERGLPLYRLLRKAECF TPEAEEALGNLKALLT AP+LVPPA GEALL+YV ATT
Sbjct 1252 SRLGERGLPLYRLLRKAECFAWTPEAEEALGNLKALLTKAPVLVPPADGEALLVYVAATT
1311
Query 127877 QVVSAAIVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFE
128056
QVVSAAIVVER+E+GHALPVQRPVYFISEVLSETKIRYPQ+QKLLYAVILTRRKLRHYFE
Sbjct 1312 QVVSAAIVVERQEKGHALPVQRPVYFISEVLSETKIRYPQVQKLLYAVILTRRKLRHYFE
1371
Query 128057 SHPVIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT
128236
SHPV VVSSFPLGEIIQCREASGRIAK AVEIMGETISFAPRKAIKSQVLADFVAEWVDT
Sbjct 1372 SHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAPRKAIKSQVLADFVAEWVDT
1431
Query 128237 *LPIAPIQPELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEALV
128416
LP PIQPELWTMFFDGSLMK GAGAGLLFISPLG+HLRYVLRLHFPASNNVA+YEALV
Sbjct 1432 QLPTTPIQPELWTMFFDGSLMKTGAGAGLLFISPLGRHLRYVLRLHFPASNNVAEYEALV
1491

Query 128417 NGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHI
128596
NGL IAIELGVRRL+ARGDSQLVIDQVMKNSHCRDPKMEAY DEVRRLEDKF+GLELNHI
Sbjct 1492 NGLRIAIELGVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYYDEVRRLEDKFFGLELNHI
1551
Query 128597 ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeapsaqpeap
128776
ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVK D+
+PE P
Sbjct 1552 ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKLDDA--------------PEPEVP
1597
Query 128777 saqpeapsTPEGEALRVEGEQSRVTPNRNWQTPYLQYLHRGELPLDraearrlarraKSF
128956
SAQPE PS PEG AL +E QS TP+++WQ PYLQYL RGELPLD+AEARR+ARRAKSF
Sbjct 1598 SAQPEVPSAPEGGALNIEEGQSGATPDQDWQAPYLQYLRRGELPLDQAEARRVARRAKSF
1657
Query 128957 VLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFRQGFYWP
129136
VLLGD +ELYHRSPSGILQRCISIAEG+ELL+EIHSGACGHHAAPRALV N FRQGFYWP
Sbjct 1658 VLLGDEEELYHRSPSGILQRCISIAEGRELLREIHSGACGHHAAPRALVRNAFRQGFYWP
1717
Query 129137 TAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQKAPGGYTHL
129316
TAVADATRIVRTC+GCQFYA+QTHLPAQALQTIPITWPFAVWGLDLV PLQKAPGGYT+L
Sbjct 1718 TAVADATRIVRTCEGCQFYAKQTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPGGYTYL
1777
Query 129317 LVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITNNGTQFTGRK
129475
LVAIDKFSKWIEVRPLN+IRSEQAVAFFTNII+RFGVPNSIIT+NGTQFTG+
Sbjct 1778 LVAIDKFSKWIEVRPLNNIRSEQAVAFFTNIIYRFGVPNSIITDNGTQFTGKN 1830
Score = 199 bits (507), Expect(3) = 7e-121, Method: Compositional
matrix adjust.
Identities = 117/248 (47%), Positives = 160/248 (65%), Gaps = 2/248 (1%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MKE D+ +TSFITPFG YC++ MP GL+NAG+T+ R V +GR + YVDDIVV
Sbjct 1107 MKESDQLATSFITPFGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGRTVEAYVDDIVVK

1166
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++ D L+DL TF ++ ++LNPEKCVFGV +G +LG++VS RGIEANP KI AI
Sbjct 1167 TRKASDLLSDLEVTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAIT
1226
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
+M P + VQ + G LAAL+RFIS+ ER LP + LR A+ F W E A +LK
Sbjct 1227 SMGPIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRLLRKAECFAWTPEAEEALGNLKA
1286
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT--*QCPVYYVSEVLTTSK
147875
L++ +L P LL+YVAA+ VSAA+V E+ +G Q PVY++SEVL+ +K
Sbjct 1287 LLTKAPVLVPPADGEALLVYVAATTQVVSAAIVVERQEKGHALPVQRPVYFISEVLSETK
1346
Query 147876 CNMTKLEK 147899
+++K
Sbjct 1347 IRYPQVQK 1354
Score = 152 bits (383), Expect(3) = 7e-121, Method: Compositional
matrix adjust.
Identities = 95/260 (37%), Positives = 135/260 (52%), Gaps = 24/260 (9%)
Frame = +2
Query 148532 DALAKAAARGETLPSDVFYHVIGTPPVR------------------NPEGLQVTNDAEGH
148657
D LAK A+ T+P DVF + P V+ PEG N EG
Sbjct 1560 DELAKIASGRTTVPPDVFSRDLHQPSVKLDDAPEPEVPSAQPEVPSAPEG-GALNIEEGQ
1618
Query 148658 HIVNLIMTKDWRAPITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGDQ--LYKKGISQPML
148831
+DW+AP +L+ D EA+R+ R+K FVL+GD+ LY + S +
Sbjct 1619 S--GATPDQDWQAPYLQYLRRGELPLDQAEARRVARRAKSFVLLGDEEELYHRSPSGILQ
1676
Query 148832 KCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQKF
149011
+C++ EG ++LRE+HS CG H+ PRAL QGFYWP + + R+CE CQ +
Sbjct 1677 RCISIAEGRELLREIHSGACGHHAAPRALVRNAFRQGFYWPTAVADATRIVRTCEGCQFY

1736
Query 149012 SPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEYFTK*IEARAVSMI
149191
+ ++ P+Q + I TWP WGLD+VGPL A G + V ++ F+K IE R ++ I
Sbjct 1737 AKQTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPGGYTYLLVAIDKFSKWIEVRPLNNI
1796
Query 149192 TSKTAQKFFWQNIVCRFRSP 149251
S+ A FF NI+ RF P
Sbjct 1797 RSEQAVAFF-TNIIYRFGVP 1815
Score = 130 bits (326), Expect(3) = 7e-121, Method: Compositional
matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (54%), Gaps = 5/204 (2%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV++ RKLR YFE+ V V S LGE+ + EAS IAKWA ++ G I+F P
Sbjct 1353 QKLLYAVILTRRKLRHYFESHPVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAP
1412
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRY
148254
R IK QVL DF+ +W ++WT+ D + GAGA + SP RY
Sbjct 1413 RKAIKSQVLADFVAEWVDTQLPTTPIQPELWTMFFDGSLMKTGAGAGLLFISPLGRHLRY
1472
Query 148255 VARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDP
148434
V RL F +NN+AEYE ++ GLR LGV + DS+++ QV K +DP
Sbjct 1473 VLRLHFP-----ASNNVAEYEALVNGLRIAIELGVRRLDARGDSQLVIDQVMKNSHCRDP
1527
Query 148435 ALMQYLTAVRSLEIQFKGLTLQHM 148506
+ Y VR LE +F GL L H+
Sbjct 1528 KMEAYYDEVRRLEDKFFGLELNHI 1551
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix
adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Frame = -1

Query 62067 GCAALADHLRAVAWLSKFQPHQS-EKYDGMSNPSEFLQVYVTAITAAG-GDTAVMATYFH
61894
G A + +R + ++F+P + KY G + P +L Y A G D ++
Sbjct 514 GPQAFSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIRNLP
573
Query 61893 VALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVRQEPRETLRAF
61714
+ LS AR WL +L PG I +W++L F NF Y + G L + RQ+P E+LR +
Sbjct 574 LFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDY
633
Query 61713 ISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARATE
61537
I F+K R +P I+D+ +I AF G ++ KL + L +A K A E
Sbjct 634 IRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQE
692
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix
adjust.
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 24/256 (9%)
Frame = +2
Query 145958 MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARD-VDLRSAPHVDA
146134
MI GG + + +K++ V V + PV WS P+TFD D D +P
Sbjct 822 MIYGGHVANTSARHRKQERR-EVCSVKVAAPVY-LDWSDKPITFDQADHPDHVPSPGKYP
879
Query 146135 MVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTFPV
146311
+V++ V L KVL+D GS +II+ + + S ++ P +G GK P+
Sbjct 880 LVVDPVVGNVRLTKVLMDGGSCLNIIYAETLKLLRVDLSSVRAGAAPFHGIIPGKRVQPL
939
Query 146312 GKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQ
146491
G+++LP+ F N R E +TF++V Y+A++GR KF + YL +K+PG
Sbjct 940 GRLDLPVCFGTPSNFRRETLTFEVVGFRGTYHAVLGRPCYAKFMAVPNYTYLKLKMPGPN
999
Query 146492 GVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTND-----------EKVKA
146638
GVITV + A +V C+ + E+ D ++
Sbjct 1000 GVITVGPTYKHAFEC---------DVECVEYAEALAESEALIADLENLSKEVPDVKRHAG

1050
Query 146639 QLQSNDGMKTVPLDPA 146686
+ + +K VPLDP+
Sbjct 1051 NFEPAETVKAVPLDPS 1066
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix
adjust.
Identities = 53/195 (27%), Positives = 87/195 (45%), Gaps = 7/195 (4%)
Frame = +2
Query 144866 SPLAPQ-----LQVSPWPANFRA-GTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMA-K
145024
P PQ ++ +P+P FR T +KY+G T P ++ Y++A G DD + +
Sbjct 511 EPPGPQAFSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIR
570
Query 145025 SFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETL
145204
+ + L W LPP I +W L F NFQG +L C+ Q E+L
Sbjct 571 NLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESL
630
Query 145205 REYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRS
145384
R+Y R+F +++LP++ D I ++G L S P EL + K+
Sbjct 631 RDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASG
690
Query 145385 EELHQHKVESQRKPK 145429
+E + ++P+
Sbjct 691 QEAVEAIFRKDKQPQ 705
Score = 59.7 bits (143), Expect(2) = 4e-12, Method: Composition-based
stats.
Identities = 47/56 (84%), Positives = 51/56 (91%), Gaps = 0/56 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKLRAS
126749
GVITVGPTY+HA+ECDVECVEYAEALAESEALIADLE+LSKE PDVKRHAG +
Sbjct 1000 GVITVGPTYKHAFECDVECVEYAEALAESEALIADLENLSKEVPDVKRHAGNFEPA
1055

Score = 36.2 bits (82), Expect(2) = 4e-12, Method: Compositional matrix
adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 0/25 (0%)
Frame = +1
Query 126733 ANFEPAETVKSVPLDPSKQRLQADP 126807
NFEPAETVK+VPLDPS + P
Sbjct 1050 GNFEPAETVKAVPLDPSGDTTKQVP 1074
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix
adjust.
Identities = 46/193 (24%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Frame = +2
Query 35456 LSAELQATPWPPSYKPPQ-LPVFDGHSDPKQFLMSYEATVSSYG-GNASVMAKSFVMAVR
35629
S ++ P+P ++PP + + G + P+ +L Y G + +++ ++ + +
Sbjct 518 FSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIRNLPLFLS
577
Query 35630 SVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
35809
A+ W L PG I++W L +FQG +P + L C Q E L+ Y+RRF
Sbjct 578 DTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRF
637
Query 35810 LRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRA----DND
35977
+ R + P + + VI A + G RK P +L+ ++ +
Sbjct 638 SKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEAI
697
Query 35978 FRQRREEAFRFSE 36016
FR+ ++ R SE
Sbjct 698 FRKDKQPQGRASE 710
Score = 35.8 bits (81), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query 23475 EGDLFKKESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALL 23609
E +L+ + S +L +C S +EG+EL++ IH G G+H RAL+

Sbjct 1663 EEELYHR-SPSGILQRCISIAEGRELLREIHSGACGHHAAPRALV 1706
Score = 33.1 bits (74), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
Frame = +1
Query 23614 KKSFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
+ +F + FYW V D +VR C+ C Y + + P
Sbjct 1707 RNAFRQGFYWPTAVADATRIVRTCEGCQFYAKQTHLP 1743
Score = 30.8 bits (68), Expect(3) = 1e-07, Method: Composition-based
stats.
Identities = 17/63 (27%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Frame = +2
Query 23744 IQWS*PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKLVTIQKF-------YWQNII
23902
I W P W LD++GP+ A G Y ++ + KW ++ + ++ NII
Sbjct 1752 ITW--PFAVWGLDLVGPLQKAPGGYTYLLVAIDKFSKWIEVRPLNNIRSEQAVAFFTNII
1809
Query 23903 DRL 23911
R
Sbjct 1810 YRF 1812
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix
adjust.
Identities = 29/73 (40%), Positives = 41/73 (56%), Gaps = 10/73 (14%)
Frame = +2
Query 147065 FPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF--------HHTLRHVLL
147220
+PL RID+IVDS AGCE +S +D +S YHQI + Q F + T+ L
Sbjct 1075 YPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYVTMPFGL-
1133
Query 147221 HQDAGGTQERWLN 147259
++AG T +R +N
Sbjct 1134 -RNAGATYQRCMN 1145
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix

adjust.
Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 1/72 (1%)
Frame = +3
Query 100899 DGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSWNELENKFHEHFFAGEYELGLA-DLGSV
101075
D + + L L+ TA AW LPP +++W++L F +F G + DL S
Sbjct 563 DDDNLIIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSC
622
Query 101076 *QGREESVNDYI 101111
Q ES+ DYI
Sbjct 623 RQQPGESLRDYI 634
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix
adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
Frame = +3
Query 129489 ARITTSGWTGPSWLTP 129536
ARIT SGWTGP WL P
Sbjct 1835 ARITISGWTGPPWLIP 1850
>gb|AAL75973.1|AF466203_2 putative gypsy-type retrotransposon RIRE2 [Zea
mays]
Length=1082
Score = 1462 bits (3786), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 829/1012 (82%), Positives = 876/1012 (87%), Gaps = 0/1012
(0%)
Frame = +1
Query 117868 MGSLQQPFQPGTVLRFGSLEFMSLDGGYDMILLPPPRDSDNGGrqparrrwnrrrLPHVA
118047
MGSLQQP QPGTVLRFGSLEFMSLDG Y MILLPPPRDSDNGGR+PARRR NRR LP +
Sbjct 1 MGSLQQPLQPGTVLRFGSLEFMSLDGSYGMILLPPPRDSDNGGRRPARRRRNRRHLPRMV
60
Query 118048 EEQHsglsrrlprrrrrrqgnqgqagggtslAVERVDGAGAPTGDMSGIDLASETKTSAV
118227
EEQHS LPR+RRRR+GNQGQAGG S AVER+D APTG +SG+DLA ETK SAV
Sbjct 61 EEQHSSSPLPLPRQRRRRRGNQGQAGGRASSAVERIDIPSAPTGGVSGVDLAFETKASAV
120

Query 118228 SPQHANSKRTDDASTLAKDLLGVTLVPETTVQSAPDVTSSPPVDQEVPTDSHLVPFGFSL
118407
P+HAN ++ DDAS LA+ L V LVP+TT QS PDVT S VDQ+V TDSH F L
Sbjct 121 PPRHANPEQMDDASALAEGLQDVALVPKTTTQSVPDVTMSLLVDQKVLTDSHPTSFRLGL
180
Query 118408 DPPSDFASVEAFIEACPNPLGYGVRSPWDRLTAVSTYEPSGSEEDDEPNFCWDFSGLGNP
118587
+PPSD A A +EA PLG+ +RSPWDRLT VSTY PS SEEDD+P+ CWDFSG GNP
Sbjct 181 NPPSDLALAGALVEASATPLGFRMRSPWDRLTDVSTYGPSRSEEDDDPSICWDFSGFGNP
240
Query 118588 SAMRDFMTACDYCLSDCSDGSRSFGDEDCGPSRECFHVDLGGPGEGNHLGITKNGDPPRP
118767
SAMRDFMTACDYCLSDCSDGSRSF DEDCGPSRECFHV+LG P EGNHLG+ ++GD PRP
Sbjct 241 SAMRDFMTACDYCLSDCSDGSRSFDDEDCGPSRECFHVELGDPSEGNHLGMPEDGDLPRP
300
Query 118768 APRVDILRELAVVPVPAGGQDTQLEQIREMQARLDEGAGTLEPFCRDIGQEWAGQAPTGE
118947
PR DI +ELAVVPVPAGG D QLEQ+R QARLDEGAG LE RD+GQ WAGQ P E
Sbjct 301 VPRADIPQELAVVPVPAGGHDPQLEQVRGAQARLDEGAGALESIRRDVGQVWAGQPPARE
360
Query 118948 ARHLPQGIQHRIADDVRARPPPASSGVGQNLAAAVILLHAMPEPSTTEGRRIQGELKNLL
119127
RHLPQG QHR+A+DVR RPPPASSGVGQNLAAA +LL AMPEPSTTEGRRIQGELKNLL
Sbjct 361 IRHLPQGFQHRVANDVRVRPPPASSGVGQNLAAAAMLLRAMPEPSTTEGRRIQGELKNLL
420
Query 119128 EDaavrraessasrrQGYPLELRTATSRFMREASVHTGRMRYTAPAAPGRLGNEHHHRNR
119307
E AA RRAESSASRRQGYP E ATSRFM EASV+TGR R TAPAAPG LGNEHH R+R
Sbjct 421 EGAAARRAESSASRRQGYPSEPHAATSRFMWEASVYTGRTRNTAPAAPGHLGNEHHRRDR
480
Query 119308 RAHLDEKVRQGYHPRLGGRYDSGEDRSPSPEPPGPQAFSrairrapfptrfrtpttitKY
119487
RAHLDE+VR+GYHPR GGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFP RFR PTTITKY
Sbjct 481 RAHLDERVRRGYHPRRGGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFPARFRPPTTITKY
540
Query 119488 SGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQ
119667
SGET PELWLADYRLAC LGGTDDDNLIIRNLPLFLS TARA LEHLPPGQISNWDDLVQ

Sbjct 541
600
SGETGPELWLADYRLACQLGGTDDDNLIIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQ
Query 119668 AFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGT
119847
AFAGNFQGTYVRPGNS DLRSC QQ GESLRDYIRRFSKQRTELPN+TDSDVIGAFLAGT
Sbjct 601 AFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGT
660
Query 119848 TCRDLVSKLGRKTPTRVSELMDIATKSASGQEAVEAIFRKDKQPQGRQLKDVLEAstqrg
120027
TCRDLVSKLGRKTPTR SELMDIATK ASGQEAVEAIFRKDKQPQGR ++ EAST RG
Sbjct 661 TCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEAIFRKDKQPQGRPSEEAPEASTPRG
720
Query 120028 tkkkgkkksqakrDAADADLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
120207
KKKGKKKSQAKRDAADADLV AAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
Sbjct 721 AKKKGKKKSQAKRDAADADLVAAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
780
Query 120208 CAMLRRHFHKAGPPAEGGRAHDNDKKEDHKAGEFPEVHDCFMIYGGQVANASARHRKQER
120387
C MLRRHFHKA PPAEGGRA D+DKKEDH+AGEFPEV DCFMIYGG ANASARHRKQER
Sbjct 781 CVMLRRHFHKARPPAEGGRARDDDKKEDHQAGEFPEVRDCFMIYGGHAANASARHRKQER
840
Query 120388 REVCSVKVAAPVYLDWSDKPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGS
120567
REVCSVKVAAPVYLDWSDKPITFNQ DHPD VPSPGKYPLVVDP++G+VRLTKVLMDGGS
Sbjct 841 REVCSVKVAAPVYLDWSDKPITFNQADHPDHVPSPGKYPLVVDPIVGDVRLTKVLMDGGS
900
Query 120568 SLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLT
120747
LNIIY ETL LLR+D+SSVRAG APFHGIIPGKRVQPL +LDL VCFGTPSNFRRETLT
Sbjct 901 CLNIIYTETLRLLRVDMSSVRAGDAPFHGIIPGKRVQPLGRLDLPVCFGTPSNFRRETLT
960
Query 120748 FEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNGHYYIYGYLRHTI 120903
FEVVGFRGTYH V+GRPCYAKFM VPNYTYLKLKM GPNG + +H
Sbjct 961 FEVVGFRGTYHTVLGRPCYAKFMDVPNYTYLKLKMPGPNGVITVGPTYKHAF 1012
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix
adjust.

Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Frame = -1
Query 62067 GCAALADHLRAVAWLSKFQPHQS-EKYDGMSNPSEFLQVYVTAITAAG-GDTAVMATYFH
61894
G A + +R + ++F+P + KY G + P +L Y A G D ++
Sbjct 514 GPQAFSRAIRRAPFPARFRPPTTITKYSGETGPELWLADYRLACQLGGTDDDNLIIRNLP
573
Query 61893 VALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVRQEPRETLRAF
61714
+ LS AR WL +L PG I +W++L F NF Y + G L + RQ+P E+LR +
Sbjct 574 LFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDY
633
Query 61713 ISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARATE
61537
I F+K R +P I+D+ +I AF G ++ KL + L +A K A E
Sbjct 634 IRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQE
692
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix
adjust.
Identities = 59/185 (32%), Positives = 95/185 (51%), Gaps = 4/185 (2%)
Frame = +2
Query 145958 MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARD-VDLRSAPHVDA
146134
MI GG + + + +K++ V V + PV WS P+TF+ D D +P
Sbjct 822 MIYGGHAANASARHRKQERR-EVCSVKVAAPVY-LDWSDKPITFNQADHPDHVPSPGKYP
879
Query 146135 MVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTFPV
146311
+V++ V L KVL+D GS +II+ + + S ++ + P +G GK P+
Sbjct 880 LVVDPIVGDVRLTKVLMDGGSCLNIIYTETLRLLRVDMSSVRAGDAPFHGIIPGKRVQPL
939
Query 146312 GKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQ
146491
G+++LP+ F N R E +TF++V Y+ ++GR KF + YL +K+PG
Sbjct 940 GRLDLPVCFGTPSNFRRETLTFEVVGFRGTYHTVLGRPCYAKFMDVPNYTYLKLKMPGPN
999
Query 146492 GVITV 146506

GVITV
Sbjct 1000 GVITV 1004
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix
adjust.
Identities = 54/195 (28%), Positives = 88/195 (45%), Gaps = 7/195 (4%)
Frame = +2
Query 144866 SPLAPQ-----LQVSPWPANFRA-GTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMA-K
145024
P PQ ++ +P+PA FR T +KY+G T P ++ Y++A G DD + +
Sbjct 511 EPPGPQAFSRAIRRAPFPARFRPPTTITKYSGETGPELWLADYRLACQLGGTDDDNLIIR
570
Query 145025 SFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETL
145204
+ + L W LPP I +W L F NFQG +L C+ Q E+L
Sbjct 571 NLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESL
630
Query 145205 REYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRS
145384
R+Y R+F +++LP++ D I ++G L S P EL + K+
Sbjct 631 RDYIRRFSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASG
690
Query 145385 EELHQHKVESQRKPK 145429
+E + ++P+
Sbjct 691 QEAVEAIFRKDKQPQ 705
Score = 58.5 bits (140), Expect(3) = 5e-14, Method: Compositional matrix
adjust.
Identities = 47/53 (89%), Positives = 50/53 (94%), Gaps = 0/53 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKL
126740
GVITVGPTY+HA+ECDVECVEYAEALAESEALIADLE+LSKE PDVKRHAG
Sbjct 1000 GVITVGPTYKHAFECDVECVEYAEALAESEALIADLENLSKEVPDVKRHAGNF 1052
Score = 35.8 bits (81), Expect(3) = 5e-14, Method: Compositional matrix
adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%), Gaps = 0/17 (0%)

Frame = +1
Query 126733 ANFEPAETVKSVPLDPS 126783
NFEPAETVK+VPLDPS
Sbjct 1050 GNFEPAETVKAVPLDPS 1066
Score = 27.7 bits (60), Expect(3) = 5e-14, Method: Compositional matrix
adjust.
Identities = 12/17 (71%), Positives = 14/17 (82%), Gaps = 0/17 (0%)
Frame = +2
Query 126782 ANNASKQIRIGSELDPK 126832
+ + SKQIRIGS LDPK
Sbjct 1066 SGDTSKQIRIGSGLDPK 1082
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix
adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Frame = +2
Query 35456 LSAELQATPWPPSYKPPQ-LPVFDGHSDPKQFLMSYEATVSSYG-GNASVMAKSFVMAVR
35629
S ++ P+P ++PP + + G + P+ +L Y G + +++ ++ + +
Sbjct 518 FSRAIRRAPFPARFRPPTTITKYSGETGPELWLADYRLACQLGGTDDDNLIIRNLPLFLS
577
Query 35630 SVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
35809
A+ W L PG I++W L +FQG +P + L C Q E L+ Y+RRF
Sbjct 578 DTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRF
637
Query 35810 LRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLL 35941
+ R + P + + VI A + G RK P +L+
Sbjct 638 SKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELM 681
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix
adjust.
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 5/137 (4%)
Frame = +3
Query 100818 FSKFSSENGRSTHEYIGQFLAHLGELVDGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSW
100997

Sbjct 537
595
+K+S E G + LG D + + L L+ TA AW LPP +++W
ITKYSGETGPELWLADYRLACQLGG-TDDDNLIIRNLPLFLSDTARAWLEHLPPGQISNW
Query 100998 NELENKFHEHFFAGEYELGLA-DLGSV*QGREESVNDYIrrfrdtrnrcfrIHVAD---K
101165
++L F +F G + DL S Q ES+ DYIRRF R I +D
Sbjct 596 DDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNITDSDVIGA
655
Query 101166 ELAGLAFNGLLSYLRDK 101216
LAG L+S L K
Sbjct 656 FLAGTTCRDLVSKLGRK 672
>gb|AAL66751.1|AF464738_2 putative gag-pol precursor [Zea mays]
gb|AAP94597.1| putative gag-pol precursor [Zea mays]
Length=2003
Score = 1456 bits (3770), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 782/1097 (71%), Positives = 831/1097 (76%), Gaps = 111/1097
(10%)
Frame = +2
Query 126836 EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQPLRRFDEEKRRGIGE
127015
EAVLVDFLH NADVFAWSPSDMPGIPRDVAEHS DI AGA P+KQPLRRFDEEKRR IGE
Sbjct 971 EAVLVDFLHVNADVFAWSPSDMPGIPRDVAEHSPDIRAGARPVKQPLRRFDEEKRRAIGE
1030
Query 127016 EIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKACPKVPYPLPRIDQIV
127195
EIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKACPKVPYPLPRIDQI+
Sbjct 1031 EIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKACPKVPYPLPRIDQIM
1090
Query 127196 DSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPFGLRNAGATY*RCM
127375
DSTAGCETLSFLDAYSGYHQIRMKESDQL TSFITPFGMYCY+TMPFGLRNAGA Y RCM
Sbjct 1091 DSTAGCETLSFLDAYSGYHQIRMKESDQLVTSFITPFGMYCYVTMPFGLRNAGAMYQRCM
1150
Query 127376 NHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKLNPEKCVFGVPRGM
127555
NHVFGEHIGR VEAYVDDIVVKTRKASDLLSDLE TFRCLKAKGVKLNPEKCVFGVPRGM

Sbjct 1151
1210
NHVFGEHIGRMVEAYVDDIVVKTRKASDLLSDLEATFRCLKAKGVKLNPEKCVFGVPRGM
Query 127556 LLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFISRFGERGLPLYRL
127735
LLGFIVS+RGIEANPEKI AIT+MG IKDLKGVQRVMGCLAALSRFISR GERGLPLYRL
Sbjct 1211 LLGFIVSKRGIEANPEKIAAITSMGLIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRL
1270
Query 127736 LRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVATTQVVSAAIVVERRE
127915
LRKAECFT TPEAEEALGNLKALLTNAPILVP AAGEALLIYV ATTQVVSAAIVVERRE
Sbjct 1271 LRKAECFTWTPEAEEALGNLKALLTNAPILVPHAAGEALLIYVAATTQVVSAAIVVERRE
1330
Query 127916 EGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHPVIVVSSFPLG
128095
EGHALP+QRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHP VVSSFPLG
Sbjct 1331 EGHALPIQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHPATVVSSFPLG
1390
Query 128096 EIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT*LPIAPIQPELWT
128275
EIIQCREASGRIAK AVEIM E ISF PRKAIKSQVLADFV EWVDT LP PIQPELWT
Sbjct 1391 EIIQCREASGRIAKWAVEIMSEAISFVPRKAIKSQVLADFVVEWVDTQLPTVPIQPELWT
1450
Query 128276 MFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEALVNGLHIAIELG---
128446
MFFDGSLMK GA AGLLFISPLGKHLRYVLRLHFPASNNVA+YEALVNGL IAIELG
Sbjct 1451 MFFDGSLMKTGADAGLLFISPLGKHLRYVLRLHFPASNNVAEYEALVNGLRIAIELGMEA
1510
Query 128447 ----VRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHIARRYNE
128614
VRRL + L ++ + + + ++ + + +L+ + + N+
Sbjct 1511 YRDEVRRLEDKFYG-LELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKIND
1569
Query 128615 TADELA------------KIASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeaps
128758
T + A ++ S ++ P L QP V + + P P A
Sbjct 1570 TPEPEAPSPEPEAPSAQPEVPSSQSEAPSARPEAPLAQPEVPSAQSEPPSARPEAPSARP
1629
Query 128759 aqpeapsaqpeapsTPEGEALRVEGEQSRVTPNRNWQTPYLQYLHRGELPLDraearrla

128938
Sbjct 1630
1672
P P TPEGEALRVE E+S VTPNRNWQTP Y+ E
EAPSVQPEVPS---TPEGEALRVEEERSGVTPNRNWQTPL--YISTEE------------
Query 128939 rraKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFR
129118
+ LG ++ RS C + G C AAP+A
Sbjct 1673 SYPSTEPKLGGWRDAPSRS------SCWGM------------GRCSTTAAPQA-------
1707
Query 129119 QGFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPL-QKA
129295
+ +DA+ + + Y R Q L+ + L +P +KA
Sbjct 1708 -------SFSDASPSPKVRSSYETYTRGLAAITQHLEPL------------LETPSDKKA
1748
Query 129296 PGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITNNGTQFTGRK
129475
PGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIIT+NGTQFTGRK
Sbjct 1749 PGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITDNGTQFTGRK
1808
Query 129476 FLDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPLVV
129655
FLDFCEDHHIRVDWA VAHPMTNGQ
ELP VV
Sbjct 1809 FLDFCEDHHIRVDWAAVAHPMTNGQ-----------------------------ELPSVV
1839
Query 129656 WSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLEEAR
129835
WSLRTTPSRATGFTPFFLVYGAEAILPTDLEYG PRTRAY DQSN+ +REDSLDQLEEAR
Sbjct 1840 WSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRTRAYADQSNQTSREDSLDQLEEAR
1899
Query 129836 DMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDAQGRHKLTPPLEGPFVIAKVL
130015
DMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDA+GRHKLTPP EGPFVIAKVL
Sbjct 1900 DMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDARGRHKLTPPWEGPFVIAKVL
1959
Query 130016 KPGTYKLANSQGEVYSN 130066
KPG YKLANSQGEVYS
Sbjct 1960 KPGMYKLANSQGEVYSK 1976

Score = 1425 bits (3690), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 801/1012 (79%), Positives = 829/1012 (82%), Gaps = 87/1012
(9%)
Frame = +1
Query 117868 MGSLQQPFQPGTVLRFGSLEFMSLDGGYDMILLPPPRDSDNGGrqparrrwnrrrLPHVA
118047
MGSLQQPFQPGTVLRFGSLEFMSLDG YDMILLPPP DSDNGGRQPARRR NRR LP V
Sbjct 1 MGSLQQPFQPGTVLRFGSLEFMSLDGSYDMILLPPPCDSDNGGRQPARRRRNRRSLPRVV
60
Query 118048 EEQHsglsrrlprrrrrrqgnqgqagggtslAVERVDGAGAPTGDMSGIDLASETKTSAV
118227
EEQHS R LPRRRRRR+GNQGQAGGGTS AVERV+GA APTG SGIDLA ETKTSAV
Sbjct 61 EEQHSSSPRPLPRRRRRRRGNQGQAGGGTSSAVERVNGADAPTGGTSGIDLAFETKTSAV
120
Query 118228 SPQHANSKRTDDASTLAKDLLGVTLVPETTVQSAPDVTSSPPVDQEVPTDSHLVPFGFSL
118407
SPQHANSK+TD+ASTLAK LLGVTLVPETTVQS PDVTSSPPVDQEVPTDSHL PFGFSL
Sbjct 121 SPQHANSKQTDNASTLAKGLLGVTLVPETTVQSVPDVTSSPPVDQEVPTDSHLTPFGFSL
180
Query 118408 DPPSDFASVEAFIEACPNPLGYGVRSPWDRLTAVSTYEPSGSEEDDEPNFCWDFSGLGNP
118587
DPPSDF + IEA PNPLG LGNP
Sbjct 181 DPPSDFTLADTLIEASPNPLG-----------------------------------LGNP
205
Query 118588 SAMRDFMTACDYCLSDCSDGSRSFGDEDCGPSRECFHVDLGGPGEGNHLGITKNGDPPRP
118767
SAMRDFMTACDYCLSDCSDGSRS DEDCGPS ECFHVDLGGP EGNHLG+ +NGD PRP
Sbjct 206 SAMRDFMTACDYCLSDCSDGSRSLDDEDCGPSHECFHVDLGGPSEGNHLGMPENGDLPRP
265
Query 118768 APRVDILRELAVVPVPAGGQDTQLEQIREMQARLDEGAGTLEPFCRDIGQEWAGQAPTGE
118947
PRVDILRELAVVPV AGG D QLEQIR +QA LDEGAGTLE +DIGQEWAGQ P E
Sbjct 266 VPRVDILRELAVVPVQAGGHDPQLEQIRGVQAGLDEGAGTLELIRQDIGQEWAGQPPARE
325
Query 118948 ARHLPQGIQHRIADDVRARPPPASSGVGQNLAAAVILLHAMPEPSTTEGRRIQGELKNLL
119127
HLPQGIQHRIADDV+ RPPPASSGVGQNLAAA +LL AMPEPSTTEGRRIQGELKNLL
Sbjct 326 VHHLPQGIQHRIADDVKVRPPPASSGVGQNLAAAAMLLRAMPEPSTTEGRRIQGELKNLL

385
Query 119128 EDaavrraessasrrQGYPLELRTATSRFMREASVHTGRMRYTAPAAPGRLGNEHHHRNR
119307
E AAVRRAES ASRRQGYP E R TSRFMREASVHTGR R TAPAAPGRLGNEHHHRNR
Sbjct 386 EGAAVRRAESFASRRQGYPSEHRATTSRFMREASVHTGRTRDTAPAAPGRLGNEHHHRNR
445
Query 119308 RAHLDEKVRQGYHPRLGGRYDSGEDRSPSPEPPGPQAFSrairrapfptrfrtpttitKY
119487
+AHLDE+V +GYHPR GGRYDSGEDRSPSPEPPGPQAFSRAI+RA FPTRFRTPTTITKY
Sbjct 446 QAHLDERVCRGYHPRRGGRYDSGEDRSPSPEPPGPQAFSRAIQRASFPTRFRTPTTITKY
505
Query 119488 SGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQ
119667
SGETRPELWL DYRLAC LGGTDDDNL+IRNLPLFLS TARA LEHLPPGQISNWDDLVQ
Sbjct 506 SGETRPELWLVDYRLACQLGGTDDDNLVIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQ
565
Query 119668 AFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGT
119847
AFAGNFQG YVRPGNS DLRS Q GESL DYIRRFSKQRTELPN+TDSDVIGAFLAGT
Sbjct 566 AFAGNFQGMYVRPGNSWDLRSYRQHSGESLWDYIRRFSKQRTELPNITDSDVIGAFLAGT
625
Query 119848 TCRDLVSKLGRKTPTRVSELMDIATKSASGQEAVEAIFRKDKQPQGRQLKDVLEAstqrg
120027
TC DLVSKLGRKTPTR SELMDIATK ASGQEA
Sbjct 626 TCHDLVSKLGRKTPTRASELMDIATKFASGQEA---------------------------
658
Query 120028 tkkkgkkksqakrDAADADLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
120207
+KNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
Sbjct 659 -------------------------HKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEE
693
Query 120208 CAMLRRHFHKAGPPAEGGRAHDNDKKEDHKAGEFPEVHDCFMIYGGQVANASARHRKQER
120387
CAMLRRHFH+A PPAEGGRAHD+DKKE H+AGEFPEV DCFMIYGGQ ANASARHRKQER
Sbjct 694 CAMLRRHFHRARPPAEGGRAHDDDKKEGHQAGEFPEVRDCFMIYGGQAANASARHRKQER
753
Query 120388 REVCSVKVAAPVYLDWSDKPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGS
120567

Sbjct 754
813
REVCS+KVAAPVYLDWSDKPITF+Q DHPD VPSPGKYPLVVDP+IG+VRLTK LMDGGS
REVCSIKVAAPVYLDWSDKPITFDQADHPDHVPSPGKYPLVVDPIIGDVRLTKFLMDGGS
Query 120568 SLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLT
120747
SLNIIYAETLGLL +DLSSVRAGAAPFHGII GKRVQPL QLDL V FGTPSNFRRETLT
Sbjct 814 SLNIIYAETLGLLHVDLSSVRAGAAPFHGIIAGKRVQPLGQLDLPVRFGTPSNFRRETLT
873
Query 120748 FEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNGHYYIYGYLRHTI 120903
FEVVGFRG YHAV+GRPCY KFM VPNYTYLKLKMSGPNG + RH
Sbjct 874 FEVVGFRGNYHAVLGRPCYTKFMVVPNYTYLKLKMSGPNGVITVGPTYRHAF 925
Score = 236 bits (603), Expect(3) = 4e-137, Method: Compositional
matrix adjust.
Identities = 148/407 (36%), Positives = 213/407 (52%), Gaps = 37/407 (9%)
Frame = +2
Query 145958 MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARD-VDLRSAPHVDA
146134
MI GG + + + +K++ V + + PV WS P+TFD D D +P
Sbjct 735 MIYGGQAANASARHRKQERR-EVCSIKVAAPVY-LDWSDKPITFDQADHPDHVPSPGKYP
792
Query 146135 MVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTFPV
146311
+V++ + L K L+D GS +II+ + + S ++ P +G GK P+
Sbjct 793 LVVDPIIGDVRLTKFLMDGGSSLNIIYAETLGLLHVDLSSVRAGAAPFHGIIAGKRVQPL
852
Query 146312 GKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQ
146491
G+++LP+ F N R E +TF++V Y+A++GR KF V + YL +K+ G
Sbjct 853 GQLDLPVRFGTPSNFRRETLTFEVVGFRGNYHAVLGRPCYTKFMVVPNYTYLKLKMSGPN
912
Query 146492 GVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTNDEKVKAQLQSNDGMKTV
146671
GVITV + A +V C+ E EA E + A L+S K V
Sbjct 913 GVITVGPTYRHAFEC---------DVECV----EYAEALA--ESEALIADLESLS--KEV
955
Query 146672 P-----LDPATPKQTVVISEDLTSQDEEKLISCLSRNMDVFAWSALDLVGVNRTITEHSL
146836

Sbjct 956
1004
P PK+T E L+ L N DVFAWS D+ G+ R + EHS
PDVKRHAGNFEPKET-----------EAVLVDFLHVNADVFAWSPSDMPGIPRDVAEHSP
Query 146837 SIDPSVRPKKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANIVMVQKKSGKWR
147016
I RP KQ LR+ ++K A E+H+L+ A FI+ V +P WLAN V+V+KK GKWR
Sbjct 1005 DIRAGARPVKQPLRRFDEEKRRAIGEEIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWR
1064
Query 147017 MCIDFTSLNKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQI 147157
MC+D+T LNK+CPK +PL RID+I+DS AGCE +S +D +S YHQI
Sbjct 1065 MCVDYTGLNKACPKVPYPLPRIDQIMDSTAGCETLSFLDAYSGYHQI 1111
Score = 195 bits (495), Expect(3) = 4e-137, Method: Compositional
matrix adjust.
Identities = 117/248 (47%), Positives = 157/248 (63%), Gaps = 2/248 (1%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MKE D+ TSFITPFG YC++ MP GL+NAG+ + R V +GR + YVDDIVV
Sbjct 1113 MKESDQLVTSFITPFGMYCYVTMPFGLRNAGAMYQRCMNHVFGEHIGRMVEAYVDDIVVK
1172
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++ D L+DL TF ++ ++LNPEKCVFGV +G +LG++VS RGIEANP KI AI
Sbjct 1173 TRKASDLLSDLEATFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSKRGIEANPEKIAAIT
1232
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
+M + VQ + G LAAL+RFIS+ ER LP + LR A+ FTW E A +LK
Sbjct 1233 SMGLIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRLLRKAECFTWTPEAEEALGNLKA
1292
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT--*QCPVYYVSEVLTTSK
147875
L+ IL + LL+YVAA+ VSAA+V E+ EG Q PVY++SEVL+ +K
Sbjct 1293 LLTNAPILVPHAAGEALLIYVAATTQVVSAAIVVERREEGHALPIQRPVYFISEVLSETK
1352
Query 147876 CNMTKLEK 147899
+++K

Sbjct 1353 IRYPQIQK 1360
Score = 104 bits (259), Expect(3) = 4e-137, Method: Compositional
matrix adjust.
Identities = 72/204 (35%), Positives = 95/204 (47%), Gaps = 32/204 (16%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV++ RKLR YFE+ V S LGE+ + EAS IAKWA ++ I+F P
Sbjct 1359 QKLLYAVILTRRKLRHYFESHPATVVSSFPLGEIIQCREASGRIAKWAVEIMSEAISFVP
1418
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRY
148254
R IK QVL DF+V+W ++WT+ D + GA A + SP RY
Sbjct 1419 RKAIKSQVLADFVVEWVDTQLPTVPIQPELWTMFFDGSLMKTGADAGLLFISPLGKHLRY
1478
Query 148255 VARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDP
148434
V RL F +NN+AEYE ++ GLR LG+
Sbjct 1479 VLRLHFP-----ASNNVAEYEALVNGLRIAIELGMEA-----------------------
1510
Query 148435 ALMQYLTAVRSLEIQFKGLTLQHM 148506
Y VR LE +F GL L H+
Sbjct 1511 ----YRDEVRRLEDKFYGLELNHI 1530
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix
adjust.
Identities = 67/83 (81%), Positives = 69/83 (83%), Gaps = 0/83 (0%)
Frame = +3
Query 128886 ISTEESYPSTEPKLGDWRGAPSRSSCWGTGRSSTTAAPQVSSSDAYPSPKARSSYKKYTR
129065
ISTEESYPSTEPKLG WR APSRSSCWG GR STTAAPQ S SDA PSPK RSSY+ YTR
Sbjct 1668 ISTEESYPSTEPKLGGWRDAPSRSSCWGMGRCSTTAAPQASFSDASPSPKVRSSYETYTR
1727
Query 129066 GLAVITQRPEPLLETPSDKVSTG 129134
GLA ITQ EPLLETPSDK + G
Sbjct 1728 GLAAITQHLEPLLETPSDKKAPG 1750

Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix
adjust.
Identities = 59/128 (46%), Positives = 83/128 (65%), Gaps = 0/128 (0%)
Frame = -1
Query 61095 TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQAA
60916
TT SRA TPF LVYGAEA LP ++ GSPR + + + + + + +D ++E R A
Sbjct 1844 TTPSRATGFTPFFLVYGAEAILPTDLEYGSPRTRAYADQSNQTSREDSLDQLEEARDMAL
1903
Query 60915 IRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPSWEGPFKVTEVCRPGC
60736
+ + RY Q+L+RYH R V SR+L VGDLVLR + HKL+P WEGPF + +V +PG
Sbjct 1904 LHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDARGRHKLTPPWEGPFVIAKVLKPGM
1963
Query 60735 VRLATTKG 60712
+LA ++G
Sbjct 1964 YKLANSQG 1971
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix
adjust.
Identities = 70/202 (35%), Positives = 96/202 (48%), Gaps = 32/202 (16%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGKWA
149448
DNG QF F DF ++ + +V HP +NG
Sbjct 1799 DNGTQFTGRKFLDFCEDHHIRVDWAAVAHPMTNG--------------------------
1832
Query 149449 DQLPEVVWALNTTECRATGFTPFCLLHGSESMTPQEIKHGSPRTNTSATPDVDEPTSK--
149622
+LP VVW+L TT RATGFTPF L++G+E++ P ++++GSPRT A D TS+
Sbjct 1833 QELPSVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRTRAYA--DQSNQTSRED
1890
Query 149623 --DLIDGDRVFALQALNKYQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPKWE
149796
D ++ R AL +YQ + H V R+ GDLVL R KL P WE
Sbjct 1891 SLDQLEEARDMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDARGRHKLTPPWE
1950

Query 149797 GPFIVKSKASPSAYRLSTPTGE 149862
GPF++ P Y+L+ GE
Sbjct 1951 GPFVIAKVLKPGMYKLANSQGE 1972
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix
adjust.
Identities = 55/192 (29%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
Frame = -1
Query 62067 GCAALADHLRAVAWLSKFQ-PHQSEKYDGMSNPSEFLQVYVTAITAAG-GDTAVMATYFH
61894
G A + ++ ++ ++F+ P KY G + P +L Y A G D ++
Sbjct 479 GPQAFSRAIQRASFPTRFRTPTTITKYSGETRPELWLVDYRLACQLGGTDDDNLVIRNLP
538
Query 61893 VALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVRQEPRETLRAF
61714
+ LS AR WL +L PG I +W++L F NF Y + G L + RQ E+L +
Sbjct 539 LFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGMYVRPGNSWDLRSYRQHSGESLWDY
598
Query 61713 ISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARATEG
61534
I F+K R +P I+D+ +I AF G ++ KL + L +A K A E
Sbjct 599 IRRFSKQRTELPNITDSDVIGAFLAGTTCHDLVSKLGRKTPTRASELMDIATKFASGQEA
658
Query 61533 RAWHSAPQTGVT 61498
P G
Sbjct 659 HKNPRKPPGGAN 670
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix
adjust.
Identities = 50/183 (27%), Positives = 82/183 (45%), Gaps = 6/183 (3%)
Frame = +2
Query 144884 LQVSPWPANFRA-GTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMA-KSFIIALEGPTL
145057
+Q + +P FR T +KY+G T P +++ Y++A G DD + ++ + L
Sbjct 487 IQRASFPTRFRTPTTITKYSGETRPELWLVDYRLACQLGGTDDDNLVIRNLPLFLSDTAR
546
Query 145058 TWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLTLK
145237

Sbjct 547
606
W LPP I +W L F NFQG +L + E+L +Y R+F +
AWLEHLPPGQISNWDDLVQAFAGNFQGMYVRPGNSWDLRSYRQHSGESLWDYIRRFSKQR
Query 145238 SQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSEELHQHKVESQ
145417
++LP++ D I ++G L S P EL + K+ +E H++
Sbjct 607 TELPNITDSDVIGAFLAGTTCHDLVSKLGRKTPTRASELMDIATKFASGQEAHKNP----
662
Query 145418 RKP 145426
RKP
Sbjct 663 RKP 665
Score = 61.2 bits (147), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/53 (92%), Positives = 50/53 (94%), Gaps = 0/53 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKL
126740
GVITVGPTYRHA+ECDVECVEYAEALAESEALIADLESLSKE PDVKRHAG
Sbjct 913 GVITVGPTYRHAFECDVECVEYAEALAESEALIADLESLSKEVPDVKRHAGNF 965
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix
adjust.
Identities = 39/170 (23%), Positives = 73/170 (43%), Gaps = 2/170 (1%)
Frame = +2
Query 35456 LSAELQATPWPPSYKPPQ-LPVFDGHSDPKQFLMSYEATVSSYGGNA-SVMAKSFVMAVR
35629
S +Q +P ++ P + + G + P+ +L+ Y G + +++ ++ + +
Sbjct 483 FSRAIQRASFPTRFRTPTTITKYSGETRPELWLVDYRLACQLGGTDDDNLVIRNLPLFLS
542
Query 35630 SVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
35809
A+ W L PG I++W L +FQG +P + L Q E L Y+RRF
Sbjct 543 DTARAWLEHLPPGQISNWDDLVQAFAGNFQGMYVRPGNSWDLRSYRQHSGESLWDYIRRF
602
Query 35810 LRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEY 35959
+ R + P + + VI A + G RK P +L+ ++
Sbjct 603 SKQRTELPNITDSDVIGAFLAGTTCHDLVSKLGRKTPTRASELMDIATKF 652

Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix
adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 0/56 (0%)
Frame = +3
Query 129981 PWKGRSSSLRF*SPGRTSWQTVKARSTATLGTSDSYVASTLKMLSSRSYTSFTHKV
130148
PW+G + PG + + LGTS+SYVASTLK LSS SYTS KV
Sbjct 1948 PWEGPFVIAKVLKPGMYKLANSQGEVYSKLGTSNSYVASTLKRLSSCSYTSLPCKV
2003
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix
adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 13/133 (10%)
Frame = +3
Query 100899 DGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSWNELENKFHEHFFAGEYELGLA-DLGSV
101075
D + + L L+ TA AW LPP +++W++L F +F G + DL S
Sbjct 528 DDDNLVIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGMYVRPGNSWDLRSY
587
Query 101076 *QGREESVNDYIrrfrdtrnrcfrIHVAD---KELAGLAFNGLLSYLRDK--------LD
101222
Q ES+ DYIRRF R I +D LAG + L+S L K +D
Sbjct 588 RQHSGESLWDYIRRFSKQRTELPNITDSDVIGAFLAGTTCHDLVSKLGRKTPTRASELMD
647
Query 101223 -GTQFFSIAELHQ 101258
T+F S E H+
Sbjct 648 IATKFASGQEAHK 660
>gb|AAL75981.1|AF466203_10 putative gag-pol precursor -orf1 [Zea mays]
Length=1066
Score = 1347 bits (3487), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 714/863 (83%), Positives = 755/863 (87%), Gaps = 0/863 (0%)
Frame = +1
Query 118315 TVQSAPDVTSSPPVDQEVPTDSHLVPFGFSLDPPSDFASVEAFIEACPNPLGYGVRSPWD
118494
TVQ PDVT+S VDQ+VPT+SHL F L+PP+D A IEA L + +RSPWD

Sbjct 2
61
TVQPVPDVTTSLLVDQKVPTNSHLASFRLGLNPPNDLVLAGALIEASATLLRFRMRSPWD
Query 118495 RLTAVSTYEPSGSEEDDEPNFCWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSFGDEDC
118674
RLT VSTY PSGSEEDD+P+ WDFSGLGNPSA+RDFMTACDYCLSDCSDGSRS GDE C
Sbjct 62 RLTDVSTYGPSGSEEDDDPSIGWDFSGLGNPSAVRDFMTACDYCLSDCSDGSRSLGDESC
121
Query 118675 GPSRECFHVDLGGPGEGNHLGITKNGDPPRPAPRVDILRELAVVPVPAGGQDTQLEQIRE
118854
GPSRECFH++LG P EGNHLG+ ++GD PRP PR DI RELAVVP PAGG D QLEQ+RE
Sbjct 122 GPSRECFHIELGDPSEGNHLGMPEDGDLPRPVPRADIPRELAVVPAPAGGYDPQLEQVRE
181
Query 118855 MQARLDEGAGTLEPFCRDIGQEWAGQAPTGEARHLPQGIQHRIADDVRARPPPASSGVGQ
119034
QARL+EG G LEP RD+GQ W GQ GE RHLPQG+QHR+A+DVR RPPPASSGVGQ
Sbjct 182 AQARLNEGTGALEPIRRDVGQAWVGQPLAGEIRHLPQGLQHRVANDVRIRPPPASSGVGQ
241
Query 119035 NLAAAVILLHAMPEPSTTEGRRIQGELKNLLEDaavrraessasrrQGYPLELRTATSRF
119214
NLA A +L+ AMPEPSTTEGRRIQGELKNLLE AA RRA+S+ASRRQGYP E ATSRF
Sbjct 242 NLATAAMLIRAMPEPSTTEGRRIQGELKNLLEGAAARRAKSTASRRQGYPSEPHAATSRF
301
Query 119215 MREASVHTGRMRYTAPAAPGRLGNEHHHRNRRAHLDEKVRQGYHPRLGGRYDSGEDRSPS
119394
MREASV+TGRMR TAPAAPG LGNEHH R+RRAHLDE+VR+GYHPR GGRYDSGEDRSPS
Sbjct 302 MREASVYTGRMRNTAPAAPGHLGNEHHRRDRRAHLDERVRRGYHPRRGGRYDSGEDRSPS
361
Query 119395 PEPPGPQAFSrairrapfptrfrtpttitKYSGETRPELWLADYRLACHLGGTDDDNLII
119574
PEPPGPQAFSRAIRRAPFPTRFR PTTITKYSGETRPELWLADYRLAC LGGTDDDNLII
Sbjct 362 PEPPGPQAFSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLII
421
Query 119575 RNLPLFLSYTARA*LEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSRDLRSCHQQLGES
119754
RNLPLFLS TARA LEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNS DLRSC QQ GES
Sbjct 422 RNLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGES
481
Query 119755 LRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDLVSKLGRKTPTRVSELMDIATKSAS

119934
Sbjct 482
541
LRDYIRRFSKQRTELPN+TDSDVIGAFLAGTT RDLVSKLGRKTPTR SELMDIATK AS
LRDYIRRFSKQRTELPNITDSDVIGAFLAGTTFRDLVSKLGRKTPTRASELMDIATKFAS
Query 119935 GQEAVEAIFRKDKQPQGRQLKDVLEAstqrgtkkkgkkksqakrDAADADLVTAAEYKNP
120114
GQEAVEAIFRKDKQPQGR + EAS RG KKKGKKKSQ+KRDAADADLV AAEYKNP
Sbjct 542 GQEAVEAIFRKDKQPQGRPSEGAPEASAPRGAKKKGKKKSQSKRDAADADLVAAAEYKNP
601
Query 120115 RKPPGGANLFDKMLKESCPYHQGPVKHTLEECAMLRRHFHKAGPPAEGGRAHDNDKKEDH
120294
RKPPGGANLFDKMLKE CPYHQGPVKHTLEEC MLRRHFH+AGPPAEGGRA D+DK EDH
Sbjct 602 RKPPGGANLFDKMLKEPCPYHQGPVKHTLEECVMLRRHFHRAGPPAEGGRARDDDKNEDH
661
Query 120295 KAGEFPEVHDCFMIYGGQVANASARHRKQERREVCSVKVAAPVYLDWSDKPITFNQGDHP
120474
AGEFPEV DCFMIYGG AN SARHRKQERREVCSVKVAAPVYLDWSDKPITF+Q DHP
Sbjct 662 LAGEFPEVRDCFMIYGGHAANTSARHRKQERREVCSVKVAAPVYLDWSDKPITFDQADHP
721
Query 120475 DRVPSPGKYPLVVDPVIGNVRLTKVLMDGGSSLNIIYAETLGLLRIDLSSVRAGAAPFHG
120654
D VPSPGKYPLVVDPVIG+VRLTKVLMDGGS LNIIYAETL LL +DLSSVRAGAAPFHG
Sbjct 722 DHVPSPGKYPLVVDPVIGDVRLTKVLMDGGSCLNIIYAETLKLLSVDLSSVRAGAAPFHG
781
Query 120655 IIPGKRVQPLRQLDLLVCFGTPSNFRRETLTFEVVGFRGTYHAVVGRPCYAKFMAVPNYT
120834
IIPGKRVQPL +LDL VCFGTPSNFRRETL FEVVGFRGTYHAV+GRPCYAKFMAVPNYT
Sbjct 782 IIPGKRVQPLGRLDLPVCFGTPSNFRRETLAFEVVGFRGTYHAVLGRPCYAKFMAVPNYT
841
Query 120835 YLKLKMSGPNGHYYIYGYLRHTI 120903
YLKLKM GPNG + +H
Sbjct 842 YLKLKMPGPNGVITVGPTYKHAF 864
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix
adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Frame = -1
Query 62067 GCAALADHLRAVAWLSKFQPHQS-EKYDGMSNPSEFLQVYVTAITAAG-GDTAVMATYFH

61894
Sbjct 366
425
G A + +R + ++F+P + KY G + P +L Y A G D ++
GPQAFSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIRNLP
Query 61893 VALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVRQEPRETLRAF
61714
+ LS AR WL +L PG I +W++L F NF Y + G L + RQ+P E+LR +
Sbjct 426 LFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDY
485
Query 61713 ISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARATE
61537
I F+K R +P I+D+ +I AF G ++ KL + L +A K A E
Sbjct 486 IRRFSKQRTELPNITDSDVIGAFLAGTTFRDLVSKLGRKTPTRASELMDIATKFASGQE
544
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix
adjust.
Identities = 77/283 (27%), Positives = 124/283 (44%), Gaps = 33/283 (12%)
Frame = +2
Query 145958 MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARD-VDLRSAPHVDA
146134
MI GG + + + +K++ V V + PV WS P+TFD D D +P
Sbjct 674 MIYGGHAANTSARHRKQERR-EVCSVKVAAPVY-LDWSDKPITFDQADHPDHVPSPGKYP
731
Query 146135 MVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTFPV
146311
+V++ + L KVL+D GS +II+ + + S ++ P +G GK P+
Sbjct 732 LVVDPVIGDVRLTKVLMDGGSCLNIIYAETLKLLSVDLSSVRAGAAPFHGIIPGKRVQPL
791
Query 146312 GKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQ
146491
G+++LP+ F N R E + F++V Y+A++GR KF + YL +K+PG
Sbjct 792 GRLDLPVCFGTPSNFRRETLAFEVVGFRGTYHAVLGRPCYAKFMAVPNYTYLKLKMPGPN
851
Query 146492 GVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTND-----------EKVKA
146638
GVITV + A +V C+ + E+ D ++
Sbjct 852 GVITVGPTYKHAFEC---------DVECVEYAEALAESEALIADLENLSKEVPDVKRHAG
902

Query 146639 QLQSNDGMKTVPLDPATPKQTVVISEDLTSQDEEKLISCLSRN 146767
+ + +K VPLDP S D T Q E S L++
Sbjct 903 NFEPAETVKAVPLDP---------SGDTTKQSESDRQSGLAKG 936
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix
adjust.
Identities = 54/81 (67%), Positives = 61/81 (75%), Gaps = 0/81 (0%)
Frame = +1
Query 116776 PMARTQPRPRKTTNSASPDPRARTLPRPRKTTNSASPDPRARTRPRLRKTTNSASPDPRA
116955
P ART+ + RKT NSA PDPRART + RKT NSA PD RARTR + RKT NSA PDPRA
Sbjct 946 PRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDHRARTRAKTRKTANSAPPDPRA
1005
Query 116956 RT*PRLQKTMNSASPDPRAQT 117018
RT + +KT NSA PDPRA+T
Sbjct 1006 RTRAKTRKTANSAPPDPRART 1026
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix
adjust.
Identities = 54/81 (67%), Positives = 61/81 (75%), Gaps = 0/81 (0%)
Frame = +1
Query 116776 PMARTQPRPRKTTNSASPDPRARTLPRPRKTTNSASPDPRARTRPRLRKTTNSASPDPRA
116955
P ART+ + RKT NSA PD RART + RKT NSA PDPRARTR + RKT NSA PDPRA
Sbjct 965 PRARTRAKTRKTANSAPPDHRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDPRA
1024
Query 116956 RT*PRLQKTMNSASPDPRAQT 117018
RT + +KT NSA PDPRA+T
Sbjct 1025 RTRAKTRKTANSAPPDPRART 1045
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix
adjust.
Identities = 53/194 (27%), Positives = 87/194 (45%), Gaps = 7/194 (4%)
Frame = +2
Query 144869 PLAPQ-----LQVSPWPANFRA-GTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMA-KS
145027
P PQ ++ +P+P FR T +KY+G T P ++ Y++A G DD + ++

Sbjct 364
423
PPGPQAFSRAIRRAPFPTRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIRN
Query 145028 FIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLR
145207
+ L W LPP I +W L F NFQG +L C+ Q E+LR
Sbjct 424 LPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLR
483
Query 145208 EYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSE
145387
+Y R+F +++LP++ D I ++G L S P EL + K+ +
Sbjct 484 DYIRRFSKQRTELPNITDSDVIGAFLAGTTFRDLVSKLGRKTPTRASELMDIATKFASGQ
543
Query 145388 ELHQHKVESQRKPK 145429
E + ++P+
Sbjct 544 EAVEAIFRKDKQPQ 557
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix
adjust.
Identities = 48/70 (69%), Positives = 53/70 (76%), Gaps = 0/70 (0%)
Frame = +1
Query 116809 TTNSASPDPRARTLPRPRKTTNSASPDPRARTRPRLRKTTNSASPDPRART*PRLQKTMN
116988
T NSA PDPRART + RKT NSA PDPRARTR + RKT NSA PD RART + +KT N
Sbjct 938 TANSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDHRARTRAKTRKTAN
997
Query 116989 SASPDPRAQT 117018
SA PDPRA+T
Sbjct 998 SAPPDPRART 1007
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix
adjust.
Identities = 43/60 (72%), Positives = 47/60 (78%), Gaps = 0/60 (0%)
Frame = +3
Query 115770 NSASPDPRARTRPRPQKTTNSASPDPRARTRPRLRKTTNSASPDPRARTRPRLRKTTNSA
115949
NSA PDPRARTR + +KT NSA PDPRARTR + RKT NSA PD RARTR + RKT NSA
Sbjct 940 NSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDHRARTRAKTRKTANSA
999

Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix
adjust.
Identities = 43/60 (72%), Positives = 47/60 (78%), Gaps = 0/60 (0%)
Frame = +3
Query 115770 NSASPDPRARTRPRPQKTTNSASPDPRARTRPRLRKTTNSASPDPRARTRPRLRKTTNSA
115949
NSA PDPRARTR + +KT NSA PD RARTR + RKT NSA PDPRARTR + RKT NSA
Sbjct 959 NSAPPDPRARTRAKTRKTANSAPPDHRARTRAKTRKTANSAPPDPRARTRAKTRKTANSA
1018
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix
adjust.
Identities = 43/60 (72%), Positives = 47/60 (78%), Gaps = 0/60 (0%)
Frame = +3
Query 115770 NSASPDPRARTRPRPQKTTNSASPDPRARTRPRLRKTTNSASPDPRARTRPRLRKTTNSA
115949
NSA PD RARTR + +KT NSA PDPRARTR + RKT NSA PDPRARTR + RKT NSA
Sbjct 978 NSAPPDHRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSA
1037
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix
adjust.
Identities = 45/67 (67%), Positives = 50/67 (75%), Gaps = 0/67 (0%)
Frame = +1
Query 116782 ARTQPRPRKTTNSASPDPRARTLPRPRKTTNSASPDPRARTRPRLRKTTNSASPDPRART
116961
ART+ + RKT NSA PDPRART + RKT NSA PDPRARTR + RKT NSA PDPRART
Sbjct 986 ARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDPRART
1045
Query 116962 *PRLQKT 116982
+KT
Sbjct 1046 RANTRKT 1052
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix
adjust.
Identities = 42/57 (74%), Positives = 45/57 (79%), Gaps = 0/57 (0%)
Frame = +3

Query 115770 NSASPDPRARTRPRPQKTTNSASPDPRARTRPRLRKTTNSASPDPRARTRPRLRKTT
115940
NSA PDPRARTR + +KT NSA PDPRARTR + RKT NSA PDPRARTR RKTT
Sbjct 997 NSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSAPPDPRARTRANTRKTT
1053
Score = 58.5 bits (140), Expect(2) = 1e-11, Method: Compositional matrix
adjust.
Identities = 47/53 (89%), Positives = 50/53 (94%), Gaps = 0/53 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKL
126740
GVITVGPTY+HA+ECDVECVEYAEALAESEALIADLE+LSKE PDVKRHAG
Sbjct 852 GVITVGPTYKHAFECDVECVEYAEALAESEALIADLENLSKEVPDVKRHAGNF 904
Score = 36.2 bits (82), Expect(2) = 1e-11, Method: Compositional matrix
adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 1/28 (4%)
Frame = +1
Query 126733 ANFEPAETVKSVPLDPSKQRL-QADPDR 126813
NFEPAETVK+VPLDPS Q++ DR
Sbjct 902 GNFEPAETVKAVPLDPSGDTTKQSESDR 929
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix
adjust.
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 9/219 (4%)
Frame = +2
Query 35327 HLAQDEQHRRPQHQDLHQE---GF-PNEDDWYDNFHHGNFVFDDASP--LSAELQATPWP
35488
HL +E HRR + L + G+ P YD+ + + P S ++ P+P
Sbjct 322 HLG-NEHHRRDRRAHLDERVRRGYHPRRGGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFP
380
Query 35489 PSYKPPQ-LPVFDGHSDPKQFLMSYEATVSSYG-GNASVMAKSFVMAVRSVAQTWYSSLR
35662
++PP + + G + P+ +L Y G + +++ ++ + + A+ W L
Sbjct 381 TRFRPPTTITKYSGETRPELWLADYRLACQLGGTDDDNLIIRNLPLFLSDTARAWLEHLP
440

Query 35663 PGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVP
35842
PG I++W L +FQG +P + L C Q E L+ Y+RRF + R + P +
Sbjct 441 PGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNIT
500
Query 35843 NEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEY 35959
+ VI A + G RK P +L+ ++
Sbjct 501 DSDVIGAFLAGTTFRDLVSKLGRKTPTRASELMDIATKF 539
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix
adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%), Gaps = 0/43 (0%)
Frame = +3
Query 115821 TTNSASPDPRARTRPRLRKTTNSASPDPRARTRPRLRKTTNSA 115949
T NSA PDPRARTR + RKT NSA PDPRARTR + RKT NSA
Sbjct 938 TANSAPPDPRARTRAKTRKTANSAPPDPRARTRAKTRKTANSA 980
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 38/111 (34%), Positives = 51/111 (46%), Gaps = 4/111 (4%)
Frame = +3
Query 100896 VDGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSWNELENKFHEHFFAGEYELGLA-DLGS
101072
D + + L L+ TA AW LPP +++W++L F +F G + DL S
Sbjct 414 TDDDNLIIRNLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRS
473
Query 101073 V*QGREESVNDYIrrfrdtrnrcfrIHVAD---KELAGLAFNGLLSYLRDK 101216
Q ES+ DYIRRF R I +D LAG F L+S L K
Sbjct 474 CRQQPGESLRDYIRRFSKQRTELPNITDSDVIGAFLAGTTFRDLVSKLGRK 524
>gb|AAP94590.1| Cinful1 polyprotein [Zea mays]
Length=977
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 660/877 (75%), Positives = 716/877 (82%), Gaps = 61/877 (7%)
Frame = -1
Query 40824 LSLDEEKNLGFLIAMSKTNTEKITKEILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHS

40645
Sbjct 14
73
LSLDEEKNLGFLIAMSKTNTEKIT+EILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHS
LSLDEEKNLGFLIAMSKTNTEKITREILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHS
Query 40644 VYGKSTIKENHLVNMRGRYFRDLSVVRADEGEKTCPHPEENEVVVFRSFLKAGLRLPLSS
40465
VYGKSTIKENHLVNMRGRYFRDLS+VRADEGEKTCPHPEENEVVV+RSFLKAGLR PLSS
Sbjct 74 VYGKSTIKENHLVNMRGRYFRDLSIVRADEGEKTCPHPEENEVVVYRSFLKAGLRFPLSS
133
Query 40464 FVVEVLKIFEVYLHQLTPEAIIRLNIFVWAVRSQGLKPDAKSFCNMHELSYETIPWGKEQ
40285
FVVEVLKIFEVYLHQLTPEAIIRLNIFVWA RSQGLKPDA+SFCN+HEL YET PWGKEQ
Sbjct 134 FVVEVLKIFEVYLHQLTPEAIIRLNIFVWATRSQGLKPDARSFCNVHELLYETKPWGKEQ
193
Query 40284 YHNNFGCYSFVSRSGSSCPVPTFRKRWPSGWMTEWFYVKNDLKAREDIKGIIMRPIWQSF
40105
YHNNFGCYSFVSRSG+SCPVPTFRKRWP WMTEWFYVKNDL AREDIKGIIMRPIWQSF
Sbjct 194 YHNNFGCYSFVSRSGASCPVPTFRKRWPGDWMTEWFYVKNDLSAREDIKGIIMRPIWQSF
253
Query 40104 GLRRPKVEMNEAAEECQRAFGVVCSFIGTRDLVQEHIAFRVWPLAEKWEMPQETIKEADE
39925
GLRRPKVEMNE AEECQRAFGVVCSFIGTRDLVQEHIAFRVWPLAEKWEMPQETIKEADE
Sbjct 254 GLRRPKVEMNEVAEECQRAFGVVCSFIGTRDLVQEHIAFRVWPLAEKWEMPQETIKEADE
313
Query 39924 GGLIRFKYTFKFGDKFIEPDDEWLKSIDNLSDELLGTYSKAEDNAMSAAFGGRKKKRLNR
39745
G L+RFKYTFKFGDKFIEPDDEWLKSIDNLSDELLGTYSKAEDNAMSAAFGGRKKKRLNR
Sbjct 314 GELVRFKYTFKFGDKFIEPDDEWLKSIDNLSDELLGTYSKAEDNAMSAAFGGRKKKRLNR
373
Query 39744 VFDAIGFVYPDYCYPIRRQKRKNTTsakeevaaapsepepKRKKIKVLTHRPRYIEPASV
39565
VFDAIGFVYPDYCYPIRRQKRKNTTS KEE AAAPSEPEPKRKKIK LTHRPRYIEPASV
Sbjct 374 VFDAIGFVYPDYCYPIRRQKRKNTTSTKEETAAAPSEPEPKRKKIKALTHRPRYIEPASV
433
Query 39564 PEFTGKTSSATEAEKPTEPALLPEIAETAEVPPKIESEQSNILLSETKEKAEVPSTEKIE
39385
PEFTG+ SSA EAE+PT LLPEIA AE PSTEK+E
Sbjct 434 PEFTGEASSAAEAEQPT---LLPEIAVM----------------------AEAPSTEKME
468

Query 39384 EVKEATEGSKTSGVLSPAANIETVKIQKVPAMTPKRKRMANVLDVLETIKSSSTPPKKAA
39205
EVK+ T+ K S VLSPAAN ET K QK P +TPKRKRM NVLDVLETIKSSST PKK+
Sbjct 469 EVKKPTK-EKASEVLSPAANAETAKNQKGPTVTPKRKRMVNVLDVLETIKSSSTTPKKSV
527
Query 39204 VTPEKATEISGSTAPDQEIETEAGPSEPAKIKPLESETEKITKPTFIEETGVVTPEASPK
39025
E +TE A Q+ E EAGPSEP K + LE+E KI+ P +EET PEA
Sbjct 528 EVAEASTE-----ASTQQAEAEAGPSEPFKEQTLEAEAIKISDPILVEETDTAIPEAPAS
582
Query 39024 IRDYILRHASGKKLSEKEEQEAQHYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCR
38845
+ +YI+RHASGKKLSE+E EA HYA++LKYPKGA+IFNG+ E+DFLYCLPD+KE+SVCR
Sbjct 583 MCNYIIRHASGKKLSEEETHEANHYAKELKYPKGAVIFNGTNEDDFLYCLPDNKELSVCR
642
Query 38844 EMSKSFGFPTLEDGLSVLSKNDLADSLAYNSLKVRQMKFLYFSLSPKFFVC*NLMTHTYF
38665
EM++S GFP LE GLS ++K DLADSLAYNSLK
Sbjct 643 EMARSIGFPKLESGLSAMTKEDLADSLAYNSLK---------------------------
675
Query 38664 FLQGLILSNALRAQKDAEDEGCTIALSNLRSEVIELRNEGLEKDKILYSLIDKIKEDEAA
38485
GLILSNALRAQK AEDE IA +NLRSEVI+LRNE LEKDKIL +L+DK+K+DEAA
Sbjct 676 ---GLILSNALRAQKSAEDESYEIAFNNLRSEVIKLRNEALEKDKILLTLVDKVKKDEAA
732
Query 38484 FKSQAEAQKREIEDLRKQLARAKEERILEETKHELSDQWADHLEVTVEELRSSKKRCYNK
38305
K+QAEA K EI+DL+KQLARAKEER LEETK ELSD LE V+ELR+S+ +CY K
Sbjct 733 SKAQAEALKCEIKDLQKQLARAKEERTLEETKRELSDFMVSKLESRVKELRTSQGKCYVK
792
Query 38304 SIDCVKKLKASFAKVAYSQVRKTFREAIPKVSLNGLT 38194
S++CV K+K+SFA V + F P+ L ++
Sbjct 793 SVECVNKIKSSFANVGAFSSEENFSRGNPEGPLEWIS 829
Score = 232 bits (592), Expect = 4e-62, Method: Compositional matrix
adjust.
Identities = 135/217 (62%), Positives = 152/217 (70%), Gaps = 38/217 (18%)
Frame = -3

Query 38287 KIKG*LRQGRVFSSEENFSRGNPEGVIEWIDHEAEAFEEILNSRGDICAFSGARGIATIL
38108
KIK FSSEENFSRGNPEG +EWI HEAEAFEEILNSRGDICAFSGARGIA++L
Sbjct 799 KIKSSFANVGAFSSEENFSRGNPEGPLEWISHEAEAFEEILNSRGDICAFSGARGIASVL
858
Query 38107 EKKGCEHVKILAQSEAALSFEDTKDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKG
37928
EKKGC HVK LAQSEA LS ED KDPSAEAS++GGKFFTDIW++GGREMA EII+ SEKG
Sbjct 859 EKKGCGHVKFLAQSEATLSSEDIKDPSAEASVVGGKFFTDIWNDGGREMAQEIIQSSEKG
918
Query 37927 IHDARevaeavkksaeaEGQLGIN**FLSCCNLRL*DLFTICNSNVAVSRPSSDPTEVSP
37748
IHDAR+VAEA ++S E E QL
SNV
Sbjct 919 IHDARKVAEAAERSTEPERQL------------------ETAGSNV--------------
946
Query 37747 GARPRGDDEIKKMAEAIMDEVVDRLLNEAAEVVLRED 37637
D+EIK+MAE I+D+VVD+L+NEAAE VLRED
Sbjct 947 ------DEEIKQMAETILDKVVDQLVNEAAEAVLRED 977
>gb|AAN40029.1| putative gag-pol precursor [Zea mays]
Length=1313
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 572/669 (86%), Positives = 593/669 (89%), Gaps = 43/669 (6%)
Frame = +2
Query 126836 EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQPLRRFDEEKRRGIGE
127015
EAVLVDFL ANA+VFAWSPSDMPGIPRDVAEHSLDI G+ P+KQPLRRFD+EK R IGE
Sbjct 509 EAVLVDFLRANAEVFAWSPSDMPGIPRDVAEHSLDIRTGSRPVKQPLRRFDKEKCRAIGE
568
Query 127016 EIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKACPKVPYPLPRIDQIV
127195
EIHKLM AGFIKEVFHPEWLANPVLV
PYPLPRIDQIV
Sbjct 569 EIHKLMVAGFIKEVFHPEWLANPVLV-----------------------PYPLPRIDQIV
605
Query 127196 DSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPFGLRNAGATY*RCM
127375

Sbjct 606
665
DSTAGCETLSFLDAYSGYHQI+MKESDQLATSFI PFGMYCY+TMPFGLRNAGATY RCM
DSTAGCETLSFLDAYSGYHQIKMKESDQLATSFIIPFGMYCYVTMPFGLRNAGATYQRCM
Query 127376 NHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKLNPEKCVFGVPRGM
127555
NHVFGEHIGRT+EAYVDDI+VKTRKASD LSDLETTFRCLKAKGVKLNPEKCVFGVPRGM
Sbjct 666 NHVFGEHIGRTIEAYVDDIIVKTRKASDHLSDLETTFRCLKAKGVKLNPEKCVFGVPRGM
725
Query 127556 LLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFISRFGERGLPLYRL
127735
LLGFIVSERGIEANPEKI AITNMGPIKDLKGVQRVMGCLAALSRFISR GERGLPLYRL
Sbjct 726 LLGFIVSERGIEANPEKIAAITNMGPIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRL
785
Query 127736 LRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVATTQVVSAAIVVERRE
127915
LRK ECFT TPEAEEALGNLKALLTNAPILVPPAAGEALLIYV ATTQVVSAAIVVERRE
Sbjct 786 LRKTECFTWTPEAEEALGNLKALLTNAPILVPPAAGEALLIYVAATTQVVSAAIVVERRE
845
Query 127916 EGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHPVIVVSSFPLG
128095
EGHALPVQRPVYFISEVLSETKIRYPQIQKLLYA
SH V VVSSFPLG
Sbjct 846 EGHALPVQRPVYFISEVLSETKIRYPQIQKLLYA-------------SHSVTVVSSFPLG
892
Query 128096 EIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT*LPIAPIQPELWT
128275
EIIQCREASGRIAK AVEIMGETISFAPRKA KSQVLA FVAEWVDT LP A IQPELWT
Sbjct 893 EIIQCREASGRIAKWAVEIMGETISFAPRKATKSQVLAGFVAEWVDTQLPAASIQPELWT
952
Query 128276 MFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEALVNGLHIAIELGVRR
128455
MFFDGSLMK G GAGLLFISPLGKHLR VLRLHFPASNN+A+YEALVNGL IAIELGVRR
Sbjct 953 MFFDGSLMKTGVGAGLLFISPLGKHLRCVLRLHFPASNNMAEYEALVNGLRIAIELGVRR
1012
Query 128456 LNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHIARRYNETADELAK
128635
L+ARGDSQLVIDQV+KNSHCRDPKMEAYCDEVRRLEDKFYGLE+NHIA RYNETADELAK
Sbjct 1013 LDARGDSQLVIDQVIKNSHCRDPKMEAYCDEVRRLEDKFYGLEVNHIAWRYNETADELAK
1072

Query 128636 IASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeapsaqpeapsaqpeapsTPEGE
128815
IAS RTTVPP+VFSRDLHQPSVKT++ P+PEKASA+PEAPSA PEAPSA EGE
Sbjct 1073 IASARTTVPPNVFSRDLHQPSVKTNDMPEPEKASARPEAPSAPPEAPSAT-------EGE
1125
Query 128816 ALRVEGEQS 128842
ALR+E E++
Sbjct 1126 ALRIEEERN 1134
Score = 610 bits (1572), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 332/452 (73%), Positives = 340/452 (75%), Gaps = 78/452 (17%)
Frame = +1
Query 119542 LGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSRD
119721
LGGTDDDNLIIRNLP+FLS TARA LEHLPPGQISNWDDLVQAFAGNFQGTYVRPGN D
Sbjct 88 LGGTDDDNLIIRNLPVFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNFWD
147
Query 119722 LRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDLVSKLGRKTPTRVS
119901
LRSC QQ GESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDL
Sbjct 148 LRSCRQQPGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDL-------------
194
Query 119902 ELMDIATKSASGQEAVEAIFRKDKQPQGRQLKDVLEAstqrgtkkkgkkksqakrDAADA
120081
DKQPQGRQ +DV EAS QRGTKKK KKKSQAKRDA D
Sbjct 195 ----------------------DKQPQGRQPEDVPEASAQRGTKKKNKKKSQAKRDATDV
232
Query 120082 DLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPVKHTLEECAMLRRHFHKAGPPAEGG
120261
+LV AAEYKNPR PPGGANLF +MLKE CPYHQGPVKHTLEEC MLR HFH AGPPAEGG
Sbjct 233 ELVAAAEYKNPRNPPGGANLFARMLKEPCPYHQGPVKHTLEECVMLRHHFHTAGPPAEGG
292
Query 120262 RAHDNDKKEDHKAGEFPEVHDCFMIYGGQVANASARHRKQERREVCSVKVAAPVYLDWSD
120441
RAH+NDKKEDHKA EFPEVHDCFMIYGGQVANASARHRKQE REV SVKVAAPVYLDWSD
Sbjct 293 RAHNNDKKEDHKAEEFPEVHDCFMIYGGQVANASARHRKQECREVSSVKVAAPVYLDWSD
352

Query 120442 KPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGSSLNIIYAETLGLLRIDLS
120621
KPITF+QGDHPDRVPSPGKYPLVVDPVIGNV LTKVLMDGG SLNIIY ETLGLL
Sbjct 353 KPITFDQGDHPDRVPSPGKYPLVVDPVIGNVGLTKVLMDGGISLNIIYVETLGLL-----
407
Query 120622 SVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLTFEVVGFRGTYHAVVGRPC
120801
ETLTFEVVGFRGTYHAV+GR C
Sbjct 408 --------------------------------------ETLTFEVVGFRGTYHAVLGRSC
429
Query 120802 YAKFMAVPNYTYLKLKMSGPNGHYYIYGYLRH 120897
YAKFM VPNYTYLKLKMSGPNG + RH
Sbjct 430 YAKFMVVPNYTYLKLKMSGPNGVITVGPTYRH 461
Score = 367 bits (942), Expect = 2e-103, Method: Compositional matrix
adjust.
Identities = 173/196 (88%), Positives = 177/196 (90%), Gaps = 6/196 (3%)
Frame = +2
Query 129086 APRALVGNTFR------QGFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITW
129247
AP A G R GFYWPTAVADATRIV TCQGCQFYARQTHLPAQALQTIPITW
Sbjct 1118 APSATEGEALRIEEERNGGFYWPTAVADATRIVCTCQGCQFYARQTHLPAQALQTIPITW
1177
Query 129248 PFAVWGLDLVSPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGV
129427
PFAVWGLDLV PLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRS+QAVAFFTNIIHRFGV
Sbjct 1178 PFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSKQAVAFFTNIIHRFGV
1237
Query 129428 PNSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRIYND
129607
PNSIIT+NGTQFTGRKFLDFCEDHHI+VDW VAHPMTNGQVERAN MILQGLKPRIYND
Sbjct 1238 PNSIITDNGTQFTGRKFLDFCEDHHIQVDWVAVAHPMTNGQVERANDMILQGLKPRIYND
1297
Query 129608 LNKFGKRWMKELPLVV 129655
L+KFG RWMKELPLVV
Sbjct 1298 LHKFGMRWMKELPLVV 1313
Score =
208 bits (529), Expect = 7e-54, Method: Compositional matrix

adjust.
Identities = 123/261 (47%), Positives = 166/261 (64%), Gaps = 3/261 (1%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MKE D+ +TSFI PFG YC++ MP GL+NAG+T+ R V +GR I YVDDI+V
Sbjct 628 MKESDQLATSFIIPFGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGRTIEAYVDDIIVK
687
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++ DHL+DL TF ++ ++LNPEKCVFGV +G +LG++VS RGIEANP KI AI
Sbjct 688 TRKASDHLSDLETTFRCLKAKGVKLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIAAIT
747
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
NM P + VQ + G LAAL+RFIS+ ER LP + LR + FTW E A +LK
Sbjct 748 NMGPIKDLKGVQRVMGCLAALSRFISRLGERGLPLYRLLRKTECFTWTPEAEEALGNLKA
807
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREG--TT*QCPVYYVSEVLTTSK
147875
L+ IL P + LL+YVAA+ VSAA+V E+ EG Q PVY++SEVL+ +K
Sbjct 808 LLTNAPILVPPAAGEALLIYVAATTQVVSAAIVVERREEGHALPVQRPVYFISEVLSETK
867
Query 147876 CNMTKLEKTFLRSRHGIAQVA 147938
+++K L + H + V+
Sbjct 868 IRYPQIQK-LLYASHSVTVVS 887
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix
adjust.
Identities = 131/459 (29%), Positives = 192/459 (42%), Gaps = 110/459
(24%)
Frame = +2
Query 145919 EDFPDKPYRGVIH---MITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTF
146089
E+FP+ +H MI GG + + R ++ V+ V + PV WS P+TF
Sbjct 306 EEFPE------VHDCFMIYGGQVAN-ASARHRKQECREVSSVKVAAPVY-LDWSDKPITF
357
Query 146090 DARD-VDLRSAPHVDAMVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPS

146266
Sbjct 358
407
D D D +P +V++ + L KVL+D G +II++ +
DQGDHPDRVPSPGKYPLVVDPVIGNVGLTKVLMDGGISLNIIYVETLGLL----------
Query 146267 NNPLYGFGGKGTFPVGKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEV
146446
E +TF++V Y+A++GR KF V
Sbjct 408 --------------------------------ETLTFEVVGFRGTYHAVLGRSCYAKFMV
435
Query 146447 AIHSLYLCMKIPGLQGVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTNDE
146626
+ YL +K+ G GVITV + A +V C+ E EA E
Sbjct 436 VPNYTYLKLKMSGPNGVITVGPTYRHAYEC---------DVECV----EYVEAL--AESE
480
Query 146627 KVKAQLQSNDGMKTVPLDPATPKQTVVISEDLTSQDEEKLISCLSRNMDVFAWSALDLVG
146806
+ A L+S L P ++ E L+ L N +VFAWS D+ G
Sbjct 481 ALIADLES--------LSKEAPDAKRHAGNFEPAETEAVLVDFLRANAEVFAWSPSDMPG
532
Query 146807 VNRTITEHSLSIDPSVRPKKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANIV
146986
+ R + EHSL I RP KQ LR+ +K A E+H+L+ A FI+ V +P WLAN V
Sbjct 533 IPRDVAEHSLDIRTGSRPVKQPLRRFDKEKCRAIGEEIHKLMVAGFIKEVFHPEWLANPV
592
Query 146987 MVQKKSGKWRMCIDFTSLNKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYE
147166
+V +PL RID+IVDS AGCE +S +D +S YHQI +
Sbjct 593 LVP-----------------------YPLPRIDQIVDSTAGCETLSFLDAYSGYHQIKMK
629
Query 147167 GGRQGQHQF--------HHTLRHVLLHQDAGGTQERWLN 147259
Q F + T+ L ++AG T +R +N
Sbjct 630 ESDQLATSFIIPFGMYCYVTMPFGL--RNAGATYQRCMN 666
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix
adjust.
Identities = 82/101 (81%), Positives = 83/101 (82%), Gaps = 8/101 (8%)
Frame = +1
Query 119068 MPEPSTTEGRRIQGELKNLLEDaavrraessasrrQGYPLELRTATSRFMREASVHTGRM

119247
Sbjct 1
60
MPEPSTTEGRRIQGELKNLLEDAAVRRAESSASRRQGYP E R TSRF+REASVHTGR
MPEPSTTEGRRIQGELKNLLEDAAVRRAESSASRRQGYPSEHRAVTSRFVREASVHTGRT
Query 119248 RYTAPAAPGRLGNEHHHRNRRAHLDEKVRQGYHPRLGGRYD 119370
R TAPAAPGRLGNEHHH N RAHLDE RLGG D
Sbjct 61 RNTAPAAPGRLGNEHHHHNHRAHLDE--------RLGGTDD 93
Score = 82.4 bits (202), Expect(2) = 3e-23, Method: Compositional matrix
adjust.
Identities = 41/104 (39%), Positives = 58/104 (56%), Gaps = 1/104 (1%)
Frame = +2
Query 148940 GFYWPAIICAKN*VTRSCEACQKFSPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQG
149119
GFYWP + + +C+ CQ ++ ++ P+Q + I TWP WGLD+VGPL A G
Sbjct 1136 GFYWPTAVADATRIVCTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVGPLQKAPG
1195
Query 149120 NLKFTFVIVEYFTK*IEARAVSMITSKTAQKFFWQNIVCRFRSP 149251
V ++ F+K IE R ++ I SK A FF NI+ RF P
Sbjct 1196 GYTHLLVAIDKFSKWIEVRPLNSIRSKQAVAFF-TNIIHRFGVP 1238
Score = 51.6 bits (122), Expect(2) = 3e-23, Method: Compositional matrix
adjust.
Identities = 29/70 (41%), Positives = 39/70 (56%), Gaps = 3/70 (4%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD--KKG-
149439
DNG QF F DF ++ + +V HP +NG VERAN I +K R+ +D K G
Sbjct 1244 DNGTQFTGRKFLDFCEDHHIQVDWVAVAHPMTNGQVERANDMILQGLKPRIYNDLHKFGM
1303
Query 149440 KWADQLPEVV 149469
+W +LP VV
Sbjct 1304 RWMKELPLVV 1313
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix
adjust.
Identities = 66/187 (35%), Positives = 93/187 (50%), Gaps = 5/187 (3%)
Frame = +1

Query 147946 FEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEPRTTIK*QVLVDFIVDWT
148125
+ + V V S LGE+ + EAS IAKWA ++ G I+F PR K QVL F+ +W
Sbjct 878 YASHSVTVVSSFPLGEIIQCREASGRIAKWAVEIMGETISFAPRKATKSQVLAGFVAEWV
937
Query 148126 GPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRYVARLSFALESDRCTNNI
148305
++WT+ D + G GA + SP R V RL F +NN+
Sbjct 938 DTQLPAASIQPELWTMFFDGSLMKTGVGAGLLFISPLGKHLRCVLRLHFP-----ASNNM
992
Query 148306 AEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDPALMQYLTAVRSLEIQFK
148485
AEYE ++ GLR LGV + DS+++ QV K +DP + Y VR LE +F
Sbjct 993 AEYEALVNGLRIAIELGVRRLDARGDSQLVIDQVIKNSHCRDPKMEAYCDEVRRLEDKFY
1052
Query 148486 GLTLQHM 148506
GL + H+
Sbjct 1053 GLEVNHI 1059
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix
adjust.
Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 0/96 (0%)
Frame = -1
Query 61923 DTAVMATYFHVALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVR
61744
D ++ V LS AR WL +L PG I +W++L F NF Y + G L + R
Sbjct 93 DDNLIIRNLPVFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNFWDLRSCR
152
Query 61743 QEPRETLRAFISYFTKVRGTIPRISDASIITAFHQG 61636
Q+P E+LR +I F+K R +P ++D+ +I AF G
Sbjct 153 QQPGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG 188
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix
adjust.
Identities = 49/53 (92%), Positives = 49/53 (92%), Gaps = 0/53 (0%)
Frame = +3
Query 126582 GVITVGPTYRHAYECDVECVeyaealaesealiadleslsKEAPDVKRHAGKL

126740
GVITVGPTYRHAYECDVECVEY EALAESEALIADLESLSKEAPD KRHAG
Sbjct 451 GVITVGPTYRHAYECDVECVEYVEALAESEALIADLESLSKEAPDAKRHAGNF 503
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix
adjust.
Identities = 30/96 (31%), Positives = 46/96 (48%), Gaps = 0/96 (0%)
Frame = +2
Query 145004 DDATMAKSFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK
145183
DD + ++ + L W LPP I +W L F NFQG +L C+
Sbjct 93 DDNLIIRNLPVFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNFWDLRSCR
152
Query 145184 *QEKETLREYYRKFLTLKSQLPSVDDQIAIHYAISG 145291
Q E+LR+Y R+F +++LP+V D I ++G
Sbjct 153 QQPGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG 188
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix
adjust.
Identities = 28/94 (30%), Positives = 46/94 (49%), Gaps = 0/94 (0%)
Frame = +2
Query 35594 SVMAKSFVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQD
35773
+++ ++ + + A+ W L PG I++W L +FQG +P L C Q
Sbjct 95 NLIIRNLPVFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNFWDLRSCRQQ
154
Query 35774 HEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKG 35875
E L+ Y+RRF + R + P V + VI A + G
Sbjct 155 PGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG 188
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix
adjust.
Identities = 23/72 (32%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query 100899 DGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSWNELENKFHEHFFAGEYELG-LADLGSV
101075
D + + + L+ TA AW LPP +++W++L F +F G DL S
Sbjct 92 DDDNLIIRNLPVFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNFWDLRSC

151
Query 101076 *QGREESVNDYI 101111
Q ES+ DYI
Sbjct 152 RQQPGESLRDYI 163
Score = 27.3 bits (59), Expect(2) = 7.7, Method: Compositional matrix
adjust.
Identities = 14/58 (24%), Positives = 26/58 (45%), Gaps = 7/58 (12%)
Frame = +2
Query 23759 PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKLVTIQKF-------YWQNIIDRL
23911
P W LD++GP+ A G + ++ + KW ++ + ++ NII R
Sbjct 1178 PFAVWGLDLVGPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSKQAVAFFTNIIHRF
1235
Score = 26.2 bits (56), Expect(2) = 7.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 13/31 (42%), Gaps = 0/31 (0%)
Frame = +1
Query 23632 AFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
FYW V D +V C C Y R + P
Sbjct 1136 GFYWPTAVADATRIVCTCQGCQFYARQTHLP 1166
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length=1063
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 440/662 (66%), Positives = 521/662 (79%), Gaps = 14/662 (2%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSS--
82446
S DV FDETNGSQ E +LD++G Q A++ M+IG++ PKE ++ S PSSS
Sbjct 400 SCDVVFDETNGSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPSSSMQ
459
Query 82445 ----TINEE----DHQSQQLNETI--DTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKD
82296
T NE+ D + Q +E D++DQG R+H +I +D
Sbjct 460 ASPPTQNEDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRD

519
Query 82295 HPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFAR
82116
HPVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF R
Sbjct 520 HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTR
579
Query 82115 NEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVA
81936
NEVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVA
Sbjct 580 NEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVA
638
Query 81935 RLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKA
81756
RLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV++LSKA
Sbjct 639 RLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKA
698
Query 81755 LYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDL
81576
LYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN
Sbjct 699 LYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKS
758
Query 81575 FCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIK
81396
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FI Q+KY +D+L KFG+++AKPIK
Sbjct 759 TCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIK
818
Query 81395 TPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLK
81216
TPM TNGHLDLD GG VDQK+YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL
Sbjct 819 TPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLT
878
Query 81215 AAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWS
81036
A KRILRYL YTP GLWYP+G+ F+LIGYSD+D+AGCK++RKSTSG CQFLGRSLVSW+
Sbjct 879 AVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWA
938
Query 81035 SKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPV
80856

Sbjct 939
998
SKKQNSVALSTAEAEYI+AG+CCAQLLWM+QTLLDY VPL+CDNESA+K+A NPV
SKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPV
Query 80855 QHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDI
80676
+HSRTKHI IR+HFLRDH KGDI I I T DQLADIFTKPLDE F LR E+N++D
Sbjct 999 EHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNILDS
1058
Query 80675 SN 80670
N
Sbjct 1059 RN 1060
Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 314/473 (66%), Positives = 366/473 (77%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 575 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
630
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 631 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
688
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVY+LSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD
Sbjct 689 PNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVD
748
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFI QTKYTQDIL
Sbjct 749 DIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTK
808
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311

Sbjct 809
868
F +KDAKPIKT MGTNGHLDLD GGKSVDQK+ RSMIGSLLYL SR I+LSVCMCARF
FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARF
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KE HL VK+ILRYL T F LWYP+GSTFDL+GY D D+ K++RKSTS TC
Sbjct 869 QSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQ
928
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+QN VALST +A+YI A H QLL MRQTL D+G L+KVPLLCDN+
Sbjct 929 FLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPLLCDNE
988
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAI++ DNP+EHSRTKHI I++HFLRDHQQ+ DIEI++++T QL DIF+ L
Sbjct 989 SAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPL 1041
Score = 40.0 bits (92), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 266 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 311
Score = 30.0 bits (66), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 22/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKD-KKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + K T ++ KK NISY + + +K K PK
Sbjct 312 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKFAPK
371
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 372 TVEGFLLGYDSNTRAYR 388

Score = 28.9 bits (63), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 12/42 (29%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K + K + A+N+ +IK
Sbjct 205 LVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIK 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix
adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 27/210 (13%)
Frame = +2
Query 129167 RTCQGCQFYARQ--THLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKF
129337
R C CQ +Q TH P + + T P + +DL P+ + GG + LV +D +
Sbjct 155 RICSACQ-AGKQVGTHHPHKNIMTT--DRPLELLHMDLFGPIAYISIGGSKYCLVIVDDY
211
Query 129338 SK--WIEVRPLNSIRSEQAVAFFTNIIHRFGV-PNSIITNNGTQFTGRKFLDFCEDHHIR
129508
S+ W+ S E F + FG+ I ++NGT+F + F E+ I+
Sbjct 212 SRFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIK
271
Query 129509 VDWAIVAHPMTNGQVERANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL------
129664
+++ P NG VER N +L + + Y ++F W + + +++
Sbjct 272 HEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLH
328
Query 129665 ----RTTPSRATGFTP---FFLVYGAEAIL 129733
+T+ TG P +F V+G++ +
Sbjct 329 RILKKTSYELLTGKKPNISYFRVFGSKCFI 358
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 25/74 (34%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--

149442
Sbjct 251
309
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
DNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
Query 149443 -WADQLPEVVWALN 149481
WA+ + +A+N
Sbjct 310 FWAEAVNTACYAIN 323
>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
Length=1063
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 440/662 (66%), Positives = 522/662 (79%), Gaps = 14/662 (2%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSS--
82446
S DV FDETNGSQ E +LD++G Q A++ M+IG++ PKE ++ S PSSS
Sbjct 400 SCDVVFDETNGSQVEQVDLDEIGEEQAPCIALRNMSIGDMCPKEFEEPPSTQDQPSSSMQ
459
Query 82445 ----TINEE----DHQSQQLNETI--DTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKD
82296
T NE+ D + Q +E D++DQG R+H +I +D
Sbjct 460 ASPPTQNEDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRD
519
Query 82295 HPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFAR
82116
HPVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF R
Sbjct 520 HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTR
579
Query 82115 NEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVA
81936
NEVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVA
Sbjct 580 NEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVA
638
Query 81935 RLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKA
81756
RLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV++LSKA
Sbjct 639 RLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKA

698
Query 81755 LYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDL
81576
LYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 699 LYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNES
758
Query 81575 FCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIK
81396
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FISQ+KY +D+L KFG+++AKPIK
Sbjct 759 TCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILAKFGMKDAKPIK
818
Query 81395 TPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLK
81216
TPM TNGHLDLD GG VDQK+YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL
Sbjct 819 TPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLT
878
Query 81215 AAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWS
81036
A KRILRYL YTP GLWYP+G+ F+LIGYSD+D+AGCK++RKSTSG CQFLGRSLVSW+
Sbjct 879 AVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWA
938
Query 81035 SKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPV
80856
SKKQNSVALSTAEAEYI+AG+CCAQLLWM+QTL DY VPL+CDNESA+K+A NPV
Sbjct 939 SKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPV
998
Query 80855 QHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDI
80676
+HSRTKHI IR+HFLRDH KGDI I I T DQLADIFTKPLDE F LR E+N++D
Sbjct 999 EHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNILDS
1058
Query 80675 SN 80670
N
Sbjct 1059 RN 1060
Score = 624 bits (1610), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 314/469 (67%), Positives = 366/469 (78%), Gaps = 5/469 (1%)

Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRCRNQVCV--PQQKRRVWSGDKEQRSACGKRLCPSHRFGL**
141603
+NF RNEVW LVP P Q + Q + V + +K + A G FG
Sbjct 575 NNFTRNEVWHLVPRPNQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGE--
632
Query 141604 DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHV
141783
++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ YPNHV
Sbjct 633 TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHV
692
Query 141784 YKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIF
141963
Y+LSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VDDIIF
Sbjct 693 YRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIF
752
Query 141964 GSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIK
142143
GSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFISQTKYTQDIL F +K
Sbjct 753 GSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILAKFGMK
812
Query 142144 DAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSDA
142323
DAKPIKT MGTNGHLDLD GGKSVDQK+ RSMIGSLLYL SR I+LSVCMCARFQSD
Sbjct 813 DAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDP
872
Query 142324 KECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGR
142503
KE HL VK+ILRYL T F LWYP+GSTFDL+GY D D+ K++RKSTS TC FLGR
Sbjct 873 KESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGR
932
Query 142504 SLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNKSAIR
142683
SLVSW+SK+QN VALST +A+YI A H QLL MRQTLRD+G L+KVPLLCDN+SAI+
Sbjct 933 SLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIK
992
Query 142684 LVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL 142827
+ DNP+EHSRTKHI I++HFLRDHQQ+ DIEI++++T QL DIF+ L

Sbjct 993 MADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPL 1041
Score = 40.0 bits (92), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 266 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 311
Score = 30.0 bits (66), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 22/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKD-KKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + K T ++ KK NISY + + +K K PK
Sbjct 312 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKFAPK
371
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 372 TVEGFLLGYDSNTRAYR 388
Score = 28.9 bits (63), Expect(3) = 2e-07, Method: Compositional matrix
adjust.
Identities = 12/42 (29%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K + K + A+N+ +IK
Sbjct 205 LVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIK 246
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix
adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 27/210 (13%)
Frame = +2
Query 129167 RTCQGCQFYARQ--THLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKF
129337

Sbjct 155
211
R C CQ +Q TH P + + T P + +DL P+ + GG + LV +D +
RICSACQ-AGKQVGTHHPHKNIMTT--DRPLELLHMDLFGPIAYISIGGSKYCLVIVDDY
Query 129338 SK--WIEVRPLNSIRSEQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIR
129508
S+ W+ S E F + FG+ I ++NGT+F + F E+ I+
Sbjct 212 SRFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIK
271
Query 129509 VDWAIVAHPMTNGQVERANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL------
129664
+++ P NG VER N +L + + Y ++F W + + +++
Sbjct 272 HEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLH
328
Query 129665 ----RTTPSRATGFTP---FFLVYGAEAIL 129733
+T+ TG P +F V+G++ +
Sbjct 329 RILKKTSYELLTGKKPNISYFRVFGSKCFI 358
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 25/74 (34%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 251 DNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
309
Query 149443 -WADQLPEVVWALN 149481
WA+ + +A+N
Sbjct 310 FWAEAVNTACYAIN 323
>gb|ACA21859.1| Opie2a pol protein [Zea mays]
Length=691
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 425/661 (64%), Positives = 515/661 (78%), Gaps = 26/661 (4%)
Frame = -2
Query 82616 SFDVEFDETNGS-QDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSST

82443
Sbjct 45
100
S DV FDETNGS +++ NLDDV + AM TMAIG ++P+E +++ PSS+T
SSDVVFDETNGSLREQVVNLDDVDEEDVPTAAMCTMAIGNVRPQEHLEQDQ----PSSTT
Query 82442 INEEDHQSQQLNETIDTHDQGTSR---------PQIPPNASTSNYQTVSRIHHSIVKDHP
82290
+ Q + ++ HDQG ++ PQ PP +++ +I ++HP
Sbjct 101 MVHPPTQDDEQAPQVEAHDQGGAQDVQVEEEEAPQAPP----------TQVRATIQRNHP
150
Query 82289 VDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNE
82110
V+QI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+E LLD DWV AM +ELNNF RNE
Sbjct 151 VNQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNE
210
Query 82109 VWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARL
81930
VW LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARL
Sbjct 211 VWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARL
269
Query 81929 EAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALY
81750
++IRI LAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALY
Sbjct 270 KSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALY
329
Query 81749 GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFC
81570
GLKQAPRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN C
Sbjct 330 GLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSC
389
Query 81569 EEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTP
81390
EEF ++M+++FEMSM+GELS+FLG Q++QLKDG FISQ+KY +D++K+FG+++AKP KTP
Sbjct 390 EEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTP
449
Query 81389 MATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAA
81210
M T+GH DL++GG VDQK YRS IGSLLY+ ASRPD+M SVCMCARFQ+ PRE HL A
Sbjct 450 MGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAV
509

Query 81209 KRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSK
81030
KRILRYL TP G+WYPKG+ F+LIGYSDSDYA CKVDRKSTS CQFLGRSLVSW+SK
Sbjct 510 KRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRTCQFLGRSLVSWNSK
569
Query 81029 KQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQH
80850
KQ SVALSTAEAEY++ G CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+H
Sbjct 570 KQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVEH
629
Query 80849 SRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISN
80670
SRTKHIDIRHHFLRDH KGDI ++ + +++ LADIFTKPLDE FC L SE+NV+D N
Sbjct 630 SRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPLDEQTFCKLHSELNVLDSRN
689
Query 80669 V 80667
+
Sbjct 690 L 690
Score = 629 bits (1621), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 318/473 (67%), Positives = 371/473 (78%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 204 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
259
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARL+S I LAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++R+
Sbjct 260 EE--TFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERF
317
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 318 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD
377

Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQ SCEEFSR+M QK+EMSMMGEL+YFL FQV+QLKD TFISQTKYTQD++K
Sbjct 378 DIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKR
437
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RS IGSLLYL SR I+LSVCMCARF
Sbjct 438 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARF
497
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD +ECHL VK+ILRYLV T F +WYPKGSTFDL+GY D DY K+DRKSTS TC
Sbjct 498 QSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRTCQ
557
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ QLL MRQTLRDFG NLS+VPLLCDN+
Sbjct 558 FLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNE
617
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVS+ + L DIF+ L
Sbjct 618 SAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPL 670
>gb|AAL35398.1| Opie2 pol [Zea mays]
Length=691
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 425/661 (64%), Positives = 514/661 (78%), Gaps = 26/661 (4%)
Frame = -2
Query 82616 SFDVEFDETNGS-QDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS +++ NLDDV + AM TMAIG ++P+E +++ PSS+T
Sbjct 45 SSDVVFDETNGSLREQVVNLDDVDEEDVPTAAMCTMAIGNVRPQEHLEQDQ----PSSTT
100
Query 82442 INEEDHQSQQLNETIDTHDQGTSR---------PQIPPNASTSNYQTVSRIHHSIVKDHP

82290
Sbjct 101
150
+ Q + ++ HDQG ++ PQ PP +++ +I ++HP
MVHPPTQDDEQAPQVEAHDQGGAQDVQVEEEEAPQAPP----------TQVRATIQRNHP
Query 82289 VDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNE
82110
V+QI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+E LLD DWV AM +ELNNF RNE
Sbjct 151 VNQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNE
210
Query 82109 VWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARL
81930
VW LV RPK NV+GTKWVFRNK + GVV RNKARLVA+GY Q+ GLDF ETFAPVARL
Sbjct 211 VWTLVPRPK-QNVVGTKWVFRNKQYEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARL
269
Query 81929 EAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALY
81750
++IRI LAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALY
Sbjct 270 KSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALY
329
Query 81749 GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFC
81570
GLKQAPRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN C
Sbjct 330 GLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSC
389
Query 81569 EEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTP
81390
EEF ++M+++FEMSM+GELS+FLG Q++QLKDG FISQ+KY +D++K+FG+++AKP KTP
Sbjct 390 EEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTP
449
Query 81389 MATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAA
81210
M T+GH DL++GG VDQK YRS IGSLLY+ ASRPD+M SVCMCARFQ+ PRE HL A
Sbjct 450 MGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAV
509
Query 81209 KRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSK
81030
KRILRYL TP G+WYPKG+ F+LIGYSDSDYA CKVDRKSTS CQFLGRSLVSW+SK
Sbjct 510 KRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRTCQFLGRSLVSWNSK
569

Query 81029 KQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQH
80850
KQ SVALSTAEAEY++ G CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+H
Sbjct 570 KQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVEH
629
Query 80849 SRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISN
80670
SRTKHIDIRHHFLRDH KGDI ++ + +++ LADIFTKPLDE FC L SE+NV+D N
Sbjct 630 SRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPLDEQTFCKLHSELNVLDSRN
689
Query 80669 V 80667
+
Sbjct 690 L 690
Score = 627 bits (1618), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 318/473 (67%), Positives = 371/473 (78%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 204 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QYEHGVVTRNKARLVAKGYAQVAGLDF
259
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARL+S I LAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++R+
Sbjct 260 EE--TFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERF
317
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 318 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD
377
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQ SCEEFSR+M QK+EMSMMGEL+YFL FQV+QLKD TFISQTKYTQD++K
Sbjct 378 DIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKR
437

Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RS IGSLLYL SR I+LSVCMCARF
Sbjct 438 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARF
497
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD +ECHL VK+ILRYLV T F +WYPKGSTFDL+GY D DY K+DRKSTS TC
Sbjct 498 QSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRTCQ
557
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ QLL MRQTLRDFG NLS+VPLLCDN+
Sbjct 558 FLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNE
617
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVS+ + L DIF+ L
Sbjct 618 SAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSSENHLADIFTKPL 670
>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
Length=1048
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 435/657 (66%), Positives = 519/657 (79%), Gaps = 18/657 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + A++TMAIGE++P+E D+ + PSSST
Sbjct 402 SSDVVFDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQ----PSSST
457
Query 82442 I----NEEDHQSQQLNETIDTHDQGTSRP-QIPPNASTSNYQTVSRIHHSIVKDHPVDQI
82278
+ E+D Q Q ++ DQG ++ Q+ + T ++ I +DHPVDQI
Sbjct 458 MVHPPTEDDEQVPQ----VEALDQGGAQDDQVMEEEAQPAPPT--QVRAMIQRDHPVDQI
511
Query 82277 VGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVWEL

82098
Sbjct 512
571
+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW L
LGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTL
Query 82097 VERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAIR
81918
V RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+IR
Sbjct 572 VPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIR
630
Query 81917 ILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQ
81738
ILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALYGLKQ
Sbjct 631 ILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQ
690
Query 81737 APRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFG
81558
APRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN CEEF
Sbjct 691 APRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFS
750
Query 81557 KMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATN
81378
++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM T+
Sbjct 751 RVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTD
810
Query 81377 GHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRIL
81198
GH DL++GG +DQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KRIL
Sbjct 811 GHTDLNKGGKSIDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRIL
870
Query 81197 RYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNS
81018
RYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ S
Sbjct 871 RYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTS
930
Query 81017 VALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSRTK
80838
VALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+HSRTK
Sbjct 931 VALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTK
990

Query 80837 HIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
HIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NVID N+
Sbjct 991 HIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVIDSRNL
1047
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 332/473 (70%), Positives = 376/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 617 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 675 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD
734
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 735 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
794
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKS+DQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 795 FGMKDAKPAKTPMGTDGHTDLNKGGKSIDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
854
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC

Sbjct 855
914
QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
974
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 975 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1027
Score = 39.7 bits (91), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 268 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPEYFW 313
Score = 30.0 bits (66), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 207 LVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELKVK 248
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 62/141 (44%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + + P + +DL P+ + GG + LV +D FS+
Sbjct 157 RPCAACQ-AGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
215

Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 216 FTWVFFLQDKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 276 FSAPYTPQQNGVVERKNRTLI 296
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
300
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 301 TMLGEFKT-------PEYFWSEAVNTA-CHA 323
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length=1760
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 437/661 (66%), Positives = 519/661 (79%), Gaps = 13/661 (2%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSSTI
82440
S DV FDETNGSQ E +LD+ G + A++ M+IG++ PKE ++ S PSSST
Sbjct 1098 SCDVVFDETNGSQVEQVDLDETGNDEAPCVALRNMSIGDVCPKESEELPSAQDQPSSSTQ
1157
Query 82439 NEEDHQSQQLNETIDTHDQGTSRPQIP--PNASTSNYQTVS---------RIHHSIVKDH
82293
Q++ + + DQ PQ +N Q R+H +I +DH
Sbjct 1158 ASPPTQNEDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAIQQDH
1217

Query 82292 PVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARN
82113
PVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF RN
Sbjct 1218 PVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRN
1277
Query 82112 EVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVAR
81933
EVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVAR
Sbjct 1278 EVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVAR
1336
Query 81932 LEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKAL
81753
LE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV+KLSKAL
Sbjct 1337 LESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKAL
1396
Query 81752 YGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLF
81573
YGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 1397 YGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNEST
1456
Query 81572 CEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKT
81393
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FISQ+KY +D+L KFG+++AKPIKT
Sbjct 1457 CEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKT
1516
Query 81392 PMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKA
81213
PM TNGHLDLD GG VDQK+YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A
Sbjct 1517 PMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTA
1576
Query 81212 AKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSS
81033
KRILRYL YTP GLWYP+G+ F+L+GYSD+D+AGCK++RKSTSG CQFLGRSLVSW+S
Sbjct 1577 VKRILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWAS
1636
Query 81032 KKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQ
80853
KKQNSVALSTAEAEYI+AG+CCAQLLWM+QTL DY VPL+CDNESA+K+A NPV+

Sbjct 1637
1696
KKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVE
Query 80852 HSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDIS
80673
HSRTKHI IR+HFLRDH KGDI I I T DQLADIFTKPLDE F LR E+N++D
Sbjct 1697 HSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHELNILDSR
1756
Query 80672 N 80670
N
Sbjct 1757 N 1757
Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 317/473 (67%), Positives = 368/473 (78%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 1272 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
1327
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 1328 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
1385
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVYKLSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD
Sbjct 1386 PNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVD
1445
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFISQTKYTQDIL
Sbjct 1446 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSK
1505
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKPIKT MGTNGHLDLD GGKSVDQK+ RSMIGSLLYL SR I+LSVCMCARF

Sbjct 1506
1565
FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARF
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KE HL VK+ILRYL T F LWYP+GSTFDL+GY D D+ K++RKSTS TC
Sbjct 1566 QSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQ
1625
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+QN VALST +A+YI A H QLL MRQTLRD+G L+KVPLLCDN+
Sbjct 1626 FLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNE
1685
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAI++ DNP+EHSRTKHI I++HFLRDHQQ+ DIEI++++T QL DIF+ L
Sbjct 1686 SAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPL 1738
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix
adjust.
Identities = 42/133 (32%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Frame = -1
Query 73830 NDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHEGTTIVKSAKLYVCKGKFEQFIM
73651
N QA + +L E+N+++ L +A EIW L HEG + K K +G+ +F +
Sbjct 124 NSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHEGDELTKITKRETIEGELGRFRL
183
Query 73650 KEDESVSDMFNRLNEIVNELKGLG-FNVPDVDFTHKFLRSLPEKYETIVTMLVRSDLSTT
73474
++ E M+NRL +VN+++ LG D + LRSL T V L+R + T
Sbjct 184 RKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEMVKVILRSLIFLNPTQV-QLIRGNPRYT
242
Query 73473 --SPTEVLGEILT 73441
+P EV+G ++
Sbjct 243 KMTPEEVIGNFVS 255
Score = 37.7 bits (86), Expect(2) = 3e-04, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)

Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 964 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 1009
Score = 31.2 bits (69), Expect(2) = 3e-04, Method: Composition-based
stats.
Identities = 23/77 (30%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + + K T ++ KK NISY + V +K K PK
Sbjct 1010 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKFAPK
1069
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 1070 TVEGFLLGYDPNTRAYR 1086
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 30/94 (32%), Positives = 45/94 (48%), Gaps = 5/94 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 949 DNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
1007
Query 149443 -WADQLPEVVWALNTTEC-RATGFTPFCLLHGSE 149538
WA+ + +A+N R T + LL G +
Sbjct 1008 FWAEAVNTACYAINRLYLHRILKKTSYELLTGKK 1041
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix
adjust.
Identities = 39/164 (24%), Positives = 68/164 (41%), Gaps = 36/164 (22%)
Frame = +2
Query 129380 EQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVE
129556

Sbjct 926
985
E F + FG+ I ++NGT+F + F E+ I+ +++ P NG VE
ETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVE
Query 129557 RANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL----------RTTPSRATGFTP
129700
R N +L + + Y ++F W + + +++ +T+ TG P
Sbjct 986 RKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLHRILKKTSYELLTGKKP
1042
Query 129701 ---FFLVYGAEAIL-----------PTDLEYGF-----PRTRAY 129775
+F V+G++ + P +E GF P TRAY
Sbjct 1043 NISYFRVFGSKCFILVKRGRKSKFAPKTVE-GFLLGYDPNTRAY 1085
>gb|AAC49502.1| Pol [Zea mays]
Length=1068
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 433/659 (66%), Positives = 514/659 (78%), Gaps = 22/659 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQLI--NAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + I A++TMAIGE++P+E D+ PS ST
Sbjct 422 SGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQ----PSPST
477
Query 82442 I-------NEEDHQSQQLNETIDTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDHPVD
82284
+ +E+ HQ Q++ + D + P T ++ I +DHPVD
Sbjct 478 MVHPPTQDDEQVHQ-QEVCDQGGAQDDHVLEEEAQPAPPT-------QVRAMIQRDHPVD
529
Query 82283 QIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVW
82104
QI+GDISKGV TRSR+ +FCEH SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW
Sbjct 530 QILGDISKGVTTRSRLVNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVW
589
Query 82103 ELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEA
81924
LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+
Sbjct 590 TLVPRPK-QNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLES
648

Query 81923 IRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGL
81744
IRILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALYGL
Sbjct 649 IRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGL
708
Query 81743 KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEE
81564
KQAPRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN CEE
Sbjct 709 KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE
768
Query 81563 FGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMA
81384
F ++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM
Sbjct 769 FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG
828
Query 81383 TNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKR
81204
T+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KR
Sbjct 829 TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR
888
Query 81203 ILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQ
81024
ILRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ
Sbjct 889 ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ
948
Query 81023 NSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSR
80844
SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+HSR
Sbjct 949 TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSR
1008
Query 80843 TKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
TKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D N+
Sbjct 1009 TKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRNL
1067
Score =
adjust.
654 bits (1687), Expect = 0.0, Method: Compositional matrix

Identities = 334/473 (71%), Positives = 377/473 (80%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q +R V + +K + A G F
Sbjct 581 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDERGVVTRNKARLVAKGYAQVAGLDF
636
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 637 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
694
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 695 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD
754
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 755 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
814
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 815 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
874
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 875 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
934
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 935 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
994
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL

142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 995 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1047
Score = 40.4 bits (93), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 288 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFW 333
Score = 30.0 bits (66), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 227 LVIVDDFSRFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVK 268
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 61/141 (43%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + P + +DL P+ + GG + LV +D FS+
Sbjct 177 RPCAACQ-AGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
235
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 236 FTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
295
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 296 FSAPYTPQQNGVVERKNRTLI 316

Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 265 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
320
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 321 TMLGEFKT-------PECFWTEAVNTA-CHA 343
>gb|ABF67947.1| Opie2 pol protein [Zea mays]
Length=1048
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 430/658 (65%), Positives = 513/658 (78%), Gaps = 20/658 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + AM+TMAIG+++P+E +++ PSSST
Sbjct 402 SSDVVFDETNGSPREQVVDLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQ----PSSST
457
Query 82442 INEEDHQSQQLNETIDTHDQGTSR------PQIPPNASTSNYQTVSRIHHSIVKDHPVDQ
82281
+ Q + ++ DQG ++ + P T ++ I +DHPVDQ
Sbjct 458 MVHPPTQDDEQVPQMEACDQGGAQDDRVMEEEAQPAPPT-------QVRAMIQRDHPVDQ
510
Query 82280 IVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVWE
82101
I+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW
Sbjct 511 ILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWT
570
Query 82100 LVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAI
81921
LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+I

Sbjct 571
629
LVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI
Query 81920 RILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLK
81741
RILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALYGLK
Sbjct 630 RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLK
689
Query 81740 QAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEF
81561
QAPRAWYE LRDFL+ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN CEEF
Sbjct 690 QAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEF
749
Query 81560 GKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMAT
81381
++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM T
Sbjct 750 SRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGT
809
Query 81380 NGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRI
81201
+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KRI
Sbjct 810 DGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI
869
Query 81200 LRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQN
81021
LRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ
Sbjct 870 LRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQT
929
Query 81020 SVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSRT
80841
SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+HSRT
Sbjct 930 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRT
989
Query 80840 KHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
KHIDIR HFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D N+
Sbjct 990 KHIDIRDHFLRDHQQKGDIKVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRNL
1047

Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 331/473 (70%), Positives = 374/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 617 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 675 PDHVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVD
734
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 735 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
794
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 795 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
854
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 855 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
914
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
974

Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+ HFLRDHQQ+ DI++ HVST +QL DIF+ L
Sbjct 975 SAIRMAENPVEHSRTKHIDIRDHFLRDHQQKGDIKVFHVSTENQLADIFTKPL 1027
Score = 38.1 bits (87), Expect(2) = 5e-04, Method: Compositional matrix
adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ +L + +W
Sbjct 268 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTILGKFKTPEYFW 313
Score = 30.0 bits (66), Expect(2) = 5e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 207 LVIVDDFSRFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVK 248
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 61/141 (43%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + P + +DL P+ + GG + LV +D FS+
Sbjct 157 RPCAACQ-AGKQVGGAHHGKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
215
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 216 FTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++

Sbjct 276 FSAPYTPQQNGVVERKNRTLI 296
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix
adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
300
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L GK+ + PE W A+NT C A
Sbjct 301 TIL-----GKF--KTPEYFWTEAVNTA-CHA 323
>gb|ABF67946.1| putative Opie4 pol protein [Zea mays]
Length=1068
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 430/661 (65%), Positives = 513/661 (78%), Gaps = 26/661 (4%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + AM+TMAIG+++P+E +++ PSSST
Sbjct 422 SSDVVFDETNGSPREQVVDLDDVDEEDVPTAAMRTMAIGDVRPQEQLEQDQ----PSSST
477
Query 82442 I-------NEEDHQSQQLNE--TIDTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDHP
82290
+ +E+ HQ + ++ D H PP +++ I +DHP
Sbjct 478 MVQPPTQDDEQVHQQEACDQGGAQDDHVMEEDAQPAPP----------TQVRAMIQRDHP
527
Query 82289 VDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNE
82110
VDQI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNE
Sbjct 528 VDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNE
587
Query 82109 VWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARL

81930
Sbjct 588
646
VW LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARL
VWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARL
Query 81929 EAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALY
81750
E+I ILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALY
Sbjct 647 ESIHILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALY
706
Query 81749 GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFC
81570
GLKQAPRAWYE LRD L+ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN C
Sbjct 707 GLKQAPRAWYECLRDILIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSC
766
Query 81569 EEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTP
81390
EEF ++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTP
Sbjct 767 EEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTP
826
Query 81389 MATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAA
81210
M T+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A
Sbjct 827 MGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAV
886
Query 81209 KRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSK
81030
KRILRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SK
Sbjct 887 KRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSK
946
Query 81029 KQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQH
80850
KQ SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+H
Sbjct 947 KQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEH
1006
Query 80849 SRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISN
80670
SRTKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D N
Sbjct 1007 SRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRN
1066

Query 80669 V 80667
+
Sbjct 1067 L 1067
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 333/473 (70%), Positives = 375/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 581 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
636
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES HILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 637 EE--TFAPVARLESIHILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
694
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+D LI N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 695 PDHVCKLSKALYGLKQAPRAWYECLRDILIVNAFKVGKADPTLFTKTCDGDLFVCQIYVD
754
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 755 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
814
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 815 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
874
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 875 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
934

Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 935 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
994
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 995 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1047
Score = 39.7 bits (91), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 288 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPERFW 333
Score = 30.0 bits (66), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 227 LVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELKVK 268
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 62/141 (44%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + + P + +DL P+ + GG + LV +D FS+
Sbjct 177 RPCAACQ-AGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
235
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514

Sbjct 236
295
+ V L Q F + F + I ++NG++F + +F E+ I+ +
FTWVFFLQDKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 296 FSAPYTPQQNGVVERKNRTLI 316
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 265 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
320
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 321 TMLGEFKT-------PERFWSEAVNTA-CHA 343
>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
Length=1048
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 430/662 (65%), Positives = 516/662 (78%), Gaps = 28/662 (4%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + AM+TMAIG+++P+E +++ PSSST
Sbjct 402 SSDVVFDETNGSPREQVVDLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQ----PSSST
457
Query 82442 I-------NEEDHQSQ---QLNETIDTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDH
82293
+ +E+ HQ + Q +D + ++P P +++ I +DH
Sbjct 458 MVHPPTQDDEQVHQQEACDQGGAQVDHVMEEEAQPAPP-----------TQVRAMIQRDH
506
Query 82292 PVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARN

82113
Sbjct 507
566
PVDQI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RN
PVDQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRN
Query 82112 EVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVAR
81933
EVW LV RPK NV+GTKWVFRNK ++ G+V RNKARLVA+GY Q+ GLDF ETFAPVAR
Sbjct 567 EVWTLVPRPK-QNVVGTKWVFRNKQDEHGMVTRNKARLVAKGYAQVAGLDFEETFAPVAR
625
Query 81932 LEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKAL
81753
LE+IRILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKAL
Sbjct 626 LESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKAL
685
Query 81752 YGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLF
81573
YGLKQAPRAWYE LRDFL+ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN
Sbjct 686 YGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKS
745
Query 81572 CEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKT
81393
CEEF ++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KT
Sbjct 746 CEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKT
805
Query 81392 PMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKA
81213
PM T+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A
Sbjct 806 PMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVA
865
Query 81212 AKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSS
81033
KRILRYL TP GLWYPKG+ F+L+GYSDSDYA CKVDRKSTSG CQFLGRSLVSW+S
Sbjct 866 VKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYARCKVDRKSTSGTCQFLGRSLVSWNS
925
Query 81032 KKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQ
80853
KKQ SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+
Sbjct 926 KKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVE
985

Query 80852 HSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDIS
80673
HSRTKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D
Sbjct 986 HSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSR
1045
Query 80672 NV 80667
N+
Sbjct 1046 NL 1047
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 332/473 (70%), Positives = 375/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + + + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGMVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 617 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 675 PDHVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVD
734
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 735 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
794
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 795 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
854

Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 855 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYARCKVDRKSTSGTCQ
914
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
974
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 975 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1027
Score = 40.4 bits (93), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 268 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFW 313
Score = 30.0 bits (66), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 207 LVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELKVK 248
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 62/141 (44%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343

Sbjct 157
215
R C CQ +Q + + + P + +DL P+ + GG + LV +D FS+
RPCAACQ-AGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 216 FTWVFFLQDKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 276 FSAPYTPQQNGVVERKNRTLI 296
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
300
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 301 TMLGEFKT-------PECFWTEAVNTA-CHA 323
>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
Length=1048
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 429/658 (65%), Positives = 512/658 (78%), Gaps = 20/658 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + AM+TMAIG+++P+ +++ PSSST
Sbjct 402 SSDVVFDETNGSPREQVVDLDDVDEEDVPTAAMRTMAIGDVRPQAHLEQDQ----PSSST
457
Query 82442 INEEDHQSQQLNETIDTHDQGTSR------PQIPPNASTSNYQTVSRIHHSIVKDHPVDQ

82281
Sbjct 458
510
+ Q + ++ DQG ++ + P T ++ I +DHPVDQ
MVHPPTQDDEQVPQMEACDQGGAQDDRVMEEEAQPAPPT-------QVRAMIQRDHPVDQ
Query 82280 IVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVWE
82101
I+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW
Sbjct 511 ILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWT
570
Query 82100 LVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAI
81921
LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+I
Sbjct 571 LVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI
629
Query 81920 RILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLK
81741
RILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALYGLK
Sbjct 630 RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLK
689
Query 81740 QAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEF
81561
QAPRAWYE LRDFL+ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN CEEF
Sbjct 690 QAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEF
749
Query 81560 GKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMAT
81381
++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM T
Sbjct 750 SRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGT
809
Query 81380 NGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRI
81201
+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KRI
Sbjct 810 DGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI
869
Query 81200 LRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQN
81021
LRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ
Sbjct 870 LRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQT
929

Query 81020 SVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSRT
80841
SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+HSRT
Sbjct 930 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRT
989
Query 80840 KHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
KHIDIR HFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D N+
Sbjct 990 KHIDIRDHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRNL
1047
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 332/473 (70%), Positives = 374/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 617 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 675 PDHVCKLSKALYGLKQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVD
734
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 735 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
794
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF

Sbjct 795
854
FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 855 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
914
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
974
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+ HFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 975 SAIRMAENPVEHSRTKHIDIRDHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1027
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 60/141 (43%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + P + +DL P+ + GG + LV +D FS
Sbjct 157 RPCAACQ-AGKQVGGAHHGKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSC
215
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 216 FTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 276 FSAPYTPQQNGVVERKNRTLI 296
Score = 37.7 bits (86), Expect(2) = 0.008, Method: Compositional matrix
adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 0/46 (0%)

Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ +L + +W
Sbjct 268 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTILGEFKTPEYFW 313
Score = 26.6 bits (57), Expect(2) = 0.008, Method: Compositional matrix
adjust.
Identities = 12/42 (29%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD + F +V+ L+ K E K + A+N+ + K+K
Sbjct 207 LVIVDDFSCFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVK 248
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKN-RTLIDMA
299
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
+ +L + K PE W A+NT C A
Sbjct 300 RTILGEFK------TPEYFWTEAVNTA-CHA 323
>gb|AAL35396.1| Opie2a pol [Zea mays]
gb|ACA21858.1| Opie2a pol protein [Zea mays]
Length=1048
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 424/661 (64%), Positives = 515/661 (78%), Gaps = 26/661 (4%)
Frame = -2
Query 82616 SFDVEFDETNGS-QDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS +++ NLDDV + AM+TMAIG+++P+E +++ PSS+T
Sbjct 402 SSDVVFDETNGSLREQVVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQ----PSSTT

457
Query 82442 INEEDHQSQQLNETIDTHDQGTSR---------PQIPPNASTSNYQTVSRIHHSIVKDHP
82290
+ Q + + HDQG ++ PQ PP +++ +I ++HP
Sbjct 458 MVHPPTQDDEQAPQVGAHDQGGAQDVQVEEEEAPQAPP----------TQVRATIQRNHP
507
Query 82289 VDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNE
82110
V+QI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+E LLD DWV AM +ELNNF RNE
Sbjct 508 VNQILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNE
567
Query 82109 VWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARL
81930
VW LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARL
Sbjct 568 VWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARL
626
Query 81929 EAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALY
81750
++IRI LAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALY
Sbjct 627 KSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALY
686
Query 81749 GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFC
81570
GLKQAPRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN C
Sbjct 687 GLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSC
746
Query 81569 EEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTP
81390
EEF ++M+++FEMSM+GELS+FLG Q++QLKDG FISQ+KY +D++K+FG+++AKP KTP
Sbjct 747 EEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTP
806
Query 81389 MATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAA
81210
M T+GH DL++GG VDQK YRS IGSLLY+ ASRPD+M SVCMCARFQ+ PRE HL A
Sbjct 807 MGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAV
866
Query 81209 KRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSK
81030

Sbjct 867
926
KRILRYL TP G+WYPKG+ F+LIGYSDSDYA CKVDRKSTS CQFLGRSLVSW+SK
KRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRMCQFLGRSLVSWNSK
Query 81029 KQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQH
80850
KQ SVALSTAEAEY++ G CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+H
Sbjct 927 KQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVEH
986
Query 80849 SRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISN
80670
SRTKHIDIRHHFLRDH KG I ++ + +++ LADIFTKPLDE FC L SE+NV+D N
Sbjct 987 SRTKHIDIRHHFLRDHQQKGVIEVFHVSSENHLADIFTKPLDEQTFCKLHSELNVLDSRN
1046
Query 80669 V 80667
+
Sbjct 1047 L 1047
Score = 623 bits (1606), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 316/473 (67%), Positives = 369/473 (78%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARL+S I LAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++R+
Sbjct 617 EE--TFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERF
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 675 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD
734
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131

Sbjct 735
794
DIIFGSTNQ SCEEFSR+M QK+EMSMMGEL+YFL FQV+QLKD TFISQTKYTQD++K
DIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKR
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RS IGSLLYL SR I+LSVCMCARF
Sbjct 795 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCASRPDIMLSVCMCARF
854
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD +ECHL VK+ILRYLV T F +WYPKGSTFDL+GY D DY K+DRKSTS C
Sbjct 855 QSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYARCKVDRKSTSRMCQ
914
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ QLL MRQTLRDFG NLS+VPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRDFGYNLSEVPLLCDNE
974
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVST-HHQLDIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ IE+ HVS+ +H DIF+ L
Sbjct 975 SAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGVIEVFHVSSENHLADIFTKPL 1027
Score = 38.9 bits (89), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 17/40 (43%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Frame = +3
Query 53301 HERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 274 HEFSAPYTPQQNGVVERKNRTLMDMARTMLGEFKTPERFW 313
Score = 31.6 bits (70), Expect(2) = 1e-04, Method: Compositional matrix
adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K Y A+N+ + K+K
Sbjct 207 LVIVDDFSRFTWVFFLQDKSETQGTLKRYLRRAQNEFELKVK 248

Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix
adjust.
Identities = 29/86 (34%), Positives = 41/86 (48%), Gaps = 13/86 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F + G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLVEEGIKHEFSAPYTPQQNGVVERKNRTLMDMAR
300
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNT 149484
L + K PE W A+NT
Sbjct 301 TMLGEFKT-------PERFWSEAVNT 319
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix
adjust.
Identities = 33/141 (23%), Positives = 60/141 (43%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + P + +DL P+ + GG + LV +D FS+
Sbjct 157 RPCVACQ-AGKQVRGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
215
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q + + F + I ++NG++F + +F + I+ +
Sbjct 216 FTWVFFLQDKSETQGTLKRYLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 276 FSAPYTPQQNGVVERKNRTLM 296
>gb|ABF67934.1| Opie3 pol polyprotein [Zea mays]
Length=1048
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 427/659 (65%), Positives = 514/659 (78%), Gaps = 22/659 (3%)

Frame = -2
Query 82616 SFDVEFDETNGSQDES--ENLDDVGGTQLINAMKTMAIGEIKPKE----DDDENSVVVIP
82455
S DV FDETNGS E + D A++TMAIG+++P+E D +S V P
Sbjct 402 SSDVVFDETNGSPREQVIDCDDVDEEDVPTTAIRTMAIGDVRPQEQYERDQSSSSTKVHP
461
Query 82454 SSSTINEEDHQSQ---QLNETIDTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDHPVD
82284
+ +E+ HQ + Q +D + ++P P +++ I +DHPVD
Sbjct 462 PTQD-DEQVHQQEACDQGGAQVDHVMEEEAQPAPP-----------TQVRAMIQRDHPVD
509
Query 82283 QIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVW
82104
QI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW
Sbjct 510 QILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVW
569
Query 82103 ELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEA
81924
LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+
Sbjct 570 TLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLES
628
Query 81923 IRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGL
81744
IRILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KL KALYGL
Sbjct 629 IRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLFKALYGL
688
Query 81743 KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEE
81564
KQAPRAWYE LRDFL++ FK+GK D TLFTK +LFVCQIYVDDIIFGSTN CEE
Sbjct 689 KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGNLFVCQIYVDDIIFGSTNQKSCEE
748
Query 81563 FGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMA
81384
F ++M+++F+MSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM
Sbjct 749 FSRVMTRKFKMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG
808
Query 81383 TNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKR
81204

Sbjct 809
868
T+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KR
TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR
Query 81203 ILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQ
81024
ILRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ
Sbjct 869 ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ
928
Query 81023 NSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSR
80844
SVALSTAEAEY+ AG CCAQLLWM+QTL D++ VPL+CDNESA+++A NPV+HSR
Sbjct 929 TSVALSTAEAEYVVAGQCCAQLLWMRQTLRDFDYNLSKVPLLCDNESAIRMAENPVEHSR
988
Query 80843 TKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
TKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NV+D N+
Sbjct 989 TKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRNL
1047
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 328/473 (69%), Positives = 375/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 561 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
616
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 617 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
674
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KL KALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDG+LFVCQI VD
Sbjct 675 PDHVCKLFKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGNLFVCQIYVD
734

Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M +K++MSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 735 DIIFGSTNQKSCEEFSRVMTRKFKMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
794
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 795 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
854
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 855 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
914
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y++A QLL MRQTLRDF NLSKVPLLCDN+
Sbjct 915 FLGRSLVSWNSKKQTSVALSTAEAEYVVAGQCCAQLLWMRQTLRDFDYNLSKVPLLCDNE
974
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAIR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 975 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1027
Score = 39.7 bits (91), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 268 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPEYFW 313
Score = 30.0 bits (66), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295

+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 207 LVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELKVK 248
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix
adjust.
Identities = 35/141 (25%), Positives = 62/141 (44%), Gaps = 5/141 (4%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343
R C CQ +Q + + + P + +DL P+ + GG + LV +D FS+
Sbjct 157 RPCAACQ-AGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSR
215
Query 129344 WIEVRPLNSIRSEQAVA--FFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L Q F + F + I ++NG++F + +F E+ I+ +
Sbjct 216 FTWVFFLQDKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHE
275
Query 129515 WAIVAHPMTNGQVERANGMIL 129577
++ P NG VER N ++
Sbjct 276 FSAPYTPQQNGVVERKNRTLI 296
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 245 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
300
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 301 TMLGEFKT-------PEYFWTEAVNTA-CHA 323
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length=1892
Score =
909 bits (2349), Expect = 0.0, Method: Compositional matrix

adjust.
Identities = 437/662 (66%), Positives = 521/662 (79%), Gaps = 14/662 (2%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSS--
82446
S DV FDETNGSQ E +LD++G Q A++ M+IG++ PKE ++ S P SS
Sbjct 1229 SCDVVFDETNGSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPPSSMQ
1288
Query 82445 ----TINEED-----HQSQQLNETID-THDQGTSRPQIPPNASTSNYQTVSRIHHSIVKD
82296
T NE++ Q+Q++ D ++DQG R+H +I +D
Sbjct 1289 ASPPTQNEDEAQNDEEQNQEVKPPQDKSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRD
1348
Query 82295 HPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFAR
82116
HPVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF R
Sbjct 1349 HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTR
1408
Query 82115 NEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVA
81936
NEVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDF ET+APVA
Sbjct 1409 NEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVA
1467
Query 81935 RLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKA
81756
RLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV++LSKA
Sbjct 1468 RLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKA
1527
Query 81755 LYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDL
81576
LYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 1528 LYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNES
1587
Query 81575 FCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIK
81396
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FISQ+KY +D+L KFG+++AKPIK
Sbjct 1588 TCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIK
1647

Query 81395 TPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLK
81216
TPM TNGHLDLD GG VDQK+YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL
Sbjct 1648 TPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLT
1707
Query 81215 AAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWS
81036
A KRILRYL YTP GLWYP+G+ F+LIGYSD+D+AGCK++RKSTSG CQFLGRSLVSW+
Sbjct 1708 AVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWA
1767
Query 81035 SKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPV
80856
SKKQNSVALSTAEAEYI+AG+CCAQLLWM+QTL DY VPL+CDNESA+K+A NPV
Sbjct 1768 SKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPV
1827
Query 80855 QHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDI
80676
+HSRTKHI IR+HFLRDH KGDI I I T DQLADIFTKPLDE F LR E+N++D
Sbjct 1828 EHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNILDS
1887
Query 80675 SN 80670
N
Sbjct 1888 RN 1889
Score = 623 bits (1606), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 315/473 (67%), Positives = 367/473 (78%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 1404 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
1459
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 1460 DE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
1517

Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVY+LSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD
Sbjct 1518 PNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVD
1577
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFISQTKYTQDIL
Sbjct 1578 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAK
1637
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKPIKT MGTNGHLDLD GGKSVDQK+ RSMIGSLLYL SR I+LSVCMCARF
Sbjct 1638 FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARF
1697
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KE HL VK+ILRYL T F LWYP+GSTFDL+GY D D+ K++RKSTS TC
Sbjct 1698 QSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQ
1757
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+QN VALST +A+YI A H QLL MRQTLRD+G L+KVPLLCDN+
Sbjct 1758 FLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNE
1817
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
SAI++ DNP+EHSRTKHI I++HFLRDHQQ+ DIEI++++T QL DIF+ L
Sbjct 1818 SAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPL 1870
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix
adjust.
Identities = 50/173 (29%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Frame = -1
Query 74070 PRTPLFVDLIIPEWDKMASNNNVHIGKPPHFMETIMIIGK*ECQCILEQWVEKIWPIVRD
73891
PR P L+ +V +GKPP F + + L ++IW +V
Sbjct 117 PRVPKHTPLL-----------SVPLGKPPTFNGEDYAMWSNLMRFHLTSLHKRIWDVVEY
165

Query 73890 GFVVLKEDEPSVSDNENILT---------NDQAMNVFYDALDINEFNRIKNLTTAHEIWV
73738
G V PS+ D E+ T N QA + +L E+N+++ L A EIW
Sbjct 166 GVQV-----PSIGD-EDYDTDEVAQIEHFNSQAATILLASLSKEEYNKVQGLKNAKEIWD
219
Query 73737 KLMEIHEGTTIVKSAKLYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLG 73579
L HEG + K K +G+ +F +++ E DM+NRL +VN+++ LG
Sbjct 220 LLKTAHEGDELTKITKRETIEGELGRFHLRQGEEPQDMYNRLKTLVNQVRNLG 272
Score = 38.5 bits (88), Expect(3) = 3e-07, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 1095 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 1140
Score = 31.2 bits (69), Expect(3) = 3e-07, Method: Composition-based
stats.
Identities = 22/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + + K T ++ KK NISY + + +K K PK
Sbjct 1141 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKFAPK
1200
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 1201 TVEGFLLGYDSNTRAYR 1217
Score = 28.5 bits (62), Expect(3) = 3e-07, Method: Compositional matrix
adjust.
Identities = 12/42 (29%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K + K + A+N+ +IK
Sbjct 1034 LVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIK 1075

Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix
adjust.
Identities = 50/209 (24%), Positives = 90/209 (43%), Gaps = 25/209 (12%)
Frame = +2
Query 129167 RTCQGCQFYAR-QTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFS
129340
R C CQ + TH P + + T P + +DL P+ + GG + LV +D +S
Sbjct 984 RICSACQAGKQVGTHHPHKNIMTT--DRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYS
1041
Query 129341 K--WIEVRPLNSIRSEQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRV
129511
+ W+ S E F + FG+ I ++NGT+F + F E+ I+
Sbjct 1042 RFTWVFFLQEKSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIKH
1101
Query 129512 DWAIVAHPMTNGQVERANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL-------
129664
+++ P NG VER N +L + + Y ++F W + + +++
Sbjct 1102 EFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLHR
1158
Query 129665 ---RTTPSRATGFTP---FFLVYGAEAIL 129733
+T+ TG P +F V+G++ +
Sbjct 1159 ILKKTSYELLTGKKPNISYFRVFGSKCFI 1187
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 30/94 (32%), Positives = 45/94 (48%), Gaps = 5/94 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 1080 DNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
1138
Query 149443 -WADQLPEVVWALNTTEC-RATGFTPFCLLHGSE 149538
WA+ + +A+N R T + LL G +
Sbjct 1139 FWAEAVNTACYAINRLYLHRILKKTSYELLTGKK 1172

gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
Length=1657
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 436/659 (66%), Positives = 515/659 (78%), Gaps = 22/659 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + A++TMAIGE++P+E D+ + PSSST
Sbjct 1011 SSDVVFDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQ----PSSST
1066
Query 82442 I----NEEDHQSQQLNETID---THDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDHPVD
82284
+ E+D Q Q+ E +D D + P T ++ I +DHPVD
Sbjct 1067 MVHPPTEDDEQVPQV-EALDQGGAQDDQVMEEEAQPAPPT-------QVRAMIQRDHPVD
1118
Query 82283 QIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVW
82104
QI+GDISKGV TRSR+ +FCEH+SFVS +EP RV+EALLD DWV AM +ELNNF RNEVW
Sbjct 1119 QILGDISKGVTTRSRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVW
1178
Query 82103 ELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEA
81924
LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+GY Q+ GLDF ETFAPVARLE+
Sbjct 1179 TLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLES
1237
Query 81923 IRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGL
81744
IRILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALYGL
Sbjct 1238 IRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGL
1297
Query 81743 KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEE
81564
KQAPRAWYE LRDFLL+ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN CEE
Sbjct 1298 KQAPRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE
1357
Query 81563 FGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMA
81384

Sbjct 1358
1417
F ++M+++FEMSM+GEL++FLG Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM
FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG
Query 81383 TNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKR
81204
T+GH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KR
Sbjct 1418 TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR
1477
Query 81203 ILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQ
81024
ILRYL TP GLWYPKG+ F+L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ
Sbjct 1478 ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ
1537
Query 81023 NSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQHSR
80844
SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNES +++A NPV+HSR
Sbjct 1538 TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSR
1597
Query 80843 TKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNV
80667
TKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE FC LRSE+NVID N+
Sbjct 1598 TKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVIDSRNL
1656
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 331/473 (70%), Positives = 375/473 (79%), Gaps = 13/473 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 1170 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYAQVAGLDF
1225
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RY
Sbjct 1226 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY
1283

Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFL++N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 1284 PDHVCKLSKALYGLKQAPRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVD
1343
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKD TFISQTKYTQD+LK
Sbjct 1344 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR
1403
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 1404 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
1463
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F LWYPKGSTFDLVGY D DY K+DRKSTS TC
Sbjct 1464 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ
1523
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 1524 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
1583
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
S IR+ +NP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 1584 SDIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1636
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix
adjust.
Identities = 57/205 (28%), Positives = 92/205 (45%), Gaps = 8/205 (4%)
Frame = -1
Query 74034 EWDKMASNNNVHI-----GKPPHFMETIMIIGK*ECQCILEQWVEKIWPIVRDGFVVLKE
73870
++ ++ ++N H+ GKPPHF + + L IW IV +G
Sbjct 80 DYSRIPHSSNSHLLSIPLGKPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSS
139

Query 73869 DEPSVSDNENILTNDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHEGTTIVKSAK
73690
D P + NE I N QA V +L E+N++ L A +IW L HEG + K
Sbjct 140 DSPMLI-NEQIHRNAQATTVLLASLCREEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTK
198
Query 73689 LYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLGFNV-PDVDFTHKFLRSLPEKYET
73513
+ + +G+ +F M E + +NRL +VN+++ G D D LRS
Sbjct 199 MELVEGELGRFAMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPH
258
Query 73512 IVTMLVRSDLSTT-SPTEVLGEILT 73441
+V + + T SP E+LG+ ++
Sbjct 259 LVNNIRENPRYTKMSPEEILGKFVS 283
Score = 38.1 bits (87), Expect(2) = 0.001, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 877 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFW 922
Score = 28.9 bits (63), Expect(2) = 0.001, Method: Composition-based
stats.
Identities = 21/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query 53423 EAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
EA+ CH +N+V + + K T ++ K N+SY + V + K PK
Sbjct 924 EAVNTACHAINRVYLHRLLKKTSYELLTDNKPNVSYFRVFGSKCYILVKKGRNSKFAPKA
983
Query 53600 VDCVFLRYAFYIVGYR 53647
V+ L Y YR
Sbjct 984 VEGFLLGYDSNTKAYR 999
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix
adjust.

Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 854 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
909
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L G++ + PE W A+NT C A
Sbjct 910 TML-----GEF--KTPECFWTEAVNTA-CHA 932
>gb|AAL76007.1|AF466646_15 prpol [Zea mays]
Length=1317
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 477/1111 (43%), Positives = 659/1111 (59%), Gaps = 58/1111
(5%)
Frame = +2
Query 126791 ASKQIRIGSELDPK*EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQ
126970
A +++ +GS+L + E L+ FL N DVFAWS +D+ G+ RDV EHSL++ P KQ
Sbjct 256 AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQ
315
Query 126971 PLRRFDEEKRRGIGEEIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKA
127150
LR+ ++K G E+ +L++AG I+EV +PEWLAN V+V+K GKWRMC+D+T LNKA
Sbjct 316 RLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKA
375
Query 127151 CPKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITM
127330
CPK +PLPRID +VD+ A E +S LD YSGYHQI MK+ D+ TSFITP G YCY+ M
Sbjct 376 CPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRM
435
Query 127331 PFGLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGV
127510
P GL+NAG ++ R V IGR V YVDDI+VK+ K + ++DL+ TF + G+
Sbjct 436 PEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGL
495

Query 127511 KLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSR
127690
KLNPEKCVFGV +G LG +VS +GIEANP KI AI M P KG QR+ G LA+L+R
Sbjct 496 KLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNR
555
Query 127691 FISRFGERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVA
127870
FISR ER LP + +L+ AE F P ++A LK L + L PP +G LL+YV A
Sbjct 556 FISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTTLTPPMSGAPLLLYVAA
615
Query 127871 TTQVVSAAIVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHY
128050
+ VSAA+V E+ + + Q P+YF+SEVLS +K Y +++K+LYAV++ RKLRHY
Sbjct 616 SHSAVSAALVQEKLD--GQVKRQAPIYFVSEVLSLSKKNYTELEKVLYAVLMASRKLRHY
673
Query 128051 FESHPVIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWV
128230
F+++ +IV SS PL +I++ REA+GRI K A E+ I + R +I+SQ LADF+A+W
Sbjct 674 FQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFIADWT
733
Query 128231 DT*LPIAPIQP-----ELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNV
128395
P A + E WT+F DGS GAGA + +SP + Y +L F +NN+
Sbjct 734 ----PGAQEEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKICYAAKLDFNCTNNI
789
Query 128396 AKYEALVNGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFY
128575
A+YEALV GL +G+RR + DSQ+V + K+ +DPK+E Y D VRR+E F
Sbjct 790 AEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEASFE
849
Query 128576 GLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeap
128755
G + +I R NE AD LAK A+ +P DVF + PSV+
Sbjct 850 GFSVKNIPRGQNEHADLLAKSAAQGLPLPSDVFFETIKAPSVEL----------------
893
Query 128756 saqpeapsaqpeapsTPEGEALRVEGEQSRVTP--NRNWQTPYLQYLHRGELPLDraear
128929
+E ++P + +W+T + YL L D A +

Sbjct 894
930
-----------------------LERAVLNISPVFSEDWRTEIISYLQGKFLSDDEAYNK
Query 128930 rlarraKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGN
129109
R+ RA+ +V++ +G ELY L +C+S EG EL++EIH+G CG H R L+G
Sbjct 931 RIEARARPYVMI-EG-ELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGK
988
Query 129110 TFRQGFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQ
129289
FRQGFYWP A +DA +V+ C+GCQ AR P+ Q I TWP WGLDL+ PL
Sbjct 989 VFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQPTWPLQRWGLDLLGPLP
1048
Query 129290 KAPGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFF-TNIIHRFGVPNSIITNNGTQFT
129466
A G +++VA++ FSKWIE +PL +I S FF NI+ RFGVP +I +NGTQF
Sbjct 1049 PAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAITVDNGTQFD
1108
Query 129467 GRKFLDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELP
129646
F DFC+ ++ +A V HP +NG VERANG+I+ G+ I+N +W +L
Sbjct 1109 SEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKLIFNQPR---GKWPDQLI
1165
Query 129647 LVVWSLRTTPSRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLE
129826
VVWS TT SR+TGFTPF L++G EAI P + G R A + + A D LE
Sbjct 1166 KVVWSHNTTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIEKDALE
1225
Query 129827 EARDMALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDAQGRHKLTPPLEGPFVIA
130006
R A+ + +YQ ++ R VR ++++ G LVLR + + KL +GPF++A
Sbjct 1226 GIRLQAVENINKYQAETVKWRDRKVRLKNIEPGHLVLRRVANPETVGKLQLKWDGPFLVA
1285
Query 130007 KVLKPGTYKLANSQGEVYSNAWNIR*LRRFY 130099
+PG+Y+L + G +WN LRR+Y
Sbjct 1286 SSSRPGSYRLKDMNGSDIPRSWNADELRRYY 1316
Score =
adjust.
269 bits (687), Expect(4) = 0.0, Method: Compositional matrix

Identities = 152/248 (61%), Positives = 187/248 (75%), Gaps = 0/248 (0%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MK+ED+ TSFITP GTYC++RMPEGLKNAG +FSR+T VL+SQ+GRN+ YVDDI+V
Sbjct 413 MKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVK
472
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
S +E+H+ADL ETF + R A L+LNPEKCVFGV++GK LG LVS +GIEANP+KI+AI+
Sbjct 473 STKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAIL
532
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
M PP + Q LTGRLA+LNRFIS+SAER+LPF + L+ A+ F WG Q AF LKQ
Sbjct 533 RMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQ
592
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT*QCPVYYVSEVLTTSKCN
147881
+L +L LT P S PLLLYVAAS AVSAALV E+ Q P+Y+VSEVL+ SK N
Sbjct 593 YLIDLTTLTPPMSGAPLLLYVAASHSAVSAALVQEKLDGQVKRQAPIYFVSEVLSLSKKN
652
Query 147882 MTKLEKTF 147905
T+LEK
Sbjct 653 YTELEKVL 660
Score = 243 bits (621), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 115/246 (47%), Positives = 158/246 (64%), Gaps = 12/246 (5%)
Frame = +2
Query 148520 TKEVDALAKAAARGETLPSDVFYHVIGTPPVRNPEGLQVTNDAEGHHIVNL--IMTKDWR
148693
+ D LAK+AA+G LPSDVF+ I P V E ++N+ + ++DWR
Sbjct 861 NEHADLLAKSAAQGLPLPSDVFFETIKAPSVELLE----------RAVLNISPVFSEDWR
910
Query 148694 APITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGDQLYKKGISQPMLKCVTKTEGIQILRE
148873
I +LQG + S D KR++ R++ +V++ +LYK G+ P+LKC+++TEGI++++E

Sbjct 911
970
TEIISYLQGKFLSDDEAYNKRIEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIELMKE
Query 148874 VHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQKFSPRSGNPSQFTKLI
149053
+H+ CGSH G R L KV QGFYWP + + CE CQK + PS T+LI
Sbjct 971 IHAGLCGSHIGSRPLLGKVFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLI
1030
Query 149054 AHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEYFTK*IEARAVSMITSKTAQKFFWQNIV
149233
TWPLQRWGLD++GPLP AQGNL++ V VEYF+K IEA+ ++ ITS T QKFFWQNIV
Sbjct 1031 QPTWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIV
1090
Query 149234 CRFRSP 149251
CRF P
Sbjct 1091 CRFGVP 1096
Score = 210 bits (535), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 107/215 (50%), Positives = 139/215 (65%), Gaps = 2/215 (1%)
Frame = +1
Query 149266 IDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGKW
149445
+DNG QFDS FRDF IGTK+ F SV HP+SNG+VERANG I T I K + + +GKW
Sbjct 1101 VDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKLIFNQPRGKW
1160
Query 149446 ADQLPEVVWALNTTECRATGFTPFCLLHGSESMTPQEIKHGSPRTNTSATPDVDEPTS--
149619
DQL +VVW+ NTT R+TGFTPF LL G E++TP++ K GS R SA D + S
Sbjct 1161 PDQLIKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIE
1220
Query 149620 KDLIDGDRVFALQALNKYQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPKWEG
149799
KD ++G R+ A++ +NKYQA+T D V + G LVL R E+ GKL+ KW+G
Sbjct 1221 KDALEGIRLQAVENINKYQAETVKWRDRKVRLKNIEPGHLVLRRVANPETVGKLQLKWDG
1280
Query 149800 PFIVKSKASPSAYRLSTPTGEDLDHSWNIDNLRKF 149904
PF+V S + P +YRL G D+ SWN D LR++
Sbjct 1281 PFLVASSSRPGSYRLKDMNGSDIPRSWNADELRRY 1315

Score = 176 bits (447), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 97/206 (47%), Positives = 142/206 (69%), Gaps = 8/206 (4%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV+MASRKLR YF+A+ + V S + L ++ RN EA+ I KWAA+L+ + I +
Sbjct 657 EKVLYAVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVH
716
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSE--KVWTIHCDDAWCHagagaaaiiTSPTCVKH
148248
R++I+ Q L DFI DWT P Q+EE ++ + WT+ CD +W GAGAAA++ SP+ VK
Sbjct 717 RSSIQSQALADFIADWT-PGAQEEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKI
775
Query 148249 RYVARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTK
148428
Y A+L F CTNNIAEYE ++LGLRKL+A+G+ I+KTDS+V++G ++K K
Sbjct 776 CYAAKLDF-----NCTNNIAEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAK
830
Query 148429 DPALMQYLTAVRSLEIQFKGLTLQHM 148506
DP L +YL VR +E F+G +++++
Sbjct 831 DPKLEKYLDMVRRIEASFEGFSVKNI 856
Score = 398 bits (1023), Expect = 1e-113, Method: Compositional matrix
adjust.
Identities = 203/436 (47%), Positives = 273/436 (63%), Gaps = 13/436 (3%)
Frame = +2
Query 145961 ITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARDVDLRSAPHVDAMV
146140
ITGGSS + K+QK++ V HV + GP ++++WSH+P+TF D+ L+ PH DAMV
Sbjct 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMV
79
Query 146141 INCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGFGGKGTFPVGKI
146320
I+C + G+ +H VLVD GS ADIIF AF +M + + +PL GFGG+ +GKI
Sbjct 80 ISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGFGGRQIVALGKI
139

Query 146321 ELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQGVI
146500
+ ++F N R+E V FDIVDM YPYNAI+GRG++N FE +H YLCMKIP QG I
Sbjct 140 TMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQGPI
199
Query 146501 TVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTNDEKVKAQLQSNDGMKTVPLD
146680
++ +Q+ AR E ++ + H + A + + + S D K + L
Sbjct 200 AIHGSQEAARRAEGNWTDSK-------AIHNIDGAEACEQYKFRREKAASADQPKPMLLC
252
Query 146681 PATPKQTVVISEDLTSQDEEKLISCLSRNMDVFAWSALDLVGVNRTITEHSLSIDPSVRP
146860
+Q V++ L+ + E+ LI L N DVFAWSA DL GVNR + EHSL++DPS RP
Sbjct 253 EDIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRP
312
Query 146861 KKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANIVMVQKKSGKWRMCIDFTSL
147040
+KQRLRKMSD K E + EV RLL A I V YP WLAN VMV+K +GKWRMCIDFT L
Sbjct 313 RKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDL
372
Query 147041 NKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF------HHT
147202
NK+CPKD FPL RID +VD+AA E+MSL+DC+S YHQI+ + + + F +
Sbjct 373 NKACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCY
432
Query 147203 LRHVLLHQDAGGTQER 147250
LR ++AGG+ R
Sbjct 433 LRMPEGLKNAGGSFSR 448
Score = 67.8 bits (164), Expect(3) = 2e-26, Method: Compositional matrix
adjust.
Identities = 33/69 (48%), Positives = 43/69 (62%), Gaps = 8/69 (12%)
Frame = +2
Query 23729 SFI*LIQWS*PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKL--------VTIQKF
23884
S LIQ + PLQRW LD++GP+P A GNL+Y V+ EY KW + T+QKF
Sbjct 1025 SLTQLIQPTWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKF
1084

Query 23885 YWQNIIDRL 23911
+WQNI+ R
Sbjct 1085 FWQNIVCRF 1093
Score = 56.6 bits (135), Expect(3) = 2e-26, Method: Compositional matrix
adjust.
Identities = 32/67 (48%), Positives = 43/67 (64%), Gaps = 2/67 (3%)
Frame = +3
Query 23454 GKAHKLIEGDLFKKESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGKKIF**G
23633
+ + +IEG+L+K + A LLKC S +EG ELMK IH G+ G HI SR LLG K+F G
Sbjct 936 ARPYVMIEGELYK-HGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLG-KVFRQG
993
Query 23634 FLLAEGS 23654
F + +
Sbjct 994 FYWPKAA 1000
Score = 40.4 bits (93), Expect(3) = 2e-26, Method: Compositional matrix
adjust.
Identities = 17/33 (52%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Frame = +3
Query 23910 FRVTEALNIDNST*FDSRAFRMFYHQVGIIMHF 24008
F V +A+ +DN T FDS AFR F Q+G +HF
Sbjct 1093 FGVPKAITVDNGTQFDSEAFRDFCDQIGTKIHF 1125
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix
adjust.
Identities = 50/144 (35%), Positives = 70/144 (49%), Gaps = 0/144 (0%)
Frame = -1
Query 61095 TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQAA
60916
TT SR+ TPF L++G EA P + GS R+ ES E + D ++ R QA
Sbjct 1173 TTTSRSTGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIEKDALEGIRLQAV
1232
Query 60915 IRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPSWEGPFKVTEVCRPGC
60736
+Y ++ R V + + G LVLR+V N E + KL W+GPF V RPG

Sbjct 1233
1292
ENINKYQAETVKWRDRKVRLKNIEPGHLVLRRVANPETVGKLQLKWDGPFLVASSSRPGS
Query 60735 VRLATTKGVPLPNL*NIEHLHKFY 60664
RL G +P N + L ++Y
Sbjct 1293 YRLKDMNGSDIPRSWNADELRRYY 1316
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix
adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Frame = +1
Query 120334 IYGGQVAN-ASARHRKQERREVCSVKVAAP-VYLDWSDKPITFNQGDHPDRVPSPGKYPL
120507
I GG + A+ + +K+ +R V V V P + WS PITF+Q D + P +
Sbjct 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLK-DYPHNDAM
78
Query 120508 VVDPVIGNVRLTKVLMDGGSSLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLR
120687
V+ VI + VL+D GS+ +II+A+ ++ + P G G+++ L
Sbjct 79 VISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGF-GGRQIVALG
137
Query 120688 QLDLLVCFGTPSNFRRETLTFEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNG
120867
++ + V FG +N R E + F++V Y+A++GR F A+ + YL +K+ G
Sbjct 138 KITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQG
197
Query 120868 HYYIYG 120885
I+G
Sbjct 198 PIAIHG 203
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 15/36 (42%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
Frame = +1
Query 23617 KSFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
K F + FYW K D +LV++C+ C + R+Q QP
Sbjct 988 KVFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQP 1023
>gb|AAD11615.1| prpol [Zea mays]

Length=1317
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 474/1107 (43%), Positives = 651/1107 (59%), Gaps = 50/1107
(5%)
Frame = +2
Query 126791 ASKQIRIGSELDPK*EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQ
126970
A +++ +GS+L + E L+ FL N DVFAWS +D+ G+ RDV EHSL++ P KQ
Sbjct 256 AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQ
315
Query 126971 PLRRFDEEKRRGIGEEIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKA
127150
LR+ ++K G E+ +L++AG I+EV +PEWLAN V+V+K GKWRMC+D+T LNKA
Sbjct 316 RLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKA
375
Query 127151 CPKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITM
127330
CPK +PLPRID +VD+TA E +S LD YSGYHQI MK D+ TSFITP G YCY+ M
Sbjct 376 CPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYCYLRM
435
Query 127331 PFGLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGV
127510
P GL+NAG ++ R V IGR V YVDDI+VK+ K + ++DL+ TF + G+
Sbjct 436 PEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGL
495
Query 127511 KLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSR
127690
KLNPEKCVFGV +G LG +VS +GIEANP KI AI M P KG QR+ G LA+L+R
Sbjct 496 KLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNR
555
Query 127691 FISRFGERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVA
127870
FISR ER LP + +L+ AE F P ++A LK L + L PP G LL+YV A
Sbjct 556 FISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTALTPPMPGAPLLLYVAA
615
Query 127871 TTQVVSAAIVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHY
128050

Sbjct 616
673
+ VSAA+V E+ +G Q PVYF+SEVLS +K Y +++K+LY V++ RKLRHY
SHSAVSAALVQEKL-DGQTRK-QVPVYFVSEVLSISKKNYTELEKVLYVVLMASRKLRHY
Query 128051 FESHPVIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWV
128230
F+++ +IV SS PL +I++ REA+GRI K A E+ I + R +I+SQ LADF+A+W
Sbjct 674 FQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFIADWT
733
Query 128231 -DT*LPIAPIQPELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYE
128407
A E WT+F DGS GAGA + +SP YV +L F +NN+A+YE
Sbjct 734 PGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKTCYVAKLDFSCTNNIAEYE
793
Query 128408 ALVNGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLEL
128587
AL+ GL +G+RR + DSQ+V + K+ +DPK+E Y D VRR+E F G +
Sbjct 794 ALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEASFEGFSV
853
Query 128588 NHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNTpkpekasaqpeapsaqp
128767
+I R NE AD LAK A+ +P DVF + PSV+
Sbjct 854 KNIPRGQNEHADLLAKSAAQGLPLPSDVFFETIKAPSVEL--------------------
893
Query 128768 eapsaqpeapsTPEGEALRVEGEQSRVTP--NRNWQTPYLQYLHRGELPLDraearrlar
128941
+E ++P + +W+T + YL L D A RR+
Sbjct 894 -------------------LERAVLNISPVYSEDWRTEIISYLQGKFLSDDEAYNRRIEA
934
Query 128942 raKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFRQ
129121
RA+ +V++ +G ELY L +C+S EG EL++EIH+G CG H R L+G FRQ
Sbjct 935 RARPYVMI-EG-ELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKIFRQ
992
Query 129122 GFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQKAPG
129301
GFYWP A +DA +V+ C+GCQ AR P+ Q I WP WGLDL+ PL A G
Sbjct 993 GFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQPIWPLQRWGLDLLGPLPPAQG
1052

Query 129302 GYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFF-TNIIHRFGVPNSIITNNGTQFTGRKF
129478
+++VA++ FSKWIE +PL +I S FF NI+ RFGVP +I +NGTQF F
Sbjct 1053 NLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAF
1112
Query 129479 LDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPLVVW
129658
DFC+ ++ +A V HP +NG VERANG+I+ G+ I+N +W +L VVW
Sbjct 1113 RDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKSIFNQPR---GKWPDQLTKVVW
1169
Query 129659 SLRTTPSRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLEEARD
129838
S TT SR+TGFTPF L++G EAI P + + G R A + A+ D LE R
Sbjct 1170 SHNTTTSRSTGFTPFKLLFGDEAITPEEAKTGSIRVVASAASGSEADYSVEKDALEGIRL
1229
Query 129839 MALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDAQGRHKLTPPLEGPFVIAKVLK
130018
A+ + +YQ ++ R VR ++++ R + + KL +GPF++A +
Sbjct 1230 QAVENINKYQAETIKWRDRKVRLKNIEPDTWCFRRVANPETVGKLQLKWDGPFLVASSSR
1289
Query 130019 PGTYKLANSQGEVYSNAWNIR*LRRFY 130099
PG+Y+L + G +WN LRR+Y
Sbjct 1290 PGSYRLKDMDGNDIPRSWNADELRRYY 1316
Score = 270 bits (691), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 153/248 (62%), Positives = 186/248 (75%), Gaps = 0/248 (0%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MK ED+ TSFITP GTYC++RMPEGLKNAG +FSR+T VL+SQ+GRN+ YVDDI+V
Sbjct 413 MKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVK
472
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
S +E+H+ADL ETF + R A L+LNPEKCVFGV++GK LG LVS +GIEANP+KI+AI+
Sbjct 473 STKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAIL
532

Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
M PP + Q LTGRLA+LNRFIS+SAER+LPF + L+ A+ F WG Q AF LKQ
Sbjct 533 RMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQ
592
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT*QCPVYYVSEVLTTSKCN
147881
+L +L LT P PLLLYVAAS AVSAALV E+ T Q PVY+VSEVL+ SK N
Sbjct 593 YLIDLTALTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVYFVSEVLSISKKN
652
Query 147882 MTKLEKTF 147905
T+LEK
Sbjct 653 YTELEKVL 660
Score = 239 bits (611), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 112/242 (46%), Positives = 156/242 (64%), Gaps = 12/242 (5%)
Frame = +2
Query 148532 DALAKAAARGETLPSDVFYHVIGTPPVRNPEGLQVTNDAEGHHIVNL--IMTKDWRAPIT
148705
D LAK+AA+G LPSDVF+ I P V E ++N+ + ++DWR I
Sbjct 865 DLLAKSAAQGLPLPSDVFFETIKAPSVELLE----------RAVLNISPVYSEDWRTEII
914
Query 148706 LFLQGYYHSSDVNEAKRLKHRSKDFVLVGDQLYKKGISQPMLKCVTKTEGIQILREVHSE
148885
+LQG + S D +R++ R++ +V++ +LYK G+ P+LKC+++TEGI++++E+H+
Sbjct 915 SYLQGKFLSDDEAYNRRIEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIELMKEIHAG
974
Query 148886 TCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQKFSPRSGNPSQFTKLIAHTW
149065
CGSH G R L K+ QGFYWP + + CE CQK + PS T+LI W
Sbjct 975 LCGSHIGSRPLLGKIFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQPIW
1034
Query 149066 PLQRWGLDIVGPLPTAQGNLKFTFVIVEYFTK*IEARAVSMITSKTAQKFFWQNIVCRFR
149245
PLQRWGLD++GPLP AQGNL++ V VEYF+K IEA+ ++ ITS T QKFFWQNIVCRF
Sbjct 1035 PLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFG
1094

Query 149246 SP 149251
P
Sbjct 1095 VP 1096
Score = 203 bits (516), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 103/215 (48%), Positives = 134/215 (62%), Gaps = 2/215 (1%)
Frame = +1
Query 149266 IDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGKW
149445
+DNG QFDS FRDF IGTK+ F SV HP+SNG+VERANG I T I K + + +GKW
Sbjct 1101 VDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKSIFNQPRGKW
1160
Query 149446 ADQLPEVVWALNTTECRATGFTPFCLLHGSESMTPQEIKHGSPRTNTSAT--PDVDEPTS
149619
DQL +VVW+ NTT R+TGFTPF LL G E++TP+E K GS R SA + D
Sbjct 1161 PDQLTKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEEAKTGSIRVVASAASGSEADYSVE
1220
Query 149620 KDLIDGDRVFALQALNKYQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPKWEG
149799
KD ++G R+ A++ +NKYQA+T D V + R E+ GKL+ KW+G
Sbjct 1221 KDALEGIRLQAVENINKYQAETIKWRDRKVRLKNIEPDTWCFRRVANPETVGKLQLKWDG
1280
Query 149800 PFIVKSKASPSAYRLSTPTGEDLDHSWNIDNLRKF 149904
PF+V S + P +YRL G D+ SWN D LR++
Sbjct 1281 PFLVASSSRPGSYRLKDMDGNDIPRSWNADELRRY 1315
Score = 176 bits (447), Expect(4) = 0.0, Method: Compositional matrix
adjust.
Identities = 96/206 (47%), Positives = 143/206 (69%), Gaps = 8/206 (4%)
Frame = +1
Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K Y V+MASRKLR YF+A+ + V S + L ++ RN EA+ I KWAA+L+ + I +
Sbjct 657 EKVLYVVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVH
716
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSE--KVWTIHCDDAWCHagagaaaiiTSPTCVKH
148248

Sbjct 717
775
R++I+ Q L DFI DWT P Q+EE ++ + WT+ CD +W GAGAAA++ SP+ VK
RSSIQSQALADFIADWT-PGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKT
Query 148249 RYVARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTK
148428
YVA+L F+ CTNNIAEYE ++LGLRKL+A+G+ ++KTDS+V++G ++K K
Sbjct 776 CYVAKLDFS-----CTNNIAEYEALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKSCKAK
830
Query 148429 DPALMQYLTAVRSLEIQFKGLTLQHM 148506
DP L +YL VR +E F+G +++++
Sbjct 831 DPKLEKYLDMVRRVEASFEGFSVKNI 856
Score = 394 bits (1013), Expect = 3e-112, Method: Compositional matrix
adjust.
Identities = 201/436 (46%), Positives = 272/436 (62%), Gaps = 13/436 (3%)
Frame = +2
Query 145961 ITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARDVDLRSAPHVDAMV
146140
ITGGSS + K+QK++ V HV + GP ++++WSH+P+TF D+ L+ PH DAMV
Sbjct 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMV
79
Query 146141 INCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGFGGKGTFPVGKI
146320
I+C + G+ +H VLVD GS ADIIF AF +M + + +PL GFGG+ +GKI
Sbjct 80 ISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLCGFGGRQIVALGKI
139
Query 146321 ELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQGVI
146500
+ ++F N R+E V FDIVDM YPYNAI+GRG++N FE +H YLCMK+P QG I
Sbjct 140 TMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKMPSDQGPI
199
Query 146501 TVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTNDEKVKAQLQSNDGMKTVPLD
146680
++ +Q+ AR E ++ + H + A + + + S D K + L
Sbjct 200 AIHGSQEAARRAEGNWTDSK-------AIHNIDGAEACEXYKFRREKAASADQPKPMLLC
252
Query 146681 PATPKQTVVISEDLTSQDEEKLISCLSRNMDVFAWSALDLVGVNRTITEHSLSIDPSVRP
146860

Sbjct 253
312
+Q V++ L+ + E+ LI L N DVFAWSA DL GVNR + EHSL++DPS RP
EDIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRP
Query 146861 KKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANIVMVQKKSGKWRMCIDFTSL
147040
+KQRLRKMSD K E + EV RLL A I V YP WLAN VMV+K +GKWRMCIDFT L
Sbjct 313 RKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDL
372
Query 147041 NKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF------HHT
147202
NK+CPKD FPL RID +VD+ A E+MSL+DC+S YHQI+ + + + F +
Sbjct 373 NKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYCY
432
Query 147203 LRHVLLHQDAGGTQER 147250
LR ++AGG+ R
Sbjct 433 LRMPEGLKNAGGSFSR 448
Score = 65.9 bits (159), Expect(3) = 5e-26, Method: Compositional matrix
adjust.
Identities = 33/69 (48%), Positives = 42/69 (61%), Gaps = 8/69 (12%)
Frame = +2
Query 23729 SFI*LIQWS*PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKL--------VTIQKF
23884
S LIQ PLQRW LD++GP+P A GNL+Y V+ EY KW + T+QKF
Sbjct 1025 SLTQLIQPIWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKF
1084
Query 23885 YWQNIIDRL 23911
+WQNI+ R
Sbjct 1085 FWQNIVCRF 1093
Score = 57.0 bits (136), Expect(3) = 5e-26, Method: Compositional matrix
adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 2/67 (3%)
Frame = +3
Query 23454 GKAHKLIEGDLFKKESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGKKIF**G
23633
+ + +IEG+L+K + A LLKC S +EG ELMK IH G+ G HI SR LLG KIF G
Sbjct 936 ARPYVMIEGELYK-HGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLG-KIFRQG

993
Query 23634 FLLAEGS 23654
F + +
Sbjct 994 FYWPKAA 1000
Score = 40.4 bits (93), Expect(3) = 5e-26, Method: Compositional matrix
adjust.
Identities = 17/33 (52%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Frame = +3
Query 23910 FRVTEALNIDNST*FDSRAFRMFYHQVGIIMHF 24008
F V +A+ +DN T FDS AFR F Q+G +HF
Sbjct 1093 FGVPKAITVDNGTQFDSEAFRDFCDQIGTKIHF 1125
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix
adjust.
Identities = 55/186 (30%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Frame = +1
Query 120334 IYGGQVAN-ASARHRKQERREVCSVKVAAP-VYLDWSDKPITFNQGDHPDRVPSPGKYPL
120507
I GG + A+ + +K+ +R V V V P + WS PITF+Q D + P +
Sbjct 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLK-DYPHNDAM
78
Query 120508 VVDPVIGNVRLTKVLMDGGSSLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLR
120687
V+ VI + VL+D GS+ +II+A+ ++ + P G G+++ L
Sbjct 79 VISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLCGF-GGRQIVALG
137
Query 120688 QLDLLVCFGTPSNFRRETLTFEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNG
120867
++ + V FG +N R E + F++V Y+A++GR F A+ + YL +KM G
Sbjct 138 KITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKMPSDQG
197
Query 120868 HYYIYG 120885
I+G
Sbjct 198 PIAIHG 203
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix

adjust.
Identities = 47/144 (33%), Positives = 65/144 (45%), Gaps = 0/144 (0%)
Frame = -1
Query 61095 TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQAA
60916
TT SR+ TPF L++G EA P E GS RV S E + D ++ R QA
Sbjct 1173 TTTSRSTGFTPFKLLFGDEAITPEEAKTGSIRVVASAASGSEADYSVEKDALEGIRLQAV
1232
Query 60915 IRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPSWEGPFKVTEVCRPGC
60736
+Y ++ R V + + R+V N E + KL W+GPF V RPG
Sbjct 1233 ENINKYQAETIKWRDRKVRLKNIEPDTWCFRRVANPETVGKLQLKWDGPFLVASSSRPGS
1292
Query 60735 VRLATTKGVPLPNL*NIEHLHKFY 60664
RL G +P N + L ++Y
Sbjct 1293 YRLKDMDGNDIPRSWNADELRRYY 1316
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 15/36 (42%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
Frame = +1
Query 23617 KSFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
K F + FYW K D +LV++C+ C + R+Q QP
Sbjct 988 KIFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQP 1023
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length=2319
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 416/646 (64%), Positives = 504/646 (78%), Gaps = 37/646 (6%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDE-------NSVVV
82461
+ DV FDE+NGSQ N D VG +L ++K +AIGE++P+E DDE N VV
Sbjct 1145 AIDVTFDESNGSQGHVSN-DTVGNEKLPCESIKKLAIGEVRPQERDDEEGTLWMTNEVVD
1203
Query 82460 I--------------PSSSTI--NEEDHQSQQLNETIDTHDQGTSRPQIPPNASTSNYQT
82329

Sbjct 1204
1260
+ PS+S+ +EE+HQ T+ +Q ++P + T+ +
VGARVVSDNVSTQANPSTSSHPNHEENHQRM---PTVVEDEQENIDGEVPLDQVTNEEEQ
Query 82328 VSR--------IHHSIVKDHPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEA
82173
+ R +HH+I +DHPVD I+G I +GV TRSR+A+FCE +SFVS +EP +V+EA
Sbjct 1261 IQRHPSVPHPRVHHTIQRDHPVDNILGSIRRGVTTRSRLANFCEFYSFVSSLEPLKVEEA
1320
Query 82172 LLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVA
81993
L D DW+ AM +ELNNF RNEVW LV+RPK NVIGTKWVFRNK +++GVV +NKARLVA
Sbjct 1321 LDDPDWITAMQEELNNFTRNEVWSLVQRPK-QNVIGTKWVFRNKQDENGVVTKNKARLVA
1379
Query 81992 QGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQ
81813
QGYTQ+EGLDFGET+APVARLE+IRIL+AYA H+ KLYQMDVKSAFLNG + E VYVEQ
Sbjct 1380 QGYTQVEGLDFGETYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQ
1439
Query 81812 PPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKD
81633
PPGFEDPK+PNHV+ L KALYGLKQAPRAWY+ L+DFL+ F IGK D+TLFT+++ +
Sbjct 1440 PPGFEDPKKPNHVYLLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLFTRKVDNE
1499
Query 81632 LFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQS
81453
LFVCQIYVDDIIFGSTN+ FCEEF K+M+ FEMSM+GEL +FLG Q+KQLK+G F+ Q+
Sbjct 1500 LFVCQIYVDDIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEGTFLCQT
1559
Query 81452 KYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVM
81273
KY +DMLKKFG+E AK KTPM +NGHLDL+E G VDQKLYRS+IGSLLY+ ASRPD+M
Sbjct 1560 KYTQDMLKKFGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCASRPDIM
1619
Query 81272 FSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVD
81093
SVCMCARFQA+P++ HL A KRILRYL +T N+GLWYPKG+ F+L+GYSDSDYAGCKVD
Sbjct 1620 LSVCMCARFQANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDYAGCKVD
1679

Query 81092 RKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFK
80913
RKST+G CQFLGRSLVSWSSKKQN VALSTAEAEYI+AG CCAQLLWMKQTL D+ F
Sbjct 1680 RKSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRDFGCEFN
1739
Query 80912 NVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIY 80775
+PL+CDNESA+KLA NPVQHSRTKHIDIR HFLRDH KGDI ++
Sbjct 1740 KIPLLCDNESAIKLANNPVQHSRTKHIDIRRHFLRDHEAKGDIELF 1785
Score = 558 bits (1438), Expect = 1e-160, Method: Compositional matrix
adjust.
Identities = 283/459 (62%), Positives = 344/459 (75%), Gaps = 12/459 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVWSLV PKQ RN+ Q + V + +K + A G F
Sbjct 1335 NNFTRNEVWSLVQRPKQNVIGTKWVFRNK----QDENGVVTKNKARLVAQGYTQVEGLDF
1390
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES IL+AYAT++ FKL+QMDVK+AFLNGP++E VYVE+ P FE+ +
Sbjct 1391 GE--TYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQPPGFEDPKK
1448
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVY L KALY LK+AP WY+CLKDFLI N F + K +TLFT+ D +LFVCQI VD
Sbjct 1449 PNHVYLLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLFTRKVDNELFVCQIYVD
1508
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+K CEEFS++M ++EMSMMGEL YFL FQVKQLK+ TF+ QTKYTQD+LK
Sbjct 1509 DIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEGTFLCQTKYTQDMLKK
1568
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F ++ AK KT M +NGHLDL+ GK VDQK+ RSMIGSLLYL SR I+LSVCMCARF
Sbjct 1569 FGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCASRPDIMLSVCMCARF
1628

Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
Q++ K+CHL VK+ILRYLV T + LWYPKGS FDL+GY D DY K+DRKST+ TC
Sbjct 1629 QANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDYAGCKVDRKSTTGTCQ
1688
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSWSSK+QN VALST +A+YI A QLL M+QTLRDFG +K+PLLCDN+
Sbjct 1689 FLGRSLVSWSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRDFGCEFNKIPLLCDNE
1748
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHV 142788
SAI+L +NP++HSRTKHIDI+ HFLRDH+ + DIE+ H
Sbjct 1749 SAIKLANNPVQHSRTKHIDIRRHFLRDHEAKGDIELFHA 1787
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix
adjust.
Identities = 38/158 (24%), Positives = 77/158 (49%), Gaps = 3/158 (2%)
Frame = -1
Query 73911 IWPIVRDGFVVLKEDEPSVSDN-ENILTNDQAMNVFYDALDINEFNRIKNLTTAHEIWVK
73735
+W IV G + E + + + N QA+++ +L E+ +++ A +IW
Sbjct 153 LWEIVNVGMYKPAQGEEMTPEMMQEVHRNAQAVSIIKGSLCPEEYRKVQGREDARDIWNI
212
Query 73734 LMEIHEGTTIVKSAKLYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLGF-NVPDVD
73558
L HEG K ++ + + ++ + ES+ +F+RL +VN+++ LG + D
Sbjct 213 LRMSHEGDPKAKRHRVEALESELARYDWTKGESLQSLFDRLMVLVNKIRVLGSEDWSDSK
272
Query 73557 FTHKFLRSLPEKYETIVTMLV-RSDLSTTSPTEVLGEI 73447
T F+R+ EK +++ M+ R D +P ++ +I
Sbjct 273 VTRLFMRAYKEKDKSLARMIRDRDDYEDMTPHQLFAKI 310
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix
adjust.
Identities = 36/145 (25%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Frame = +2
Query 129167 RTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSK
129343

Sbjct 900
958
R C CQ +Q +P Q+ + P + +DL P+ + GG + LV +D FS+
RVCGACQ-AGKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSR
Query 129344 WIEVRPLNSIRSEQAV--AFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
+ V L+ Q + F + F + + ++NGT+F +F + I+ +
Sbjct 959 FTWVFFLSDKGETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHE
1018
Query 129515 WAIVAHPMTNGQVERANGMILQGLK 129589
+++ P NG VER N +++ +
Sbjct 1019 FSVPYTPQQNGVVERKNRTLIEAAR 1043
Score = 37.0 bits (84), Expect(2) = 2e-04, Method: Composition-based
stats.
Identities = 17/40 (43%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Frame = +3
Query 53301 HERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
HE +V Y+ Q NGV E KNRTL + ML+ +W
Sbjct 1017 HEFSVPYTPQQNGVVERKNRTLIEAARTMLDEYKTPDNFW 1056
Score = 32.7 bits (73), Expect(2) = 2e-04, Method: Composition-based
stats.
Identities = 14/42 (33%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L K E K + A+N+ + KIK
Sbjct 950 LVIVDDFSRFTWVFFLSDKGETQEILKKFMRRAQNEFELKIK 991
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix
adjust.
Identities = 25/74 (34%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKK---G
149439
DNG +F + +F G K F+ Y P+ NGVVER N + A + +LD+ K
Sbjct 996 DNGTEFKNTGVEEFLGEEGIKHEFSVPYTPQQNGVVERKNRTLIEAART-MLDEYKTPDN
1054

Query 149440 KWADQLPEVVWALN 149481
WA+ + A+N
Sbjct 1055 FWAEAVNTACHAIN 1068
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix
adjust.
Identities = 21/103 (20%), Positives = 50/103 (49%), Gaps = 2/103 (2%)
Frame = -1
Query 77253 RFGETAGLRHHPAVINKIARVTILPKSGDKSKIRDKFWNIIQHIM--NGEVMNIVLFMMR
77080
++ E+ + + IN + R+T++PK G++ I + ++ + + E +N+ + +
Sbjct 2009 KYWESTNIHKYYCYINSLCRMTLIPKGGNQMNILGESKVLLSFMKPNSSERINVFDMIWQ
2068
Query 77079 QLNDLKMDKNQNLAYAPYIMALIKSKTRFEGPCEIVHTPFRPF 76951
++ + +AP+IM +I+ T+F H + PF
Sbjct 2069 EIIHAACFPLKGCLHAPFIMKMIEVVTQFRFEKGTRHQSYTPF 2111
>gb|AAL75996.1|AF466646_4 putative gag protein [Zea mays]
Length=505
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 479/505 (95%), Positives = 491/505 (97%), Gaps = 0/505 (0%)
Frame = +2
Query 35072 MPPKKASAPGAGTLQPLDPNQDVLSLREARSQKRKATSPTPPEDDLDqeiqnleilqqqv
35251
M PKKASA G LQPLD NQ+ +SLREARSQKRKA SPTPPED++DQEI+++E+L QQV
Sbjct 1 MAPKKASATGTTALQPLDHNQETVSLREARSQKRKAVSPTPPEDEIDQEIRDMEMLHQQV
60
Query 35252 qRKKEKMARLAELQRQIDEASEEVRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
35431
QRKKEKMARLAELQRQIDEASEEVRHL QDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
Sbjct 61 QRKKEKMARLAELQRQIDEASEEVRHLTQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
120
Query 35432 FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
35611
FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
Sbjct 121 FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
180

Query 35612 FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
35791
FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
Sbjct 181 FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
240
Query 35792 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
35971
AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
Sbjct 241 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
300
Query 35972 NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDDKGSQQQRPqyssqasgqqqs
36151
NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIH+STQNDD+GSQQQRPQ SSQASGQQQS
Sbjct 301 NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHNSTQNDDRGSQQQRPQCSSQASGQQQS
360
Query 36152 sfrppsprgrgargfggrfgDQPRRIFCLFCGENKGHTTRMCHVTiqkqkeiaeaaaqqa
36331
SFRPP+PRGRGARGF GRFGDQPRRIFCLFCGENKGHTTRMCHVTIQKQKEIAEAAAQQA
Sbjct 361 SFRPPAPRGRGARGFRGRFGDQPRRIFCLFCGENKGHTTRMCHVTIQKQKEIAEAAAQQA
420
Query 36332 qPKQVMHTASYHSPYIPEYVGNHpavsvasasqpqaswqqpppppplqqgqqpegsqYTP
36511
QPKQVMHTASYHSPYI EYVGNHPA+SVASASQPQASWQQPPPPPPLQQGQQPEGSQY P
Sbjct 421 QPKQVMHTASYHSPYIREYVGNHPALSVASASQPQASWQQPPPPPPLQQGQQPEGSQYAP
480
Query 36512 HQRDFREQSEARTVNSTVPESKHIY 36586
HQRDFREQSEARTVNSTVPESKHIY
Sbjct 481 HQRDFREQSEARTVNSTVPESKHIY 505
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix
adjust.
Identities = 83/282 (29%), Positives = 149/282 (53%), Gaps = 38/282 (13%)
Frame = +2
Query 144566 QLRALHIKNRNLQKQKE----ILEAKRQRVSAQAKVRQMIRDEEKRA---RELEQEIALM
144724
++R + + ++ +Q++KE + E +RQ A +VR + +DE+ R ++L QE
Sbjct 49 EIRDMEMLHQQVQRKKEKMARLAELQRQIDEASEEVRHLTQDEQHRRPQHQDLHQEGFPN
108

Query 144725 QHEGQHDLQHGPPLQQRAPAGDLFIPQRGPFIPHAAAFQGINYL-DERSPLAPQLQVSPW
144901
+ + + HG N++ D+ SPL+ +LQ +PW
Sbjct 109 EDDWYDNFHHG------------------------------NFVFDDASPLSAELQATPW
138
Query 144902 PANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPP
145081
P +++ ++G++DP ++MSY+ ++S GG+ + MAKSF++A+ TWY+ L P
Sbjct 139 PPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAVRSVAQTWYSSLRP
198
Query 145082 LSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDD
145261
+I SW+ L+D L +FQG+Q L C +E L+ Y R+FL L++Q P+V +
Sbjct 199 GTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPN
258
Query 145262 QIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSE 145387
+I I I GLR + PP+ L++L Q ++Y+R++
Sbjct 259 EIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD 300
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix
adjust.
Identities = 52/174 (30%), Positives = 90/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query 62061 AALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALS
61882
+ L+ L+A W ++P Q +DG S+P +FL Y +++ GG+ +VMA F +A+
Sbjct 127 SPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAVR
186
Query 61881 KPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAH-LHAVRQEPRETLRAFISY
61705
A+TW +L PG+I SW++L ++F +Q V A L Q+ E L+A++
Sbjct 187 SVAQTWYSSLRPGTITSWQKLKDLLLTSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVRR
245
Query 61704 FTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARA 61543
F ++R P + + +I A +G+R + A +T+ L D+ RA
Sbjct 246 FLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRA 299

Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix
adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 1/142 (1%)
Frame = +1
Query 119485 YSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLV
119664
+ G + P+ +L Y G + +++ ++ + + A+ L PG I++W L
Sbjct 150 FDGHSDPKQFLMSYEATVSSYG-GNASVMAKSFVMAVRSVAQTWYSSLRPGTITSWQKLK
208
Query 119665 QAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG
119844
+FQG +P ++ L C Q E L+ Y+RRF + R + P V + VI A + G
Sbjct 209 DLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKG
268
Query 119845 TTCRDLVSKLGRKTPTRVSELM 119910
RK P + +L+
Sbjct 269 LRPGPSAQYFARKPPQTLEKLL 290
>gb|AAP94591.1| Zeon1 gag protein [Zea mays]
Length=505
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 467/505 (92%), Positives = 484/505 (96%), Gaps = 0/505 (0%)
Frame = +2
Query 35072 MPPKKASAPGAGTLQPLDPNQDVLSLREARSQKRKATSPTPPEDDLDqeiqnleilqqqv
35251
M PKKASA GA LQPLDPNQ+ +SLREAR+QKRKA SPT ED+LDQEI+++E+L QQV
Sbjct 1 MAPKKASATGAAALQPLDPNQETVSLREARNQKRKAVSPTIQEDELDQEIRDMEMLHQQV
60
Query 35252 qRKKEKMARLAELQRQIDEASEEVRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
35431
QRKKEKMARLAELQRQIDEASEEVRHL DEQ+RRPQ +DLHQEGF NEDDWYDNFHHGN
Sbjct 61 QRKKEKMARLAELQRQIDEASEEVRHLTHDEQNRRPQQKDLHQEGFFNEDDWYDNFHHGN
120
Query 35432 FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
35611
FVFDDASPLSAELQATPWP SYKPPQLP+FDGHSDPKQFLMSYEATVSSYGGNA+VMAKS
Sbjct 121 FVFDDASPLSAELQATPWPSSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKS

180
Query 35612 FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
35791
FVMAVRSVAQTWYSSLRPGTITSWQKLKD+LLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
Sbjct 181 FVMAVRSVAQTWYSSLRPGTITSWQKLKDMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
240
Query 35792 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
35971
AYVRRFLRLRAQAPTVPNEIV EAMIKGLRPGP+AQYFARKPPQTLEKLLQKMDEYIRAD
Sbjct 241 AYVRRFLRLRAQAPTVPNEIVTEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRAD
300
Query 35972 NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDDKGSQQQRPqyssqasgqqqs
36151
NDFRQRREEAFRFSEMTRGFGGR YPRHVRSIH+STQNDDKGSQQ RPQ SSQASGQQQS
Sbjct 301 NDFRQRREEAFRFSEMTRGFGGRSYPRHVRSIHNSTQNDDKGSQQNRPQCSSQASGQQQS
360
Query 36152 sfrppsprgrgargfggrfgDQPRRIFCLFCGENKGHTTRMCHVTiqkqkeiaeaaaqqa
36331
SFRPP+PRGRGARGFGGRFGDQPRRIFCLFCGENKGHTTRMCHVTIQKQKEIAEAAAQQA
Sbjct 361 SFRPPAPRGRGARGFGGRFGDQPRRIFCLFCGENKGHTTRMCHVTIQKQKEIAEAAAQQA
420
Query 36332 qPKQVMHTASYHSPYIPEYVGNHpavsvasasqpqaswqqpppppplqqgqqpegsqYTP
36511
QPKQVMHTASYHSPYIPEYVGNHPA+S ASASQP ASWQQPPPPPPLQQGQQPEGSQY P
Sbjct 421 QPKQVMHTASYHSPYIPEYVGNHPALSAASASQPSASWQQPPPPPPLQQGQQPEGSQYAP
480
Query 36512 HQRDFREQSEARTVNSTVPESKHIY 36586
HQRDFREQSEARTVNSTVPESKHIY
Sbjct 481 HQRDFREQSEARTVNSTVPESKHIY 505
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix
adjust.
Identities = 86/293 (29%), Positives = 153/293 (52%), Gaps = 37/293 (13%)
Frame = +2
Query 144566 QLRALHIKNRNLQKQKE----ILEAKRQRVSAQAKVRQMIRDEEKR---ARELEQEIALM
144724
++R + + ++ +Q++KE + E +RQ A +VR + DE+ R ++L QE
Sbjct 49 EIRDMEMLHQQVQRKKEKMARLAELQRQIDEASEEVRHLTHDEQNRRPQQKDLHQEGFFN

108
Query 144725 QHEGQHDLQHGPPLQQRAPAGDLFIPQRGPFIPHAAAFQGINYLDERSPLAPQLQVSPWP
144904
+ + + HG F+ D+ SPL+ +LQ +PWP
Sbjct 109 EDDWYDNFHHGN------------------FV-----------FDDASPLSAELQATPWP
139
Query 144905 ANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPPL
145084
++++ ++G++DP ++MSY+ ++S GG+ A MAKSF++A+ TWY+ L P
Sbjct 140 SSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKSFVMAVRSVAQTWYSSLRPG
199
Query 145085 SIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDDQ
145264
+I SW+ L+D L +FQG+Q L C +E L+ Y R+FL L++Q P+V ++
Sbjct 200 TITSWQKLKDMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNE
259
Query 145265 IAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSE-ELHQHKVESQR
145420
I I GLR + PP+ L++L Q ++Y+R++ + Q + E+ R
Sbjct 260 IVTEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRADNDFRQRREEAFR 312
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix
adjust.
Identities = 53/174 (30%), Positives = 90/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query 62061 AALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALS
61882
+ L+ L+A W S ++P Q +DG S+P +FL Y +++ GG+ AVMA F +A+
Sbjct 127 SPLSAELQATPWPSSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKSFVMAVR
186
Query 61881 KPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAH-LHAVRQEPRETLRAFISY
61705
A+TW +L PG+I SW++L ++F +Q V A L Q+ E L+A++
Sbjct 187 SVAQTWYSSLRPGTITSWQKLKDMLLTSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVRR
245
Query 61704 FTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARA 61543
F ++R P + + + A +G+R + A +T+ L D+ RA
Sbjct 246 FLRLRAQAPTVPNEIVTEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRA 299

Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix
adjust.
Identities = 35/142 (25%), Positives = 62/142 (44%), Gaps = 1/142 (1%)
Frame = +1
Query 119485 YSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLV
119664
+ G + P+ +L Y G + ++ ++ + + A+ L PG I++W L
Sbjct 150 FDGHSDPKQFLMSYEATVSSYG-GNAAVMAKSFVMAVRSVAQTWYSSLRPGTITSWQKLK
208
Query 119665 QAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG
119844
+FQG +P ++ L C Q E L+ Y+RRF + R + P V + V A + G
Sbjct 209 DMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVTEAMIKG
268
Query 119845 TTCRDLVSKLGRKTPTRVSELM 119910
RK P + +L+
Sbjct 269 LRPGPAAQYFARKPPQTLEKLL 290
>gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays]
Length=1553
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 397/661 (60%), Positives = 481/661 (73%), Gaps = 65/661 (10%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + A++TMAIG+++P+E +++ PSSST
Sbjct 946 SSDVVFDETNGSPREQVVDLDDVDEEDVPTAAIRTMAIGDVRPQEQKEQDQ----PSSST
1001
Query 82442 I-------NEEDHQSQQLNE--TIDTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKDHP
82290
+ +E+ HQ + ++ D H PP +++ +I +DHP
Sbjct 1002 MVHPPTQDDEQVHQEEACDQGGAQDVHVIEEEAQPAPP----------TQVRATIQRDHP
1051
Query 82289 VDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARNE
82110

Sbjct 1052
1072
VDQI+GDISKGV TRSR+ +F
VDQILGDISKGVTTRSRLVNF---------------------------------------
Query 82109 VWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVARL
81930
W LV RPK NV+GTKWVFRNK ++ GVV RNKARLVA+G Q+ GLDF ETFAPVARL
Sbjct 1073 FWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARLVAKGCAQVAGLDFEETFAPVARL
1131
Query 81929 EAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALY
81750
E+IRILLAY H+ +L+QMDVKSAFLNG I E VYVEQPPGFED + P+HV KLSKALY
Sbjct 1132 ESIRILLAYVAHHSFRLFQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALY
1191
Query 81749 GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFC
81570
GL QAPRAWYE LR+FL++ FK+GK D TLFTK DLFVCQIYVDDIIFGSTN C
Sbjct 1192 GLMQAPRAWYECLRNFLIANAFKVGKADPTLFTKTCNGDLFVCQIYVDDIIFGSTNQKSC
1251
Query 81569 EEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTP
81390
EEF ++M+++FEM M+GELS+FLG Q+KQLKDG FISQ+KY +D++K+FG+++AKP KTP
Sbjct 1252 EEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTP
1311
Query 81389 MATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQASPREIHLKAA
81210
M T+GH+DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARFQ+ PRE HL A
Sbjct 1312 MGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAV
1371
Query 81209 KRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSK
81030
KRILRYL TP G+WYPKG+ F+LIGYSDSDYAGCKVDRKSTSG CQFLGRSLVSWSSK
Sbjct 1372 KRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWSSK
1431
Query 81029 KQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNESAVKLATNPVQH
80850
KQ SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNESA+++A NPV+H
Sbjct 1432 KQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLNKVPLLCDNESAIRMADNPVEH
1491

Query 80849 SRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISN
80670
SRTKHIDIRHHFLRDH KGDI ++ + T++QLADIFTKPLDE+ FC LRSE+NV+D N
Sbjct 1492 SRTKHIDIRHHFLRDHQQKGDIEVFYVSTENQLADIFTKPLDESTFCRLRSEINVLDSRN
1551
Query 80669 V 80667
+
Sbjct 1552 L 1552
Score = 627 bits (1617), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 318/468 (68%), Positives = 367/468 (78%), Gaps = 13/468 (3%)
Frame = +1
Query 141445 NEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRFGL**D
141606
N W+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 1071 NFFWTLVPRPKQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGCAQVAGLDFEE--T
1124
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
F+PVARLES ILLAY H+SF+LFQMDVK+AFLNGPIKEEVYVE+ P FE++RYP+HV
Sbjct 1125 FAPVARLESIRILLAYVAHHSFRLFQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVC
1184
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
KLSKALY L +AP WYECL++FLI+N+FKV K TLFTKTC+GDLFVCQI VDDIIFG
Sbjct 1185 KLSKALYGLMQAPRAWYECLRNFLIANAFKVGKADPTLFTKTCNGDLFVCQIYVDDIIFG
1244
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKD
142146
STNQKSCEEFSR+M QK+EM MMGEL+YFL FQVKQLKD TFISQTKYTQD++K F +KD
Sbjct 1245 STNQKSCEEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQDLIKRFGMKD
1304
Query 142147 AKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSDAK
142326
AKP KT MGT+GH+DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARFQSD +
Sbjct 1305 AKPAKTPMGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPR
1364

Query 142327 ECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGRS
142506
ECHL VK+ILRYLV T F +WYPKGSTFDL+GY D DY K+DRKSTS TC FLGRS
Sbjct 1365 ECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKSTSGTCQFLGRS
1424
Query 142507 LVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNKSAIRL
142686
LVSWSSK+Q VALST +A+Y+ A QLL MRQTLRDFG NL+KVPLLCDN+SAIR+
Sbjct 1425 LVSWSSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLNKVPLLCDNESAIRM
1484
Query 142687 VDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL 142827
DNP+EHSRTKHIDI+HHFLRDHQQ+ DIE+ +VST +QL DIF+ L
Sbjct 1485 ADNPVEHSRTKHIDIRHHFLRDHQQKGDIEVFYVSTENQLADIFTKPL 1532
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix
adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 0/92 (0%)
Frame = -1
Query 73854 SDNENILTNDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHEGTTIVKSAKLYVCK
73675
S N ++L+ A V +L +E++++ L A +IW L HEG + K+ + +
Sbjct 89 SSNAHLLSIPLATTVLLASLCRDEYHKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVE
148
Query 73674 GKFEQFIMKEDESVSDMFNRLNEIVNELKGLG 73579
G+ +F M E + +NRL +VN+++ G
Sbjct 149 GELGRFAMIRGEEPTQTYNRLKTLVNKIRSYG 180
Score = 38.1 bits (87), Expect(2) = 0.001, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W
Sbjct 812 EEEGIKHEFSTPYTPQQNGVVERKNRTLIDMARTMLGEFKTPERFW 857
Score = 28.9 bits (63), Expect(2) = 0.001, Method: Composition-based
stats.
Identities = 21/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Frame = +2
Query 53423 EAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
EA+ CH +N+V + + K T ++ K N+SY + V + K PK
Sbjct 859 EAVSTACHAINRVYLHRLLKKTSYELLTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKA
918
Query 53600 VDCVFLRYAFYIVGYR 53647
V+ L Y YR
Sbjct 919 VEGFLLGYDSNTKAYR 934
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix
adjust.
Identities = 30/105 (29%), Positives = 48/105 (46%), Gaps = 7/105 (7%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + ++ G K F++ Y P+ NGVVER N + +
Sbjct 789 LKVKKIRS----DNGSEFKNLQVEEYLEEEGIKHEFSTPYTPQQNGVVERKNRTLIDMAR
844
Query 149413 KRLLDDKKGK--WADQLPEVVWALNTTEC-RATGFTPFCLLHGSE 149538
L + K + W + + A+N R T + LL G++
Sbjct 845 TMLGEFKTPERFWTEAVSTACHAINRVYLHRLLKKTSYELLTGNK 889
>gb|AAK73110.1|AF391808_20 Zeon1 gag protein [Zea mays]
gb|ACA21851.1| Zeon1 gag [Zea mays]
Length=505
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 459/505 (91%), Positives = 483/505 (96%), Gaps = 0/505 (0%)
Frame = +2
Query 35072 MPPKKASAPGAGTLQPLDPNQDVLSLREARSQKRKATSPTPPEDDLDqeiqnleilqqqv
35251
M PKKASA GA LQPLDPNQ+ +SLREAR+QKRKA SPT ED+LDQEI+++E+L QQV
Sbjct 1 MAPKKASATGAAALQPLDPNQETVSLREARNQKRKAVSPTIQEDELDQEIRDMEMLHQQV
60
Query 35252 qRKKEKMARLAELQRQIDEASEEVRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
35431

Sbjct 61
120
QRKKEKMARLAELQRQIDEASEEVRHL DEQ+RRPQ +DLHQEGF NEDDWYDNFHHGN
QRKKEKMARLAELQRQIDEASEEVRHLTHDEQNRRPQQKDLHQEGFFNEDDWYDNFHHGN
Query 35432 FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
35611
FVFDDASPLSAELQATPWPPSYKPPQLP+FDGHSDPKQFLMSYEATVSSYGGNA+VMAKS
Sbjct 121 FVFDDASPLSAELQATPWPPSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKS
180
Query 35612 FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
35791
FVMAVRSVAQTWYSSLRPGTITSWQKLKD+LLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
Sbjct 181 FVMAVRSVAQTWYSSLRPGTITSWQKLKDMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
240
Query 35792 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
35971
AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGP+AQYFARKPPQTLEKLLQKMDEYIRAD
Sbjct 241 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRAD
300
Query 35972 NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDDKGSQQQRPqyssqasgqqqs
36151
NDFRQRREEAFRFSEMTRGFGGR YPRHVRSIH+STQNDDKGSQQ RPQ SSQASGQQQ+
Sbjct 301 NDFRQRREEAFRFSEMTRGFGGRSYPRHVRSIHNSTQNDDKGSQQNRPQCSSQASGQQQT
360
Query 36152 sfrppsprgrgargfggrfgDQPRRIFCLFCGENKGHTTRMCHVTiqkqkeiaeaaaqqa
36331
FRPP+PRGRGARGFGGRFGDQPR++FCLFCGE+KGHTTR CH+TIQKQKEIAEAA+QQA
Sbjct 361 FFRPPAPRGRGARGFGGRFGDQPRKLFCLFCGESKGHTTRTCHITIQKQKEIAEAASQQA
420
Query 36332 qPKQVMHTASYHSPYIPEYVGNHpavsvasasqpqaswqqpppppplqqgqqpegsqYTP
36511
QPKQVMHTASYH PYIP+Y+ NHPA SVASASQPQASWQQPPPPPPLQQGQQPEGSQY P
Sbjct 421 QPKQVMHTASYHPPYIPQYIDNHPAASVASASQPQASWQQPPPPPPLQQGQQPEGSQYAP
480
Query 36512 HQRDFREQSEARTVNSTVPESKHIY 36586
HQRDFREQSEARTVNSTVPESKHIY
Sbjct 481 HQRDFREQSEARTVNSTVPESKHIY 505
Score =
148 bits (374), Expect = 7e-37, Method: Compositional matrix

adjust.
Identities = 87/294 (30%), Positives = 154/294 (52%), Gaps = 39/294 (13%)
Frame = +2
Query 144566 QLRALHIKNRNLQKQKE----ILEAKRQRVSAQAKVRQMIRDEEKR---ARELEQEIALM
144724
++R + + ++ +Q++KE + E +RQ A +VR + DE+ R ++L QE
Sbjct 49 EIRDMEMLHQQVQRKKEKMARLAELQRQIDEASEEVRHLTHDEQNRRPQQKDLHQEGFFN
108
Query 144725 QHEGQHDLQHGPPLQQRAPAGDLFIPQRGPFIPHAAAFQGINYL-DERSPLAPQLQVSPW
144901
+ + + HG N++ D+ SPL+ +LQ +PW
Sbjct 109 EDDWYDNFHHG------------------------------NFVFDDASPLSAELQATPW
138
Query 144902 PANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPP
145081
P +++ ++G++DP ++MSY+ ++S GG+ A MAKSF++A+ TWY+ L P
Sbjct 139 PPSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKSFVMAVRSVAQTWYSSLRP
198
Query 145082 LSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDD
145261
+I SW+ L+D L +FQG+Q L C +E L+ Y R+FL L++Q P+V +
Sbjct 199 GTITSWQKLKDMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPN
258
Query 145262 QIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSE-ELHQHKVESQR
145420
+I I I GLR + PP+ L++L Q ++Y+R++ + Q + E+ R
Sbjct 259 EIVIEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRADNDFRQRREEAFR 312
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix
adjust.
Identities = 53/174 (30%), Positives = 90/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query 62061 AALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALS
61882
+ L+ L+A W ++P Q +DG S+P +FL Y +++ GG+ AVMA F +A+
Sbjct 127 SPLSAELQATPWPPSYKPPQLPMFDGHSDPKQFLMSYEATVSSYGGNAAVMAKSFVMAVR
186
Query 61881 KPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAH-LHAVRQEPRETLRAFISY

61705
Sbjct 187
245
A+TW +L PG+I SW++L ++F +Q V A L Q+ E L+A++
SVAQTWYSSLRPGTITSWQKLKDMLLTSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVRR
Query 61704 FTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARA 61543
F ++R P + + +I A +G+R + A +T+ L D+ RA
Sbjct 246 FLRLRAQAPTVPNEIVIEAMIKGLRPGPAAQYFARKPPQTLEKLLQKMDEYIRA 299
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix
adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (1%)
Frame = +1
Query 119485 YSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLV
119664
+ G + P+ +L Y G + ++ ++ + + A+ L PG I++W L
Sbjct 150 FDGHSDPKQFLMSYEATVSSYG-GNAAVMAKSFVMAVRSVAQTWYSSLRPGTITSWQKLK
208
Query 119665 QAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG
119844
+FQG +P ++ L C Q E L+ Y+RRF + R + P V + VI A + G
Sbjct 209 DMLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKG
268
Query 119845 TTCRDLVSKLGRKTPTRVSELM 119910
RK P + +L+
Sbjct 269 LRPGPAAQYFARKPPQTLEKLL 290
>ref|NP_001183750.1| uncharacterized protein LOC100502343 [Zea mays]
gb|ACR38223.1| unknown [Zea mays]
Length=493
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 347/492 (71%), Positives = 413/492 (84%), Gaps = 1/492 (0%)
Frame = -2
Query 82145 MHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGL
81966
M +ELNNF RNEVW LV RP N NV+GTKWVF NK ++ GVV RNKARL+A+GY+Q+EGL
Sbjct 1 MQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFHNKQDEHGVVTRNKARLMAKGYSQVEGL
59

Query 81965 DFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKR
81786
DFGET+APVARLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQP FED +
Sbjct 60 DFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPSSFEDSEY
119
Query 81785 PNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVD
81606
PN+V+KL KALYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVD
Sbjct 120 PNYVYKLCKALYGLKQAPRAWYECLRDFLITNGFKVGKADPTLFTKTLENDLFVCQIYVD
179
Query 81605 DIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKK
81426
+IIFG+TN+ CEEF ++M+++FEMS++GEL +FLG Q+KQL++G FISQ+KY++D+L K
Sbjct 180 NIIFGTTNESTCEEFSRIMTQKFEMSVMGELKYFLGFQVKQLQEGTFISQTKYIQDILNK
239
Query 81425 FGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARF
81246
FG+++AKPIKTPM TNGHLDLD GG VDQK+YRS+I SLLY+ ASRPD+M SVCMCARF
Sbjct 240 FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIDSLLYLCASRPDIMLSVCMCARF
299
Query 81245 QASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQ
81066
Q P+E HL+A K+ILRYL YTP GLWYP+G+ F+LIGY D+D+AGCK++RKSTSG CQ
Sbjct 300 QVDPKEAHLRAVKQILRYLVYTPKFGLWYPQGSTFDLIGYLDADWAGCKINRKSTSGTCQ
359
Query 81065 FLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNE
80886
FLGRSLVSW+SKKQNSVALSTAEAEYI AG+CCAQLLWM+QTL DY VPL+CDNE
Sbjct 360 FLGRSLVSWASKKQNSVALSTAEAEYIVAGHCCAQLLWMRQTLSDYGYKLTKVPLLCDNE
419
Query 80885 SAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCS
80706
SA+++A NPV+HSRT HI IR+HFLRDH KGDI I I + +QLADIFTKPLDE F
Sbjct 420 SAIRMADNPVEHSRTTHIVIRYHFLRDHQQKGDIEIAYINSKEQLADIFTKPLDEQTFNK
479
Query 80705 LRSEMNVIDISN 80670
LR E+N++D N
Sbjct 480 LRHELNILDSRN 491

Score = 608 bits (1567), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 307/469 (65%), Positives = 362/469 (77%), Gaps = 5/469 (1%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRCRNQVCV--PQQKRRVWSGDKEQRSACGKRLCPSHRFGL**
141603
+NF RNEVW LVP P Q + Q + V + +K + A G FG
Sbjct 6 NNFTRNEVWHLVPRPNQNVVGTKWVFHNKQDEHGVVTRNKARLMAKGYSQVEGLDFGE--
63
Query 141604 DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHV
141783
++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ +FE+ YPN+V
Sbjct 64 TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPSSFEDSEYPNYV
123
Query 141784 YKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIF
141963
YKL KALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD+IIF
Sbjct 124 YKLCKALYGLKQAPRAWYECLRDFLITNGFKVGKADPTLFTKTLENDLFVCQIYVDNIIF
183
Query 141964 GSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIK
142143
G+TN+ +CEEFSR+M QK+EMS+MGEL YFL FQVKQL++ TFISQTKY QDIL F +K
Sbjct 184 GTTNESTCEEFSRIMTQKFEMSVMGELKYFLGFQVKQLQEGTFISQTKYIQDILNKFGMK
243
Query 142144 DAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSDA
142323
DAKPIKT MGTNGHLDLD GGKSVDQK+ RSMI SLLYL SR I+LSVCMCARFQ D
Sbjct 244 DAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIDSLLYLCASRPDIMLSVCMCARFQVDP
303
Query 142324 KECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGR
142503
KE HLR VKQILRYLV T F LWYP+GSTFDL+GY D D+ K++RKSTS TC FLGR
Sbjct 304 KEAHLRAVKQILRYLVYTPKFGLWYPQGSTFDLIGYLDADWAGCKINRKSTSGTCQFLGR
363
Query 142504 SLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNKSAIR
142683
SLVSW+SK+QN VALST +A+YI+A H QLL MRQTL D+G L+KVPLLCDN+SAIR

Sbjct 364
423
SLVSWASKKQNSVALSTAEAEYIVAGHCCAQLLWMRQTLSDYGYKLTKVPLLCDNESAIR
Query 142684 LVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL 142827
+ DNP+EHSRT HI I++HFLRDHQQ+ DIEI ++++ QL DIF+ L
Sbjct 424 MADNPVEHSRTTHIVIRYHFLRDHQQKGDIEIAYINSKEQLADIFTKPL 472
>gb|ACN33468.1| unknown [Zea mays]
Length=504
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 448/505 (89%), Positives = 483/505 (96%), Gaps = 1/505 (0%)
Frame = +2
Query 35072 MPPKKASAPGAGTLQPLDPNQDVLSLREARSQKRKATSPTPPEDDLDqeiqnleilqqqv
35251
MPPKKASA GA LQPLDPNQ+ LSLREARSQKRKATSPTP EDDLDQEI+N+E+L QQV
Sbjct 1 MPPKKASATGAAALQPLDPNQESLSLREARSQKRKATSPTPQEDDLDQEIRNMEMLHQQV
60
Query 35252 qRKKEKMARLAELQRQIDEASEEVRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGN
35431
QRKKEKMARLA+LQRQIDEASEEVRHLAQDEQ+RRPQH++ HQEGF NEDDWY++FHHGN
Sbjct 61 QRKKEKMARLADLQRQIDEASEEVRHLAQDEQNRRPQHREHHQEGFFNEDDWYEDFHHGN
120
Query 35432 FVFDDASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKS
35611
F FDDASPLSAELQATPWPPSYKPPQLP++DGHSDPKQFLMSYEAT+SSYGGN +VMAKS
Sbjct 121 FAFDDASPLSAELQATPWPPSYKPPQLPMYDGHSDPKQFLMSYEATISSYGGNTAVMAKS
180
Query 35612 FVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQ
35791
FVMAV++VAQTWYSSLRPGTITSW+KLKD+L+TSFQGFQTKPVTAQALFQCTQDHEEYLQ
Sbjct 181 FVMAVKNVAQTWYSSLRPGTITSWKKLKDMLITSFQGFQTKPVTAQALFQCTQDHEEYLQ
240
Query 35792 AYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAD
35971
AYV+RFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRA+
Sbjct 241 AYVQRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAN
300

Query 35972 NDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDDKGSQQQRPqyssqasgqqqs
36151
NDFRQRREEA+RFSE+ RGFGGR +PRHVRSIH STQNDD+GSQQQRPQYSSQASGQQQS
Sbjct 301 NDFRQRREEAYRFSEIARGFGGRIHPRHVRSIH-STQNDDRGSQQQRPQYSSQASGQQQS
359
Query 36152 sfrppsprgrgargfggrfgDQPRRIFCLFCGENKGHTTRMCHVTiqkqkeiaeaaaqqa
36331
PP+PRGRGARGFGGRFGDQPR+I+CLFCGE+KGHTTRMCHVTIQKQKEIAEAAAQQ+
Sbjct 360 YPWPPAPRGRGARGFGGRFGDQPRKIYCLFCGEDKGHTTRMCHVTIQKQKEIAEAAAQQS
419
Query 36332 qPKQVMHTASYHSPYIPEYVGNHpavsvasasqpqaswqqpppppplqqgqqpegsqYTP
36511
Q KQVMHTASYHSPYI EYV NHPA SVASASQPQASWQQPPPPPP+Q+GQQPEGSQ+T
Sbjct 420 QSKQVMHTASYHSPYILEYVDNHPATSVASASQPQASWQQPPPPPPMQRGQQPEGSQHTQ
479
Query 36512 HQRDFREQSEARTVNSTVPESKHIY 36586
HQRDFRE+ EARTVNST+PESKHIY
Sbjct 480 HQRDFREEFEARTVNSTMPESKHIY 504
Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix
adjust.
Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 39/294 (13%)
Frame = +2
Query 144566 QLRALHIKNRNLQKQKE----ILEAKRQRVSAQAKVRQMIRDEEKRA---RELEQEIALM
144724
++R + + ++ +Q++KE + + +RQ A +VR + +DE+ R RE QE
Sbjct 49 EIRNMEMLHQQVQRKKEKMARLADLQRQIDEASEEVRHLAQDEQNRRPQHREHHQEGFFN
108
Query 144725 QHEGQHDLQHGPPLQQRAPAGDLFIPQRGPFIPHAAAFQGINY-LDERSPLAPQLQVSPW
144901
+ + D HG N+ D+ SPL+ +LQ +PW
Sbjct 109 EDDWYEDFHHG------------------------------NFAFDDASPLSAELQATPW
138
Query 144902 PANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPP
145081
P +++ Y+G++DP ++MSY+ I+S GG+ A MAKSF++A++ TWY+ L P
Sbjct 139 PPSYKPPQLPMYDGHSDPKQFLMSYEATISSYGGNTAVMAKSFVMAVKNVAQTWYSSLRP
198

Query 145082 LSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDD
145261
+I SWK L+D + +FQG+Q L C +E L+ Y ++FL L++Q P+V +
Sbjct 199 GTITSWKKLKDMLITSFQGFQTKPVTAQALFQCTQDHEEYLQAYVQRFLRLRAQAPTVPN
258
Query 145262 QIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRS-EELHQHKVESQR
145420
+I I I GLR + PP+ L++L Q ++Y+R+ + Q + E+ R
Sbjct 259 EIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRANNDFRQRREEAYR 312
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix
adjust.
Identities = 56/176 (32%), Positives = 91/176 (52%), Gaps = 2/176 (1%)
Frame = -1
Query 62064 CAALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVAL
61885
+ L+ L+A W ++P Q YDG S+P +FL Y I++ GG+TAVMA F +A+
Sbjct 126 ASPLSAELQATPWPPSYKPPQLPMYDGHSDPKQFLMSYEATISSYGGNTAVMAKSFVMAV
185
Query 61884 SKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAH-LHAVRQEPRETLRAFIS
61708
A+TW +L PG+I SW++L ++F +Q V A L Q+ E L+A++
Sbjct 186 KNVAQTWYSSLRPGTITSWKKLKDMLITSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVQ
244
Query 61707 YFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARAT
61540
F ++R P + + +I A +G+R + A +T+ L D+ RA
Sbjct 245 RFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRAN 300
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix
adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (1%)
Frame = +1
Query 119485 YSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLV
119664
Y G + P+ +L Y G + ++ ++ + + A+ L PG I++W L
Sbjct 150 YDGHSDPKQFLMSYEATISSYG-GNTAVMAKSFVMAVKNVAQTWYSSLRPGTITSWKKLK
208

Query 119665 QAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG
119844
+FQG +P ++ L C Q E L+ Y++RF + R + P V + VI A + G
Sbjct 209 DMLITSFQGFQTKPVTAQALFQCTQDHEEYLQAYVQRFLRLRAQAPTVPNEIVIEAMIKG
268
Query 119845 TTCRDLVSKLGRKTPTRVSELM 119910
RK P + +L+
Sbjct 269 LRPGPSAQYFARKPPQTLEKLL 290
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix
adjust.
Identities = 19/49 (39%), Positives = 24/49 (49%), Gaps = 1/49 (2%)
Frame = +2
Query 145631 FYCLFHGEDCAHPTRDCPETKATKDRMSWAQPADNQ*V-VAHTYQHHHP 145774
YCLF GED H TR C T + ++ A +Q V HT +H P
Sbjct 385 IYCLFCGEDKGHTTRMCHVTIQKQKEIAEAAAQQSQSKQVMHTASYHSP 433
>gb|AAD09019.1| copia protein [Zea mays]
Length=447
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 330/448 (74%), Positives = 381/448 (85%), Gaps = 1/448 (0%)
Frame = -2
Query 82145 MHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGL
81966
M +ELNNF RNEVW LV RPK NV+GTKWVFRNK N+ GVV RNKARLVA+GY Q+ GL
Sbjct 1 MQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQNEHGVVTRNKARLVAKGYAQVAGL
59
Query 81965 DFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKR
81786
DF ETFAPVARLE+IRILLAYA H+ +LYQMDVKSAFLNG I E VYVEQPPGFED +
Sbjct 60 DFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERF
119
Query 81785 PNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVD
81606
P+HV KLSKALYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK DLFVCQIYVD
Sbjct 120 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANTFKVGKADPTLFTKTCDGDLFVCQIYVD
179

Query 81605 DIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKK
81426
DIIFGSTN CEEF ++M+++FEMSM+GEL++FLG Q+KQLKD FI+Q+KY +D+LK+
Sbjct 180 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDDTFITQTKYTQDLLKR
239
Query 81425 FGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARF
81246
FG+++AKP KTPM TNGH DL++GG VDQK YRS+IGSLLY+ ASRPD+M SVCMCARF
Sbjct 240 FGMKDAKPAKTPMGTNGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
299
Query 81245 QASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQ
81066
Q+ P+E HL A KRILRYL TP G+WYPKG+ F+LIGY DSDYAGCKVDRKSTSG CQ
Sbjct 300 QSDPKECHLVAVKRILRYLVTTPCFGIWYPKGSNFDLIGYLDSDYAGCKVDRKSTSGTCQ
359
Query 81065 FLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLMCDNE
80886
FLGRSLVSW+SKKQ SVALSTAEAEY++AG CCAQLLWM+QTL D+ VPL+CDNE
Sbjct 360 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
419
Query 80885 SAVKLATNPVQHSRTKHIDIRHHFLRDH 80802
SA+++A NP++HSRTKHIDIRHHFLRDH
Sbjct 420 SAIRIAENPIEHSRTKHIDIRHHFLRDH 447
Score = 623 bits (1606), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 316/448 (71%), Positives = 357/448 (80%), Gaps = 12/448 (3%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NFKRNEVW+LVP PKQ RN+ Q + V + +K + A G F
Sbjct 6 NNFKRNEVWTLVPRPKQNVVGTKWVFRNK----QNEHGVVTRNKARLVAKGYAQVAGLDF
61
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
F+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++R+
Sbjct 62 EE--TFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERF
119

Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
P+HV KLSKALY LK+AP WYECL+DFLI+N+FKV K TLFTKTCDGDLFVCQI VD
Sbjct 120 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANTFKVGKADPTLFTKTCDGDLFVCQIYVD
179
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL FQVKQLKDDTFI+QTKYTQD+LK
Sbjct 180 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDDTFITQTKYTQDLLKR
239
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARF
142311
F +KDAKP KT MGTNGH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARF
Sbjct 240 FGMKDAKPAKTPMGTNGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF
299
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
QSD KECHL VK+ILRYLV T F +WYPKGS FDL+GY D DY K+DRKSTS TC
Sbjct 300 QSDPKECHLVAVKRILRYLVTTPCFGIWYPKGSNFDLIGYLDSDYAGCKVDRKSTSGTCQ
359
Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNK
142671
FLGRSLVSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+
Sbjct 360 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE
419
Query 142672 SAIRLVDNPIEHSRTKHIDIQHHFLRDH 142755
SAIR+ +NPIEHSRTKHIDI+HHFLRDH
Sbjct 420 SAIRIAENPIEHSRTKHIDIRHHFLRDH 447
>gb|AAP94592.1| retrotransposon Opie-2 [Zea mays]
Length=1512
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 352/510 (69%), Positives = 414/510 (81%), Gaps = 20/510 (4%)
Frame = -2
Query 82196 EPNRVDEALLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVV
82017

Sbjct 1022
1061
+P RV+EALLD+DWV AM +ELNNF RNEVW L E GVV
QPFRVEEALLDLDWVLAMQEELNNFKRNEVWSLDEH--------------------GVVT
Query 82016 RNKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKI
81837
RNKARLVA+GY Q+ GLDF ETFAPVARLE+IRILLAYA H+ +LYQMDVKSAFLNG I
Sbjct 1062 RNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPI
1121
Query 81836 SELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTL
81657
E VYVEQPPGFED + P+HV KL+KALYGLKQAPRAWYE LRDFL++ FK+GK D TL
Sbjct 1122 KEEVYVEQPPGFEDERYPDHVCKLAKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTL
1181
Query 81656 FTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLK
81477
FTK DLFVCQI+VDDIIFGSTN CEEF ++M+++FEMSM+G+L++FLG Q+KQLK
Sbjct 1182 FTKTCNGDLFVCQIFVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGKLNYFLGFQVKQLK
1241
Query 81476 DGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYI
81297
DG FISQ KY +D+LK+FG+++AKP KTPM T+GH DL++GG VDQK YRS+IGSLLY+
Sbjct 1242 DGTFISQMKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYL
1301
Query 81296 TASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDS
81117
ASRPD+M SVCMCARFQ+ P+E HL A KRILRYL TP GLWYPKG+ F+L+GYSDS
Sbjct 1302 CASRPDIMLSVCMCARFQSEPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDS
1361
Query 81116 DYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTL
80937
D AGCKVDRKSTSG CQFLGRSLVSW+SKKQ SVALSTAEAEY++AG CCAQLLWM+QTL
Sbjct 1362 DNAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTL
1421
Query 80936 LDYEIIFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDD
80757
D+ VPL+CDNESA+++A NPV+H+RTKHIDIRHHFLRDH KGDI ++ + T++
Sbjct 1422 RDFGYNLSKVPLLCDNESAIRMAENPVEHNRTKHIDIRHHFLRDHQQKGDIEVFHVSTEN
1481

Query 80756 QLADIFTKPLDETRFCSLRSEMNVIDISNV 80667
QLADIFTKPLDE FC LRSE+NV+D N+
Sbjct 1482 QLADIFTKPLDEKTFCRLRSELNVLDSRNL 1511
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 320/467 (69%), Positives = 368/467 (79%), Gaps = 20/467 (4%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRCRNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRFGL**DF
141609
+NFKRNEVWSL H R + ++ V + +V D E+ F
Sbjct 1044 NNFKRNEVWSLDEHGVVTRNKARL-VAKGYAQVAGLDFEET------------------F
1084
Query 141610 SPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVYK
141789
+PVARLES ILLAYA H+SF+L+QMDVK+AFLNGPIKEEVYVE+ P FE++RYP+HV K
Sbjct 1085 APVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCK
1144
Query 141790 LSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFGS
141969
L+KALY LK+AP WYECL+DFLI+N+FKV K TLFTKTC+GDLFVCQI VDDIIFGS
Sbjct 1145 LAKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCNGDLFVCQIFVDDIIFGS
1204
Query 141970 TNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKDA
142149
TNQKSCEEFSR+M QK+EMSMMG+LNYFL FQVKQLKD TFISQ KYTQD+LK F +KDA
Sbjct 1205 TNQKSCEEFSRVMTQKFEMSMMGKLNYFLGFQVKQLKDGTFISQMKYTQDLLKRFGMKDA
1264
Query 142150 KPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSDAKE
142329
KP KT MGT+GH DL+ GGKSVDQK RSMIGSLLYL SR I+LSVCMCARFQS+ KE
Sbjct 1265 KPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSEPKE
1324
Query 142330 CHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGRSL
142509
CHL VK+ILRYLV T F LWYPKGSTFDLVGY D D K+DRKSTS TC FLGRSL
Sbjct 1325 CHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDNAGCKVDRKSTSGTCQFLGRSL
1384

Query 142510 VSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLLCDNKSAIRLV
142689
VSW+SK+Q VALST +A+Y+ A QLL MRQTLRDFG NLSKVPLLCDN+SAIR+
Sbjct 1385 VSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMA
1444
Query 142690 DNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL 142827
+NP+EH+RTKHIDI+HHFLRDHQQ+ DIE+ HVST +QL DIF+ L
Sbjct 1445 ENPVEHNRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPL 1491
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix
adjust.
Identities = 55/190 (29%), Positives = 85/190 (45%), Gaps = 3/190 (2%)
Frame = -1
Query 74004 VHIGKPPHFMETIMIIGK*ECQCILEQWVEKIWPIVRDGFVVLKEDEPSVSDNENILTND
73825
+ +GKPPHF + + L IW IV G D P V NE I N
Sbjct 96 IPLGKPPHFDGEDYGFWSHKMRTHLFSLHPSIWEIVESGMKFDSSDSP-VFINEQIHKNA
154
Query 73824 QAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHEGTTIVKSAKLYVCKGKFEQFIMKE
73645
QA V +L +E++++ L A +IW L HEG + K+ + +G+ +F M
Sbjct 155 QATTVLLASLCRDEYHKVSGLDNAKQIWDTLKISHEGNDVTLLTKMELVEGELGRFAMIR
214
Query 73644 DESVSDMFNRLNEIVNELKGLGFNV-PDVDFTHKFLRSLPEKYETIVTMLVRSDLSTT-S
73471
E + +NRL ++N+++ G D D LRS +V + + T S
Sbjct 215 GEEPTQTYNRLKTLINKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRYTKMS
274
Query 73470 PTEVLGEILT 73441
P EVLG+ ++
Sbjct 275 PEEVLGKFVS 284
Score = 38.5 bits (88), Expect(2) = 6e-04, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML + +W

Sbjct 822 EEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFW 867
Score = 29.6 bits (65), Expect(2) = 6e-04, Method: Compositional matrix
adjust.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K E K + A+N+ + K+K
Sbjct 761 LVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELKVK 802
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix
adjust.
Identities = 30/79 (38%), Positives = 43/79 (54%), Gaps = 10/79 (13%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL--INAMKTMAIGEIKPKEDDDENSVVVIPSSST
82443
S DV FDETNGS E D + A++TMAIGE++P+E D+ + PSSST
Sbjct 956 SSDVVFDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQ----PSSST
1011
Query 82442 I----NEEDHQSQQLNETI 82398
++D Q ++ E +
Sbjct 1012 TVHPPTQDDEQPFRVEEAL 1030
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix
adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (4%)
Frame = +2
Query 129248 PFAVWGLDLVSPLQK-APGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVA--FFTNIIHR
129418
P + +DL P+ + GG + LV +D FS++ V L Q F +
Sbjct 737 PLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNE
796
Query 129419 FGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVERANGMIL
129577
F + I ++NG++F + +F E+ I+ +++ P NG VER N ++
Sbjct 797 FELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLI 850

Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix
adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query 149233 LPVSESRSSSQIDNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIK
149412
L V + RS DNG +F + +F G K F++ Y P+ NGVVER N + +
Sbjct 799 LKVKKIRS----DNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
854
Query 149413 KRLLDDKKGKWADQLPEVVW--ALNTTECRA 149499
L + K PE W A+NT C A
Sbjct 855 TMLGEFKT-------PECFWSEAVNTA-CHA 877
>gb|ACF86871.1| unknown [Zea mays]
Length=676
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 335/341 (98%), Positives = 336/341 (99%), Gaps = 3/341 (1%)
Frame = +2
Query 30266 TLQQALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG
30445
T QALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG
Sbjct 249 TYYQALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG
308
Query 30446 ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
30625
ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
Sbjct 309 ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
368
Query 30626 HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADlnsrvnllssr
30805
HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADLNSRVNLLSSR
Sbjct 369 HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADLNSRVNLLSSR
428
Query 30806 sDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV
30985
SDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV
Sbjct 429 SDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV

488
Query 30986 STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
31165
STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
Sbjct 489 STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
548
Query 31166 NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREK---GVY 31279
NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREK G+Y
Sbjct 549 NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREKEKQGLY 589
Score = 231 bits (589), Expect = 8e-63, Method: Compositional matrix
adjust.
Identities = 125/146 (86%), Positives = 130/146 (89%), Gaps = 2/146 (1%)
Frame = +2
Query 28943 VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYEllssllrllalP
29122
VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYELLSSLLRLLALP
Sbjct 135 VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYELLSSLLRLLALP
194
Query 29123 RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQVI
29302
RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQ +
Sbjct 195 RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQAL
254
Query 29303 LFIYL--WSC*LVIFFLICSREPHDE 29374
I L W L+ + + C E H +
Sbjct 255 KIISLCGWEPRLLPYAVDCGTEFHSD 280
Score = 142 bits (358), Expect(2) = 3e-44, Method: Compositional matrix
adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Frame = +1
Query 31711 EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
31890
EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
Sbjct 584 EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
643

Query 31891 SLLDE 31905
SLLDE
Sbjct 644 SLLDE 648
Score = 62.0 bits (149), Expect(2) = 3e-44, Method: Compositional matrix
adjust.
Identities = 28/29 (97%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
Frame = +2
Query 31976 QEDDPLTSVRKLFMTPPPKRRRIQQSEKS 32062
+EDDPLTSVRKLFMTPPPKRRRIQQSEKS
Sbjct 648 EEDDPLTSVRKLFMTPPPKRRRIQQSEKS 676
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix
adjust.
Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Frame = +3
Query 28023 SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV 28157
SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV
Sbjct 50 SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV 94
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix
adjust.
Identities = 41/42 (98%), Positives = 42/42 (100%), Gaps = 0/42 (0%)
Frame = +2
Query 28604 QVISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ 28729
+VISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ
Sbjct 93 KVISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ 134
>ref|NP_001141693.1| uncharacterized protein LOC100273822 [Zea mays]
gb|ACL52613.1| unknown [Zea mays]
gb|ACN33309.1| unknown [Zea mays]
Length=698
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 335/341 (98%), Positives = 336/341 (99%), Gaps = 3/341 (1%)
Frame = +2
Query 30266 TLQQALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG

30445
Sbjct 271
330
T QALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG
TYYQALKIISLCGWEPRLLPYAVDCGTEFHSDANSTSKLAQPEQSSKTMEDRVILYSPDG
Query 30446 ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
30625
ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
Sbjct 331 ARPSVDVNQEDQHYDPLSVVLDCQFCGACVALWPFSLVQRPLQLFKLISDSNRQDDQDNG
390
Query 30626 HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADlnsrvnllssr
30805
HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADLNSRVNLLSSR
Sbjct 391 HANIVSGVGHSKDANISFNFTIAGGPPPTRQSFRPKVSFPVVSRHLKADLNSRVNLLSSR
450
Query 30806 sDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV
30985
SDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV
Sbjct 451 SDCYMVPVASHASGSMKRKRSTDEPHLLEGDADDVDTSTIGANHDQPGENSEKSISNLVV
510
Query 30986 STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
31165
STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
Sbjct 511 STEQKQDGSHSNAAKDTELDEASNETQPETGSPLRKSITSTYADADQHGLEPRFCSVQGT
570
Query 31166 NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREK---GVY 31279
NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREK G+Y
Sbjct 571 NEEPSGGVTLTEMHANNSRSTEVSTITESLVNREKEKQGLY 611
Score = 231 bits (589), Expect = 1e-62, Method: Compositional matrix
adjust.
Identities = 125/146 (86%), Positives = 130/146 (89%), Gaps = 2/146 (1%)
Frame = +2
Query 28943 VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYEllssllrllalP
29122
VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYELLSSLLRLLALP
Sbjct 157 VEKAAAVFSLKLDSGHKLLCPWIDNICDESLALFPPTPPPVLVGNYYELLSSLLRLLALP
216
Query 29123 RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQVI

29302
Sbjct 217
276
RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQ +
RISCSSLETMKKRNPQLEQFLSEPFSSSVVLKGGLMLTEDSTIKDLDDAFQDADTYYQAL
Query 29303 LFIYL--WSC*LVIFFLICSREPHDE 29374
I L W L+ + + C E H +
Sbjct 277 KIISLCGWEPRLLPYAVDCGTEFHSD 302
Score = 142 bits (358), Expect(2) = 3e-44, Method: Compositional matrix
adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Frame = +1
Query 31711 EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
31890
EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
Sbjct 606 EKQGLYDRMNEFDPIKQHRTFCPWTSPDYGEPLPGWRLTLSALLAGDKRSDGDLQVDIQT
665
Query 31891 SLLDE 31905
SLLDE
Sbjct 666 SLLDE 670
Score = 62.0 bits (149), Expect(2) = 3e-44, Method: Compositional matrix
adjust.
Identities = 28/29 (97%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
Frame = +2
Query 31976 QEDDPLTSVRKLFMTPPPKRRRIQQSEKS 32062
+EDDPLTSVRKLFMTPPPKRRRIQQSEKS
Sbjct 670 EEDDPLTSVRKLFMTPPPKRRRIQQSEKS 698
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix
adjust.
Identities = 45/45 (100%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
Frame = +3
Query 28023 SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV 28157
SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV
Sbjct 72 SRLPHQMLAMAAISPPPPCRPWDRADLMRRLGSFKAMTWFAKPKV 116

Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix
adjust.
Identities = 41/42 (98%), Positives = 42/42 (100%), Gaps = 0/42 (0%)
Frame = +2
Query 28604 QVISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ 28729
+VISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ
Sbjct 115 KVISPVNCARRGWTNIEPDVITCEACGARLLFSTPSSWTTQQ 156
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix
adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
Frame = +3
Query 27753 SERRLQKAMDKLYHF 27797
SERRLQKAMDKLYHF
Sbjct 15 SERRLQKAMDKLYHF 29
>gb|AAP94585.1| putative gag-pol precursor [Zea mays]
Length=1833
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 343/633 (54%), Positives = 423/633 (67%), Gaps = 45/633 (7%)
Frame = +2
Query 126836 EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQPLRRFDEEKRRGIGE
127015
E+ LV FL N DVFAW P+DMPG+PR++AEH L + A P++Q LRRF +KR I
Sbjct 852 ESALVQFLQDNRDVFAWQPADMPGVPRELAEHKLKVYPQARPIRQKLRRFTPDKREAIRA
911
Query 127016 EIHKLMAAGFIKEVFHPEWLANPVLVRKKGG-KWRMCVDYTGLNKACPKVPYPLPRIDQI
127192
E+ +L+AAGFI+EV HPEWLANPVLV KK WRMCVDYT LNK CPK P+ LPRIDQ+
Sbjct 912 ELARLVAAGFIREVLHPEWLANPVLVLKKNKVDWRMCVDYTDLNKHCPKDPFGLPRIDQV
971
Query 127193 VDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPFGLRNAGATY*RC
127372
VDSTAGC LSFLD YSGYHQI + + D+ T+FITPFG +CY +M FGL+NAGATY R
Sbjct 972 VDSTAGCSVLSFLDCYSGYHQISLAKEDEEKTAFITPFGAFCYTSMSFGLKNAGATYQRA
1031

Query 127373 MNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKLNPEKCVFGVPRG
127552
+ +H G+ VEAYVDD+V+KT + + + DL+ F L+ KLNPEKCVFGVP G
Sbjct 1032 IQTCLADHWGKRVEAYVDDVVIKTENSENFIEDLQLVFNSLRRYRWKLNPEKCVFGVPAG
1091
Query 127553 MLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFISRFGERGLPLYR
127732
LLGFIVS +GIEANP+KI AI M + K VQR+ GC+AALSRFISR GE+GLP Y+
Sbjct 1092 KLLGFIVSHQGIEANPDKIEAIMKMEAPRSQKKVQRLTGCMAALSRFISRLGEKGLPFYK
1151
Query 127733 LLRKAECFT*TPEAEEALGNLKALLTNAPILVPP------AAGEALLIYVVATTQVVSAA
127894
LL+K + F T EA+EAL LK LT P+L PP
E LL+Y+ TT VV
Sbjct 1152 LLKKVDKFQWTSEAQEALDALKKFLTTPPVLKPPRRATPTQPAEDLLLYISCTTHVV---
1208
Query 127895 IVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHPVIV
128074
QKLLYAV+LT RKLRHYF+ H VIV
Sbjct 1209 -----------------------------------QKLLYAVLLTARKLRHYFDDHKVIV
1233
Query 128075 VSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT*LPIAP
128254
V+ FP+G+I+ +EA GRIAK A E+ I F PR AIK+Q L DFV+EW + +P P
Sbjct 1234 VTGFPIGDILHNKEAIGRIAKWACELGSHDIEFRPRTAIKTQALVDFVSEWTEQQVPDNP
1293
Query 128255 IQPELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEALVNGLHIA
128434
E+W M+FDGSL GAGAG+LF +P G+HL+Y L+L FPASNN A+YEAL++GL+IA
Sbjct 1294 ETTEVWRMYFDGSLKLQGAGAGILFTAPGGEHLKYALQLLFPASNNAAEYEALIHGLNIA
1353
Query 128435 IELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHIARRYNE
128614
I LGV+RL GDS +VI Q+ K C M YC VR+LEDKF GLE +HI R N
Sbjct 1354 ISLGVKRLMVYGDSLVVISQINKEWDCSSDSMGKYCTAVRKLEDKFEGLEFHHIERDRNT
1413
Query 128615 TADELAKIASGRTTVPPDVFSRDLHQPSVKTDN 128713
AD L+K+ SGRT VPP VF +++ QPS+ +
Sbjct 1414 AADILSKLGSGRTQVPPGVFVQEILQPSISMNQ 1446

Score = 440 bits (1131), Expect = 8e-125, Method: Compositional matrix
adjust.
Identities = 200/369 (54%), Positives = 264/369 (72%), Gaps = 1/369 (0%)
Frame = +2
Query 128975 KELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFRQGFYWPTAVADA
129154
K + R SG+L +CI + G++LL+E+H+G CG HAA R LVG FR FYWPTA DA
Sbjct 1465 KPIIKRGASGVLMKCILPSTGKQLLEEVHAGQCGVHAASRTLVGKVFRSEFYWPTAKNDA
1524
Query 129155 TRIVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQKAPGGYTHLLVAIDK
129334
+V+ C+ CQ+ ++Q H+PAQ LQTIP+TWPFA WGLD++ P +KA GGYTH+LVAIDK
Sbjct 1525 AELVQRCEACQYLSKQQHMPAQQLQTIPVTWPFACWGLDMIGPFKKAQGGYTHVLVAIDK
1584
Query 129335 FSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITNNGTQFTGRKFLDFCEDHHIRVD
129514
F+KWIE +P+ S+ S +AV F +II RFG+PNSIIT+ G+ FT +F DFCE I++
Sbjct 1585 FTKWIEFQPIASLTSAKAVEFIQSIIFRFGIPNSIITDLGSNFTSSEFFDFCEQKSIQIK
1644
Query 129515 WAIVAHPMTNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPLVVWSLRTTPSRAT-G
129691
+A VAHP NGQVERANGMIL+ L+ R+++ KF +W++ELP VVWSLRT PSRA G
Sbjct 1645 YASVAHPRANGQVERANGMILEALRKRVFDKNEKFAGKWIRELPYVVWSLRTQPSRALHG
1704
Query 129692 FTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLEEARDMALLHSVRYQQ
129871
TPFF+VYG+EA+LP DL++G PR
A R + +D LEE R A++ S RYQQ
Sbjct 1705 NTPFFMVYGSEAVLPADLKFGAPRLIFESIAEAEATRLEDIDILEEERLNAVIQSARYQQ
1764
Query 129872 SLRRYHARGVRSRDLQVGDLVLRLRQDAQGRHKLTPPLEGPFVIAKVLKPGTYKLANSQG
130051
+LRRYH + VR R +GDLVLR +GRHKL+P EGPF++A++ +PG+Y+L G
Sbjct 1765 TLRRYHDKAVRQRFFSIGDLVLRRILTGEGRHKLSPLWEGPFIVAEITRPGSYRLTRMDG
1824
Query 130052 EVYSNAWNI 130078
N+WNI
Sbjct 1825 TEVGNSWNI 1833

Score = 243 bits (620), Expect(2) = 6e-114, Method: Compositional
matrix adjust.
Identities = 147/405 (36%), Positives = 210/405 (52%), Gaps = 41/405 (10%)
Frame = +2
Query 145952 IHMITGGSSVDFETKRQKRDHYGSVNHVTLTGPVMQTKWSHVPLTFDARDVDLR-SAPHV
146128
+++I GG E KRQ++ + + V TGP +WS P+TF D L P
Sbjct 627 VNVIFGGHGSQ-ENKRQQKLNDRQI-LVATTGPPAPYRWSEHPITFTREDQWLNFDHPGK
684
Query 146129 DAMVINCSVAGWDLHKVLVDNGSQADIIFLHAFDRMGISHSLLKPSNNPLYGF-GGKGTF
146305
++++ + + KVLVD GS ++ F +G+ L S+ P +G +G +
Sbjct 685 YPLLVDPVIRESRVKKVLVDGGSSINVTFPRTLQGLGVHLKELHESDTPFFGIVPTEGEY
744
Query 146306 PVGKIELPLSFDVAPNARSEHVTFDIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPG
146485
P+G I +P++F N R+E + F++ + YNAI+GR + KF H Y+ +K+PG
Sbjct 745 PLGHIYMPVTFGTPENYRTEFLRFEVANFDCGYNAIIGRSGLAKFMAIPHYTYMILKMPG
804
Query 146486 LQGVITVYDNQQTARNIERDFVPGQRNVHCLTT*HEVTEATCPTNDEKVKAQLQSNDGMK
146665
+G+ITV + Q A C + T P+
Sbjct 805 PRGIITVRADFQGA-------------AECFRVAIQAALTTKPS----------------
835
Query 146666 TVPLDPATPKQTVVISEDLTSQDEEKLISCLSRNMDVFAWSALDLVGVNRTITEHSLSID
146845
VP A K EDLT E L+ L N DVFAW D+ GV R + EH L +
Sbjct 836 AVPATSANSKP----EEDLT---ESALVQFLQDNRDVFAWQPADMPGVPRELAEHKLKVY
888
Query 146846 PSVRPKKQRLRKMSDKKTEATKAEVHRLLEANFIEPVAYPTWLANIVMVQKKSG-KWRMC
147022
P RP +Q+LR+ + K EA +AE+ RL+ A FI V +P WLAN V+V KK+ WRMC
Sbjct 889 PQARPIRQKLRRFTPDKREAIRAELARLVAAGFIREVLHPEWLANPVLVLKKNKVDWRMC
948
Query 147023 IDFTSLNKSCPKDNFPLLRIDKIVDSAAGCEVMSLIDCFSDYHQI 147157
+D+T LNK CPKD F L RID++VDS AGC V+S +DC+S YHQI
Sbjct 949 VDYTDLNKHCPKDPFGLPRIDQVVDSTAGCSVLSFLDCYSGYHQI 993

Score = 193 bits (491), Expect(2) = 6e-114, Method: Compositional
matrix adjust.
Identities = 89/183 (49%), Positives = 124/183 (68%), Gaps = 0/183 (0%)
Frame = +3
Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
+ +ED+ T+FITPFG +C+ M GLKNAG+T+ R +T L G+ + YVDD+V+
Sbjct 995 LAKEDEEKTAFITPFGAFCYTSMSFGLKNAGATYQRAIQTCLADHWGKRVEAYVDDVVIK
1054
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
++N E+ + DL F ++R +LNPEKCVFGV GK+LG++VSH+GIEANP KI+AI+
Sbjct 1055 TENSENFIEDLQLVFNSLRRYRWKLNPEKCVFGVPAGKLLGFIVSHQGIEANPDKIEAIM
1114
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
M P+S VQ LTG +AAL+RFIS+ E+ LPF K L+ F W SE A +LK+
Sbjct 1115 KMEAPRSQKKVQRLTGCMAALSRFISRLGEKGLPFYKLLKKVDKFQWTSEAQEALDALKK
1174
Query 147702 HLS 147710
L+
Sbjct 1175 FLT 1177
Score = 160 bits (406), Expect(2) = 1e-65, Method: Compositional matrix
adjust.
Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 6/212 (3%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKK---G
149439
D G F S +F DF ++ + SV HP++NG VERANG I A++KR+ D + G
Sbjct 1622 DLGSNFTSSEFFDFCEQKSIQIKYASVAHPRANGQVERANGMILEALRKRVFDKNEKFAG
1681
Query 149440 KWADQLPEVVWALNTTECRAT-GFTPFCLLHGSESMTPQEIKHGSPRT--NTSATPDVDE
149610
KW +LP VVW+L T RA G TPF +++GSE++ P ++K G+PR + A +
Sbjct 1682 KWIRELPYVVWSLRTQPSRALHGNTPFFMVYGSEAVLPADLKFGAPRLIFESIAEAEATR
1741

Query 149611 PTSKDLIDGDRVFALQALNKYQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPK
149790
D+++ +R+ A+ +YQ + HD AV R F+ GDLVL R E R KL P
Sbjct 1742 LEDIDILEEERLNAVIQSARYQQTLRRYHDKAVRQRFFSIGDLVLRRILTGEGRHKLSPL
1801
Query 149791 WEGPFIVKSKASPSAYRLSTPTGEDLDHSWNI 149886
WEGPFIV P +YRL+ G ++ +SWNI
Sbjct 1802 WEGPFIVAEITRPGSYRLTRMDGTEVGNSWNI 1833
Score = 115 bits (287), Expect(2) = 1e-65, Method: Compositional matrix
adjust.
Identities = 58/151 (38%), Positives = 83/151 (55%), Gaps = 1/151 (1%)
Frame = +2
Query 148799 LYKKGISQPMLKCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*
148978
+ K+G S ++KC+ + G Q+L EVH+ CG H+ R L KV FYWP
Sbjct 1467 IIKRGASGVLMKCILPSTGKQLLEEVHAGQCGVHAASRTLVGKVFRSEFYWPTAKNDAAE
1526
Query 148979 VTRSCEACQKFSPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEYFT
149158
+ + CEACQ S + P+Q + I TWP WGLD++GP AQG V ++ FT
Sbjct 1527 LVQRCEACQYLSKQQHMPAQQLQTIPVTWPFACWGLDMIGPFKKAQGGYTHVLVAIDKFT
1586
Query 149159 K*IEARAVSMITSKTAQKFFWQNIVCRFRSP 149251
K IE + ++ +TS A +F Q+I+ RF P
Sbjct 1587 KWIEFQPIASLTSAKAVEFI-QSIIFRFGIP 1616
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix
adjust.
Identities = 150/479 (31%), Positives = 208/479 (43%), Gaps = 85/479 (18%)
Frame = +1
Query 119482 KYSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDL
119661
KY + P WLA Y A G +D ++ LP+ L A L HLP I +W D
Sbjct 397 KYEPKQDPGGWLAVYTTAARAAGASED-VMTAYLPIVLGQDALQWLRHLPRHCIDDWGDF
455
Query 119662 VQAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLA
119841

Sbjct 456
511
+ F NFQ +P DL+S ++ E+LR Y++RF R +P D+IG
SRRFIANFQSLSDKPAQPWDLKSIKRRGDETLRSYLKRFQTMRNRIPE----DLIGGAKP
Query 119842 GTTC--RDLVSKLGRKTPTRVSELMDIATKSASGQEAVEAIFRKDKQPQG--RQLKDVLE
120009
T RD ++ R E + A AS R P+G R L D+L+
Sbjct 512 APTAPRRDANQPPDKRWEKRPREEVHAAGPPAS---------RARGGPRGGERTLDDILD
562
Query 120010 AstqrgtkkkgkkksqakrDAADADLVTAAEYKNPRKPPGGANLFDKMLKESCPYHQGPV
120189
A CPYH+ +
Sbjct 563 A--------------------------------------------------QCPYHKD-M
571
Query 120190 KHTLEECAMLRRHFHKAG------------PPAEGGRAHDNDKKEDHKAGEFPEV-HDCF
120330
+HTL C + H G P ++E+ G FP V +
Sbjct 572 RHTLRNCQDFK---HSVGHGRPFQPLPPPPPRGGPDEPRQPHRQEEGGGGAFPRVDREVN
628
Query 120331 MIYGGQVANASARHRKQERREVCSVKVAAPVYLDWSDKPITFNQGDHPDRVPSPGKYPLV
120510
+I+GG + + R +K R++ P WS+ PITF + D PGKYPL+
Sbjct 629 VIFGGHGSQENKRQQKLNDRQILVATTGPPAPYRWSEHPITFTREDQWLNFDHPGKYPLL
688
Query 120511 VDPVIGNVRLTKVLMDGGSSLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQ
120690
VDPVI R+ KVL+DGGSS+N+ + TL L + L + PF GI+P + PL
Sbjct 689 VDPVIRESRVKKVLVDGGSSINVTFPRTLQGLGVHLKELHESDTPFFGIVPTEGEYPLGH
748
Query 120691 LDLLVCFGTPSNFRRETLTFEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNG
120867
+ + V FGTP N+R E L FEV F Y+A++GR AKFMA+P+YTY+ LKM GP G
Sbjct 749 IYMPVTFGTPENYRTEFLRFEVANFDCGYNAIIGRSGLAKFMAIPHYTYMILKMPGPRG
807
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix
adjust.
Identities = 79/205 (39%), Positives = 115/205 (56%), Gaps = 5/205 (2%)
Frame = +1

Query 147895 KKHSYAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEP
148074
+K YAV++ +RKLR YF+ KV V + +G++ N EA IAKWA +L + I F P
Sbjct 1209 QKLLYAVLLTARKLRHYFDDHKVIVVTGFPIGDILHNKEAIGRIAKWACELGSHDIEFRP
1268
Query 148075 RTTIK*QVLVDFIVDWTGPTRQQEEPSEKVWTIHCDDAWCHagagaaaiiTSPTCVKHRY
148254
RT IK Q LVDF+ +WT + +VW ++ D + GAGA + T+P +Y
Sbjct 1269 RTAIKTQALVDFVSEWTEQQVPDNPETTEVWRMYFDGSLKLQGAGAGILFTAPGGEHLKY
1328
Query 148255 VARLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDP
148434
+L F +NN AEYE +I GL +LGV +V DS V+ Q+ KE+
Sbjct 1329 ALQLLFP-----ASNNAAEYEALIHGLNIAISLGVKRLMVYGDSLVVISQINKEWDCSSD
1383
Query 148435 ALMQYLTAVRSLEIQFKGLTLQHMD 148509
++ +Y TAVR LE +F+GL H++
Sbjct 1384 SMGKYCTAVRKLEDKFEGLEFHHIE 1408
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix
adjust.
Identities = 64/138 (46%), Positives = 84/138 (61%), Gaps = 1/138 (1%)
Frame = -1
Query 61095 TTASRAAR-ETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQA
60919
T SRA TPF +VYG+EA LP ++ G+PR+ + E + ED+D ++E R A
Sbjct 1696 TQPSRALHGNTPFFMVYGSEAVLPADLKFGAPRLIFESIAEAEATRLEDIDILEEERLNA
1755
Query 60918 AIRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPSWEGPFKVTEVCRPG
60739
I++ARY Q L+RYH + V R +GDLVLR++L E HKLSP WEGPF V E+ RPG
Sbjct 1756 VIQSARYQQTLRRYHDKAVRQRFFSIGDLVLRRILTGEGRHKLSPLWEGPFIVAEITRPG
1815
Query 60738 CVRLATTKGVPLPNL*NI 60685
RL G + N NI
Sbjct 1816 SYRLTRMDGTEVGNSWNI 1833
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix

adjust.
Identities = 64/220 (29%), Positives = 90/220 (41%), Gaps = 32/220 (15%)
Frame = -1
Query 62250 NDLRAELNCMRAGEDARVSLERARERRLNVE-GRNLDYDFAAVAPQTPTGARI*ARVPLA
62074
NDLR +N R DAR S+ +RERR E R +YD P R +
Sbjct 286 NDLRHTINSRR---DARSSINASRERRHENEIRRREEYDRDHGFPTQSQATRTESATAST
342
Query 62073 G----------------------------VGCAALADHLRAVAWLSKFQPHQSEKYDGMS
61978
G G +AL LRA+ W F+ +KY+
Sbjct 343 GGTTRGRSRNRHHHSPPRDRRHPRRQEDTCGVSALTPRLRAIQWPPNFKVSNFDKYEPKQ
402
Query 61977 NPSEFLQVYVTAITAAGGDTAVMATYFHVALSKPARTWLMNLAPGSIYSWEELCARFTSN
61798
+P +L VY TA AAG VM Y + L + A WL +L I W + RF +N
Sbjct 403 DPGGWLAVYTTAARAAGASEDVMTAYLPIVLGQDALQWLRHLPRHCIDDWGDFSRRFIAN
462
Query 61797 FASAYQQHGVEAHLHAVRQEPRETLRAFISYFTKVRGTIP 61678
F S + L ++++ ETLR+++ F +R IP
Sbjct 463 FQSLSDKPAQPWDLKSIKRRGDETLRSYLKRFQTMRNRIP 502
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix
adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 0/128 (0%)
Frame = +2
Query 144866 SPLAPQLQVSPWPANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALE
145045
S L P+L+ WP NF+ + KY DP ++ Y A ++G + M I L
Sbjct 375 SALTPRLRAIQWPPNFKVSNFDKYEPKQDPGGWLAVYTTAARAAGASEDVMTAYLPIVLG
434
Query 145046 GPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKF
145225
L W LP ID W +F+ NFQ +L K + ETLR Y ++F
Sbjct 435 QDALQWLRHLPRHCIDDWGDFSRRFIANFQSLSDKPAQPWDLKSIKRRGDETLRSYLKRF
494
Query 145226 LTLKSQLP 145249
T+++++P

Sbjct 495 QTMRNRIP 502
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix
adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Frame = +2
Query 35447 ASPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAV
35626
S L+ L+A WPP++K ++ DP +L Y + G + VM + +
Sbjct 374 VSALTPRLRAIQWPPNFKVSNFDKYEPKQDPGGWLAVYTTAARAAGASEDVMTAYLPIVL
433
Query 35627 RSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRR
35806
A W L I W + +FQ KP L + +E L++Y++R
Sbjct 434 GQDALQWLRHLPRHCIDDWGDFSRRFIANFQSLSDKPAQPWDLKSIKRRGDETLRSYLKR
493
Query 35807 FLRLRAQAPTVPNEIVIEAMIKGLRPGPSA 35896
F +R + P E +I G +P P+A
Sbjct 494 FQTMRNRIP--------EDLIGGAKPAPTA 515
Score = 35.8 bits (81), Expect(3) = 1e-06, Method: Composition-based
stats.
Identities = 16/41 (39%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Frame = +3
Query 23493 KESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGK 23615
K +L+KC S G++L++ +H G G H SR L+GK
Sbjct 1469 KRGASGVLMKCILPSTGKQLLEEVHAGQCGVHAASRTLVGK 1509
Score = 32.3 bits (72), Expect(3) = 1e-06, Method: Composition-based
stats.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
Frame = +1
Query 23617 KSFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
K F FYW D +LV+RC+ C + Q+ P
Sbjct 1509 KVFRSEFYWPTAKNDAAELVQRCEACQYLSKQQHMP 1544
Score = 28.1 bits (61), Expect(3) = 1e-06, Method: Composition-based

stats.
Identities = 13/44 (30%), Positives = 20/44 (45%), Gaps = 2/44 (5%)
Frame = +2
Query 23744 IQWS*PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKWAKLVTI 23875
+ W P W LD+IGP A G + ++ + KW + I
Sbjct 1553 VTW--PFACWGLDMIGPFKKAQGGYTHVLVAIDKFTKWIEFQPI 1594
>pir||S58484 gag protein - maize
gb|AAA93147.1| gag [Zea mays]
Length=375
Score = 575 bits (1483), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 302/339 (89%), Positives = 325/339 (96%), Gaps = 0/339 (0%)
Frame = +2
Query 35270 MARLAELQRQIDEASEEVRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGNFVFDDA
35449
MARLA+LQRQIDEASEEVRHL QD+Q+RRP ++LHQEGF NEDDWY++FHHGNF FDDA
Sbjct 1 MARLADLQRQIDEASEEVRHLVQDDQNRRPPRRELHQEGFYNEDDWYEDFHHGNFAFDDA
60
Query 35450 SPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAVR
35629
SPLS ELQATPWP SYKPPQLP++DGH+DPKQFLMSYEAT+SSYGGN +VMAKSFVMAV+
Sbjct 61 SPLSTELQATPWPQSYKPPQLPMYDGHTDPKQFLMSYEATISSYGGNTAVMAKSFVMAVK
120
Query 35630 SVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
35809
SVAQTWYSSLRPGTITSWQKLKD+L+TSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
Sbjct 121 SVAQTWYSSLRPGTITSWQKLKDMLITSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRF
180
Query 35810 LRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRADNDFRQR
35989
LRLRAQAPTVPNEIVIEAMIKGLR G SAQYFARKPPQTLEKLLQKMDEYIRADNDFRQR
Sbjct 181 LRLRAQAPTVPNEIVIEAMIKGLRSGHSAQYFARKPPQTLEKLLQKMDEYIRADNDFRQR
240
Query 35990 REEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDDKGSQQQRPqyssqasgqqqssfrpps
36169
REEAFRFSEMTRGFGGRF+ RHVRSIH+STQ+DD+GSQQQRPQYS QASGQQQS RPP+
Sbjct 241 REEAFRFSEMTRGFGGRFHTRHVRSIHNSTQSDDRGSQQQRPQYSLQASGQQQSPVRPPA

300
Query 36170 prgrgargfggrfgDQPRRIFCLFCGENKGHTTRMCHVT 36286
PRGRGARGFGGRFGDQPRRI+C+FCGE+KGHTTRMCHVT
Sbjct 301 PRGRGARGFGGRFGDQPRRIYCIFCGEDKGHTTRMCHVT 339
Score = 152 bits (384), Expect = 8e-39, Method: Compositional matrix
adjust.
Identities = 110/373 (29%), Positives = 175/373 (47%), Gaps = 58/373 (16%)
Frame = +2
Query 144617 ILEAKRQRVSAQAKVRQMIRDEEKRA---RELEQEIALMQHEGQHDLQHGPPLQQRAPAG
144787
+ + +RQ A +VR +++D++ R REL QE + + D HG
Sbjct 4 LADLQRQIDEASEEVRHLVQDDQNRRPPRRELHQEGFYNEDDWYEDFHHG----------
53
Query 144788 DLFIPQRGPFIPHAAAFQGINY-LDERSPLAPQLQVSPWPANFRAGTYSKYNGNTDPA*Y
144964
N+ D+ SPL+ +LQ +PWP +++ Y+G+TDP +
Sbjct 54 --------------------NFAFDDASPLSTELQATPWPQSYKPPQLPMYDGHTDPKQF
93
Query 144965 IMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQ
145144
+MSY+ I+S GG+ A MAKSF++A++ TWY+ L P +I SW+ L+D + +FQG+Q
Sbjct 94 LMSYEATISSYGGNTAVMAKSFVMAVKSVAQTWYSSLRPGTITSWQKLKDMLITSFQGFQ
153
Query 145145 PDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCI
145324
L C +E L+ Y R+FL L++Q P+V ++I I I GLR+ +
Sbjct 154 TKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRSGHSAQYFA
213
Query 145325 TDPPKNLQELYQLFEKYVRSE-ELHQHKVESQRKPKdppqssqt*trppqsdsGWDSRSQ
145501
PP+ L++L Q ++Y+R++ + Q + E+ R + + +R
Sbjct 214 RKPPQTLEKLLQKMDEYIRADNDFRQRREEAFRFSEMTRGFGGR----------FHTRHV
263
Query 145502 QQVHNIANQHPAGEAARRQDYppqgrgngtr-------------grgqgraqqprrFYCL
145642
+ +HN G +R Y Q G G G QPRR YC+
Sbjct 264 RSIHNSTQSDDRGSQQQRPQYSLQASGQQQSPVRPPAPRGRGARGFGGRFGDQPRRIYCI

323
Query 145643 FHGEDCAHPTRDC 145681
F GED H TR C
Sbjct 324 FCGEDKGHTTRMC 336
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix
adjust.
Identities = 55/174 (32%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query 62061 AALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALS
61882
+ L+ L+A W ++P Q YDG ++P +FL Y I++ GG+TAVMA F +A+
Sbjct 61 SPLSTELQATPWPQSYKPPQLPMYDGHTDPKQFLMSYEATISSYGGNTAVMAKSFVMAVK
120
Query 61881 KPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAH-LHAVRQEPRETLRAFISY
61705
A+TW +L PG+I SW++L ++F +Q V A L Q+ E L+A++
Sbjct 121 SVAQTWYSSLRPGTITSWQKLKDMLITSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVRR
179
Query 61704 FTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATHDVETVTTLFALADKCARA 61543
F ++R P + + +I A +G+R + A +T+ L D+ RA
Sbjct 180 FLRLRAQAPTVPNEIVIEAMIKGLRSGHSAQYFARKPPQTLEKLLQKMDEYIRA 233
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix
adjust.
Identities = 38/142 (27%), Positives = 63/142 (44%), Gaps = 1/142 (1%)
Frame = +1
Query 119485 YSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLV
119664
Y G T P+ +L Y G + ++ ++ + + A+ L PG I++W L
Sbjct 84 YDGHTDPKQFLMSYEATISSYG-GNTAVMAKSFVMAVKSVAQTWYSSLRPGTITSWQKLK
142
Query 119665 QAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAG
119844
+FQG +P ++ L C Q E L+ Y+RRF + R + P V + VI A + G
Sbjct 143 DMLITSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKG
202

Query 119845 TTCRDLVSKLGRKTPTRVSELM 119910
RK P + +L+
Sbjct 203 LRSGHSAQYFARKPPQTLEKLL 224
>gb|ABF67953.1| CACTA TnpD transposase [Zea mays]
Length=1141
Score = 601 bits (1550), Expect = 0.0, Method: Compositional matrix
adjust.
Identities = 288/440 (65%), Positives = 348/440 (79%), Gaps = 13/440 (3%)
Frame = +1
Query 6964 ENRRWMYEGWKKRGALSSEWVAKTDAFLDHAFARSETGTDVRCPCSKCRNINFLDRRTMS
7143
E+RRWMYEGW+ S +W+ KT+ F+D AFA S TGTDVRCPCS CR D+RT+S
Sbjct 14 EDRRWMYEGWRMNDP-SVDWIRKTEDFIDRAFAISRTGTDVRCPCSMCRICRCQDKRTLS
72
Query 7144 IHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEEEDYDRMEEMLDDVRHE--FVTVDSE
7317
H+CK GYMP YEVWV+HGED P SE + ++ + DRM+EML+D+R + FV +
Sbjct 73 GHLCKYGYMPDYEVWVYHGEDFPRENSSEANNTDDVECDRMDEMLEDLREDPDFVFPPNH
132
Query 7318 NPGQPTEFEDPATPEVQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNNCYK
7497
E+P PEV+KFF+LLKAAEEPLHEHT V+VL FVTRLMAIKSKF FSNNCY
Sbjct 133 --------EEPPPPEVKKFFDLLKAAEEPLHEHTTVSVLAFVTRLMAIKSKFVFSNNCYN
184
Query 7498 ELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKCTVC
7677
ELLN+IS+V P NHKMPKD+YQ +KLLSGLGMDY+KIDVC +NCMLFWK+ + KC C
Sbjct 185 ELLNLISEVFPPNHKMPKDVYQCRKLLSGLGMDYQKIDVCPDNCMLFWKDHENDSKCLKC
244
Query 7678 GERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVRENPNV
7857
G+ R+VEV+NDDG VT+ +A+KQLRYMPL PR+KRLF+S+NTARHMRWHKE RE+ +V
Sbjct 245 GKSRYVEVKNDDGEMVTSTVAQKQLRYMPLAPRVKRLFLSRNTARHMRWHKEREREDTHV
304
Query 7858 MVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYNLPP
8037
M HP+D+DAWKALD FD FA E RN+R GLATDGF+PFN A SYSCWPVF +PYNLPP

Sbjct 305
364
MTHPSDSDAWKALDDFDPEFASEARNIRIGLATDGFTPFNTNAASYSCWPVFVIPYNLPP
Query 8038 ALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILWEGVEAYDCYKKQKFNLRAAF
8217
LCMKY+++FL LIIPGPDHPG ++VMM+PLI++LK LW+GVEAYDCYK ++F LR A+
Sbjct 365 HLCMKYDYMFLSLIIPGPDHPGKGLNVMMQPLIDDLKKLWKGVEAYDCYKNERFTLRVAY
424
Query 8218 LWSIHDFMAYGV--RWSCHG 8271
LWSIHDFMAY + WSCHG
Sbjct 425 LWSIHDFMAYSLFAGWSCHG 444
Score = 132 bits (333), Expect(2) = 9e-45, Method: Compositional matrix
adjust.
Identities = 84/160 (53%), Positives = 107/160 (67%), Gaps = 16/160 (10%)
Frame = +1
Query 8710 KQLKVVFFDCDWFSPNT-TRENQYGMVEVKHNDRLKGHDTIILAHQCEQVYYMTYPSKKN
8886
K LKVVFF CDWF PN T ENQ+GMVEVKH + +LAHQ +QVYY+ YPS K
Sbjct 997 KNLKVVFFKCDWFDPNQGTVENQFGMVEVKHELKTSACSKFVLAHQVDQVYYIPYPSIK-
1055
Query 8887 GLVDWRVVYKVNPRERLYAPGDAGYVESQIEQEVGAAEIFQDEELTSTFNVQTEMLEESL
9066
L VVYKVNPRE+L+ G+ + E+++E EI+Q++EL + FN+ TE+L ESL
Sbjct 1056 -LEATWVVYKVNPREQLHNKGE--WFEAEVE------EIYQEDELPANFNIDTEVLPESL
1106
Query 9067 LGDQNDVEvppkrkrvtrkkkATWRPLNRRKQLDPDFDYD 9186
+GD DV P KRKR ++K + NRRKQ DPDF+YD
Sbjct 1107 VGDPEDVVSPKKRKRKSKKITS-----NRRKQFDPDFEYD 1141
Score = 73.6 bits (179), Expect(2) = 9e-45, Method: Compositional matrix
adjust.
Identities = 41/74 (55%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query 8504 QFSLEAVTGRRYGRM-MSMV*FRSTRFEDDHPLAATTNSGVVTRAVDDEGKVTNYYGVIN
8680
Q S V R YGR + FRST+FE P AAT N+GVV RAVDD G+ NYYGVIN
Sbjct 927 QMSYAIVKVRSYGRYDIKGFRFRSTKFECTRPFAATKNTGVVCRAVDDRGREMNYYGVIN
986

Query 8681 DIIEYKFFKINNSK 8722
DI+EY F N K
Sbjct 987 DILEYDFAGSKNLK 1000
Score = 67.8 bits (164), Expect(2) = 5e-17, Method: Compositional matrix
adjust.
Identities = 39/62 (63%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Frame = +3
Query 23274 IVSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLY
23453
VS LAF TRLMAIKSKF FS+ Y EL++LI +V PNHK+P+D+Y +KLL GLGM Y
Sbjct 159 TVSVLAFVTRLMAIKSKFVFSNNCYNELLNLISEVFPPNHKMPKDVYQCRKLLSGLGMDY
218
Query 23454 GK 23459
K
Sbjct 219 QK 220
Score = 45.1 bits (105), Expect(2) = 5e-17, Method: Compositional matrix
adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Frame = +1
Query 22822 IMGEDH**MYGGWNNSASHSF*WMVKTKEFVDCTFNLSATPTSTNVLCPYIDCHKYKCQE
23001
++GED MY GW + S W+ KT++F+D F +S T T+V CP C +CQ+
Sbjct 11 MVGEDRRWMYEGWRMN-DPSVDWIRKTEDFIDRAFAISRT--GTDVRCPCSMCRICRCQD
67
Query 23002 KQISDDPHLYLYFHTKLLGVVAPHESYCQH-EAqqqhkr*hkq*rMIWLIYRMAEVFNDI
23178
K+ L H G + +E + H E + RM E+ D+
Sbjct 68 KRT-------LSGHLCKYGYMPDYEVWVYHGEDFPRENSSEANNTDDVECDRMDEMLEDL
120
Query 23179 RQEYD----RNSKD*MLGEVKRFSYHIRDLEEPLHE*CPPSLL 23295
R++ D N ++ EVK+F ++ EEPLHE S+L
Sbjct 121 REDPDFVFPPNHEEPPPPEVKKFFDLLKAAEEPLHEHTTVSVL 163
>gb|AAC01574.1| hypothetical protein [Zea mays]
Length=464

Score = 567 bits (1462), Expect = 1e-180, Method: Compositional matrix
adjust.
Identities = 343/487 (70%), Positives = 372/487 (76%), Gaps = 25/487 (5%)
Frame = -1
Query 62703 MVHIVEHHDFMPEDFLVEEEAASSTpratnrpapgaaaavhyaRQHTPAQTsrasraap-
62527
MV IVEH DFLV++EA SSTP+ NRP G AA QHT AQTSR A
Sbjct 2 MVQIVEHRAKTSTDFLVKKEAVSSTPQVPNRPVSGTAAVHAAR-QHTAAQTSRTPSRAAP
60
Query 62526 galpaarellRHPPSSTASPGAMKQWRNDVDRLLGMAHSGSArprprssrRQHEasasvr
62347
GAL AARELLRHPPSSTASPGAMKQW++DV+R L MAHS S R RP+SS RQ+EAS S+R
Sbjct 61 GALLAARELLRHPPSSTASPGAMKQWQDDVNRQLDMAHSTSTRSRPQSSHRQYEASTSMR
120
Query 62346 spsvraaPTEDLRAELNRRCAGDDAPVSLERSNDLRAELNCMRAGEDARVSLERARERRL
62167
SPSVR A T DL ELN R AG+D
ARVSLERA ERR
Sbjct 121 SPSVRGAQTNDLWVELNHRRAGED-----------------------ARVSLERACERRQ
157
Query 62166 NVEGRNLDYDFAAVAPQTPTGARI*ARVPLAGVGCAALADHLRAVAWLSKFQPHQSEKYD
61987
N+EGRNLD DFA V PQ P G R A VPLAGVGCAAL DHLRA +W SKF+PH EKYD
Sbjct 158 NIEGRNLDQDFAEVVPQAPMGTRSQAGVPLAGVGCAALVDHLRAASWPSKFRPHLPEKYD
217
Query 61986 GMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALSKPARTWLMNLAPGSIYSWEELCARF
61807
G SNPSEFLQVYVTAITAAGG+TA+MATYFHVALS PARTWLMNL+PGSIYSWEEL ARF
Sbjct 218 GTSNPSEFLQVYVTAITAAGGNTAMMATYFHVALSGPARTWLMNLSPGSIYSWEELYARF
277
Query 61806 TSNFASAYQQHGVEAHLHAVRQEPRETLRAFISYFTKVRGTIPRISDASIITAFHQGVRD
61627
+NFASAYQQHGVEAHLHAVRQEPRETLR FIS FTKV+GTIPRISDASIITAF QGVRD
Sbjct 278 VANFASAYQQHGVEAHLHAVRQEPRETLRMFISRFTKVQGTIPRISDASIITAFRQGVRD
337
Query 61626 EKMLEKLATHDVETVTTLFALADKCARATEGRAWHSAPQTGVTQMGGPGAVAQDGkkkkk
61447
EKMLEKLATHDVE V TL ALADKCARA EGRAWH APQTG TQ GG GA+ +DGKKK+K
Sbjct 338 EKMLEKLATHDVEIVPTLLALADKCARAAEGRAWHLAPQTGATQSGGSGAIPRDGKKKEK

397
Query 61446 KNSGHERPSSAAPIVAAATGGWSERNKRPWP*RGNINSYPMHPNSRHSAAECREIIELAK
61267
K+ H++P S A +VA TGG +RNKRP P RGN S P+HPN RH+ ECREII+LAK
Sbjct 398 KDRDHQKPRSTALVVAVGTGGRGDRNKRPRPQRGNSGSCPVHPNGRHNTVECREIIDLAK
457
Query 61266 RVCERRE 61246
RV ER E
Sbjct 458 RVSERHE 464
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix
adjust.
Identities = 53/173 (31%), Positives = 84/173 (49%), Gaps = 0/173 (0%)
Frame = +2
Query 144872 LAPQLQVSPWPANFRAGTYSKYNGNTDPA*YIMSYQVAIASSGGDDATMAKSFIIALEGP
145051
L L+ + WP+ FR KY+G ++P+ ++ Y AI ++GG+ A MA F +AL GP
Sbjct 195 LVDHLRAASWPSKFRPHLPEKYDGTSNPSEFLQVYVTAITAAGGNTAMMATYFHVALSGP
254
Query 145052 TLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYYRKFLT
145231
TW L P SI SW+ L +F+ NF A L + + +ETLR + +F
Sbjct 255 ARTWLMNLSPGSIYSWEELYARFVANFASAYQQHGVEAHLHAVRQEPRETLRMFISRFTK
314
Query 145232 LKSQLPSVDDQIAIHYAISGLRASVLYSHCITDPPKNLQELYQLFEKYVRSEE
145390
++ +P + D I G+R + T + + L L +K R+ E
Sbjct 315 VQGTIPRISDASIITAFRQGVRDEKMLEKLATHDVEIVPTLLALADKCARAAE 367
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix
adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 2/174 (1%)
Frame = +2
Query 35450 SPLSAELQATPWPPSYKPPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAVR
35629
+ L L+A WP ++P +DG S+P +FL Y +++ GGN ++MA F +A+
Sbjct 193 AALVDHLRAASWPSKFRPHLPEKYDGTSNPSEFLQVYVTAITAAGGNTAMMATYFHVALS
252

Query 35630 SVAQTWYSSLRPGTITSWQKLKDLLLTSF-QGFQTKPVTAQALFQCTQDHEEYLQAYVRR
35806
A+TW +L PG+I SW++L + +F +Q V A L Q+ E L+ ++ R
Sbjct 253 GPARTWLMNLSPGSIYSWEELYARFVANFASAYQQHGVEAH-LHAVRQEPRETLRMFISR
311
Query 35807 FLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQKMDEYIRA 35968
F +++ P + + +I A +G+R + A + + LL D+ RA
Sbjct 312 FTKVQGTIPRISDASIITAFRQGVRDEKMLEKLATHDVEIVPTLLALADKCARA 365
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix
adjust.
Identities = 47/154 (31%), Positives = 73/154 (47%), Gaps = 1/154 (1%)
Frame = +1
Query 119482 KYSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDL
119661
KY G + P +L Y A G + ++ + LS AR L +L PG I +W++L
Sbjct 215 KYDGTSNPSEFLQVYVTAITAAG-GNTAMMATYFHVALSGPARTWLMNLSPGSIYSWEEL
273
Query 119662 VQAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLA
119841
F NF Y + G L + Q+ E+LR +I RF+K + +P ++D+ +I AF
Sbjct 274 YARFVANFASAYQQHGVEAHLHAVRQEPRETLRMFISRFTKVQGTIPRISDASIITAFRQ
333
Query 119842 GTTCRDLVSKLGRKTPTRVSELMDIATKSASGQE 119943
G ++ KL V L+ +A K A E
Sbjct 334 GVRDEKMLEKLATHDVEIVPTLLALADKCARAAE 367
>ref|NP_001131521.1| uncharacterized protein LOC100192860 [Zea mays]
gb|ACF79960.1| unknown [Zea mays]
Length=521
Score = 570 bits (1468), Expect = 1e-180, Method: Compositional matrix
adjust.
Identities = 310/325 (95%), Positives = 315/325 (97%), Gaps = 0/325 (0%)
Frame = -1
Query 77361 NSLNYGTISAGVDLYTEDNFEDFVQFYEPARLGIPRRFGETAGLRHHPAVINKIARVTIL
77182
NSLNYGTISAGVDLYTEDNFEDFVQFYEPARLGIPRRFGETAGLRHHPAVINKIARVTIL

Sbjct 197
256
NSLNYGTISAGVDLYTEDNFEDFVQFYEPARLGIPRRFGETAGLRHHPAVINKIARVTIL
Query 77181 PKSGDKSKIRDKFWNIIQHIMNGEVMNIVLFMMRQLNDLKMDKNQNLAYAPYIMALIKSK
77002
PKSGDKSKIR+KFWNII HIMNGEVMNIVLFMMRQLNDLKMDKNQNLAYAPYIMALIKSK
Sbjct 257 PKSGDKSKIREKFWNIIHHIMNGEVMNIVLFMMRQLNDLKMDKNQNLAYAPYIMALIKSK
316
Query 77001 TRFEGPCEIVHTPFRPFKNEIGFLTRPLTPFPDDEEDPGYAGGAAPNVEEqqmppppppp
76822
TRFEGPCEIVHTPFRPFKNEIGFLTRPLTPFPDDEEDPGY GGAAPNVEEQQMPPPPPPP
Sbjct 317 TRFEGPCEIVHTPFRPFKNEIGFLTRPLTPFPDDEEDPGYEGGAAPNVEEQQMPPPPPPP
376
Query 76821 qpQHYWEPAPGYFDPYFHNMQQGLETHIDARFDGLMSHVDHRLDDMQSRFDSNWDALNSE
76642
QPQHYWEPAPGYFDPYFHNMQQGLE HID RF+GLMSHVDHRLDDM+SRFD NWD LNSE
Sbjct 377 QPQHYWEPAPGYFDPYFHNMQQGLEAHIDTRFEGLMSHVDHRLDDMRSRFDDNWDVLNSE
436
Query 76641 FSDFRDQIHTNVTDPIMSRLNNMQQSFQDNMGALSSQFDNLSTTDNlhdisqrqqqlqqd
76462
FSD RD IHTNVTDPIMSRLNNMQQSFQDNMGALSSQFDNLSTTDN+HDISQRQQQLQQD
Sbjct 437 FSDLRDHIHTNVTDPIMSRLNNMQQSFQDNMGALSSQFDNLSTTDNMHDISQRQQQLQQD
496
Query 76461 fgqfsslfDTFSTHYYNMHPPPSDQ 76387
F QFSSLFDTF THYY+MHPPPSDQ
Sbjct 497 FDQFSSLFDTFRTHYYHMHPPPSDQ 521
Score = 249 bits (637), Expect = 3e-70, Method: Compositional matrix
adjust.
Identities = 124/152 (82%), Positives = 129/152 (85%), Gaps = 3/152 (2%)
Frame = -1
Query 79686 GFGGLRKKLAGRFQSKRPRGNDDDYTPTTDSEAQSSAGGTESMDAEDFLHVHPDYPIDIQ
79507
G GGLRKKLAGRF+SKRPRGNDDDY PTTDSEAQSSAGGTESMDAEDF HVHPDYPIDIQ
Sbjct 6 GLGGLRKKLAGRFKSKRPRGNDDDYVPTTDSEAQSSAGGTESMDAEDFPHVHPDYPIDIQ
65
Query 79506 GWTYPKRRFSMAEYCSRRTVNQYALPSDTNIQFFHTQLQFDVFWGTLWIPTFIS--ISD*
79333
GWT+PKRRFSM EYCSRRTVNQYALPSDTNIQFFHTQLQFDVFWGTL F + D

Sbjct 66
125
GWTFPKRRFSMTEYCSRRTVNQYALPSDTNIQFFHTQLQFDVFWGTLVDTNFHKHQVIDW
Query 79332 LVLLAQSISHGGSHPKFETCGLNQFMGQRTDF 79237
LL+QS+ G PKFE CGL QFMGQRTDF
Sbjct 126 SFLLSQSVMEGLI-PKFEACGLYQFMGQRTDF 156
>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
Length=800
Score = 547 bits (1410), Expect = 7e-169, Method: Compositional matrix
adjust.
Identities = 271/436 (62%), Positives = 331/436 (76%), Gaps = 14/436 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSS--
82446
S DV FDETNGSQ E +LD++G + A++ M+IG++ PKE ++ + PSSS
Sbjct 179 SCDVVFDETNGSQVEQVDLDEIGNEEAPCIALRNMSIGDVCPKESEEPPNAQDQPSSSMQ
238
Query 82445 ----TINEE----DHQSQQLNETI--DTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKD
82296
T NE+ D + Q +E D+++QG R+H +I +D
Sbjct 239 ASPPTQNEDEAQNDEEQNQEDEPPQDDSNNQGGDANDQEKEDEEEPRPPHPRVHQAIQRD
298
Query 82295 HPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFAR
82116
HPVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF R
Sbjct 299 HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTR
358
Query 82115 NEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVA
81936
NEVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVA
Sbjct 359 NEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVA
417
Query 81935 RLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKA
81756
RLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV++LSKA
Sbjct 418 RLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKA
477

Query 81755 LYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDL
81576
LYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 478 LYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKILKNDLFVCQIYVDDIIFGSTNES
537
Query 81575 FCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIK
81396
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FISQ+KY +D+L KFG+++AKPIK
Sbjct 538 TCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILTKFGMKDAKPIK
597
Query 81395 TPMATNGHLDLDEGGT 81348
TPM TNGHLDLD GG
Sbjct 598 TPMGTNGHLDLDTGGA 613
Score = 335 bits (860), Expect = 1e-96, Method: Compositional matrix
adjust.
Identities = 172/265 (65%), Positives = 197/265 (74%), Gaps = 12/265 (5%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 354 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
409
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 410 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
467
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVY+LSKALY LK+AP WYECL+DFLI+N FKV K TLFTK DLFVCQI VD
Sbjct 468 PNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKILKNDLFVCQIYVD
527
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFISQTKYTQDIL
Sbjct 528 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILTK
587

Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGG 142206
F +KDAKPIKT MGTNGHLDLD GG
Sbjct 588 FGMKDAKPIKTPMGTNGHLDLDTGG 612
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix
adjust.
Identities = 63/70 (90%), Positives = 66/70 (94%), Gaps = 0/70 (0%)
Frame = -3
Query 129598 DPWLESLQNHAVGTLYLPICHGVSHDGPVHPDVVILAEVQELSTGELGSVVGDDGVRDPK
129419
DPWLESLQNHAVGTLYLPI +GVSH GPVHPDVVILAEVQELS GELG++VGDDGVRDPK
Sbjct 731 DPWLESLQNHAVGTLYLPIRYGVSHGGPVHPDVVILAEVQELSAGELGAIVGDDGVRDPK
790
Query 129418 AMDDVGEECH 129389
AMDDVGEE H
Sbjct 791 AMDDVGEERH 800
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix
adjust.
Identities = 37/44 (84%), Positives = 38/44 (86%), Gaps = 0/44 (0%)
Frame = -3
Query 130024 PGLQNLSDDERPFQGRRELVPPLGVLSQPKHQVAHLEVSGPNPS 129893
P NL DDERPF GRRELVPP GVLSQPKHQVAHL+VSGPNPS
Sbjct 687 PDCPNLGDDERPFPGRRELVPPSGVLSQPKHQVAHLDVSGPNPS 730
Score = 40.0 bits (92), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 45 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 90
Score = 29.6 bits (65), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 23/76 (30%), Positives = 34/76 (45%), Gaps = 1/76 (1%)
Frame = +2

Query 53423 EAILNVCHVLNKVPIKD-KKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
EA+ C+ +N++ + K T ++ KK NISY + V +K K PKT
Sbjct 92 EAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKFAPKT
151
Query 53600 VDCVFLRYAFYIVGYR 53647
V+ L Y YR
Sbjct 152 VEGFLLGYDSNTRAYR 167
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix
adjust.
Identities = 25/74 (34%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 30 DNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
88
Query 149443 -WADQLPEVVWALN 149481
WA+ + +A+N
Sbjct 89 FWAEAVNTACYAIN 102
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix
adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Frame = +2
Query 129380 EQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVE
129556
E F + FG+ I ++NGT+F + F E+ I+ +++ P NG VE
Sbjct 7 ETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVE
66
Query 129557 RANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL----------RTTPSRATGFTP
129700
R N +L + + Y ++F W + + +++ +T+ TG P
Sbjct 67 RKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLHRILKKTSYELLTGKKP
123
Query 129701 ---FFLVYGAEAIL 129733
+F V+G++ +

Sbjct 124 NISYFRVFGSKCFI 137
>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
Length=1604
Score = 561 bits (1447), Expect = 2e-165, Method: Compositional matrix
adjust.
Identities = 276/442 (62%), Positives = 333/442 (75%), Gaps = 13/442 (3%)
Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSSTI
82440
S DV FDETNGSQ E +LD+ G + A++ M+IG++ PKE ++ S PSSST
Sbjct 1098 SCDVVFDETNGSQVEQVDLDETGNDEAPCVALRNMSIGDVCPKESEELPSAQDQPSSSTQ
1157
Query 82439 NEEDHQSQQLNETIDTHDQGTSRPQIP--PNASTSNYQTVS---------RIHHSIVKDH
82293
Q++ + + DQ PQ +N Q R+H +I +DH
Sbjct 1158 ASPPTQNEDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAIQQDH
1217
Query 82292 PVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARN
82113
PVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF RN
Sbjct 1218 PVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRN
1277
Query 82112 EVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVAR
81933
EVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVAR
Sbjct 1278 EVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVAR
1336
Query 81932 LEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKAL
81753
LE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV+KLSKAL
Sbjct 1337 LESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKAL
1396
Query 81752 YGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLF
81573
YGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 1397 YGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNEST
1456

Query 81572 CEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKT
81393
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FISQ+KY +D+L KFG+++AKPIKT
Sbjct 1457 CEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKT
1516
Query 81392 PMATNGHLDLDEGGTIVDQKLY 81327
PM TNGHLDLD GG VDQK +
Sbjct 1517 PMGTNGHLDLDTGGKSVDQKFH 1538
Score = 352 bits (904), Expect = 3e-98, Method: Compositional matrix
adjust.
Identities = 180/271 (66%), Positives = 205/271 (76%), Gaps = 12/271 (4%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 1272 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
1327
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 1328 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
1385
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVYKLSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD
Sbjct 1386 PNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVD
1445
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFISQTKYTQDIL
Sbjct 1446 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSK
1505
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQK 142224
F +KDAKPIKT MGTNGHLDLD GGKSVDQK
Sbjct 1506 FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQK 1536

Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix
adjust.
Identities = 42/133 (32%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Frame = -1
Query 73830 NDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHEGTTIVKSAKLYVCKGKFEQFIM
73651
N QA + +L E+N+++ L +A EIW L HEG + K K +G+ +F +
Sbjct 124 NSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHEGDELTKITKRETIEGELGRFRL
183
Query 73650 KEDESVSDMFNRLNEIVNELKGLG-FNVPDVDFTHKFLRSLPEKYETIVTMLVRSDLSTT
73474
++ E M+NRL +VN+++ LG D + LRSL T V L+R + T
Sbjct 184 RKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEMVKVILRSLIFLNPTQV-QLIRGNPRYT
242
Query 73473 --SPTEVLGEILT 73441
+P EV+G ++
Sbjct 243 KMTPEEVIGNFVS 255
Score = 37.7 bits (86), Expect(2) = 3e-04, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ +W
Sbjct 964 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFW 1009
Score = 31.2 bits (69), Expect(2) = 3e-04, Method: Composition-based
stats.
Identities = 23/77 (30%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + + K T ++ KK NISY + V +K K PK
Sbjct 1010 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKFAPK
1069
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 1070 TVEGFLLGYDPNTRAYR 1086

Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix
adjust.
Identities = 30/92 (33%), Positives = 44/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 949 DNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTPDR
1007
Query 149443 -WADQLPEVVWALNTTEC-RATGFTPFCLLHG 149532
WA+ + +A+N R T + LL G
Sbjct 1008 FWAEAVNTACYAINRLYLHRILKKTSYELLTG 1039
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix
adjust.
Identities = 39/164 (24%), Positives = 68/164 (41%), Gaps = 36/164 (22%)
Frame = +2
Query 129380 EQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVE
129556
E F + FG+ I ++NGT+F + F E+ I+ +++ P NG VE
Sbjct 926 ETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVE
985
Query 129557 RANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL----------RTTPSRATGFTP
129700
R N +L + + Y ++F W + + +++ +T+ TG P
Sbjct 986 RKNRTLLDMARTMLDEYKTPDRF---WAEAVNTACYAINRLYLHRILKKTSYELLTGKKP
1042
Query 129701 ---FFLVYGAEAIL-----------PTDLEYGF-----PRTRAY 129775
+F V+G++ + P +E GF P TRAY
Sbjct 1043 NISYFRVFGSKCFILVKRGRKSKFAPKTVE-GFLLGYDPNTRAY 1085
>gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]
Length=1694
Score = 560 bits (1443), Expect = 4e-164, Method: Compositional matrix
adjust.
Identities = 277/465 (60%), Positives = 344/465 (74%), Gaps = 16/465 (3%)

Frame = -2
Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSSTI
82440
S DV FDETNGSQ E +LD++G + A++ M+IG++ PKE ++ + PSSST
Sbjct 1201 SCDVVFDETNGSQVEQVDLDEIGIEEAPCIALRNMSIGDVCPKESEEPPNAQDQPSSSTQ
1260
Query 82439 NEEDHQSQQLNETIDTHDQGTSRPQ--IPPNASTSNYQTVS---------RIHHSIVKDH
82293
Q++ + + DQ PQ + +N Q R+H +I +DH
Sbjct 1261 ASPPTQNEDEAQVDEVEDQANEPPQDDVNDQGGDANDQDKEDEEQRPPHPRVHQAIQRDH
1320
Query 82292 PVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFARN
82113
PVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RVDEAL D DWV AM +ELNNF RN
Sbjct 1321 PVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVDEALQDSDWVVAMQEELNNFTRN
1380
Query 82112 EVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVAR
81933
EVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVAR
Sbjct 1381 EVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVAR
1439
Query 81932 LEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKAL
81753
LE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV++LSKAL
Sbjct 1440 LESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKAL
1499
Query 81752 YGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLF
81573
YGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 1500 YGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLDNDLFVCQIYVDDIIFGSTNEST
1559
Query 81572 CEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKT
81393
CEEF ++M+++FEMSM+GEL +FLG Q+KQL++G FI Q+KY +D+L KFG+++AKPIKT
Sbjct 1560 CEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKT
1619
Query 81392 PMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCM 81258
PM TNGHLDLD GG VDQK +I +Y+ ++++C+

Sbjct 1620 PMGTNGHLDLDTGGKSVDQK---NISVYFVYVFGVMLISLYALCL 1661
Score = 351 bits (900), Expect = 1e-97, Method: Compositional matrix
adjust.
Identities = 184/297 (62%), Positives = 215/297 (72%), Gaps = 17/297 (6%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 1375 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
1430
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 1431 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
1488
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVY+LSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT D DLFVCQI VD
Sbjct 1489 PNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLDNDLFVCQIYVD
1548
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQVKQL++ TFI QTKYTQDIL
Sbjct 1549 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTK
1608
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMC
142302
F +KDAKPIKT MGTNGHLDLD GGKSVDQK S+ ++YV + +I +C
Sbjct 1609 FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQK-----NISVYFVYVFGVMLISLYALC
1660
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix
adjust.
Identities = 60/215 (28%), Positives = 95/215 (44%), Gaps = 17/215 (8%)
Frame = -1
Query 74052 VDLIIPEWDKMASNNNVHIGKPPHFMETIMIIGK*ECQCILEQWVEKIWPIVRDGFVVLK
73873

Sbjct 110
167
+ L P K +V +GKPP F + L + IW +V G V
IPLRYPRISKHTPLLSVPLGKPPTFDGEDYARWSDLMRFHLTSLHKSIWDVVEFGAQV--
Query 73872 EDEPSVSD---NENILT-----NDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHE
73717
PSV D +E+ + N QA + +L E+N+++ L +A E+W L HE
Sbjct 168 ---PSVGDKDYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEVWDVLKTAHE
224
Query 73716 GTTIVKSAKLYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLGFNV-PDVDFTHKFL
73540
G + K K +G+ +F +++ E M+NRL +VN++ L D + L
Sbjct 225 GDELTKITKRETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVCNLESKKWDDHEMVKVIL
284
Query 73539 RSLPEKYETIVTMLVRSDLSTT--SPTEVLGEILT 73441
RSL T V L+R + T +P EV+G ++
Sbjct 285 RSLIFLNPTQV-QLIRGNPRYTKMTPEEVIGNFVS 318
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix
adjust.
Identities = 49/198 (25%), Positives = 84/198 (42%), Gaps = 21/198 (11%)
Frame = +2
Query 129167 RTCQGCQFYARQT--HLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKF
129337
R C CQ +Q H P + + T P + +DL P+ + GG + LV +D +
Sbjct 994 RICSACQ-AGKQVGAHHPHKNIMTT--DRPLELLHMDLFGPIAYISIGGSKYCLVIVDDY
1050
Query 129338 SK--WIEVRPLNSIRSEQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIR
129508
S+ W+ S E F + FG+ I ++NGT+F + F E+ I+
Sbjct 1051 SRFTWVFFLQEKSQTQETLKGFLRRTQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIK
1110
Query 129509 VDWAIVAHPMTNGQVERANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSLRTTPSR
129682
+++ P NG VER N +L + + Y ++F W + + +++ R
Sbjct 1111 HEFSSPYTPQQNGVVERKNQTLLDMARTMLDEYKTSDRF---WAEAVNTACYAINR--GR
1165
Query 129683 ATGFTP-----FFLVYGA 129721
+ F P F L Y +

Sbjct 1166 KSKFAPKTVEGFLLGYDS 1183
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix
adjust.
Identities = 28/85 (33%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 1090 DNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKNQTLLD-MARTMLDEYKTSDR
1148
Query 149443 -WADQLPEVVWALNTTECRATGFTP 149514
WA+ + +A+N R + F P
Sbjct 1149 FWAEAVNTACYAIN--RGRKSKFAP 1171
Score = 38.1 bits (87), Expect(2) = 0.002, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KN+TL D+ ML+ S +W
Sbjct 1105 EEEGIKHEFSSPYTPQQNGVVERKNQTLLDMARTMLDEYKTSDRFW 1150
Score = 28.1 bits (61), Expect(2) = 0.002, Method: Composition-based
stats.
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Frame = +1
Query 53170 ITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
+ +DD +RF +V+ L+ K + K + +N+ +IK
Sbjct 1044 LVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRTQNEFGLRIK 1085
>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
Length=1706
Score = 556 bits (1434), Expect = 6e-163, Method: Compositional matrix
adjust.
Identities = 277/441 (63%), Positives = 333/441 (76%), Gaps = 14/441 (3%)
Frame = -2

Query 82616 SFDVEFDETNGSQDESENLDDVGGTQL-INAMKTMAIGEIKPKEDDDENSVVVIPSSS--
82446
S DV FDETNGSQ E +LD++G + A++ M+IG++ PKE ++ PSSS
Sbjct 1247 SCDVVFDETNGSQIEQVDLDEIGEEETPCIALRNMSIGDVCPKESEEPPIAQDQPSSSMQ
1306
Query 82445 ----TINEE----DHQSQQLNETI--DTHDQGTSRPQIPPNASTSNYQTVSRIHHSIVKD
82296
T NE+ D + Q NE D +DQG R+H +I +D
Sbjct 1307 ASPPTQNEDGAQVDEEEDQSNEPPQDDGNDQGGDANDQEKEDEEEPRPPHPRVHQAIQRD
1366
Query 82295 HPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPNRVDEALLDVDWVNAMHKELNNFAR
82116
HPVD I+GDI KGV TRSR+A FCEH+SFVS +EP+RV+EAL D DWV AM +ELNNF R
Sbjct 1367 HPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTR
1426
Query 82115 NEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFAPVA
81936
NEVW LV RP N NV+GTKWVFRNK ++ GVV RNKARLVA+GY+Q+EGLDFGET+APVA
Sbjct 1427 NEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVA
1485
Query 81935 RLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKA
81756
RLE+IRILLAYA H KLYQMDVKSAFLNG I E VYVEQPPGFED + PNHV+KLSKA
Sbjct 1486 RLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKA
1545
Query 81755 LYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDL
81576
LYGLKQAPRAWYE LRDFL++ FK+GK D TLFTK + DLFVCQIYVDDIIFGSTN+
Sbjct 1546 LYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLNNDLFVCQIYVDDIIFGSTNES
1605
Query 81575 FCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIK
81396
CEEF ++M+++FEMSM+GEL +FLG Q++QL++G FISQ+KY +D+L KFG+++AKPIK
Sbjct 1606 TCEEFSRIMTQKFEMSMMGELKYFLGFQVEQLQEGTFISQTKYTQDILTKFGMKDAKPIK
1665
Query 81395 TPMATNGHLDLDEGGTIVDQK 81333
TPM TNGHLDLD GG VDQK
Sbjct 1666 TPMGTNGHLDLDTGGKSVDQK 1686

Score = 349 bits (896), Expect = 4e-97, Method: Compositional matrix
adjust.
Identities = 179/271 (66%), Positives = 205/271 (76%), Gaps = 12/271 (4%)
Frame = +1
Query 141430 HNFKRNEVWSLVPHPKQKRC------RNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHRF
141591
+NF RNEVW LVP P Q RN+ Q + V + +K + A G F
Sbjct 1422 NNFTRNEVWHLVPRPNQNVVGTKWVFRNK----QDEHGVVTRNKARLVAKGYSQVEGLDF
1477
Query 141592 GL**DFSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
G ++PVARLES ILLAYAT++ FKL+QMDVK+AFLNGPIKEEVYVE+ P FE+ Y
Sbjct 1478 GE--TYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEY
1535
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PNHVYKLSKALY LK+AP WYECL+DFLI+N FKV K TLFTKT + DLFVCQI VD
Sbjct 1536 PNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLNNDLFVCQIYVD
1595
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DIIFGSTN+ +CEEFSR+M QK+EMSMMGEL YFL FQV+QL++ TFISQTKYTQDIL
Sbjct 1596 DIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVEQLQEGTFISQTKYTQDILTK
1655
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGGKSVDQK 142224
F +KDAKPIKT MGTNGHLDLD GGKSVDQK
Sbjct 1656 FGMKDAKPIKTPMGTNGHLDLDTGGKSVDQK 1686
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix
adjust.
Identities = 62/215 (29%), Positives = 98/215 (46%), Gaps = 17/215 (8%)
Frame = -1
Query 74052 VDLIIPEWDKMASNNNVHIGKPPHFMETIMIIGK*ECQCILEQWVEKIWPIVRDGFVVLK
73873
+ L P K +V +GKPP F + L + IW +V G V
Sbjct 110 IPLHYPRISKHTPLLSVPLGKPPTFDGEDYARWSDLMRFHLISLHKSIWDVVEFGAQV--
167

Query 73872 EDEPSVSD---NENILT-----NDQAMNVFYDALDINEFNRIKNLTTAHEIWVKLMEIHE
73717
PSV D +E+ + N QA + +L E+N+++ L +A EIW L HE
Sbjct 168 ---PSVGDENYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHE
224
Query 73716 GTTIVKSAKLYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLGFNV-PDVDFTHKFL
73540
G + K K +G+ +F +++ E M+NRL +VN+++ LG D + + L
Sbjct 225 GDELTKITKRETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVRNLGSKKWDDHEVVNVIL
284
Query 73539 RSLPEKYETIVTMLVRSDLSTT--SPTEVLGEILT 73441
RSL T V L+R + T +P EV+G ++
Sbjct 285 RSLIFLNPTQV-QLIRGNPRYTKMTPEEVIGHFVS 318
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix
adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 26/207 (13%)
Frame = +2
Query 129167 RTCQGCQFYAR-QTHLPAQALQTIPITWPFAVWGLDLVSPLQK-APGGYTHLLVAIDKFS
129340
R C CQ + +H P + + T P + +DL P+ + GG + LV +D +S
Sbjct 1007 RICSACQAGKQVGSHHPHKNIMTT--NRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYS
1064
Query 129341 KWIEVRPLNSIRSEQAVAFFTNIIHRFGVP-NSIITNNGTQFTGRKFLDFCEDHHIRVDW
129517
++ + S E F + FG+ I ++NGT+F + F E+ I+ ++
Sbjct 1065 RFTWEK---SQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEF
1121
Query 129518 AIVAHPMTNGQVERANGMILQGLKPRI--YNDLNKFGKRWMKELPLVVWSL---------
129664
+ P NG VER N +L + + Y ++F W + + +++
Sbjct 1122 SSPYTPQQNGVVERKNRTLLDMARTMLDEYKTSDRF---WAEAVNTACYAINRLYLHRIL
1178
Query 129665 -RTTPSRATGFTP---FFLVYGAEAIL 129733
+T+ TG P +F V+G++ +
Sbjct 1179 KKTSYELLTGKKPNISYFRVFGSKCFI 1205

Score = 39.7 bits (91), Expect(2) = 6e-05, Method: Composition-based
stats.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 0/46 (0%)
Frame = +3
Query 53283 EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
EE HE + Y+ Q NGV E KNRTL D+ ML+ S +W
Sbjct 1113 EEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTSDRFW 1158
Score = 32.0 bits (71), Expect(2) = 6e-05, Method: Composition-based
stats.
Identities = 23/77 (30%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPI-KDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPK
53596
EA+ C+ +N++ + + K T ++ KK NISY + V +K K PK
Sbjct 1159 AEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKFAPK
1218
Query 53597 TVDCVFLRYAFYIVGYR 53647
TV+ L Y YR
Sbjct 1219 TVEGFLLGYDSNTRAYR 1235
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix
adjust.
Identities = 30/94 (32%), Positives = 45/94 (48%), Gaps = 5/94 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDDKKGK--
149442
DNG +F + F G K F+S Y P+ NGVVER N + + + +LD+ K
Sbjct 1098 DNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKN-RTLLDMARTMLDEYKTSDR
1156
Query 149443 -WADQLPEVVWALNTTEC-RATGFTPFCLLHGSE 149538
WA+ + +A+N R T + LL G +
Sbjct 1157 FWAEAVNTACYAINRLYLHRILKKTSYELLTGKK 1190
>gb|AAD20308.1| gag protein [Zea mays]
Length=345
Score =
507 bits (1306), Expect = 1e-161, Method: Compositional matrix

adjust.
Identities = 331/345 (96%), Positives = 337/345 (98%), Gaps = 0/345 (0%)
Frame = +2
Query 35552 MSYEATVSSYGGNASVMAKSFVMAVRSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQT
35731
MSY+ATVSSYGGN +VMAKSFVM VRSVAQTWYSSLRPGTITSWQKLKD+LLTSFQGFQT
Sbjct 1 MSYQATVSSYGGNTAVMAKSFVMVVRSVAQTWYSSLRPGTITSWQKLKDMLLTSFQGFQT
60
Query 35732 KPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFAR
35911
KPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFAR
Sbjct 61 KPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFAR
120
Query 35912 KPPQTLEKLLQKMDEYIRADNDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHSSTQNDD
36091
KPPQTLEKLLQKMDEYIRADNDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIH+STQNDD
Sbjct 121 KPPQTLEKLLQKMDEYIRADNDFRQRREEAFRFSEMTRGFGGRFYPRHVRSIHNSTQNDD
180
Query 36092 KGSQQQRPqyssqasgqqqssfrppsprgrgargfggrfgDQPRRIFCLFCGENKGHTTR
36271
KGSQQQRPQ SSQASGQQQSSFRPP+PRGRGARGFG RFGDQPRRIFCLFCGENKGHTTR
Sbjct 181 KGSQQQRPQCSSQASGQQQSSFRPPAPRGRGARGFGERFGDQPRRIFCLFCGENKGHTTR
240
Query 36272 MCHVTiqkqkeiaeaaaqqaqPKQVMHTASYHSPYIPEYVGNHpavsvasasqpqaswqq
36451
MCHVTIQKQKEIAEAAAQQAQPKQ+MHTASYHSPYIPEYVGNHPAVSVASASQPQASW Q
Sbjct 241 MCHVTIQKQKEIAEAAAQQAQPKQIMHTASYHSPYIPEYVGNHPAVSVASASQPQASWHQ
300
Query 36452 pppppplqqgqqpegsqYTPHQRDFREQSEARTVNSTVPESKHIY 36586
PPPPPPLQQGQQPEG QY HQRDFREQSEARTVNSTVPESKHIY
Sbjct 301 PPPPPPLQQGQQPEGGQYAQHQRDFREQSEARTVNSTVPESKHIY 345
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix
adjust.
Identities = 56/152 (37%), Positives = 88/152 (58%), Gaps = 1/152 (1%)
Frame = +2
Query 144968 MSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQP
145147

Sbjct 1
60
MSYQ ++S GG+ A MAKSF++ + TWY+ L P +I SW+ L+D L +FQG+Q
MSYQATVSSYGGNTAVMAKSFVMVVRSVAQTWYSSLRPGTITSWQKLKDMLLTSFQGFQT
Query 145148 DTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDDQIAIHYAISGLRASVLYSHCIT
145327
L C +E L+ Y R+FL L++Q P+V ++I I I GLR +
Sbjct 61 KPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFAR
120
Query 145328 DPPKNLQELYQLFEKYVRSE-ELHQHKVESQR 145420
PP+ L++L Q ++Y+R++ + Q + E+ R
Sbjct 121 KPPQTLEKLLQKMDEYIRADNDFRQRREEAFR 152
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix
adjust.
Identities = 41/138 (30%), Positives = 70/138 (51%), Gaps = 2/138 (1%)
Frame = -1
Query 61953 YVTAITAAGGDTAVMATYFHVALSKPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQH
61774
Y +++ GG+TAVMA F + + A+TW +L PG+I SW++L ++F +Q
Sbjct 3 YQATVSSYGGNTAVMAKSFVMVVRSVAQTWYSSLRPGTITSWQKLKDMLLTSF-QGFQTK
61
Query 61773 GVEAH-LHAVRQEPRETLRAFISYFTKVRGTIPRISDASIITAFHQGVRDEKMLEKLATH
61597
V A L Q+ E L+A++ F ++R P + + +I A +G+R + A
Sbjct 62 PVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARK
121
Query 61596 DVETVTTLFALADKCARA 61543
+T+ L D+ RA
Sbjct 122 PPQTLEKLLQKMDEYIRA 139
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix
adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 0/119 (0%)
Frame = +1
Query 119557 DDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSRDLRSCH
119736
+ ++ ++ + + A+ L PG I++W L +FQG +P ++ L C
Sbjct 13 NTAVMAKSFVMVVRSVAQTWYSSLRPGTITSWQKLKDMLLTSFQGFQTKPVTAQALFQCT

72
Query 119737 QQLGESLRDYIRRFSKQRTELPNVTDSDVIGAFLAGTTCRDLVSKLGRKTPTRVSELMD
119913
Q E L+ Y+RRF + R + P V + VI A + G RK P + +L+
Sbjct 73 QDHEEYLQAYVRRFLRLRAQAPTVPNEIVIEAMIKGLRPGPSAQYFARKPPQTLEKLLQ
131
>gb|ABF67926.1| Milt1a putative polyprotein [Zea mays]
Length=1045
Score = 520 bits (1340), Expect = 9e-157, Method: Compositional matrix
adjust.
Identities = 367/865 (42%), Positives = 462/865 (53%), Gaps = 107/865
(12%)
Frame = +3
Query 99948
100127
Sbjct 1
58
LEESIRKLTRTLEKSVAPSFPSCETSNRIFMSNTSATNGDLQPRPLYDMPMNSYPGQVPP
++ RKL R +KS +FPS E NTS Q +P Y MPM++YP Q
MQNDCRKLVRAFDKSSIANFPSHEVELGDNTRNTSVKGCHDQSQPPYGMPMDTYPEQT--
Query 100128 PPSLLGRSTPLNTVGPSELLPEPSGPYADRPACSTGQsgaalgpsssllgrsaTLDVAGL
100307
+ + L+ GPS PS P +
Sbjct 59 --QIGSKPADLHMSGPSARERGPSESATAGPIFN-----------------ELPRHAPEP
99
Query 100308 SELLPGPSYP-----YADCLAFYA-GQSGAVPGLPCGAPIMANTAGQFGCTTVQTGYTYA
100469
P +YP Y D + Y G+SG V +GQ + + Y
Sbjct 100 PHRTPNLNYPVGRSAYNDGRSAYNHGRSGYV-------------SGQSAHESFEGDYYLN
146
Query 100470 EPVVAHHAPNYYTPHQQYVSPSTYLNHNTPYSHRP---INTIDRSRQEG-----------
100607
H P++Y HQ S S RP + T + R G
Sbjct 147 PRPSQQHFPSHYAIHQPINSGSRAQESFPAPPRRPERNVQTYEPYRANGNAPRSSNRWGE
206
Query 100608 -RYTNARPNEP-HSPGFGGLPPGAMEKIREEMTELFRDKFRVSVARVGQSYQKPYNHRFD
100781
++TN +P P GGL P A+ +REE+ FRDK VS+ GQSY+KPY+ RFD
Sbjct 207 RQHTNMQPTSPMFDRRVGGLAPAAIGIVREEIAGAFRDKLGVSMIPGGQSYRKPYDSRFD

266
Query 100782 IVSYPQGAMIPEFSKFSSENGRSTHEYIGQFLAHLGELVDGEAFCVCLFSLSLTGTAFAW
100961
YPQG IPEF+KFS + G+ST E+IGQFLA LGEL D EAF V LFSLSLTGTAF W
Sbjct 267 HHPYPQGTRIPEFAKFSGDQGKSTREHIGQFLAQLGELADTEAFRVRLFSLSLTGTAFTW
326
Query 100962 YTALPPNSVNSWNELENKFHEHFFAGEYELGLADLGSV*QGREESVNDYIrrfrdtrnrc
101141
Y ALPPNS+ SW +LE KFHEHFF+G+YEL L DL ++ Q ++ESV+DYIRRF+DTRNRC
Sbjct 327 YAALPPNSILSWGDLEQKFHEHFFSGDYELDLVDLVTLRQEKDESVSDYIRRFQDTRNRC
386
Query 101142 frIHVADKELAGLAFNGLLSYLRDKLDGTQFFSIAELHQRALACESRFKETSKSATRTIH
101321
F+IH+ DK+LAG+AF+GL YL+++L+G QFF++A+LHQRA ACESR KE ++ +
Sbjct 387 FQIHLTDKQLAGIAFDGLRYYLKERLEGIQFFTLAQLHQRASACESRSKELVRTVHHNVP
446
Query 101322 LIEHD--SSDDESADVYTAEFIWPTKAKSLACSSLQPVQKNRQEEIKFTFNVAKCDKIFD
101495
++EH+ SSDDE VYTAE +WP +AKS AC SLQ VQK RQEE+KFTFNV KCDKIFD
Sbjct 447 IVEHNQSSSDDEPKKVYTAEIVWPEQAKSSACYSLQSVQKERQEEVKFTFNVGKCDKIFD
506
Query 101496 ELLKNDNIKLTHNIPPIDELKRRAYCKWHNSFSHATNDCNVFRRQVQSAINEGRLAFQEM
101675
ELLKN NIK+ + +PP DELKRRAYCKWHNSFSHATNDCNVFRRQ+QSAINEGRL FQE
Sbjct 507 ELLKNGNIKIDYIVPPADELKRRAYCKWHNSFSHATNDCNVFRRQIQSAINEGRLKFQE-
565
Query 101676 QVDTQPFPINTIDVACEKVLVWPEMAdkskskdiiiddPR----TSNIS-QKEIARKAPD
101840
DT+PFP+N ID +KVL+ P ADK K K++II + R + IS +K +A K PD
Sbjct 566 --DTEPFPMNVIDFNGKKVLIRPNTADKGKDKEVIIGNAREVDGNNKISCRKVMAEKTPD
623
Query 101841 DKAK-----TSGGTGGRHN**AKHDNLA*ASQTVWHLR------ADGPVLR--QTGRLTL
101981
T+ GG+ +Q H R ADGPV R ++G
Sbjct 624 GGETLKITITNSSAGGQ-------------AQIKGHEREPILRIADGPVPRRGRSGNAEE
670
Query 101982 PDNPPTAKGVSLHTKP*KGKRRNRKTHMVN*SKLTLLFDQLLSKNTIMKTVSTDRSTKKP
102161

Sbjct 671
727
P P T K K +V K + FDQLLSK K +DR K P
PRRPRTFKPRRPEIGTWKTNTFKATGRLV---KSSPTFDQLLSKYVKRKVGPSDRPPKGP
Query 102162 RSPAKTKRVNKTARKATQPASL------IHPMRPGY------FPPvysssvyyhvQTWNG
102305
R P + +R + Q + + P P + Y + N
Sbjct 728 RLPTQVRRQVRPIGPPHQSKRMEGHNVQLRPNVPAWTPPPPYPTMPYPYTYIPPPYAPNQ
787
Query 102306 MMMNPWYMYSPFVYPDWGAPQFYSF 102380
M P Y + YP WGAPQ F
Sbjct 788 MWGMPPYPFGMPQYPAWGAPQTSVF 812
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix
adjust.
Identities = 41/150 (27%), Positives = 70/150 (47%), Gaps = 7/150 (5%)
Frame = +2
Query 144863 RSPLAPQLQVSPWPANFRAGTYSKYNGNTDPA*--YIMSYQVAIASSGGDDATMAKSFII
145036
R P + P+P R ++K++G+ + +I + + +A + F +
Sbjct 258 RKPYDSRFDHHPYPQGTRIPEFAKFSGDQGKSTREHIGQFLAQLGELADTEAFRVRLFSL
317
Query 145037 ALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQGYQPDTDALAELSLCK*QEKETLREYY
145216
+L G TWY LPP SI SW L KF +F + D L +L + ++ E++ +Y
Sbjct 318 SLTGTAFTWYAALPPNSILSWGDLEQKFHEHFFSGDYELD-LVDLVTLRQEKDESVSDYI
376
Query 145217 RKFLTLKS---QLPSVDDQIAIHYAISGLR 145297
R+F ++ Q+ D Q+A A GLR
Sbjct 377 RRFQDTRNRCFQIHLTDKQLA-GIAFDGLR 405
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix
adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Frame = +1
Query 119554 DDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDLVQAFAGN-FQGTYVRPGNSRDLRS
119730
D + +R L L+ TA LPP I +W DL Q F + F G Y + DL +
Sbjct 306 DTEAFRVRLFSLSLTGTAFTWYAALPPNSILSWGDLEQKFHEHFFSGDYEL--DLVDLVT

363
Query 119731 CHQQLGESLRDYIRRFSKQRTELPNV--TDSDVIGAFLAG 119844
Q+ ES+ DYIRRF R + TD + G G
Sbjct 364 LRQEKDESVSDYIRRFQDTRNRCFQIHLTDKQLAGIAFDG 403
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix
adjust.
Identities = 27/125 (22%), Positives = 51/125 (41%), Gaps = 3/125 (2%)
Frame = +2
Query 35453 PLSAELQATPWPPSYKPPQLPVFDGH--SDPKQFLMSYEATVSSYGGNASVMAKSFVMAV
35626
P + P+P + P+ F G ++ + + A + + + F +++
Sbjct 260 PYDSRFDHHPYPQGTRIPEFAKFSGDQGKSTREHIGQFLAQLGELADTEAFRVRLFSLSL
319
Query 35627 RSVAQTWYSSLRPGTITSWQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRR
35806
A TWY++L P +I SW L+ F + + L Q+ +E + Y+RR
Sbjct 320 TGTAFTWYAALPPNSILSWGDLEQKFHEHFFSGDYE-LDLVDLVTLRQEKDESVSDYIRR
378
Query 35807 FLRLR 35821
F R
Sbjct 379 FQDTR 383
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix
adjust.
Identities = 36/125 (29%), Positives = 55/125 (44%), Gaps = 6/125 (5%)
Frame = -1
Query 61917 AVMATYFHVALSKPARTWLMNLAPGSIYSWEELCARFTSNFASA-YQQHGVEAHLHAVRQ
61741
A F ++L+ A TW L P SI SW +L +F +F S Y+ V+ L +RQ
Sbjct 309 AFRVRLFSLSLTGTAFTWYAALPPNSILSWGDLEQKFHEHFFSGDYELDLVD--LVTLRQ
366
Query 61740 EPRETLRAFISYFTKVRGTIPRI--SDASIITAFHQGVRDEKMLEKLATHDVETVTTLFA
61567
E E++ +I F R +I +D + G+R + E+L T+ L
Sbjct 367 EKDESVSDYIRRFQDTRNRCFQIHLTDKQLAGIAFDGLR-YYLKERLEGIQFFTLAQLHQ
425

Query 61566 LADKC 61552
A C
Sbjct 426 RASAC 430
>gb|AAL75487.1|AF466202_13 putative gag-pol precursor -orf2 [Zea mays]
Length=627
Score = 464 bits (1194), Expect = 1e-142, Method: Compositional matrix
adjust.
Identities = 269/293 (92%), Positives = 279/293 (95%), Gaps = 0/293 (0%)
Frame = +1
Query 117868 MGSLQQPFQPGTVLRFGSLEFMSLDGGYDMILLPPPRDSDNGGrqparrrwnrrrLPHVA
118047
MGSLQQPFQPGTVLRFGSLEFMSLDG Y+MILLPPPRDSDNGGRQPARRRWNRRRLPHVA
Sbjct 1 MGSLQQPFQPGTVLRFGSLEFMSLDGSYNMILLPPPRDSDNGGRQPARRRWNRRRLPHVA
60
Query 118048 EEQHsglsrrlprrrrrrqgnqgqagggtslAVERVDGAGAPTGDMSGIDLASETKTSAV
118227
EEQHSGLSRRLP RRRRR+GNQGQAGGGTS AVE+VDGAGAPTGD S + LASETKTSAV
Sbjct 61 EEQHSGLSRRLPHRRRRRRGNQGQAGGGTSSAVEQVDGAGAPTGDTSSVGLASETKTSAV
120
Query 118228 SPQHANSKRTDDASTLAKDLLGVTLVPETTVQSAPDVTSSPPVDQEVPTDSHLVPFGFSL
118407
SPQHANSKRTDDASTLAKDLLGVTLVP+TTVQSAPD TSSPPVDQEVPTDSHLVPFGFS+
Sbjct 121 SPQHANSKRTDDASTLAKDLLGVTLVPKTTVQSAPDATSSPPVDQEVPTDSHLVPFGFSI
180
Query 118408 DPPSDFASVEAFIEACPNPLGYGVRSPWDRLTAVSTYEPSGSEEDDEPNFCWDFSGLGNP
118587
DPPSDFASVEAFIEA PNPLGY +RSPWDRLTAVSTY PSGSEEDDEP+ C DFSGLGNP
Sbjct 181 DPPSDFASVEAFIEASPNPLGYHMRSPWDRLTAVSTYGPSGSEEDDEPDLCCDFSGLGNP
240
Query 118588 SAMRDFMTACDYCLSDCSDGSRSFGDEDCGPSRECFHVDLGGPGEGNHLGITK
118746
SAMRDFMTACDYCLSDCSDGSRS GDEDCGPSRECFHVDLGGPGEGNHLG+ +
Sbjct 241 SAMRDFMTACDYCLSDCSDGSRSLGDEDCGPSRECFHVDLGGPGEGNHLGMGR 293
Score = 332 bits (851), Expect = 4e-97, Method: Compositional matrix
adjust.
Identities = 191/222 (86%), Positives = 197/222 (89%), Gaps = 16/222 (7%)

Frame = +2
Query 128558 LEDKFY--GLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNTpkpek
128731
LEDKFY GLELNH+ARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTD+TP+PEK
Sbjct 420 LEDKFYFYGLELNHVARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDDTPEPEK
479
Query 128732 asaqpeapsaqpeapsaqpeapsTPEGEALRVEGEQSRVTPNRNWQTPYLQYLHRGELPL
128911
ASAQPEAPS
PEGEALRVE E+S VTPNRNWQTPYLQ+LHRGELPL
Sbjct 480 ASAQPEAPS--------------APEGEALRVEEERSGVTPNRNWQTPYLQHLHRGELPL
525
Query 128912 DraearrlarraKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAP
129091
DRAEARRLARR KSFVLLGD KELYHRSPS ILQRCISIAEGQELLQEIHSGACGHHAAP
Sbjct 526 DRAEARRLARRTKSFVLLGDRKELYHRSPSVILQRCISIAEGQELLQEIHSGACGHHAAP
585
Query 129092 RALVGNTFRQGFYWPTAVADATRIVRTCQGCQFYARQTHLPA 129217
RALVGN FRQGFYWP AVADATRIVRTCQGCQFY +QTHLPA
Sbjct 586 RALVGNAFRQGFYWPIAVADATRIVRTCQGCQFYTKQTHLPA 627
Score = 208 bits (529), Expect = 2e-55, Method: Compositional matrix
adjust.
Identities = 105/120 (88%), Positives = 108/120 (90%), Gaps = 0/120 (0%)
Frame = +3
Query 118905 GHRAGMGRPSSDRRSASSTPGHPAPHCRRRQGKAATGF*WGRPEPGCSGNTSPRDAGAIN
119084
G+ GMGRPSS +RSASSTPGH APHCRRRQGKA TGF WGRPEPGCS +TSP DAGAIN
Sbjct 286 GNHLGMGRPSSGQRSASSTPGHLAPHCRRRQGKATTGFQWGRPEPGCSSDTSPHDAGAIN
345
Query 119085 HRGAAYPGRAQESPGGCRGPTGRKLCLPKAGVPLGASHRDFPIHAGSLGPHRAHALHSAC
119264
HR AAYPGRAQESPGGCRGPTGRKLCLPKAGVPLGAS RDFPIHAGSLGPHRAHA HS C
Sbjct 346 HRRAAYPGRAQESPGGCRGPTGRKLCLPKAGVPLGASRRDFPIHAGSLGPHRAHAQHSDC
405
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix
adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)

Frame = +2
Query 148520 TKEVDALAKAAARGETLPSDVFYHVIGTPPVR-----NPEGLQVTNDA----EGHHI---
148663
+ D LAK A+ T+P DVF + P V+ PE +A EG +
Sbjct 439 NETADELAKIASGRTTVPPDVFSRDLHQPSVKTDDTPEPEKASAQPEAPSAPEGEALRVE
498
Query 148664 ---VNLIMTKDWRAPITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGD--QLYKKGISQPM
148828
+ ++W+ P L D EA+RL R+K FVL+GD +LY + S +
Sbjct 499 EERSGVTPNRNWQTPYLQHLHRGELPLDRAEARRLARRTKSFVLLGDRKELYHRSPSVIL
558
Query 148829 LKCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAKN*VTRSCEACQK
149008
+C++ EG ++L+E+HS CG H+ PRAL QGFYWP + + R+C+ CQ
Sbjct 559 QRCISIAEGQELLQEIHSGACGHHAAPRALVGNAFRQGFYWPIAVADATRIVRTCQGCQF
618
Query 149009 FS 149014
++
Sbjct 619 YT 620
Score = 40.4 bits (93), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Frame = +3
Query 23499 SIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGK 23615
S +L +C S +EGQEL++ IH G G+H RAL+G
Sbjct 553 SPSVILQRCISIAEGQELLQEIHSGACGHHAAPRALVGN 591
Score = 29.6 bits (65), Expect(2) = 2e-04, Method: Compositional matrix
adjust.
Identities = 12/35 (34%), Positives = 17/35 (49%), Gaps = 0/35 (0%)
Frame = +1
Query 23620 SFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
+F + FYW V D +VR C C Y + + P
Sbjct 592 AFRQGFYWPIAVADATRIVRTCQGCQFYTKQTHLP 626
>gb|AAG17043.1|AF187822_1 transposase [Zea mays]

Length=854
Score = 466 bits (1200), Expect = 2e-140, Method: Compositional matrix
adjust.
Identities = 236/444 (53%), Positives = 317/444 (71%), Gaps = 20/444 (5%)
Frame = +1
Query 6958 MEENRRWMYEGWKKRGALSSEWVAKTDAFLDHAFARSETGTDVRCPCSKCRNINFLDRRT
7137
M+ +RR MY+GW+K GA S+EW+ T AFL+HAF + TG V+CPC+ C N +
Sbjct 11 MDGDRRVMYDGWRKDGAHSNEWMGVTKAFLEHAF-KDATGRLVKCPCNHCENKWPQKKEE
69
Query 7138 MSIHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEE--EDYDRMEEMLDDVRHEFVTVD
7311
M H+CK+G+MP Y VW HGE + V + E +D+DRM++ML D+ E V ++
Sbjct 70 MEKHLCKSGFMPNYLVWYRHGES-----IRHVDAEVELDDDHDRMDDMLHDLGRE-VEMN
123
Query 7312 SENPGQPTEFEDPATPEVQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNNC
7491
+E PGQ + Q+FF+LL A EE LHEHT+++VL +TRLMAIKSK SN+
Sbjct 124 AEEPGQLPR-------DAQEFFQLLAAGEERLHEHTQMSVLGTLTRLMAIKSKHNISNSA
176
Query 7492 YKELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKCT
7671
Y +++ ++ +VLPENHK+PK+MY +KK+L+GLGM YEKIDVC N+CMLF++E +C
Sbjct 177 YNDIVQLMGEVLPENHKLPKNMYFTKKMLAGLGMTYEKIDVCPNSCMLFFEEDDKLDRCK
236
Query 7672 VCGERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVR--E
7845
C R+VEV ND+G V TK+A KQLR +P+IPRL RLF++K A HM W K GVR
Sbjct 237 HCEASRYVEVTNDEGELVVTKVAAKQLRRLPIIPRLSRLFLNKEIALHMTWPKNGVRLVT
296
Query 7846 NPNVMVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPY
8025
+P++MVHP+D DAWKA D FD FA++ R+VR GL+TDGF+PFN +A+ YSCWPVF VPY
Sbjct 297 DPDIMVHPSDGDAWKAFDEFDPEFANDPRSVRLGLSTDGFTPFNTSASPYSCWPVFIVPY
356
Query 8026 NLPPALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILWEGVEAYDCYKKQKFNL
8205
NLPP L K EF+FL L+IPGP+HPG K+++ +RPLIEELK LW GV+AYD + +++F +

Sbjct 357
416
NLPPELVNKEEFMFLALVIPGPEHPGPKLNMFVRPLIEELKQLWRGVKAYDSHTEKEFTM
Query 8206 RAAFLWSIHDFMAYG--VRWSCHG 8271
RAA+LWS+HD +AYG W HG
Sbjct 417 RAAYLWSVHDLLAYGDWSGWCVHG 440
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix
adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 0/61 (0%)
Frame = +3
Query 23277 VSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLYG
23456
+S L TRLMAIKSK S+ Y +++ L+ +V+ NHK+P++MY +KK+L GLGM Y
Sbjct 154 MSVLGTLTRLMAIKSKHNISNSAYNDIVQLMGEVLPENHKLPKNMYFTKKMLAGLGMTYE
213
Query 23457 K 23459
K
Sbjct 214 K 214
Score = 32.0 bits (71), Expect(2) = 0.44, Method: Compositional matrix
adjust.
Identities = 21/61 (34%), Positives = 26/61 (43%), Gaps = 3/61 (5%)
Frame = +1
Query 22825 MGEDH**MYGGWNNSASHSF*WMVKTKEFVDCTFNLSATPTSTNVLCPYIDCHKYKCQEK
23004
M D MY GW +HS WM TK F++ F T V CP C Q+K
Sbjct 11 MDGDRRVMYDGWRKDGAHSNEWMGVTKAFLEHAFK---DATGRLVKCPCNHCENKWPQKK
67
Query 23005 Q 23007
+
Sbjct 68 E 68
Score = 26.2 bits (56), Expect(2) = 0.44, Method: Compositional matrix
adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Frame = +2
Query 22997 KKNKSVMIHICTYTFIPSY*VWLHH 23071

+K + + H+C F+P+Y VW H
Sbjct 65 QKKEEMEKHLCKSGFMPNYLVWYRH 89
>gb|AAA66266.1| unknown protein [Zea mays]
Length=897
Score = 468 bits (1203), Expect = 2e-140, Method: Compositional matrix
adjust.
Identities = 233/444 (52%), Positives = 307/444 (69%), Gaps = 23/444 (5%)
Frame = +1
Query 6961 EENRRWMYEGWKK-RGALSSEWVAKTDAFLDHAFARSETGTDVRCPCSKCRNINFLDRRT
7137
++ RR MY+G+ S W+ D F+ AF RCPC KCRN+ L +
Sbjct 3 DDRRRAMYDGFDSVTHGHSDAWLRVADEFVALAFVGD--ARLARCPCIKCRNLVRLKKVE
60
Query 7138 MSIHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEEEDYDRMEEMLDDVRHEFVTVDSE
7317
+S HI K+G+MP Y VW HGE + ++S ++D DRMEEMLDD+R+E+
Sbjct 61 LSYHIFKHGFMPNYLVWHEHGE-----VDHTIESDGDQDIDRMEEMLDDIRNEY------
109
Query 7318 NPGQPTEFEDPATPE-VQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNNCY
7494
P + A PE V++F++LL+A+E +HE T V+VL VTRLMA+KSK+ FSN CY
Sbjct 110 ----PDLQNNQAFPEDVREFYKLLEASEAKVHEGTNVSVLQVVTRLMAMKSKYTFSNKCY
165
Query 7495 KELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKCTV
7674
+++ +I D+ P NH MPKD+Y KKL++GLGM+Y+KID CE+NCMLFWKE C
Sbjct 166 NDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQKIDACEDNCMLFWKEHENTTHCIH
225
Query 7675 CGERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVR--EN
7848
C + R+ V ++DG VTTK+ KQLRYMP+ PRLKRLF+++ TA+ MRWHKEG R ++
Sbjct 226 CSKSRYAVVLDEDGNEVTTKVPIKQLRYMPITPRLKRLFLNQETAKQMRWHKEGDRQGQD
285
Query 7849 PNVMVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYN
8028
P+VMVHP+D +AW+ALD FD FA + R+VR GL+TDGF+P++ +TSYSCWPVF +PYN
Sbjct 286 PDVMVHPSDGEAWQALDRFDPEFARDPRSVRLGLSTDGFTPYSNNSTSYSCWPVFMMPYN

345
Query 8029 LPPALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILWEGVEAYDCYKKQKFNLR
8208
LPP CMK E +FL LI+PGP P TKI+V M PLIEELK+LW+GVEAYD + K F LR
Sbjct 346 LPPNKCMKEEVMFLALIVPGPKDPVTKINVFMEPLIEELKMLWQGVEAYDSHLKCCFTLR
405
Query 8209 AAFLWSIHDFMAYGV--RWSCHGI 8274
AA+LWSIHD +AYG+ W HGI
Sbjct 406 AAYLWSIHDLLAYGIFSGWCVHGI 429
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix
adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%), Gaps = 0/61 (0%)
Frame = +3
Query 23277 VSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLYG
23456
VS L TRLMA+KSK+ FS+K Y +++ LIID+ PNH +P+D+YH KKL+ GLGM Y
Sbjct 142 VSVLQVVTRLMAMKSKYTFSNKCYNDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQ
201
Query 23457 K 23459
K
Sbjct 202 K 202
>prf||1206239A ORF 1
Length=905
Score = 467 bits (1202), Expect = 3e-140, Method: Compositional matrix
adjust.
Identities = 233/444 (52%), Positives = 307/444 (69%), Gaps = 23/444 (5%)
Frame = +1
Query 6961 EENRRWMYEGWKK-RGALSSEWVAKTDAFLDHAFARSETGTDVRCPCSKCRNINFLDRRT
7137
++ RR MY+G+ S W+ D F+ AF RCPC KCRN+ L +
Sbjct 11 DDRRRAMYDGFDSVTHGHSDAWLRVADEFVALAFVGD--ARLARCPCIKCRNLVRLKKVE
68
Query 7138 MSIHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEEEDYDRMEEMLDDVRHEFVTVDSE
7317
+S HI K+G+MP Y VW HGE + ++S ++D DRMEEMLDD+R+E+

Sbjct 69
117
LSYHIFKHGFMPNYLVWHEHGE-----VDHTIESDGDQDIDRMEEMLDDIRNEY------
Query 7318 NPGQPTEFEDPATPE-VQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNNCY
7494
P + A PE V++F++LL+A+E +HE T V+VL VTRLMA+KSK+ FSN CY
Sbjct 118 ----PDLQNNQAFPEDVREFYKLLEASEAKVHEGTNVSVLQVVTRLMAMKSKYTFSNKCY
173
Query 7495 KELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKCTV
7674
+++ +I D+ P NH MPKD+Y KKL++GLGM+Y+KID CE+NCMLFWKE C
Sbjct 174 NDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQKIDACEDNCMLFWKEHENTTHCIH
233
Query 7675 CGERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVR--EN
7848
C + R+ V ++DG VTTK+ KQLRYMP+ PRLKRLF+++ TA+ MRWHKEG R ++
Sbjct 234 CSKSRYAVVLDEDGNEVTTKVPIKQLRYMPITPRLKRLFLNQETAKQMRWHKEGDRQGQD
293
Query 7849 PNVMVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYN
8028
P+VMVHP+D +AW+ALD FD FA + R+VR GL+TDGF+P++ +TSYSCWPVF +PYN
Sbjct 294 PDVMVHPSDGEAWQALDRFDPEFARDPRSVRLGLSTDGFTPYSNNSTSYSCWPVFMMPYN
353
Query 8029 LPPALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILWEGVEAYDCYKKQKFNLR
8208
LPP CMK E +FL LI+PGP P TKI+V M PLIEELK+LW+GVEAYD + K F LR
Sbjct 354 LPPNKCMKEEVMFLALIVPGPKDPVTKINVFMEPLIEELKMLWQGVEAYDSHLKCCFTLR
413
Query 8209 AAFLWSIHDFMAYGV--RWSCHGI 8274
AA+LWSIHD +AYG+ W HGI
Sbjct 414 AAYLWSIHDLLAYGIFSGWCVHGI 437
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix
adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%), Gaps = 0/61 (0%)
Frame = +3
Query 23277 VSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLYG
23456
VS L TRLMA+KSK+ FS+K Y +++ LIID+ PNH +P+D+YH KKL+ GLGM Y

Sbjct 150
209
VSVLQVVTRLMAMKSKYTFSNKCYNDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQ
Query 23457 K 23459
K
Sbjct 210 K 210
>ref|NP_001143420.1| uncharacterized protein LOC100276067 precursor [Zea
mays]
gb|ACG31905.1| hypothetical protein [Zea mays]
Length=329
Score = 436 bits (1120), Expect = 6e-137, Method: Compositional matrix
adjust.
Identities = 301/303 (99%), Positives = 301/303 (99%), Gaps = 0/303 (0%)
Frame = -2
Query 97295 RHVINFAPSRAVNPASLAWDPTAQHFVVAGGGDAVLCVSDAGVTEsivssgassvavddr
97116
RHVINFAPSRAVNPASLAWDPTAQHFVVAGGGDAVLCVSDAGVTESIVSSGASSVAVDDR
Sbjct 27 RHVINFAPSRAVNPASLAWDPTAQHFVVAGGGDAVLCVSDAGVTESIVSSGASSVAVDDR
86
Query 97115 rrrllvaSPGSVSAFDLRSPRPHRLILSTPVPDPAPPGGIAVDPHTGNAFLTVGARIYKL
96936
RRRLLVASPGSVSAFDLRSPRPHRLILSTPVPDPAPPGGIAVDPHTGNAFLTVGARIYKL
Sbjct 87 RRRLLVASPGSVSAFDLRSPRPHRLILSTPVPDPAPPGGIAVDPHTGNAFLTVGARIYKL
146
Query 96935 SVEGDLATLATAPALGSEPLASLTAHVSRGFLLVGQPGTGSILRVDMEDGATRTVSCALT
96756
SVEGDLATLATAPALGSEPLASLTAHV RGFLLVGQPGTGSILRVDMEDGATRTVSCALT
Sbjct 147 SVEGDLATLATAPALGSEPLASLTAHVXRGFLLVGQPGTGSILRVDMEDGATRTVSCALT
206
Query 96755 PPTPMavavrtdgavavggaaglrlvVSNDGWASCGVRDEAAPAPDGLvaavavrerrrv
96576
PPTPMAVAVRTDGAV VGGAAGLRLVVSNDGWASCGVRDEAAPAPDGLVAAVAVRERRRV
Sbjct 207 PPTPMAVAVRTDGAVXVGGAAGLRLVVSNDGWASCGVRDEAAPAPDGLVAAVAVRERRRV
266
Query 96575 yalveaeaVNGVNKWQIEEASWKSESEGEMvvvlvfvgvalAIFMFWRFQMRQLAGNMNK
96396
YALVEAEAVNGVNKWQIEEASWKSESEGEMVVVLVFVGVALAIFMFWRFQMRQLAGNMNK
Sbjct 267 YALVEAEAVNGVNKWQIEEASWKSESEGEMVVVLVFVGVALAIFMFWRFQMRQLAGNMNK

326
Query 96395 KIR 96387
KIR
Sbjct 327 KIR 329
>ref|NP_001105370.1| starch branching enzyme1 [Zea mays]
gb|AAA82735.1| starch branching enzyme I [Zea mays]
gb|AAC36471.1| starch branching enzyme I [Zea mays]
gb|ACG32270.1| 1,4-alpha-glucan branching enzyme [Zea mays]
gb|ACN28680.1| unknown [Zea mays]
Length=823
Score = 432 bits (1112), Expect = 2e-129, Method: Compositional matrix
adjust.
Identities = 219/533 (41%), Positives = 332/533 (62%), Gaps = 16/533 (3%)
Frame = +3
Query 91206 PTISHKDKYRVYFNTPDGALERIPAWAAYVLPDAE--GKQSYAVHWEPPPEEIYKWRFGR
91379
P I H K + F ++RIPA Y DA G VHW+PP E Y ++ R
Sbjct 186 PAIPHNSKVKFRFLHGGVWVDRIPALIRYATVDASKFGAPYDGVHWDPPASERYTFKHPR
245
Query 91380 PKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIG
91559
P + RIYE HVG+SG + VS+++EF VLP I+ YN VQL+ V+EH Y+S G
Sbjct 246 PSKPAAPRIYEAHVGMSGEKPAVSTYREFADNVLPRIRANNYNTVQLMAVMEHSYYASFG
305
Query 91560 YKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADELVGLSLFD---GSN
91730
Y VTN+FAVSSR GTP+D K LVD+AH LGL VL+D++HS+AS + GL+ +D +
Sbjct 306 YHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQSTQ
365
Query 91731 DCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFHSLSSMLYTHN
91910
+ YFH+G RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SMLY H+
Sbjct 366 ESYFHAGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWLDEFMFDGFRFDGVTSMLYHHH
425
Query 91911 GFST-FTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFYPGLCEPITQG
92087
G + FTG +EY + DA++Y++LAN ++H+L P+ +AED + P LC P+ +G

Sbjct 426
485
GINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAEDVSGMPVLCRPVDEG
Query 92088 GLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSS--NQNMLSYVENHNQSISGR
92261
G+GF+Y + ++IP+ W+ +L+N + EWSM +I L + + ++Y E+H+QSI G
Sbjct 486 GVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAHTLTNRRYTEKCIAYAESHDQSIVGD
545
Query 92262 KSFAEIILNSRECSVGSVD-----DNLIRASSLLKLMKLITFTTSGGAYLNFMGNEFAHP
92426
K+ A ++++ +E G D + R +L K++ IT G YLNFMGNEF HP
Sbjct 546 KTIAFLLMD-KEMYTGMSDLQPASPTIDRGIALQKMIHFITMALGGDGYLNFMGNEFGHP
604
Query 92427 EKVEFPMPSNDYSFELANRQWELLDK--VFHKHIFNFDKDVMSLDENERIISRGPPNILH
92600
E ++FP N++S++ RQW L+D + +K++ FD+ + +LDE +S +
Sbjct 605 EWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSD
664
Query 92601 CDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEYQLIFNTDETKYGG 92759
+D VI F RG L F+FNF+P+ +++ Y+VG D G+Y++ ++D +GG
Sbjct 665 MNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDLPGKYRVALDSDALVFGG 717
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix
adjust.
Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 6/92 (7%)
Frame = +3
Query 90468 FAQFLRDRHKALKDRRWELCSRFIDLKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSL
90647
F R R K +++ + L+ S G+ G++ + + + EWAP A+ L
Sbjct 95 FKDHFRYRMKRFLEQKGSIEENEGSLESFSKGYLKFGINTNEDGTV-YREWAPAAQEAEL
153
Query 90648 IGDFNQWSPTENCAREGHLGHDDFGYWFIILE 90743
IGDFN W+ + + D FG W I ++
Sbjct 154 IGDFNDWNGANH-----KMEKDKFGVWSIKID 180
>dbj|BAA01854.1| branching enzyme-I precursor [Zea mays]
Length=822
Score =
432 bits (1112), Expect = 3e-129, Method: Compositional matrix

adjust.
Identities = 219/533 (41%), Positives = 332/533 (62%), Gaps = 16/533 (3%)
Frame = +3
Query 91206 PTISHKDKYRVYFNTPDGALERIPAWAAYVLPDAE--GKQSYAVHWEPPPEEIYKWRFGR
91379
P I H K + F ++RIPA Y DA G VHW+PP E Y ++ R
Sbjct 185 PAIPHNSKVKFRFLHGGVWVDRIPALIRYATVDASKFGAPYDGVHWDPPASERYTFKHPR
244
Query 91380 PKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIG
91559
P + RIYE HVG+SG + VS+++EF VLP I+ YN VQL+ V+EH Y+S G
Sbjct 245 PSKPAAPRIYEAHVGMSGEKPAVSTYREFADNVLPRIRANNYNTVQLMAVMEHSYYASFG
304
Query 91560 YKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADELVGLSLFD---GSN
91730
Y VTN+FAVSSR GTP+D K LVD+AH LGL VL+D++HS+AS + GL+ +D +
Sbjct 305 YHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQSTQ
364
Query 91731 DCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFHSLSSMLYTHN
91910
+ YFH+G RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SMLY H+
Sbjct 365 ESYFHAGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWLDEFMFDGFRFDGVTSMLYHHH
424
Query 91911 GFST-FTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFYPGLCEPITQG
92087
G + FTG +EY + DA++Y++LAN ++H+L P+ +AED + P LC P+ +G
Sbjct 425 GINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAEDVSGMPVLCRPVDEG
484
Query 92088 GLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSS--NQNMLSYVENHNQSISGR
92261
G+GF+Y + ++IP+ W+ +L+N + EWSM +I L + + ++Y E+H+QSI G
Sbjct 485 GVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAHTLTNRRYTEKCIAYAESHDQSIVGD
544
Query 92262 KSFAEIILNSRECSVGSVD-----DNLIRASSLLKLMKLITFTTSGGAYLNFMGNEFAHP
92426
K+ A ++++ +E G D + R +L K++ IT G YLNFMGNEF HP
Sbjct 545 KTIAFLLMD-KEMYTGMSDLQPASPTIDRGIALQKMIHFITMALGGDGYLNFMGNEFGHP
603

Query 92427 EKVEFPMPSNDYSFELANRQWELLDK--VFHKHIFNFDKDVMSLDENERIISRGPPNILH
92600
E ++FP N++S++ RQW L+D + +K++ FD+ + +LDE +S +
Sbjct 604 EWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSD
663
Query 92601 CDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEYQLIFNTDETKYGG 92759
+D VI F RG L F+FNF+P+ +++ Y+VG D G+Y++ ++D +GG
Sbjct 664 MNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDLPGKYRVALDSDALVFGG 716
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix
adjust.
Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 6/92 (7%)
Frame = +3
Query 90468 FAQFLRDRHKALKDRRWELCSRFIDLKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSL
90647
F R R K +++ + L+ S G+ G++ + + + EWAP A+ L
Sbjct 94 FKDHFRYRMKRFLEQKGSIEENEGSLESFSKGYLKFGINTNEDGTV-YREWAPAAQEAEL
152
Query 90648 IGDFNQWSPTENCAREGHLGHDDFGYWFIILE 90743
IGDFN W+ + + D FG W I ++
Sbjct 153 IGDFNDWNGANH-----KMEKDKFGVWSIKID 179
>gb|AAD11616.1| prpol [Zea mays]
Length=479
Score = 420 bits (1079), Expect = 3e-129, Method: Compositional matrix
adjust.
Identities = 229/484 (47%), Positives = 305/484 (63%), Gaps = 11/484 (2%)
Frame = +2
Query 127166 YPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITMPFGLR
127345
+PLPRID +VD+ A E +S LD YSGYHQI MK+ D+ TSFITP G YCY+ MP GL+
Sbjct 2 FPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLK
61
Query 127346 NAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGVKLNPE
127525
NAG ++ R V IGR V YVDDI+VK+ K + ++DL+ TF + G+KLNPE
Sbjct 62 NAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPE
121

Query 127526 KCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSRFISRF
127705
KCVFGV +G LG +VS +GIEANP KI AI M P KG QR+ G LA+L+RFISR
Sbjct 122 KCVFGVKKGKFLGCLVSTKGIEANPNKIEAILRMEPPTTRKGAQRLTGRLASLNRFISRS
181
Query 127706 GERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVATTQVV
127885
ER LP + +L+ A+ F P ++A LK L + L PP G LL+YV A+ V
Sbjct 182 RERNLPFFEVLKSAKVFQWGPSQQKAFEELKQYLIDLTTLTPPMPGAPLLLYVAASHSAV
241
Query 127886 SAAIVVERREEGHALPVQRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHP
128065
SAA+V E+ + L PVYF+SEVLS +K Y +++K+LYAV++ RKLRHYF+++
Sbjct 242 SAALVQEKLD--GQLKKLVPVYFVSEVLSVSKKNYTELEKVLYAVLMASRKLRHYFQAYN
299
Query 128066 VIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT*LP
128245
+IV SS PL +I++ REA+GRI K A E+ I + R +I+SQ LADF+A W P
Sbjct 300 IIVPSSQPLKDIMRNREATGRIGKWAAELNEFYIDYVHRSSIQSQALADFIAVWT----P
355
Query 128246 IAPIQ-----PELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEA
128410
A + E+WT+F DGS GAGA + +SP Y RL F +NN+A+YEA
Sbjct 356 GAQDEEANKDAEVWTVFCDGSWGIFGAGAAAVLVSPSKVKTCYAARLDFSCTNNIAEYEA
415
Query 128411 LVNGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELN
128590
L+ GL +G+RR + DSQ+V V K+ +DPK+E Y D VRR+E F G +
Sbjct 416 LLLGLRKLKAMGIRRAILKTDSQVVSGHVDKSCKAKDPKLEKYLDTVRRIEASFEGFSVK
475
Query 128591 HIAR 128602
+I R
Sbjct 476 NIPR 479
Score = 267 bits (683), Expect(2) = 7e-117, Method: Compositional
matrix adjust.
Identities = 151/248 (61%), Positives = 183/248 (74%), Gaps = 0/248 (0%)
Frame = +3

Query 147162 MKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKTVLESQVGRNIFMYVDDIVVA
147341
MK+ED+ TSFITP GTYC++RMPEGLKNAG +FSR+T VL+SQ+GRN+ YVDDI+V
Sbjct 34 MKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVK
93
Query 147342 SKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKILGYLVSHRGIEANPTKIQAII
147521
S +E+H+ADL ETF + R A L+LNPEKCVFGV++GK LG LVS +GIEANP KI+AI+
Sbjct 94 STKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPNKIEAIL
153
Query 147522 NMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLRGAKDFTWGSEQATAFTSLKQ
147701
M PP + Q LTGRLA+LNRFIS+S ER+LPF + L+ AK F WG Q AF LKQ
Sbjct 154 RMEPPTTRKGAQRLTGRLASLNRFISRSRERNLPFFEVLKSAKVFQWGPSQQKAFEELKQ
213
Query 147702 HLSELAIltspdsllplllyvaaslhavsaalv*EQDREGTT*QCPVYYVSEVLTTSKCN
147881
+L +L LT P PLLLYVAAS AVSAALV E+ PVY+VSEVL+ SK N
Sbjct 214 YLIDLTTLTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQLKKLVPVYFVSEVLSVSKKN
273
Query 147882 MTKLEKTF 147905
T+LEK
Sbjct 274 YTELEKVL 281
Score = 179 bits (454), Expect(2) = 7e-117, Method: Compositional
matrix adjust.
Identities = 98/202 (49%), Positives = 141/202 (70%), Gaps = 8/202 (4%)
Frame = +1
Query 147907 YAVVMASRKLRQYFEAFKVRVTSDRGLGELFRNPEASV*IAKWAAKLSGYHITFEPRTTI
148086
YAV+MASRKLR YF+A+ + V S + L ++ RN EA+ I KWAA+L+ ++I + R++I
Sbjct 282 YAVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFYIDYVHRSSI
341
Query 148087 K*QVLVDFIVDWTGPTRQQEEPSE--KVWTIHCDDAWCHagagaaaiiTSPTCVKHRYVA
148260
+ Q L DFI WT P Q EE ++ +VWT+ CD +W GAGAAA++ SP+ VK Y A
Sbjct 342 QSQALADFIAVWT-PGAQDEEANKDAEVWTVFCDGSWGIFGAGAAAVLVSPSKVKTCYAA
400

Query 148261 RLSFALESDRCTNNIAEYEVVILGLRKLRALGVTTCIVKTDSKVIAGQVEKEYLTKDPAL
148440
RL F+ CTNNIAEYE ++LGLRKL+A+G+ I+KTDS+V++G V+K KDP L
Sbjct 401 RLDFS-----CTNNIAEYEALLLGLRKLKAMGIRRAILKTDSQVVSGHVDKSCKAKDPKL
455
Query 148441 MQYLTAVRSLEIQFKGLTLQHM 148506
+YL VR +E F+G +++++
Sbjct 456 EKYLDTVRRIEASFEGFSVKNI 477
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix
adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (9%)
Frame = +2
Query 147065 FPLLRIDKIVDSAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF------HHTLRHVLLHQ
147226
FPL RID +VD+AA E+MSL+DC+S YHQI+ + + + F + LR +
Sbjct 2 FPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLK
61
Query 147227 DAGGTQER 147250
+AGG+ R
Sbjct 62 NAGGSFSR 69
>gb|ABQ15209.1| starch branching enzyme I [Zea mays]
Length=823
Score = 429 bits (1104), Expect = 3e-128, Method: Compositional matrix
adjust.
Identities = 218/533 (41%), Positives = 331/533 (62%), Gaps = 16/533 (3%)
Frame = +3
Query 91206 PTISHKDKYRVYFNTPDGALERIPAWAAYVLPDAE--GKQSYAVHWEPPPEEIYKWRFGR
91379
P I H K + F ++RIPA Y DA G VHW+PP E Y ++ R
Sbjct 186 PAIPHNSKVKFRFLHGGVWVDRIPALIRYATVDASKFGAPYDGVHWDPPASERYTFKHPR
245
Query 91380 PKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIG
91559
P + RIYE HVG+SG + VS+++EF VLP I+ YN VQL+ V+EH Y+S G
Sbjct 246 PSKPAAPRIYEAHVGMSGEKPAVSTYREFADNVLPRIRANNYNTVQLMAVMEHSYYASFG

305
Query 91560 YKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADELVGLSLFD---GSN
91730
Y VTN+FAVSSR GTP+D K LVD+AH LGL VL+D++HS+AS + GL+ +D +
Sbjct 306 YHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQSTQ
365
Query 91731 DCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFHSLSSMLYTHN
91910
+ YFH+G RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SMLY H+
Sbjct 366 ESYFHAGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWLDEFMFDGFRFDGVTSMLYHHH
425
Query 91911 GFST-FTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFYPGLCEPITQG
92087
G + FTG +EY + DA++Y++LAN ++H+L P+ +A D + P LC P+ +G
Sbjct 426 GINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAGDVSRMPVLCRPVDEG
485
Query 92088 GLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSS--NQNMLSYVENHNQSISGR
92261
G+GF+Y + ++IP+ W+ +L+N + EWSM +I L + + ++Y E+H+QSI G
Sbjct 486 GVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAHTLTNRRYTEKCIAYAESHDQSIVGD
545
Query 92262 KSFAEIILNSRECSVGSVD-----DNLIRASSLLKLMKLITFTTSGGAYLNFMGNEFAHP
92426
K+ A ++++ +E G D + R +L K++ IT G YLNFMGNEF HP
Sbjct 546 KTIAFLLMD-KEMYTGMSDLQPASPTIDRGIALQKMIHFITMALGGDGYLNFMGNEFGHP
604
Query 92427 EKVEFPMPSNDYSFELANRQWELLDK--VFHKHIFNFDKDVMSLDENERIISRGPPNILH
92600
E ++FP N++S++ RQW L+D + +K++ FD+ + +LDE +S +
Sbjct 605 EWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSD
664
Query 92601 CDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEYQLIFNTDETKYGG 92759
+D VI F RG L F+FNF+P+ +++ Y+VG D G+Y++ ++D +GG
Sbjct 665 MNDEEKVIVFERGDLVFVFNFHPKKTYEGYKVGCDLPGKYRVALDSDALVFGG 717
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix
adjust.
Identities = 21/67 (31%), Positives = 34/67 (51%), Gaps = 6/67 (9%)

Frame = +3
Query 90543 LKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFG
90722
L+ S G+ G++ + + + EWAP A+ LIGDFN W+ + + D FG
Sbjct 120 LESFSKGYLKFGINTNEDGTV-YREWAPAAQEAELIGDFNDWNGANH-----KMEKDKFG
173
Query 90723 YWFIILE 90743
W I ++
Sbjct 174 VWSIKID 180
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch
polyprotein [Zea
mays]
Length=1313
Score = 443 bits (1139), Expect = 3e-128, Method: Compositional matrix
adjust.
Identities = 224/515 (43%), Positives = 328/515 (64%), Gaps = 3/515 (1%)
Frame = -2
Query 82211 FVSCVEPNRVDEALLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNK
82032
F S EP ++EAL DV+W +AM E + +N+ W LV K NVIG KWV++ K
Sbjct 799 FTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKA
858
Query 82031 DGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAF
81852
DG + R KARLVA+GY Q G+D+ +TF+PV + IRI+L+ A + L Q+DV++AF
Sbjct 859 DGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAF
918
Query 81851 LNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGK
81672
L+G + E VY++QPPG+ED + N+V KL KALYGLKQAPRAWY RL + LLS F+ K
Sbjct 919 LHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASK
978
Query 81671 VDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQ
81492
DT+LF G +YVDDII S+ E ++KEF + +G+L++FLG++
Sbjct 979 ADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIE
1038

Query 81491 IKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKL--YRSI
81318
+ +++DGI ++Q KY D+LKK G+ + KPI TP++T+ L + EG + ++ + YRSI
Sbjct 1039 VNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSI
1098
Query 81317 IGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFE
81138
+G+L Y+T +RPD+ FSV +F +P +H A KRILRY+K N+GL +
Sbjct 1099 VGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTL
1158
Query 81137 LIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQL
80958
+ +SD+D+AG DRKST G FLG +LVSWS++KQ +V+ S+ E+EY + N A+L
Sbjct 1159 VSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAEL
1218
Query 80957 LWMKQTLLDYEIIF-KNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDIS
80781
+W++ L + I + L CDN A L+ NP+ H+RTKHI++ +HF+RD V K +
Sbjct 1219 IWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLD
1278
Query 80780 IYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDI 80676
I + T DQ+AD FTKPL + + +N+ +
Sbjct 1279 IEYVPTGDQVADGFTKPLSVRLLENFKVNLNLTRL 1313
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix
adjust.
Identities = 153/463 (33%), Positives = 249/463 (54%), Gaps = 12/463 (3%)
Frame = +1
Query 141442 RNEVWSLVPHPKQKRCRNQVCVPQQKRRV-WSGDKEQRSACGKRLCPSHRFGL**D--FS
141612
+N+ W LVP K + V + KR+ S D+ + K ++G+ D FS
Sbjct 830 KNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGY--KQQYGIDYDDTFS
887
Query 141613 PVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVYKL
141792
PV + + I+L+ A + L Q+DV+NAFL+G ++EEVY+++ P +E+ N+V KL
Sbjct 888 PVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKL
947

Query 141793 SKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFGST
141972
KALY LK+AP WY L + L+S F+ K +LF + VDDII S+
Sbjct 948 DKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASS
1007
Query 141973 NQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKDAK
142152
K+ E + +++ + +G+LNYFL +V +++D ++Q KY D+LK + D K
Sbjct 1008 THKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCK
1067
Query 142153 PIKTLMGTNGHLDL----DIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSD
142320
PI T + T+ L + +G K + Q RS++G+L YL ++R I SV +F
Sbjct 1068 PISTPLSTSEKLSIHEGSPLGEKDITQY--RSIVGALQYLTLTRPDIAFSVNKVCQFLHA
1125
Query 142321 AKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLG
142500
H VK+ILRY+ + L + + + + D D+ DRKST +FLG
Sbjct 1126 PTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLG
1185
Query 142501 RSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVP-LLCDNKSA
142677
+LVSWS+++Q V+ S+T+++Y + +L+ ++ L + + L CDN A
Sbjct 1186 SNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGA
1245
Query 142678 IRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL 142806
L NPI H+RTKHI++ +HF+RD ++ ++I +V T Q+
Sbjct 1246 KYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQV 1288
>gb|AAO20100.1| starch branching enzyme I [Zea mays]
Length=823
Score = 429 bits (1103), Expect = 4e-128, Method: Compositional matrix
adjust.
Identities = 218/533 (41%), Positives = 331/533 (62%), Gaps = 16/533 (3%)
Frame = +3
Query 91206 PTISHKDKYRVYFNTPDGALERIPAWAAYVLPDAE--GKQSYAVHWEPPPEEIYKWRFGR
91379

Sbjct 186
245
P I H K + F ++RIPA Y DA G VHW+PP E Y ++ R
PAIPHNSKVKFRFLHGGVWVDRIPALIRYATVDASKFGAPYDGVHWDPPASERYTFKHPR
Query 91380 PKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIG
91559
P + RIYE HVG+SG + VS+++EF VLP I+ YN VQL+ V+EH Y+S G
Sbjct 246 PSKPAAPRIYEAHVGMSGEKPAVSTYREFADNVLPRIRANNYNTVQLMAVMEHSYYASFG
305
Query 91560 YKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADELVGLSLFD---GSN
91730
Y VTN+FAVSSR GTP+D K LVD+AH LGL VL+D++HS+AS + GL+ +D +
Sbjct 306 YHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQSTQ
365
Query 91731 DCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFHSLSSMLYTHN
91910
+ YFH+G RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SMLY H+
Sbjct 366 ESYFHAGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWLDEFMFDGFRFDGVTSMLYHHH
425
Query 91911 GFST-FTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFYPGLCEPITQG
92087
G + FTG +EY + DA++Y++LAN ++H+L P+ +AED + P LC P+ +G
Sbjct 426 GINVGFTGNYQEYFSLDTAVDAVVYMMLANHLMHKLLPEATVVAEDVSGMPVLCRPVDEG
485
Query 92088 GLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSS--NQNMLSYVENHNQSISGR
92261
G+GF+Y + ++IP+ W+ +L+N + EWSM +I L + + ++Y E+H+QSI G
Sbjct 486 GVGFDYRLAMAIPDRWIDYLKNKDDSEWSMGEIAHTLTNRRYTEKCIAYAESHDQSIVGD
545
Query 92262 KSFAEIILNSRECSVGSVD-----DNLIRASSLLKLMKLITFTTSGGAYLNFMGNEFAHP
92426
K+ A ++++ +E G D + R +L K++ IT G YLNFMGNEF HP
Sbjct 546 KTIAFLLMD-KEMYTGMSDLQPASPTIDRGIALQKMIHFITMALGGDGYLNFMGNEFGHP
604
Query 92427 EKVEFPMPSNDYSFELANRQWELLDK--VFHKHIFNFDKDVMSLDENERIISRGPPNILH
92600
E ++FP N++S++ RQW L+D + +K++ FD+ + +LDE +S +
Sbjct 605 EWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALDERFSFLSSSKQIVSD
664

Query 92601 CDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEYQLIFNTDETKYGG 92759
+D VI F R L F+FNF+P+ +++ Y+VG D G+Y++ ++D +GG
Sbjct 665 MNDEEKVIVFEREDLVFVFNFHPKKTYEGYKVGCDLPGKYRVALDSDALVFGG 717
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix
adjust.
Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 6/92 (7%)
Frame = +3
Query 90468 FAQFLRDRHKALKDRRWELCSRFIDLKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSL
90647
F R R K +++ + L+ S G+ G++ + + + EWAP A+ L
Sbjct 95 FKDHFRYRMKRFLEQKGSIEENEGSLESFSKGYLKFGINTNEDGTV-YREWAPAAQEAEL
153
Query 90648 IGDFNQWSPTENCAREGHLGHDDFGYWFIILE 90743
IGDFN W+ + + D FG W I ++
Sbjct 154 IGDFNDWNGANH-----KMEKDKFGVWSIKID 180
>gb|AAP94593.1| putative retrotransposon protein [Zea mays]
Length=378
Score = 407 bits (1047), Expect = 2e-126, Method: Compositional matrix
adjust.
Identities = 185/271 (68%), Positives = 218/271 (80%), Gaps = 1/271 (0%)
Frame = -1
Query 40797 GFLIAMSKTNTEKITKEILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHSVYGKSTIKE
40618
GF AM KTNTEKIT EIL GLSED+GDSES+D++SG ED+EDRPWRPSH+++GKSTIK+
Sbjct 14 GFYEAMEKTNTEKITNEILAGLSEDSGDSESFDLESGNEDAEDRPWRPSHTMFGKSTIKQ
73
Query 40617 NHLVNMRGRYFRDLSVVRADEGEKTCPHPEENEVVVFRSFLKAGLRLPLSSFVVEVLKIF
40438
+ + M+GRYFRD+S+VRA G+ T P PE +EVVV+RSF+KAGL+ LS F+VEVLK F
Sbjct 74 SRIDAMKGRYFRDISIVRA-AGDSTAPAPEVDEVVVYRSFMKAGLQFSLSKFLVEVLKTF
132
Query 40437 EVYLHQLTPEAIIRLNIFVWAVRSQGLKPDAKSFCNMHELSYETIPWGKEQYHNNFGCYS
40258
E+YLHQ+TPEAIIR+ IF+WA+RSQGL+P AK FCNMHEL YET GKEQYHNNFGCY
Sbjct 133 EIYLHQITPEAIIRMGIFIWAMRSQGLEPSAKCFCNMHELFYETKATGKEQYHNNFGCYG
192

Query 40257 FVSRSGSSCPVPTFRKRWPSGWMTEWFYVKNDLKAREDIKGIIMRPIWQSFGLRRPKVEM
40078
FV RS S PVPTFRKRWP WM EWFYVKN+L REDIKGII IW FG+ P +
Sbjct 193 FVPRSDVSYPVPTFRKRWPGAWMEEWFYVKNNLVEREDIKGIIQCTIWCRFGISMPATAL
252
Query 40077 NEAAEECQRAFGVVCSFIGTRDLVQEHIAFR 39985
E CQ+AF +C+FIGTRDLVQEHIA+R
Sbjct 253 GNEIEACQKAFNSLCTFIGTRDLVQEHIAYR 283
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix
adjust.
Identities = 23/34 (68%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
Frame = -1
Query 39618 KKIKVLTHRPRYIEPASVPEFTGKTSSATEAEKP 39517
KKIK LTHRPRYIE SVP+ T SSA E E P
Sbjct 301 KKIKNLTHRPRYIETTSVPKLTEGPSSAVEPELP 334
>gb|ACF87376.2| unknown [Zea mays]
Length=526
Score = 414 bits (1063), Expect = 2e-126, Method: Compositional matrix
adjust.
Identities = 204/504 (40%), Positives = 299/504 (59%), Gaps = 1/504 (0%)
Frame = -2
Query 82193 PNRVDEALLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVR
82014
P AL D W NAM +E N W LV +P NV+ KW+FR+K + DG + R
Sbjct 15 PYSYRTALTDPHWYNAMLEEFQALMTNNTWSLVPKPAGANVVSGKWIFRHKLHSDGSLAR
74
Query 82013 NKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKIS
81834
KAR V +G +Q EG+D+GETF+PV + IR +L+ A + + ++Q+DVK+AFL+G +S
Sbjct 75 YKARWVVRGCSQQEGIDYGETFSPVIKPGTIRSVLSIATSFSWPIHQLDVKNAFLHGTLS
134
Query 81833 ELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLF
81654
E VY +QP F DP P+HV KL K+LYGLKQAPR W+ R FL S F K D +LF
Sbjct 135 ETVYSQQPSDFVDPSLPHHVCKLHKSLYGLKQAPRTWFLRFTTFLSSIGFTQSKCDPSLF

194
Query 81653 TKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKD
81474
+ +YVDDII + + EF MS +G L FLG+++
Sbjct 195 ILKTPSTTAYLLLYVDDIILTANTSHLLSHIISQLCSEFSMSDLGPLRHFLGIEVTPSDT
254
Query 81473 GIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYIT
81294
G+ +SQ +Y D+L + + + P TP+ TN +G + +YRS+ G+L Y+T
Sbjct 255 GLVLSQKQYALDILARANMTHCNPCHTPVDTNSKPASTDGCLLSQPTVYRSLAGALQYLT
314
Query 81293 ASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSD
81114
+RPD+ ++V F +PR+ H+ KRILRY++ T + GL + + +L+ YSD+D
Sbjct 315 LTRPDISYAVQQVCLFMHAPRDTHMSLLKRILRYVRGTLDYGLHIYRSSSLDLLAYSDAD
374
Query 81113 YAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLL
80934
+AGC R+STSG C FLG +LV+WSSK+Q++V+ S+AEAEY N A++ W++Q L
Sbjct 375 WAGCPDTRRSTSGYCVFLGANLVAWSSKRQHTVSRSSAEAEYRGVANAVAEICWLRQLLT
434
Query 80933 DY-EIIFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDD
80757
+ + + CDN S + LA+NPVQH RTKH++I HF+R+ V G++ + + +
Sbjct 435 ELCHPPRRAAVVFCDNVSTMYLASNPVQHQRTKHVEIDLHFVRERVSLGEVKVIHVPSSL
494
Query 80756 QLADIFTKPLDETRFCSLRSEMNV 80685
Q ADIFTK L + F RS + +
Sbjct 495 QFADIFTKGLSSSLFKEFRSNLQI 518
Score = 219 bits (559), Expect = 4e-60, Method: Compositional matrix
adjust.
Identities = 145/463 (31%), Positives = 229/463 (49%), Gaps = 7/463 (2%)
Frame = +1
Query 141445 NEVWSLVPHPKQKRCRNQVCVPQQKRRVWSGDKEQRSACGKRLCPSHR---FGL**DFSP
141615
N WSLVP P + + + K ++ R C +G FSP
Sbjct 41 NNTWSLVPKPAGANVVSGKWIFRHKLHSDGSLARYKARWVVRGCSQQEGIDYGE--TFSP

98
Query 141616 VARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVYKLS
141795
V + + +L+ AT +S+ + Q+DVKNAFL+G + E VY ++ F + P+HV KL
Sbjct 99 VIKPGTIRSVLSIATSFSWPIHQLDVKNAFLHGTLSETVYSQQPSDFVDPSLPHHVCKLH
158
Query 141796 KALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFGSTN
141975
K+LY LK+AP TW+ FL S F K +LF + VDDII +
Sbjct 159 KSLYGLKQAPRTWFLRFTTFLSSIGFTQSKCDPSLFILKTPSTTAYLLLYVDDIILTANT
218
Query 141976 QKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKDAKP
142155
+ ++ MS +G L +FL +V +SQ +Y DIL + P
Sbjct 219 SHLLSHIISQLCSEFSMSDLGPLRHFLGIEVTPSDTGLVLSQKQYALDILARANMTHCNP
278
Query 142156 IKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQSDAKECH
142335
T + TN G + RS+ G+L YL ++R I +V F ++ H
Sbjct 279 CHTPVDTNSKPASTDGCLLSQPTVYRSLAGALQYLTLTRPDISYAVQQVCLFMHAPRDTH
338
Query 142336 LRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGRSLVS
142515
+ ++K+ILRY+ T + L + S+ DL+ Y D D+ R+STS C+FLG +LV+
Sbjct 339 MSLLKRILRYVRGTLDYGLHIYRSSSLDLLAYSDADWAGCPDTRRSTSGYCVFLGANLVA
398
Query 142516 WSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLL-CDNKSAIRLVD
142692
WSSKRQ+ V+ S+ +A+Y + ++ +RQ L + + ++ CDN S + L
Sbjct 399 WSSKRQHTVSRSSAEAEYRGVANAVAEICWLRQLLTELCHPPRRAAVVFCDNVSTMYLAS
458
Query 142693 NPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFS 142818
NP++H RTKH++I HF+R+ ++++ HV + Q DIF+
Sbjct 459 NPVQHQRTKHVEIDLHFVRERVSLGEVKVIHVPSSLQFADIFT 501
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix
adjust.
Identities = 18/43 (42%), Positives = 25/43 (58%), Gaps = 0/43 (0%)

Frame = +2
Query 141482 NVVGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
NVV K +F +K G + R K R V +G +Q G+D+ ETF
Sbjct 54 NVVSGKWIFRHKLHSDGSLARYKARWVVRGCSQQEGIDYGETF 96
>gb|AAB67316.1| starch branching enzyme IIa [Zea mays]
Length=814
Score = 419 bits (1078), Expect = 6e-125, Method: Compositional matrix
adjust.
Identities = 222/577 (38%), Positives = 349/577 (60%), Gaps = 26/577 (5%)
Frame = +3
Query 91206 PTISHKDKYRVYFNTPDGALERIPAWAAYVLPDAEGKQSY-AVHWEPPPEEIYKWRFGRP
91382
P I H + ++ +TP G + IPAW + + A G+ Y ++++PP EE Y ++ +P
Sbjct 234 PAIPHGSRVKIRMDTPSGVKDSIPAWIKFSV-QAPGEIPYNGIYYDPPEEEKYVFKHPQP
292
Query 91383 KVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAGYNAVQLIGVVEHKDYSSIGY
91562
K SLRIYE HVG+S E K++++ F +VLP IKK GYNAVQ++ + EH Y+S GY
Sbjct 293 KRPKSLRIYESHVGMSSPEPKINTYANFRDEVLPRIKKLGYNAVQIMAIQEHSYYASFGY
352
Query 91563 KVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADELVGLSLFDGSNDCYF
91742
VTN+FA SSRFGTP+D K L+D+AH LGL+VL+DI+HS++S + L GL+ FDG++ YF
Sbjct 353 HVTNFFAPSSRFGTPEDLKSLIDKAHELGLLVLMDIVHSHSSNNTLDGLNGFDGTDTHYF
412
Query 91743 HSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFHSLSSMLYTHNGFS-
91919
H G RGHH W +R+F Y +VL FLLSN WW+ EY+ DGF+F ++SM+YTH+G
Sbjct 413 HGGPRGHHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV
472
Query 91920 TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFYPGLCEPITQGGLGF
92099
TFTG EY D DA++YL+L N+++ L+P+ V+I ED + P C P+ GG+GF
Sbjct 473 TFTGNYGEYFGFATDVDAVVYLMLVNDLIRGLYPEAVSIGEDVSGMPTFCIPVQDGGVGF
532
Query 92100 NYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--QNMLSYVENHNQSISGRKSFA

92273
Sbjct 533
591
+Y +++++P+ W+ L+ E W M I+ L + + ++Y E+H+Q++ G K+ A
DYRLHMAVPDKWIELLKQSDEY-WEMGDIVHTLTNRRWLEKCVTYCESHDQALVGDKTIA
Query 92274 EIILNSRECSVGSVD----DNLIRASSLLKLMKLITFTTSGGAYLNFMGNEFAHPEKVEF
92441
+++ ++D + R +L K+++L+T G YLNFMGNEF HPE ++F
Sbjct 592 FWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEWIDF
651
Query 92442 P-----------MPSNDYSFELANRQWELLDKVF--HKHIFNFDKDVMSLDENERIISRG
92582
P +P N+ SF+ R+++L D + ++ + FD+ + L+ ++
Sbjct 652 PRGPQSLPNGSVIPGNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEGKYEFMTSD
711
Query 92583 PPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEYQLIFNTDETKYGGC
92762
+ + VI F RG L F+FNF+ S+ YRVG + G+Y+++ ++D+ +GG
Sbjct 712 HSYVSRKHEEDKVIIFERGDLVFVFNFHWSNSYFDYRVGCFKPGKYKIVLDSDDGLFGGF
771
Query 92763 ETLK-SSQYMRRTSDKRADGCRNSLELALPSRSAQIY 92870
L ++Y T+D D S + PSR+A +Y
Sbjct 772 SRLDHDAEYF--TADWPHDNRPCSFSVYAPSRTAVVY 806
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix
adjust.
Identities = 30/92 (33%), Positives = 43/92 (47%), Gaps = 6/92 (7%)
Frame = +3
Query 90465 AFAQFLRDRHKALKDRRWELCSRFIDLKEASSGFELLGMHRHRQHRIDFMEWAPGARYCS
90644
F L R+ K R + L S G+E LG R + I + EWAPGA +
Sbjct 141 GFRGHLDYRYSEYKRLRAAIDQHEGGLDAFSRGYEKLGFTRSAEG-ITYREWAPGAYSAA
199
Query 90645 LIGDFNQWSPTENCAREGHLGHDDFGYWFIIL 90740
L+GDFN W+P + + +++G W I L
Sbjct 200 LVGDFNNWNPNADA-----MARNEYGVWEIFL 226
>gb|AAB33385.1| branching enzyme II BEII [Zea mays, cultivar B73,
endosperms,

Peptide, 738 aa]
Length=738
Score = 414 bits (1063), Expect = 8e-124, Method: Compositional matrix
adjust.
Identities = 223/599 (37%), Positives = 350/599 (58%), Gaps = 31/599 (5%)
Frame = +3
Query 91167 MRKGRIAWLEKYVPT-------ISHKDKYRVYFNTPDGALERIPAWAAYVLPDAEGKQSY
91325
M K E ++P I H + +V +TP G + IPAW Y + A G+ Y
Sbjct 142 MSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKYSV-QAPGEIPY
200
Query 91326 -AVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAG
91502
++++PP E Y +R +PK SLRIYE HVG+S E K++++ F +VLP IKK G
Sbjct 201 DGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRDEVLPRIKKLG
260
Query 91503 YNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSY
91682
YNAVQ++ + EH Y S GY VTN+FA SSRFGTP++ K L+D AH LGL+VL+D++HS+
Sbjct 261 YNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDVVHSH
320
Query 91683 ASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRI
91862
AS++ L GL+ FDG++ YFHSG RGHH W +R+F Y + +VL FLLSN WW+ EY+
Sbjct 321 ASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKF
380
Query 91863 DGFQFHSLSSMLYTHNGFS-TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIA
92039
DGF+F ++SM+YTH+G TFTG EY D DA++YL+L N+++H L+P+ VTI
Sbjct 381 DGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIG
440
Query 92040 EDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--Q
92213
ED + P P+ GG+GF+Y +++++ + W+ L ++ W M I+ L + +
Sbjct 441 EDVSGMPTFALPVHDGGVGFDYRMHMAVADKWI-DLLKQSDETWKMGDIVHTLTNRRWLE
499
Query 92214 NMLSYVENHNQSISGRKSFAEIILNSRECSVGSVD----DNLIRASSLLKLMKLITFTTS
92381

Sbjct 500
559
++Y E+H+Q++ G K+ A +++ ++D + R +L K+++LIT
KCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLG
Query 92382 GGAYLNFMGNEFAHPEKVEFP-----------MPSNDYSFELANRQWELLDKVFHKH--I
92522
G YLNFMGNEF HPE ++FP +P N+ S++ R+++L D + ++ +
Sbjct 560 GEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGM
619
Query 92523 FNFDKDVMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGV
92702
FD+ + L++ ++ I + VI F +G L F+FNF+ S+ YR+G
Sbjct 620 QEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGC
679
Query 92703 DEAGEYQLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLV
92879
+ G Y+++ ++D +GG + + T+D D S + PSR+ +Y V
Sbjct 680 RKPGVYKVVLDSDAGLFGGFSRIHHAA-EHFTADCSHDNRPYSFSVYTPSRTCVVYAPV
737
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix
adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +3
Query 90543 LKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFG
90722
L+ S +E G +R + I + EWAPGA +L+GDFN W P + + ++FG
Sbjct 95 LEAFSRSYEKFGFNRSAE-GITYREWAPGAFSAALVGDFNNWDPNAD-----RMSKNEFG
148
Query 90723 YWFIIL 90740
W I L
Sbjct 149 VWEIFL 154
>ref|NP_001105316.1| 1,4-alpha-glucan-branching enzyme 2, chloroplastic/
amyloplastic
precursor [Zea mays]
sp|Q08047.1|GLGB_MAIZE RecName: Full=1,4-alpha-glucan-branching enzyme 2,
chloroplastic/amyloplastic;
AltName: Full=Q-enzyme; AltName: Full=Starch-branching
enzyme IIB; Flags: Precursor

gb|AAA18571.1| starch branching enzyme II [Zea mays]
Length=799
Score = 415 bits (1067), Expect = 1e-123, Method: Compositional matrix
adjust.
Identities = 224/599 (37%), Positives = 350/599 (58%), Gaps = 31/599 (5%)
Frame = +3
Query 91167 MRKGRIAWLEKYVPT-------ISHKDKYRVYFNTPDGALERIPAWAAYVLPDAEGKQSY
91325
M K E ++P I H + +V +TP G + IPAW Y + A G+ Y
Sbjct 203 MSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKYSV-QAPGEIPY
261
Query 91326 -AVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAG
91502
++++PP E Y +R +PK SLRIYE HVG+S E K++++ F +VLP IKK G
Sbjct 262 DGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRDEVLPRIKKLG
321
Query 91503 YNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSY
91682
YNAVQ++ + EH Y S GY VTN+FA SSRFGTP+D K L+D AH LGL+VL+D++HS+
Sbjct 322 YNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDVVHSH
381
Query 91683 ASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRI
91862
AS++ L GL+ FDG++ YFHSG RGHH W +R+F Y + +VL FLLSN WW+ EY+
Sbjct 382 ASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKF
441
Query 91863 DGFQFHSLSSMLYTHNGFS-TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIA
92039
DGF+F ++SM+YTH+G TFTG EY D DA++YL+L N+++H L+P+ VTI
Sbjct 442 DGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIG
501
Query 92040 EDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--Q
92213
ED + P P+ GG+GF+Y +++++ + W+ L ++ W M I+ L + +
Sbjct 502 EDVSGMPTFALPVHDGGVGFDYRMHMAVADKWI-DLLKQSDETWKMGDIVHTLTNRRWLE
560
Query 92214 NMLSYVENHNQSISGRKSFAEIILNSRECSVGSVD----DNLIRASSLLKLMKLITFTTS
92381

Sbjct 561
620
++Y E+H+Q++ G K+ A +++ ++D + R +L K+++LIT
KCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLG
Query 92382 GGAYLNFMGNEFAHPEKVEFP-----------MPSNDYSFELANRQWELLDKVFHKH--I
92522
G YLNFMGNEF HPE ++FP +P N+ S++ R+++L D + ++ +
Sbjct 621 GEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGM
680
Query 92523 FNFDKDVMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGV
92702
FD+ + L++ ++ I + VI F +G L F+FNF+ S+ YR+G
Sbjct 681 QEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGC
740
Query 92703 DEAGEYQLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLV
92879
+ G Y+++ ++D +GG + + T+D D S + PSR+ +Y V
Sbjct 741 RKPGVYKVVLDSDAGLFGGFSRIHHAA-EHFTADCSHDNRPYSFSVYTPSRTCVVYAPV
798
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix
adjust.
Identities = 22/69 (32%), Positives = 34/69 (49%), Gaps = 6/69 (9%)
Frame = +3
Query 90543 LKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFG
90722
L+ S +E G + + I + EWAPGA +L+GD N W P + + ++FG
Sbjct 156 LEAFSRSYEKFGFNASAE-GITYREWAPGAFSAALVGDVNNWDPNAD-----RMSKNEFG
209
Query 90723 YWFIILEDK 90749
W I L +
Sbjct 210 VWEIFLPNN 218
>gb|AAC33764.1| starch branching enzyme IIb [Zea mays]
Length=799
Score = 413 bits (1062), Expect = 5e-123, Method: Compositional matrix
adjust.
Identities = 223/599 (37%), Positives = 350/599 (58%), Gaps = 31/599 (5%)
Frame = +3

Query 91167 MRKGRIAWLEKYVPT-------ISHKDKYRVYFNTPDGALERIPAWAAYVLPDAEGKQSY
91325
M K E ++P I H + +V +TP G + IPAW Y + A G+ Y
Sbjct 203 MSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKYSV-QAPGEIPY
261
Query 91326 -AVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAG
91502
++++PP E Y +R +PK SLRIYE HVG+S E K++++ F +VLP IKK G
Sbjct 262 DGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRDEVLPRIKKLG
321
Query 91503 YNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSY
91682
YNAVQ++ + EH Y S GY VTN+FA SSRFGTP++ K L+D AH LGL+VL+D++HS+
Sbjct 322 YNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDVVHSH
381
Query 91683 ASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRI
91862
AS++ L GL+ FDG++ YFHSG RGHH W +R+F Y + +VL FLLSN WW+ EY+
Sbjct 382 ASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKF
441
Query 91863 DGFQFHSLSSMLYTHNGFS-TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIA
92039
DGF+F ++SM+YTH+G TFTG EY D DA++YL+L N+++H L+P+ VTI
Sbjct 442 DGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIG
501
Query 92040 EDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--Q
92213
ED + P P+ GG+GF+Y +++++ + W+ L ++ W M I+ L + +
Sbjct 502 EDVSGMPTFALPVHDGGVGFDYRMHMAVADKWI-DLLKQSDETWKMGDIVHTLTNRRWLE
560
Query 92214 NMLSYVENHNQSISGRKSFAEIILNSRECSVGSVD----DNLIRASSLLKLMKLITFTTS
92381
++Y E+H+Q++ G K+ A +++ ++D + R +L K+++LIT
Sbjct 561 KCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLG
620
Query 92382 GGAYLNFMGNEFAHPEKVEFP-----------MPSNDYSFELANRQWELLDKVFHKH--I
92522
G YLNFMGNEF HPE ++FP +P N+ S++ R+++L D + ++ +

Sbjct 621
680
GEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGM
Query 92523 FNFDKDVMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGV
92702
FD+ + L++ ++ I + VI F +G L F+FNF+ S+ YR+G
Sbjct 681 QEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGC
740
Query 92703 DEAGEYQLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLV
92879
+ G Y+++ ++D +GG + + T+D D S + PSR+ +Y V
Sbjct 741 RKPGVYKVVLDSDAGLFGGFSRIHHAA-EHFTADCSHDNRPYSFSVYTPSRTCVVYAPV
798
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix
adjust.
Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 6/69 (9%)
Frame = +3
Query 90543 LKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFG
90722
L+ S +E G +R + I + EWAPGA +L+GDFN W P + + ++FG
Sbjct 156 LEAFSRSYEKFGFNRSAE-GITYREWAPGAFSAALVGDFNNWDPNAD-----RMSKNEFG
209
Query 90723 YWFIILEDK 90749
W I L +
Sbjct 210 VWEIFLPNN 218
>gb|ACF87587.1| unknown [Zea mays]
Length=442
Score = 254 bits (650), Expect(2) = 6e-123, Method: Compositional
matrix adjust.
Identities = 131/141 (93%), Positives = 137/141 (97%), Gaps = 0/141 (0%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETKNADKNGPIGIISAIGISILVGWGYILG+TFAVKDIPYLLSPDNDAGGYAIAEVF
Sbjct 187 MTEETKNADKNGPIGIISAIGISILVGWGYILGVTFAVKDIPYLLSPDNDAGGYAIAEVF
246

Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
YLAFKSRYGSG GGIVCLG+VAVA+Y CGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVN+
Sbjct 247 YLAFKSRYGSGAGGIVCLGVVAVAVYFCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNK
306
Query 111485 QDVPINAVWLSAFIALCMALP 111547
Q+VPINAVWLSA +ALCMALP
Sbjct 307 QEVPINAVWLSALVALCMALP 327
Score = 212 bits (539), Expect(2) = 6e-123, Method: Compositional
matrix adjust.
Identities = 103/115 (90%), Positives = 111/115 (97%), Gaps = 0/115 (0%)
Frame = +3
Query 111642 SLGSLVAFQAMVSIATVGLYISYALPVLFRVTLARKCFVPGPFSLGRYGVMVGWVAVLWV
111821
SLGSLVAFQAMVSIAT+GLYISYALP+LFRVTLARK FVPGPF+LGRYGV+VGWVAVLWV
Sbjct 328 SLGSLVAFQAMVSIATIGLYISYALPILFRVTLARKYFVPGPFNLGRYGVLVGWVAVLWV
387
Query 111822 ATISVLFSLPVAYPVTKDTLNYTPVAVGGLFFLVIASWVLSARHWFTGPITNLDG
111986
ATI+VLFSLPV YPVTKDTLNYTPVAVGGL FLV+ASW+LSARHWF GP+TNLDG
Sbjct 388 ATITVLFSLPVTYPVTKDTLNYTPVAVGGLLFLVLASWLLSARHWFKGPVTNLDG 442
Score = 214 bits (545), Expect = 4e-59, Method: Compositional matrix
adjust.
Identities = 126/168 (75%), Positives = 135/168 (80%), Gaps = 23/168 (14%)
Frame = +3
Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWAVTTSVDYSLAQLIQVIILLATGGK GGGY+ASKYMV+GFHAAILLSHAVINSLPI+
Sbjct 53 QWAVTTSVDYSLAQLIQVIILLATGGKNGGGYLASKYMVIGFHAAILLSHAVINSLPITF
112
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LSF GQFAAAWN+L
GVFVLM+AVPTVATERASAEFVFT
Sbjct 113 LSFFGQFAAAWNML----------------------GVFVLMVAVPTVATERASAEFVFT
150
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHMVRTYLNLEQH 111062

HFNTDN GAGIRS+LYIFVLGLLMSQYT TGYDASAHM N +++
Sbjct 151 HFNTDN-GAGIRSNLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKN 197
>ref|NP_001132503.1| uncharacterized protein LOC100193963 [Zea mays]
gb|ACF79071.1| unknown [Zea mays]
gb|ACF81365.1| unknown [Zea mays]
gb|ACN27978.1| unknown [Zea mays]
Length=524
Score = 255 bits (651), Expect(2) = 1e-122, Method: Compositional
matrix adjust.
Identities = 131/141 (93%), Positives = 137/141 (97%), Gaps = 0/141 (0%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETKNADKNGPIGIISAIGISILVGWGYILG+TFAVKDIPYLLSPDNDAGGYAIAEVF
Sbjct 269 MTEETKNADKNGPIGIISAIGISILVGWGYILGVTFAVKDIPYLLSPDNDAGGYAIAEVF
328
Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
YLAFKSRYGSG GGIVCLG+VAVA+Y CGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVN+
Sbjct 329 YLAFKSRYGSGAGGIVCLGVVAVAVYFCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNK
388
Query 111485 QDVPINAVWLSAFIALCMALP 111547
Q+VPINAVWLSA +ALCMALP
Sbjct 389 QEVPINAVWLSALVALCMALP 409
Score = 211 bits (536), Expect(2) = 1e-122, Method: Compositional
matrix adjust.
Identities = 103/117 (88%), Positives = 112/117 (96%), Gaps = 0/117 (0%)
Frame = +3
Query 111636 MQSLGSLVAFQAMVSIATVGLYISYALPVLFRVTLARKCFVPGPFSLGRYGVMVGWVAVL
111815
+ SLGSLVAFQAMVSIAT+GLYISYALP+LFRVTLARK FVPGPF+LGRYGV+VGWVAVL
Sbjct 408 LPSLGSLVAFQAMVSIATIGLYISYALPILFRVTLARKYFVPGPFNLGRYGVLVGWVAVL
467
Query 111816 WVATISVLFSLPVAYPVTKDTLNYTPVAVGGLFFLVIASWVLSARHWFTGPITNLDG
111986
WVATI+VLFSLPV YPVTKDTLNYTPVAVGGL FLV+ASW+LSARHWF GP+TNLDG

Sbjct 468
524
WVATITVLFSLPVTYPVTKDTLNYTPVAVGGLLFLVLASWLLSARHWFKGPVTNLDG
Score = 213 bits (543), Expect = 5e-58, Method: Compositional matrix
adjust.
Identities = 126/168 (75%), Positives = 135/168 (80%), Gaps = 23/168 (14%)
Frame = +3
Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWAVTTSVDYSLAQLIQVIILLATGGK GGGY+ASKYMV+GFHAAILLSHAVINSLPI+
Sbjct 135 QWAVTTSVDYSLAQLIQVIILLATGGKNGGGYLASKYMVIGFHAAILLSHAVINSLPITF
194
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LSF GQFAAAWN+L
GVFVLM+AVPTVATERASAEFVFT
Sbjct 195 LSFFGQFAAAWNML----------------------GVFVLMVAVPTVATERASAEFVFT
232
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHMVRTYLNLEQH 111062
HFNTDN GAGIRS+LYIFVLGLLMSQYT TGYDASAHM N +++
Sbjct 233 HFNTDN-GAGIRSNLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKN 279
Score = 183 bits (464), Expect = 6e-48, Method: Compositional matrix
adjust.
Identities = 94/121 (78%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Frame = +1
Query 107629 VLSNFAFSFSIISVLTGVTTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
107808
VLSNFAFSFSIISVLTG+TTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
Sbjct 43 VLSNFAFSFSIISVLTGITTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
102
Query 107809 TSGGLYYWSARLSGKRWAPFASWITGWYGKIVIRWA--HYVEKTLVQHCCKTVCLQSLKK
107982
TSGGLYYWSARLSGKRWAPFASWITGW+ +V +WA V+ +L Q + L + K
Sbjct 103 TSGGLYYWSARLSGKRWAPFASWITGWF-NVVGQWAVTTSVDYSLAQLIQVIILLATGGK
161
Query 107983 K 107985
Sbjct 162 N 162

Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix
adjust.
Identities = 33/52 (63%), Positives = 36/52 (69%), Gaps = 1/52 (2%)
Frame = +2
Query 107366 MTWNRSPA-GGGSAVTVDHSDDTGLARLRELGYRQELKRDLSYVPRHLRQLS 107518
MTWNRS A GGGS+ DDTGLARLRELGY+QELKRDLS + S
Sbjct 1 MTWNRSAADGGGSSAGTTAGDDTGLARLRELGYKQELKRDLSVLSNFAFSFS 52
>gb|ABO25741.1| starch branching enzyme IIb [Zea mays]
Length=799
Score = 411 bits (1056), Expect = 4e-122, Method: Compositional matrix
adjust.
Identities = 222/599 (37%), Positives = 349/599 (58%), Gaps = 31/599 (5%)
Frame = +3
Query 91167 MRKGRIAWLEKYVPT-------ISHKDKYRVYFNTPDGALERIPAWAAYVLPDAEGKQSY
91325
M K E ++P I H + +V +TP G + IPAW Y + A G+ Y
Sbjct 203 MSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSGIKDSIPAWIKYSV-QAPGEIPY
261
Query 91326 -AVHWEPPPEEIYKWRFGRPKVKGSLRIYECHVGISGSEQKVSSFQEFTSKVLPHIKKAG
91502
++++PP E Y +R +PK SLRIYE HVG+S E K++++ F +VLP IKK G
Sbjct 262 NGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPKINTYVNFRDEVLPRIKKLG
321
Query 91503 YNAVQLIGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSY
91682
YNAVQ++ + EH Y S GY VTN+FA SSRFGTP+D K L+D AH LGL+VL+D++HS+
Sbjct 322 YNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDVVHSH
381
Query 91683 ASADELVGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRI
91862
AS++ L GL+ FDG++ YFHSG RGHH W +R+F Y + +VL FLLSN WW+ EY+
Sbjct 382 ASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKF
441
Query 91863 DGFQFHSLSSMLYTHNGFS-TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIA
92039

Sbjct 442
501
DGF+F ++SM+YTH+G TFTG EY D DA++YL+L N+++H L+P+ VTI
DGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIG
Query 92040 EDATFYPGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--Q
92213
ED + P+ GG+GF+Y +++++ + W+ L ++ W M I+ L + +
Sbjct 502 EDVSGMSTFALPVHDGGVGFDYRMHMAVADKWI-DLLKQSDETWKMGDIVHTLTNRRWLE
560
Query 92214 NMLSYVENHNQSISGRKSFAEIILNSRECSVGSVD----DNLIRASSLLKLMKLITFTTS
92381
++Y E+H+Q++ G K+ A +++ ++D + R +L K+++LIT
Sbjct 561 KCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLG
620
Query 92382 GGAYLNFMGNEFAHPEKVEFP-----------MPSNDYSFELANRQWELLDKVFHKH--I
92522
G YLNFMGNEF HPE ++FP +P N+ S++ R+++L D + ++ +
Sbjct 621 GEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGM
680
Query 92523 FNFDKDVMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGV
92702
FD+ + L++ ++ I + VI F +G L F++NF+ S+ YR+G
Sbjct 681 QEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVYNFHCNNSYFDYRIGC
740
Query 92703 DEAGEYQLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLV
92879
+ G Y+++ ++D +GG + + T+D D S + PSR+ +Y V
Sbjct 741 RKPGVYKVVLDSDAGLFGGFSRIHHAA-EHFTADCSHDNRPYSFSVYTPSRTCVVYAPV
798
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix
adjust.
Identities = 24/69 (35%), Positives = 36/69 (52%), Gaps = 6/69 (9%)
Frame = +3
Query 90543 LKEASSGFELLGMHRHRQHRIDFMEWAPGARYCSLIGDFNQWSPTENCAREGHLGHDDFG
90722
L+ S +E G +R + I + EWAPGA +L+GDFN W P + + ++FG
Sbjct 156 LEAFSRSYEKFGFNRSAE-GITYREWAPGAFSAALVGDFNNWDPNAD-----RMSKNEFG
209

Query 90723 YWFIILEDK 90749
W I L +
Sbjct 210 VWEIFLPNN 218
>gb|ACF82475.1| unknown [Zea mays]
Length=530
Score = 253 bits (647), Expect(2) = 4e-122, Method: Compositional
matrix adjust.
Identities = 131/141 (93%), Positives = 137/141 (97%), Gaps = 0/141 (0%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETKNADKNGPIGIISAIGISILVGWGYILG+TFAVKDIPYLLSPDNDAGGYAIAEVF
Sbjct 275 MTEETKNADKNGPIGIISAIGISILVGWGYILGVTFAVKDIPYLLSPDNDAGGYAIAEVF
334
Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
YLAFKSRYGSG GGIVCLG+VAVA+Y CGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVN+
Sbjct 335 YLAFKSRYGSGAGGIVCLGVVAVAVYFCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNK
394
Query 111485 QDVPINAVWLSAFIALCMALP 111547
Q+VPINAVWLSA +ALCMALP
Sbjct 395 QEVPINAVWLSALVALCMALP 415
Score = 210 bits (535), Expect(2) = 4e-122, Method: Compositional
matrix adjust.
Identities = 103/117 (88%), Positives = 112/117 (96%), Gaps = 0/117 (0%)
Frame = +3
Query 111636 MQSLGSLVAFQAMVSIATVGLYISYALPVLFRVTLARKCFVPGPFSLGRYGVMVGWVAVL
111815
+ SLGSLVAFQAMVSIAT+GLYISYALP+LFRVTLARK FVPGPF+LGRYGV+VGWVAVL
Sbjct 414 LPSLGSLVAFQAMVSIATIGLYISYALPILFRVTLARKYFVPGPFNLGRYGVLVGWVAVL
473
Query 111816 WVATISVLFSLPVAYPVTKDTLNYTPVAVGGLFFLVIASWVLSARHWFTGPITNLDG
111986
WVATI+VLFSLPV YPVTKDTLNYTPVAVGGL FLV+ASW+LSARHWF GP+TNLDG
Sbjct 474 WVATITVLFSLPVTYPVTKDTLNYTPVAVGGLLFLVLASWLLSARHWFKGPVTNLDG
530

Score = 213 bits (541), Expect = 8e-58, Method: Compositional matrix
adjust.
Identities = 126/168 (75%), Positives = 135/168 (80%), Gaps = 23/168 (14%)
Frame = +3
Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWAVTTSVDYSLAQLIQVIILLATGGK GGGY+ASKYMV+GFHAAILLSHAVINSLPI+
Sbjct 141 QWAVTTSVDYSLAQLIQVIILLATGGKNGGGYLASKYMVIGFHAAILLSHAVINSLPITF
200
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LSF GQFAAAWN+L
GVFVLM+AVPTVATERASAEFVFT
Sbjct 201 LSFFGQFAAAWNML----------------------GVFVLMVAVPTVATERASAEFVFT
238
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHMVRTYLNLEQH 111062
HFNTDN GAGIRS+LYIFVLGLLMSQYT TGYDASAHM N +++
Sbjct 239 HFNTDN-GAGIRSNLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKN 285
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix
adjust.
Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 4/122 (3%)
Frame = +1
Query 107629 VLSNFAFSFSIISVLTGVTTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
107808
V++NF+ SFSI+SV+TGVTTL+ TGL FGGPATM +GW +AGAFT AVG +MAEICS++P
Sbjct 48 VVANFSVSFSIVSVVTGVTTLFGTGLQFGGPATMVYGWPIAGAFTAAVGLAMAEICSAYP
107
Query 107809 TSGGLYYWSARL-SGKRWAPFASWITGWYGKIVIRWA--HYVEKTLVQHCCKTVCLQSLK
107979
TSGGLY+WSARL + +RW PFA+W+TGW+ +V +WA V+ +L Q + L +
Sbjct 108 TSGGLYFWSARLCTHRRWGPFAAWLTGWF-NVVGQWAVTTSVDYSLAQLIQVIILLATGG
166
Query 107980 KK 107985
K
Sbjct 167 KN 168

gb|ACF84529.1| unknown [Zea mays]
Length=450
Score = 253 bits (647), Expect(2) = 7e-122, Method: Compositional
matrix adjust.
Identities = 131/141 (93%), Positives = 137/141 (97%), Gaps = 0/141 (0%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETKNADKNGPIGIISAIGISILVGWGYILG+TFAVKDIPYLLSPDNDAGGYAIAEVF
Sbjct 195 MTEETKNADKNGPIGIISAIGISILVGWGYILGVTFAVKDIPYLLSPDNDAGGYAIAEVF
254
Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
YLAFKSRYGSG GGIVCLG+VAVA+Y CGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVN+
Sbjct 255 YLAFKSRYGSGAGGIVCLGVVAVAVYFCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNK
314
Query 111485 QDVPINAVWLSAFIALCMALP 111547
Q+VPINAVWLSA +ALCMALP
Sbjct 315 QEVPINAVWLSALVALCMALP 335
Score = 209 bits (533), Expect(2) = 7e-122, Method: Compositional
matrix adjust.
Identities = 103/117 (88%), Positives = 112/117 (96%), Gaps = 0/117 (0%)
Frame = +3
Query 111636 MQSLGSLVAFQAMVSIATVGLYISYALPVLFRVTLARKCFVPGPFSLGRYGVMVGWVAVL
111815
+ SLGSLVAFQAMVSIAT+GLYISYALP+LFRVTLARK FVPGPF+LGRYGV+VGWVAVL
Sbjct 334 LPSLGSLVAFQAMVSIATIGLYISYALPILFRVTLARKYFVPGPFNLGRYGVLVGWVAVL
393
Query 111816 WVATISVLFSLPVAYPVTKDTLNYTPVAVGGLFFLVIASWVLSARHWFTGPITNLDG
111986
WVATI+VLFSLPV YPVTKDTLNYTPVAVGGL FLV+ASW+LSARHWF GP+TNLDG
Sbjct 394 WVATITVLFSLPVTYPVTKDTLNYTPVAVGGLLFLVLASWLLSARHWFKGPVTNLDG
450
Score = 213 bits (541), Expect = 2e-58, Method: Compositional matrix
adjust.
Identities = 126/168 (75%), Positives = 135/168 (80%), Gaps = 23/168 (14%)

Frame = +3
Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWAVTTSVDYSLAQLIQVIILLATGGK GGGY+ASKYMV+GFHAAILLSHAVINSLPI+
Sbjct 61 QWAVTTSVDYSLAQLIQVIILLATGGKNGGGYLASKYMVIGFHAAILLSHAVINSLPITF
120
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LSF GQFAAAWN+L
GVFVLM+AVPTVATERASAEFVFT
Sbjct 121 LSFFGQFAAAWNML----------------------GVFVLMVAVPTVATERASAEFVFT
158
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHMVRTYLNLEQH 111062
HFNTDN GAGIRS+LYIFVLGLLMSQYT TGYDASAHM N +++
Sbjct 159 HFNTDN-GAGIRSNLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKN 205
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix
adjust.
Identities = 46/89 (52%), Positives = 63/89 (71%), Gaps = 4/89 (4%)
Frame = +1
Query 107728 MTFGWFVAGAFTMAVGASMAEICSSFPTSGGLYYWSARL-SGKRWAPFASWITGWYGKIV
107904
M +GW +AGAFT AVG +MAEICS++PTSGGLY+WSARL + +RW PFA+W+TGW+ +V
Sbjct 1 MVYGWPIAGAFTAAVGLAMAEICSAYPTSGGLYFWSARLCTHRRWGPFAAWLTGWF-NVV
59
Query 107905 IRWA--HYVEKTLVQHCCKTVCLQSLKKK 107985
+WA V+ +L Q + L + K
Sbjct 60 GQWAVTTSVDYSLAQLIQVIILLATGGKN 88
>ref|NP_001144724.1| uncharacterized protein LOC100277766 precursor [Zea
mays]
gb|ACG42587.1| hypothetical protein [Zea mays]
Length=324
Score = 386 bits (991), Expect = 1e-119, Method: Compositional matrix
adjust.
Identities = 277/303 (91%), Positives = 285/303 (94%), Gaps = 3/303 (1%)
Frame = -2
Query 97295 RHVINFAPSRAVNPASLAWDPTAQHFVVAGGGDAVLCVSDAGVTEsivssgassvavddr

97116
Sbjct 25
84
RH+I FAPSRAVNPASLAWDPTAQHFVVAGGGDAVL VSDAGV ESIVSSGAS VAVDDR
RHIITFAPSRAVNPASLAWDPTAQHFVVAGGGDAVLSVSDAGVIESIVSSGASCVAVDDR
Query 97115 rrrllvaSPGSVSAFDLRSPRPHRLILSTPVPDPAPPGGIAVDPHTGNAFLTVGARIYKL
96936
RRRLLVASPGSVSAFDLRSPRPHRLILSTPV DPAPPGGIAVDPHTGNAFLTVGARIYKL
Sbjct 85 RRRLLVASPGSVSAFDLRSPRPHRLILSTPVADPAPPGGIAVDPHTGNAFLTVGARIYKL
144
Query 96935 SVEGDLATLATAPALGSEPLASLTAHVSRGFLLVGQPGTGSILRVDMEDGATRTVSCALT
96756
SVEG+LATL +APAL S PLASLTAHVSRGFLLVGQP +GS+LRVDMEDGATRTVSCAL
Sbjct 145 SVEGELATLGSAPALDSVPLASLTAHVSRGFLLVGQPSSGSVLRVDMEDGATRTVSCAL-
203
Query 96755 PPTPMavavrtdgavavggaaglrlvVSNDGWASCGVRDEAAPAPDGLvaavavrerrrv
96576
TP AVAVRTDGAVAVGGAAGLRLVVSNDGWASCGVRDEAAPAPDG VAAVAVRERRRV
Sbjct 204 --TPTAVAVRTDGAVAVGGAAGLRLVVSNDGWASCGVRDEAAPAPDGPVAAVAVRERRRV
261
Query 96575 yalveaeaVNGVNKWQIEEASWKSESEGEMvvvlvfvgvalAIFMFWRFQMRQLAGNMNK
96396
YALV A A++G NKW+IEEASWKSESEGEMVVVLVFVGVAL IFMFWRFQMRQLAGNMNK
Sbjct 262 YALVGAAAMDGGNKWRIEEASWKSESEGEMVVVLVFVGVALTIFMFWRFQMRQLAGNMNK
321
Query 96395 KIR 96387
KIR
Sbjct 322 KIR 324
>gb|ABA08422.1| polymerase [Zea mays]
Length=236
Score = 377 bits (969), Expect = 4e-118, Method: Compositional matrix
adjust.
Identities = 173/236 (73%), Positives = 203/236 (86%), Gaps = 0/236 (0%)
Frame = -2
Query 81677 GKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLG
81498
GK D TLFTK DLFVCQIYVDDIIFGSTN CEEF ++M+++FEMSM+GEL++FLG
Sbjct 1 GKADPTLFTKTCNGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLG

60
Query 81497 LQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSI
81318
Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM T+GH DL++GG VDQK YRS+
Sbjct 61 FQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSM
120
Query 81317 IGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFE
81138
IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KRILRYL TP GLWYPKG+ F+
Sbjct 121 IGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFD
180
Query 81137 LIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNC
80970
L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ SVALSTAEAEY++AG C
Sbjct 181 LVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQC 236
Score = 362 bits (929), Expect = 9e-113, Method: Compositional matrix
adjust.
Identities = 180/232 (78%), Positives = 195/232 (84%), Gaps = 0/232 (0%)
Frame = +1
Query 141883 KDGATLFTKTCDGDLFVCQICVDDIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIF
142062
K TLFTKTC+GDLFVCQI VDDIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL F
Sbjct 2 KADPTLFTKTCNGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGF
61
Query 142063 QVKQLKDDTFISQTKYTQDILKMFEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMI
142242
QVKQLKD TFISQTKYTQD+LK F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMI
Sbjct 62 QVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMI
121
Query 142243 GSLLYLYVSRLHIILSVCMCARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDL
142422
GSLLYL SR I+LSVCMCARFQSD KECHL VK+ILRYLV T F LWYPKGSTFDL
Sbjct 122 GSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDL
181
Query 142423 VGYFDIDYVEWKLDRKSTSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIA 142578
VGY D DY K+DRKSTS TC FLGRSLVSW+SK+Q VALST +A+Y+ A
Sbjct 182 VGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAA 233

gb|ABA08423.1| polymerase [Zea mays]
Length=236
Score = 377 bits (967), Expect = 7e-118, Method: Compositional matrix
adjust.
Identities = 173/236 (73%), Positives = 203/236 (86%), Gaps = 0/236 (0%)
Frame = -2
Query 81677 GKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLG
81498
GK D TLFTK DLFVCQIYVDDIIFGSTN CEEF ++M+++FEMSM+GEL++FLG
Sbjct 1 GKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLG
60
Query 81497 LQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSI
81318
Q+KQLKDG FISQ+KY +D+LK+FG+++AKP KTPM T+GH DL++GG VDQK YRS+
Sbjct 61 FQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSM
120
Query 81317 IGSLLYITASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFE
81138
IGSLLY+ ASRPD+M SVCMCARFQ+ P+E HL A KRILRYL TP GLWYPKG+ F+
Sbjct 121 IGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFD
180
Query 81137 LIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNC
80970
L+GYSDSDYAGCKVDRKSTSG CQFLGRSLVSW+SKKQ SVALSTAEAEY++AG C
Sbjct 181 LVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQC 236
Score = 363 bits (932), Expect = 3e-113, Method: Compositional matrix
adjust.
Identities = 181/232 (78%), Positives = 195/232 (84%), Gaps = 0/232 (0%)
Frame = +1
Query 141883 KDGATLFTKTCDGDLFVCQICVDDIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIF
142062
K TLFTKTCDGDLFVCQI VDDIIFGSTNQKSCEEFSR+M QK+EMSMMGELNYFL F
Sbjct 2 KADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGF
61
Query 142063 QVKQLKDDTFISQTKYTQDILKMFEIKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMI

142242
Sbjct 62
121
QVKQLKD TFISQTKYTQD+LK F +KDAKP KT MGT+GH DL+ GGKSVDQK RSMI
QVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMI
Query 142243 GSLLYLYVSRLHIILSVCMCARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDL
142422
GSLLYL SR I+LSVCMCARFQSD KECHL VK+ILRYLV T F LWYPKGSTFDL
Sbjct 122 GSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDL
181
Query 142423 VGYFDIDYVEWKLDRKSTSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIA 142578
VGY D DY K+DRKSTS TC FLGRSLVSW+SK+Q VALST +A+Y+ A
Sbjct 182 VGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAA 233
>gb|ACR35057.1| unknown [Zea mays]
Length=250
Score = 373 bits (957), Expect = 2e-116, Method: Compositional matrix
adjust.
Identities = 250/250 (100%), Positives = 250/250 (100%), Gaps = 0/250 (0%)
Frame = -3
Query 13465 MGRAGTCPAPGPTESSGGRAHGHAMTKDAAAPSELPLPGTAVRSLHLtpttrrpcscrrh
13286
MGRAGTCPAPGPTESSGGRAHGHAMTKDAAAPSELPLPGTAVRSLHLTPTTRRPCSCRRH
Sbjct 1 MGRAGTCPAPGPTESSGGRAHGHAMTKDAAAPSELPLPGTAVRSLHLTPTTRRPCSCRRH
60
Query 13285 ppssnssgprprppsrslprrRHGVPRPADRRCSHCSRRSAPAAGPGYQNSSNYVQKKKR
13106
PPSSNSSGPRPRPPSRSLPRRRHGVPRPADRRCSHCSRRSAPAAGPGYQNSSNYVQKKKR
Sbjct 61 PPSSNSSGPRPRPPSRSLPRRRHGVPRPADRRCSHCSRRSAPAAGPGYQNSSNYVQKKKR
120
Query 13105 EMLVPACAYHVeeagpalllphaalpeeelLRVAGDLRRGPRRHVAPGDASPVALAQLVQ
12926
EMLVPACAYHVEEAGPALLLPHAALPEEELLRVAGDLRRGPRRHVAPGDASPVALAQLVQ
Sbjct 121 EMLVPACAYHVEEAGPALLLPHAALPEEELLRVAGDLRRGPRRHVAPGDASPVALAQLVQ
180
Query 12925 AGKELPVLLLAPWNSWRRRYISRVLFLFRNISCYRPTQQGLNNVQGSTSISQSQLLHCYL
12746
AGKELPVLLLAPWNSWRRRYISRVLFLFRNISCYRPTQQGLNNVQGSTSISQSQLLHCYL
Sbjct 181 AGKELPVLLLAPWNSWRRRYISRVLFLFRNISCYRPTQQGLNNVQGSTSISQSQLLHCYL

240
Query 12745 QLKGCSISGR 12716
QLKGCSISGR
Sbjct 241 QLKGCSISGR 250
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length=1439
Score = 405 bits (1041), Expect = 3e-115, Method: Compositional matrix
adjust.
Identities = 215/561 (38%), Positives = 322/561 (57%), Gaps = 18/561 (3%)
Frame = -2
Query 82367 QIPPNASTSNYQTVSRIHHSIVKDHPVDQIVGDISKGVQTRSRIASFCEHFSFVSCVEPN
82188
Q P +A S +R+ H I K P G + G +RI EP+
Sbjct 882 QTPDSAPLSAAAPRTRLQHGISK--PKQFTDGTVRYG-NAAARI------------TEPS
926
Query 82187 RVDEALLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNK
82008
V EAL D W AM E +N W LV + N+I KWVF+ K+N DG + R K
Sbjct 927 SVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLK
986
Query 82007 ARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISEL
81828
ARLVA+G+ Q G+D+ +TF+PV + IR++L+ A + L Q+DV++AFL+G + E
Sbjct 987 ARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEET
1046
Query 81827 VYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTK
81648
VY++QPPGF D PN+ L K+LYGLKQ PRAWY RL + L S F K D +LF
Sbjct 1047 VYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIY
1106
Query 81647 RIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKDGI
81468
+YVDDII ++ + + +F + +G+L +FLG+++ + DG+
Sbjct 1107 NAHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGL
1166

Query 81467 FISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKL--YRSIIGSLLYIT
81294
+ Q KY +D+LK+ G+E KP+ TP+AT+ L G + ++ YRS++G+L Y+T
Sbjct 1167 LLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLT
1226
Query 81293 ASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSD
81114
+RPD+ +++ +F +P ++H A KRILR +++T +GL L +SD+D
Sbjct 1227 LTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDAD
1286
Query 81113 YAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLL
80934
+AGC DRKST G FLG +L+SW+SKKQ++V+ S+ EAEY + N A+++W++ L
Sbjct 1287 WAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLH
1346
Query 80933 DYEIIFKNVP-LMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDD
80757
+ I +P L CDN A L++ P+ ++RTKHI++ HF+RD V + I I T+D
Sbjct 1347 ELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTND
1406
Query 80756 QLADIFTKPLDETRFCSLRSE 80694
Q+AD FTK L R R +
Sbjct 1407 QVADGFTKALTIGRLNEFRRQ 1427
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix
adjust.
Identities = 143/476 (30%), Positives = 243/476 (51%), Gaps = 19/476 (4%)
Frame = +1
Query 141436 FKRNEVWSLVPHPKQKRCRNQVCVPQQKRRVWSGD------KEQRSACGKRLCPSHRFGL
141597
++N W+LVP R RN + + ++ D K + A G + ++G+
Sbjct 948 LQKNNTWTLVP---PDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFK----QQYGI
1000
Query 141598 **D--FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRY
141771
D FSPV + + ++L+ A + L Q+DV+NAFL+G ++E VY+++ P F + +
Sbjct 1001 DYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTH
1060

Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
PN+ L K+LY LK+ P WY L + L S F K +LF + VD
Sbjct 1061 PNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVD
1120
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
DII ++ + + + + + +G+L+YFL +V + D + Q KY +D+LK
Sbjct 1121 DIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKR
1180
Query 142132 FEIKDAKPIKTLMGTNGHLDLDIGG--KSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCA
142305
++ KP+ T + T+ L G + RS++G+L YL ++R + ++
Sbjct 1181 VGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVC
1240
Query 142306 RFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSET
142485
+F + H VK+ILR + T L + L + D D+ DRKST
Sbjct 1241 QFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGY
1300
Query 142486 CLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVP-LLC
142662
LFLG +L+SW+SK+Q+ V+ S+T+A+Y + +++ ++ L + G L+ +P L C
Sbjct 1301 ALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWC
1360
Query 142663 DNKSAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
DN A L PI ++RTKHI++ HF+RD + ++I +ST+ Q+ D F+ L
Sbjct 1361 DNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKAL
1416
Score = 35.4 bits (80), Expect(2) = 0.10, Method: Composition-based
stats.
Identities = 18/68 (26%), Positives = 33/68 (49%), Gaps = 6/68 (9%)
Frame = +1
Query 53167 FITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIKLFMRG------QCHTHY
53328
+++FIDD ++F ++YLL+ K + F + E RKI F + + H+
Sbjct 536 YVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHF

595
Query 53329 NPMGLLKQ 53352
+G+ Q
Sbjct 596 KTIGIHHQ 603
Score = 25.0 bits (53), Expect(2) = 0.10, Method: Composition-based
stats.
Identities = 11/34 (32%), Positives = 22/34 (65%), Gaps = 0/34 (0%)
Frame = +3
Query 53025 SKC*VCVQSKQPRKPHKATDARNLAPLDLMHSNL 53126
S C C+Q+K + P+ + +++ APL L+ S++
Sbjct 489 SVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDV 522
>gb|AAC01575.1| hypothetical protein [Zea mays]
Length=224
Score = 349 bits (895), Expect = 2e-108, Method: Compositional matrix
adjust.
Identities = 160/186 (86%), Positives = 174/186 (94%), Gaps = 0/186 (0%)
Frame = +2
Query 148556 RGETLPSDVFYHVIGTPPVRNPEGLQVTNDAEGHHIVNLIMTKDWRAPITLFLQGYYHSS
148735
RGE LPSDVFYHVIGTP R+PEGLQ+TND+EGH IVNLIMT+DWRAPITLFLQGYYH +
Sbjct 39 RGEALPSDVFYHVIGTPAFRSPEGLQITNDSEGHRIVNLIMTEDWRAPITLFLQGYYHPT
98
Query 148736 DVNEAKRLKHRSKDFVLVGDQLYKKGISQPMLKCVTKTEGIQILREVHSETCGSHSGPRA
148915
D+NEAK LKHRS+DF L+ QLYKKG+SQPMLKCVT+TEG+QILREVHS TCGSH+GPRA
Sbjct 99 DINEAKCLKHRSRDFALIEGQLYKKGVSQPMLKCVTETEGVQILREVHSGTCGSHAGPRA
158
Query 148916 LAAKVIHQGFYWPAIICAKN*VTRSCEACQKFSPRSGNPSQFTKLIAHTWPLQRWGLDIV
149095
LAAKVIHQGFYWPA+ICA N VTRSCEACQKFSPRSG+PSQFTKLIAHTWPLQRWGLDIV
Sbjct 159 LAAKVIHQGFYWPAMICAANRVTRSCEACQKFSPRSGSPSQFTKLIAHTWPLQRWGLDIV
218
Query 149096 GPLPTA 149113
GPLPTA
Sbjct 219 GPLPTA 224

Score = 127 bits (319), Expect = 1e-31, Method: Compositional matrix
adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 37/256 (14%)
Frame = +2
Query 128537 YCDEVRRLEDKFYGLELNHIARRYNETADELAKIASGRTTVPPDVFSRDLHQPSVKTDNT
128716
Y +R LE +F G L H+ R NE AD LAK A+ +P DVF + P+ ++
Sbjct 3 YLATIRSLERQFKGFTLQHVDRAKNEEADALAKAAARGEALPSDVFYHVIGTPAFRS---
59
Query 128717 pkpekasaqpeapsaqpeapsaqpeapsTPEGEALRVEGEQSRVTP---NRNWQTPYLQY
128887
PEG + + E R+ +W+ P +
Sbjct 60 -----------------------------PEGLQITNDSEGHRIVNLIMTEDWRAPITLF
90
Query 128888 LHRGELPLDraearrlarraKSFVLLGDGKELYHRSPSGILQRCISIAEGQELLQEIHSG
129067
L P D EA+ L R++ F L+ +LY + S + +C++ EG ++L+E+HSG
Sbjct 91 LQGYYHPTDINEAKCLKHRSRDFALIEG--QLYKKGVSQPMLKCVTETEGVQILREVHSG
148
Query 129068 ACGHHAAPRALVGNTFRQGFYWPTAVADATRIVRTCQGCQFYARQTHLPAQALQTIPITW
129247
CG HA PRAL QGFYWP + A R+ R+C+ CQ ++ ++ P+Q + I TW
Sbjct 149 TCGSHAGPRALAAKVIHQGFYWPAMICAANRVTRSCEACQKFSPRSGSPSQFTKLIAHTW
208
Query 129248 PFAVWGLDLVSPLQKA 129295
P WGLD+V PL A
Sbjct 209 PLQRWGLDIVGPLPTA 224
Score = 43.5 bits (101), Expect(3) = 2e-08, Method: Compositional matrix
adjust.
Identities = 21/51 (41%), Positives = 31/51 (61%), Gaps = 1/51 (2%)
Frame = +3
Query 23469 LIEGDLFKKESIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGKKI 23621
LIEG L+KK + +LKC + +EG ++++ +H G G H RAL K I
Sbjct 115 LIEGQLYKK-GVSQPMLKCVTETEGVQILREVHSGTCGSHAGPRALAAKVI 164

Score = 35.0 bits (79), Expect(3) = 2e-08, Method: Compositional matrix
adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 0/25 (0%)
Frame = +2
Query 23732 FI*LIQWS*PLQRWSLDIIGPMPLA 23806
F LI + PLQRW LDI+GP+P A
Sbjct 200 FTKLIAHTWPLQRWGLDIVGPLPTA 224
Score = 24.6 bits (52), Expect(3) = 2e-08, Method: Compositional matrix
adjust.
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 0/39 (0%)
Frame = +1
Query 23617 KSFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQPFIF 23733
K + FYW ++ + R C+ C ++ P F
Sbjct 162 KVIHQGFYWPAMICAANRVTRSCEACQKFSPRSGSPSQF 200
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix
adjust.
Identities = 17/23 (74%), Positives = 19/23 (83%), Gaps = 0/23 (0%)
Frame = +1
Query 148441 MQYLTAVRSLEIQFKGLTLQHMD 148509
MQYL +RSLE QFKG TLQH+D
Sbjct 1 MQYLATIRSLERQFKGFTLQHVD 23
>gb|AAL66756.1|AF464738_7 putative prpol [Zea mays]
Length=969
Score = 371 bits (952), Expect = 5e-107, Method: Compositional matrix
adjust.
Identities = 190/417 (46%), Positives = 256/417 (61%), Gaps = 13/417 (3%)
Frame = +2
Query 146018 GSVNHVTLTGPVMQTKWSHVPLTFDARDVDLRSAPHVDAMVINCSVAGWDLHKVLVDNGS
146197
G + HV + P ++++WSH+P+TF D+ L+ PH DAMVI+C + G+ +H VLVD GS
Sbjct 233 GEIMHVGVQVPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVISCIIKGFLVHNVLVDTGS
292
Query 146198 QADIIFLHAFDRMGISHSLLKPSNNPLYGFGGKGTFPVGKIELPLSFDVAPNARSEHVTF
146377

Sbjct 293
352
ADII AF +M + S +PL GFGG+ + KI +P++F N R+E V F
AADIIVAKAFRQMQEPEDKIHDSTHPLCGFGGRQIVALDKIMMPVTFGFVNNTRTEQVVF
Query 146378 DIVDMVYPYNAIMGRGSINKFEVAIHSLYLCMKIPGLQGVITVYDNQQTARNIERDFVPG
146557
DIVDM YPYNAI+G G++N FE +H YL MKIP QG I ++ +Q+ AR E ++
Sbjct 353 DIVDMEYPYNAIIGHGTLNAFEAILHPAYLYMKIPSDQGPIAIHGSQEAARKAEGNWTDS
412
Query 146558 QRNVHCLTT*HEVTEATCPTNDEKVKAQLQSNDGMKTVPLDPATPKQTVVISEDLTSQDE
146737
+ H + A + + + S D K + L +Q V++ LT + E
Sbjct 413 K-------AIHNIDGAEACEQYKYRREKAASTDQPKLMLLCEDIAEQKVLLGSQLTEEQE
465
Query 146738 EKLISCLSRNMDVFAWSALDLVGVNRTITEHSLSIDPSVRPKKQRLRKMSDKKTEATKAE
146917
+ L L N DVFAWSA DL GVNR + EHSL++DPS RP+KQRLRKMSD K + + E
Sbjct 466 KTLTRFLFNNKDVFAWSANDLCGVNRDVNEHSLNVDPSFRPRKQRLRKMSDDKAKGARNE
525
Query 146918 VHRLLEANFIEPVAYPTWLANIVMVQKKSGKWRMCIDFTSLNKSCPKDNFPLLRIDKIVD
147097
V RLL A I V YP WLAN VMV+K +GKWRMCIDFT LNK+CPKD FPL RID +VD
Sbjct 526 VKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLSRIDSLVD
585
Query 147098 SAAGCEVMSLIDCFSDYHQIYYEGGRQGQHQF------HHTLRHVLLHQDAGGTQER
147250
+AA E+MSL+DC+S YHQI+ + + + F + LR ++AGG+ R
Sbjct 586 AAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSR
642
Score = 369 bits (946), Expect = 3e-106, Method: Compositional matrix
adjust.
Identities = 183/377 (49%), Positives = 242/377 (64%), Gaps = 0/377 (0%)
Frame = +2
Query 126791 ASKQIRIGSELDPK*EAVLVDFLHANADVFAWSPSDMPGIPRDVAEHSLDI*AGA*PMKQ
126970
A +++ +GS+L + E L FL N DVFAWS +D+ G+ RDV EHSL++ P KQ
Sbjct 450 AEQKVLLGSQLTEEQEKTLTRFLFNNKDVFAWSANDLCGVNRDVNEHSLNVDPSFRPRKQ
509

Query 126971 PLRRFDEEKRRGIGEEIHKLMAAGFIKEVFHPEWLANPVLVRKKGGKWRMCVDYTGLNKA
127150
LR+ ++K +G E+ +L++AG I+EV +PEWLAN V+V+K GKWRMC+D+T LNKA
Sbjct 510 RLRKMSDDKAKGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKA
569
Query 127151 CPKVPYPLPRIDQIVDSTAGCETLSFLDAYSGYHQIRMKESDQLATSFITPFGMYCYITM
127330
CPK +PL RID +VD+ A E +S LD YSGYHQI MK+ D+ TSFITP G YCY+ M
Sbjct 570 CPKDEFPLSRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRM
629
Query 127331 PFGLRNAGATY*RCMNHVFGEHIGRTVEAYVDDIVVKTRKASDLLSDLETTFRCLKAKGV
127510
P GL+NAG ++ R V IGR V YVDDI+VK+ K + ++DL+ TF + +
Sbjct 630 PEGLKNAGGSFSRMTAKVLHSQIGRNVLTYVDDIIVKSMKQENHIADLQETFANFRQAVL
689
Query 127511 KLNPEKCVFGVPRGMLLGFIVSERGIEANPEKIVAITNMGPIKDLKGVQRVMGCLAALSR
127690
KLNPEKCVFGV +G LG +VS +GIEANP KI AI M P KG QR+ G LA+L+R
Sbjct 690 KLNPEKCVFGVKKGKFLGCLVSTKGIEANPNKIEAILRMEPPSTKKGAQRLTGRLASLNR
749
Query 127691 FISRFGERGLPLYRLLRKAECFT*TPEAEEALGNLKALLTNAPILVPPAAGEALLIYVVA
127870
FIS ER LP + +L+ E F ++A LK L + +L PPA G LL+YV A
Sbjct 750 FISGSAERNLPFFEVLKSTEVFQWGSAQQKAFEELKQYLIDLTMLTPPAPGAPLLLYVAA
809
Query 127871 TTQVVSAAIVVERREEG 127921
+ I+ R G
Sbjct 810 SHSAPLKDIMRNREATG 826
Score = 254 bits (648), Expect = 8e-69, Method: Compositional matrix
adjust.
Identities = 121/207 (58%), Positives = 152/207 (73%), Gaps = 3/207 (1%)
Frame = +3
Query 147111 AKSCHLLTVSPTTTRY---IMKEEDKASTSFITPFGTYCFIRMPEGLKNAGSTFSRLTKT
147281
A S L+++ + Y MK+ED+ TSFITP GTYC++RMPEGLKNAG +FSR+T
Sbjct 587 AASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAK
646

Query 147282 VLESQVGRNIFMYVDDIVVASKNKEDHLADLAETFTNMRDAHLRLNPEKCVFGVRQGKIL
147461
VL SQ+GRN+ YVDDI+V S +E+H+ADL ETF N R A L+LNPEKCVFGV++GK L
Sbjct 647 VLHSQIGRNVLTYVDDIIVKSMKQENHIADLQETFANFRQAVLKLNPEKCVFGVKKGKFL
706
Query 147462 GYLVSHRGIEANPTKIQAIINMTPPQSTMDVQHLTGRLAALNRFISKSAERSLPFLKTLR
147641
G LVS +GIEANP KI+AI+ M PP + Q LTGRLA+LNRFIS SAER+LPF + L+
Sbjct 707 GCLVSTKGIEANPNKIEAILRMEPPSTKKGAQRLTGRLASLNRFISGSAERNLPFFEVLK
766
Query 147642 GAKDFTWGSEQATAFTSLKQHLSELAI 147722
+ F WGS Q AF LKQ+L +L +
Sbjct 767 STEVFQWGSAQQKAFEELKQYLIDLTM 793
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix
adjust.
Identities = 75/161 (47%), Positives = 107/161 (66%), Gaps = 8/161 (5%)
Frame = +1
Query 147985 LGELFRNPEASV*IAKWAAKLSGYHITFEPRTTIK*QVLVDFIVDWTGPTRQQEEPSEKV
148164
L ++ RN EA+ + KWAA+L+ + I + R++I+ Q L DFI DWT P +E S+ V
Sbjct 815 LKDIMRNREATGRVGKWAAELNEFTIDYVHRSSIQSQALADFIADWT-PGAHEEGTSKDV
873
Query 148165 --WTIHCDDAWCHagagaaaiiTSPTCVKHRYVARLSFALESDRCTNNIAEYEVVILGLR
148338
WT+ CDD+W GAGAA ++ +P+ VK + +L F+ CTNNIAEYE ++L LR
Sbjct 874 EAWTVFCDDSWGTFGAGAATVLVTPSNVKTCFAVKLDFS-----CTNNIAEYEALLLWLR
928
Query 148339 KLRALGVTTCIVKTDSKVIAGQVEKEYLTKDPALMQYLTAV 148461
KLR++G+ I+KTDS+VIAG V+K +DP L +YL AV
Sbjct 929 KLRSMGIRRAILKTDSQVIAGHVDKSSRARDPKLEKYLDAV 969
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix
adjust.
Identities = 65/167 (39%), Positives = 95/167 (57%), Gaps = 9/167 (5%)
Frame = +2
Query 128066 VIVVSSFPLGEIIQCREASGRIAK*AVEIMGETISFAPRKAIKSQVLADFVAEWVDT*LP
128245

Sbjct 807
862
V S PL +I++ REA+GR+ K A E+ TI + R +I+SQ LADF+A+W P
VAASHSAPLKDIMRNREATGRVGKWAAELNEFTIDYVHRSSIQSQALADFIADWT----P
Query 128246 IAPIQP-----ELWTMFFDGSLMKIGAGAGLLFISPLGKHLRYVLRLHFPASNNVAKYEA
128410
A + E WT+F D S GAGA + ++P + ++L F +NN+A+YEA
Sbjct 863 GAHEEGTSKDVEAWTVFCDDSWGTFGAGAATVLVTPSNVKTCFAVKLDFSCTNNIAEYEA
922
Query 128411 LVNGLHIAIELGVRRLNARGDSQLVIDQVMKNSHCRDPKMEAYCDEV 128551
L+ L +G+RR + DSQ++ V K+S RDPK+E Y D V
Sbjct 923 LLLWLRKLRSMGIRRAILKTDSQVIAGHVDKSSRARDPKLEKYLDAV 969
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix
adjust.
Identities = 46/166 (28%), Positives = 79/166 (48%), Gaps = 3/166 (2%)
Frame = +1
Query 120391 EVCSVKVAAP-VYLDWSDKPITFNQGDHPDRVPSPGKYPLVVDPVIGNVRLTKVLMDGGS
120567
E+ V V P + WS PITF+Q D + P +V+ +I + VL+D GS
Sbjct 234 EIMHVGVQVPFIKSRWSHIPITFSQEDLQLK-DYPHNDAMVISCIIKGFLVHNVLVDTGS
292
Query 120568 SLNIIYAETLGLLRIDLSSVRAGAAPFHGIIPGKRVQPLRQLDLLVCFGTPSNFRRETLT
120747
+ +II A+ ++ + P G G+++ L ++ + V FG +N R E +
Sbjct 293 AADIIVAKAFRQMQEPEDKIHDSTHPLCGF-GGRQIVALDKIMMPVTFGFVNNTRTEQVV
351
Query 120748 FEVVGFRGTYHAVVGRPCYAKFMAVPNYTYLKLKMSGPNGHYYIYG 120885
F++V Y+A++G F A+ + YL +K+ G I+G
Sbjct 352 FDIVDMEYPYNAIIGHGTLNAFEAILHPAYLYMKIPSDQGPIAIHG 397
>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
Length=1292
Score = 150 bits (380), Expect(3) = 1e-105, Method: Compositional
matrix adjust.
Identities = 72/102 (71%), Positives = 83/102 (81%), Gaps = 0/102 (0%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT

53599
Sbjct 634
693
GEAIL CHVLN+VP K+K+ITPF++WEK++LN+SYL T CL VNVPINKKRKLGPKT
GEAILTACHVLNRVPTKNKEITPFEEWEKRRLNLSYLRTWGCLAKVNVPINKKRKLGPKT
Query 53600 VDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*E 53725
VDCVFL Y+F+ GYRFLII S VPDM V TI+ESR F E
Sbjct 694 VDCVFLGYSFHSTGYRFLIIKSDVPDMYVDTIMESRDATFFE 735
Score = 143 bits (361), Expect(3) = 1e-105, Method: Compositional
matrix adjust.
Identities = 89/174 (51%), Positives = 107/174 (61%), Gaps = 24/174 (14%)
Frame = +3
Query 52971 FIGLVNLYLILKFDLVKGSKC*VCVQSKQPRKPHKATDARNLAPLDLMHSNLCEM*GILT
53150
+ L N+ LI KF+LVK SKC VCV+SKQPRKPHKA +AR+LAPL+L+HS+LCEM GILT
Sbjct 460 LMRLANINLIPKFNLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVHSDLCEMNGILT
519
Query 53151 KGGKrfyyfyr*fy*ILLCV-SFKIKR*SFALF-------*DILSRS*KST*E-------
53285
KGGKR++ + V K K +F F + L R K
Sbjct 520 KGGKRYFLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEYF
579
Query 53286 ---------EN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
E+ IHERT +S QSNG+AE KNRTLTDLVNAML T+GLSKAWW
Sbjct 580 SNVFDEFCVEHGIIHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWW 633
Score = 137 bits (344), Expect(3) = 1e-105, Method: Compositional
matrix adjust.
Identities = 70/127 (55%), Positives = 91/127 (72%), Gaps = 5/127 (4%)
Frame = +3
Query 53700 SQDATSFENEFPMKIIHDVSSASSNEPMTPLKHFISV--EQTEESYVQNPMEDDNVTT*K
53873
S+DAT FENEFPMK + S S+E + P +H +S+ + E+S+V P EDD + T K
Sbjct 728 SRDATFFENEFPMK---NTPSDISHETIIPHEHELSIPIDHAEDSHVHIPEEDDTIVTRK
784
Query 53874 SKRSRTAKSFGDDYIVYLMDDTPSTSEEAYSYPHADFWKKAISSEMDFIMSNETW*VIEC
54053
SKR R AKSFG+D+IVYL++DTP+T EAY P AD WK+A+ SEM+ IMSN TW V++

Sbjct 785
844
SKRQRVAKSFGNDFIVYLVEDTPTTISEAYFSPDADLWKEAVRSEMESIMSNGTWEVVDR
Query 54054 PYGCNPI 54074
PYGC PI
Sbjct 845 PYGCQPI 851
Score = 305 bits (781), Expect = 5e-84, Method: Compositional matrix
adjust.
Identities = 186/506 (37%), Positives = 285/506 (56%), Gaps = 21/506 (4%)
Frame = -2
Query 82286 DQIVGDISKGVQTRSRIA-SFCEHFSFVSCVE--PNRVDEALLDVD---WVNAMHKELNN
82125
D IV SK R R+A SF F V VE P + EA D W A+ E+ +
Sbjct 778 DTIVTRKSK----RQRVAKSFGNDF-IVYLVEDTPTTISEAYFSPDADLWKEAVRSEMES
832
Query 82124 FARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFA
81945
N WE+V+RP IG KW+F+ K DG + R KARLVA+GYTQ EG DF +T++
Sbjct 833 IMSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYS
892
Query 81944 PVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKL
81765
PVARL IR L+A A ++ + ++QMDVK+AFLNG++ E +Y++QP GF + N V +L
Sbjct 893 PVARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVCRL
952
Query 81764 SKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGST
81585
K+LYGLKQAP+ W+E+ + L + F + + DT ++ + G + + +YVDDI+ +
Sbjct 953 IKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGESVMLCLYVDDILIFGS
1012
Query 81584 NDLFCEEFGKMMSKEFEMSMIGELSFFLGLQ-IKQLKDGIFISQSKYLKDMLKKFGLENA
81408
N EE ++S FEM +GE L ++ +++ G+ + QS Y++ +L +FG +
Sbjct 1013 NLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVREADGGVTLLQSHYVEKVLSRFGFSDC
1072
Query 81407 KPIKTPMATNGHLDLDEGGTIV-DQKLYRSIIGSLLYI-TASRPDVMFSVCMCARFQASP
81234
P TP + + L + I DQ Y IIGSL+Y+ +A+RPD+ ++V +RF + P

Sbjct 1073
1130
DPAPTPY--DPSVLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAVSKLSRFVSKP
Query 81233 REIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGR
81054
+ H +A +R+LRYLK T G+ Y G L GY D+++ + +TSG G
Sbjct 1131 GDDHWRALERVLRYLKGTMTYGIHY-TGNPKVLEGYCDANWISDADELYATSGYVFLFGG
1189
Query 81053 SLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLM---CDNES
80883
VSW S KQ + ST EAE + A+ W++ LLD ++ K +P + CDN++
Sbjct 1190 GAVSWKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFLLDLPVVEKPIPAISMNCDNQT
1249
Query 80882 AV-KLATNPVQHSRTKHIDIRHHFLR 80808
+ K+ ++ T+H+ R +R
Sbjct 1250 VITKVNSSRNNMKSTRHVKRRLKSVR 1275
Score = 154 bits (390), Expect(2) = 1e-40, Method: Compositional matrix
adjust.
Identities = 114/385 (30%), Positives = 185/385 (48%), Gaps = 20/385 (5%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
+SPVARL + L+A A Y + QMDVK AFLNG + EE+Y+++ F D N V
Sbjct 891 YSPVARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVC
950
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
+L K+LY LK+AP W+E + L + F V + ++ + G+ + + VDDI+
Sbjct 951 RLIKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGESVMLCLYVDDILIF
1010
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFL-IFQVKQLKDDTFISQTKYTQDILKMFEIK
142143
+N EE L+ +EM +GE + L I V++ + Q+ Y + +L F
Sbjct 1011 GSNLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVREADGGVTLLQSHYVEKVLSRFGFS
1070
Query 142144 DAKPIKT------LMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLY-VSRLHIILSVCMC
142302
D P T L+ N + + DQ +IGSL+YL +R I +V

Sbjct 1071
1123
DCDPAPTPYDPSVLLRKNRRI-------ARDQLTYSQIIGSLMYLASATRPDISYAVSKL
Query 142303 ARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSE
142482
+RF S + H R ++++LRYL T + + Y G+ L GY D +++ + +TS
Sbjct 1124 SRFVSKPGDDHWRALERVLRYLKGTMTYGIHY-TGNPKVLEGYCDANWISDADELYATSG
1182
Query 142483 TCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLL-
142659
G VSW S +Q + ST +A+ + +R L D +P +
Sbjct 1183 YVFLFGGGAVSWKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFLLDLPVVEKPIPAIS
1242
Query 142660 --CDNKSAIRLVDNPIEHSR-TKHI 142725
CDN++ I V++ + + T+H+
Sbjct 1243 MNCDNQTVITKVNSSRNNMKSTRHV 1267
Score = 37.7 bits (86), Expect(2) = 1e-40, Method: Compositional matrix
adjust.
Identities = 19/41 (46%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
+G K +F K G + R K RLVAKGY Q G DF +T+
Sbjct 851 IGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTY 891
Score = 67.8 bits (164), Expect(2) = 6e-14, Method: Compositional matrix
adjust.
Identities = 36/76 (47%), Positives = 43/76 (57%), Gaps = 0/76 (0%)
Frame = -3
Query 99148 DSAHARIVRPQGRTVRKALLVSNTTVLSVCQIPE*WVDIDANIHACADISLFSSYKCKGT
98969
D A +V + S VLSVC PE W+D ANIH CAD S+F+SY+ +
Sbjct 282 DKKSANVVTTETEEGTSGYGNSLPFVLSVCNSPEWWMDSGANIHVCADASMFTSYQVGRS
341
Query 98968 RALLMGNRSHACVLGV 98921
ALLMGN S A VLGV
Sbjct 342 GALLMGNGSRAHVLGV 357

Score = 34.3 bits (77), Expect(2) = 6e-14, Method: Composition-based
stats.
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query 98921 GKIILNFTSGKTVLLKDV*YVPFY*KRNLV 98832
G +IL FTSGKTV LK V +VP K+NLV
Sbjct 358 GTVILKFTSGKTVPLKSVQHVPSI-KKNLV 386
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix
adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 0/43 (0%)
Frame = +1
Query 53167 FITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
F+TFIDDSTRFCYVYLLK+KDEA +YFK Y E ENQL+RKIK
Sbjct 526 FLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIK 568
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix
adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 0/53 (0%)
Frame = -3
Query 98719 NFGCLSRSEKLNLIPKFDLIKGSKYQVCVQSKQPRKPHKAAETRNLTLLDFIQ 98561
+FGCL R +NLIPKF+L+K SK VCV+SKQPRKPHKAAE R+L L+ +
Sbjct 456 SFGCLMRLANINLIPKFNLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVH 508
Score = 53.9 bits (128), Expect(2) = 2e-10, Method: Compositional matrix
adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 0/40 (0%)
Frame = -3
Query 103126 DGTFYKIWCSKMILWLTVINCYHAAQGKPEQFTPEDERMF 103007
DG + IW +KM LWLT ++C+HAA+GKP PEDE F
Sbjct 30 DGKNFLIWKAKMELWLTAMSCFHAAEGKPANLPPEDEAKF 69
Score = 36.6 bits (83), Expect(2) = 2e-10, Method: Composition-based
stats.
Identities = 15/21 (71%), Positives = 18/21 (86%), Gaps = 0/21 (0%)
Frame = -2
Query 103214 MPNFLTIQKLDIKHFSVSGFA 103152

MP FLTIQK +++HFSV GFA
Sbjct 1 MPIFLTIQKPNVRHFSVRGFA 21
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix
adjust.
Identities = 23/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD---KKG
149439
D G ++ S+ F +F + G T + P+SNG+ ER N + T + +L K
Sbjct 573 DRGGEYFSNVFDEFCVEHGIIHERTPPFSPQSNGIAERKN-RTLTDLVNAMLSTAGLSKA
631
Query 149440 KWADQLPEVVWALNTTECRATGFTPF 149517
W + + LN + TPF
Sbjct 632 WWGEAILTACHVLNRVPTKNKEITPF 657
>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays]
gb|ACA21850.1| Fourf gag/pol protein [Zea mays]
Length=1279
Score = 149 bits (377), Expect(3) = 2e-105, Method: Compositional
matrix adjust.
Identities = 72/102 (71%), Positives = 83/102 (81%), Gaps = 0/102 (0%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
GEAIL CHVLN+VP K+K+ITPF++WEK+KLN+SYL T CL VNVPINKKRKLGPKT
Sbjct 594 GEAILIACHVLNRVPTKNKEITPFEEWEKRKLNLSYLRTWGCLAKVNVPINKKRKLGPKT
653
Query 53600 VDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*E 53725
VDC+FL Y+F+ GYRFLII S VPDM V TI+ESR F E
Sbjct 654 VDCIFLGYSFHSTGYRFLIIKSDVPDMYVDTIMESRDATFFE 695
Score = 143 bits (360), Expect(3) = 2e-105, Method: Compositional
matrix adjust.
Identities = 89/174 (51%), Positives = 107/174 (61%), Gaps = 24/174 (14%)
Frame = +3
Query 52971 FIGLVNLYLILKFDLVKGSKC*VCVQSKQPRKPHKATDARNLAPLDLMHSNLCEM*GILT

53150
Sbjct 420
479
+ L N+ LI KF+LVK SKC VCV+SKQPRKPHKA +AR+LAPL+L+HS+LCEM GILT
LMRLANINLIPKFNLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVHSDLCEMNGILT
Query 53151 KGGKrfyyfyr*fy*ILLCV-SFKIKR*SFALF-------*DILSRS*KST*E-------
53285
KGGKR++ + V K K +F F + L R K
Sbjct 480 KGGKRYFLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEFF
539
Query 53286 ---------EN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
E+ IHERT +S QSNG+AE KNRTLTDLVNAML T+GLSKAWW
Sbjct 540 SNLFDEFCVEHGIIHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWW 593
Score = 137 bits (344), Expect(3) = 2e-105, Method: Compositional
matrix adjust.
Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 5/127 (4%)
Frame = +3
Query 53700 SQDATSFENEFPMKIIHDVSSASSNEPMTPLKHFISV--EQTEESYVQNPMEDDNVTT*K
53873
S+DAT FENEFPMK + S +S+E + +H +S+ + E+S+V P EDD + T K
Sbjct 688 SRDATFFENEFPMK---NTPSDTSHETIISHEHELSIPIDHAEDSHVHIPEEDDTIVTRK
744
Query 53874 SKRSRTAKSFGDDYIVYLMDDTPSTSEEAYSYPHADFWKKAISSEMDFIMSNETW*VIEC
54053
SKR R AKSFG+D+IVYL++DTP+T EAYS P AD WK+A+ SEM+ IMSN TW V++
Sbjct 745 SKRQRVAKSFGNDFIVYLVEDTPTTISEAYSSPDADLWKEAVRSEMESIMSNGTWEVVDR
804
Query 54054 PYGCNPI 54074
PYGC PI
Sbjct 805 PYGCQPI 811
Score = 318 bits (816), Expect = 3e-88, Method: Compositional matrix
adjust.
Identities = 199/547 (36%), Positives = 302/547 (55%), Gaps = 21/547 (4%)
Frame = -2
Query 82286 DQIVGDISKGVQTRSRIA-SFCEHFSFVSCVE--PNRVDEALLDVD---WVNAMHKELNN
82125
D IV SK R R+A SF F V VE P + EA D W A+ E+ +

Sbjct 738
792
DTIVTRKSK----RQRVAKSFGNDF-IVYLVEDTPTTISEAYSSPDADLWKEAVRSEMES
Query 82124 FARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQIEGLDFGETFA
81945
N WE+V+RP IG KW+F+ K DG + R KARLVA+GYTQ EG DF +T++
Sbjct 793 IMSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYS
852
Query 81944 PVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKL
81765
PVARL IR L+A A ++ + ++QMDVK+AFLNG++ E +Y++QP GF + N V +L
Sbjct 853 PVARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVCRL
912
Query 81764 SKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGST
81585
K+LYGLKQAP+ W+E+ + L + F + + DT ++ + G + + +YVDDI+ +
Sbjct 913 IKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGESVMLCLYVDDILIFGS
972
Query 81584 NDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLKD-GIFISQSKYLKDMLKKFGLENA
81408
N EE ++S FEM +GE L +++ + D G+ + QS Y++ +L +FG +
Sbjct 973 NLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQSHYVEKVLSRFGFSDC
1032
Query 81407 KPIKTPMATNGHLDLDEGGTIV-DQKLYRSIIGSLLYI-TASRPDVMFSVCMCARFQASP
81234
P TP + + L + I DQ Y IIGSL+Y+ +A+RPD+ ++V +RF + P
Sbjct 1033 DPAPTPY--DPSVLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAVSKLSRFVSKP
1090
Query 81233 REIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGR
81054
+ H A +R+LRYLK T G+ Y + L GY D+++ + +TSG G
Sbjct 1091 GDDHWCALERVLRYLKGTMTYGIHYTGNPKV-LEGYCDANWISDADELYATSGYVFLFGG
1149
Query 81053 SLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYEIIFKNVPLM---CDNES
80883
VSW S KQ + ST EAE + A+ W++ LLD ++ K +P + CDN++
Sbjct 1150 GAVSWKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFLLDLPVVEKPIPAISMNCDNQT
1209
Query 80882 AV-KLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRFCS

80706
Sbjct 1210
1269
+ K+ ++ T+H+ R +R G I++ + T + LAD FTK L S
VITKVNSSRNNMKSTRHVKRRLKSVRKLKNSGVITVDYVHTSNNLADQFTKGLSRNVIES
Query 80705 LRSEMNV 80685
EM +
Sbjct 1270 ASREMGM 1276
Score = 154 bits (389), Expect(2) = 2e-40, Method: Compositional matrix
adjust.
Identities = 118/412 (29%), Positives = 196/412 (48%), Gaps = 20/412 (5%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
+SPVARL + L+A A Y + QMDVK AFLNG + EE+Y+++ F D N V
Sbjct 851 YSPVARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVC
910
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
+L K+LY LK+AP W+E + L + F V + ++ + G+ + + VDDI+
Sbjct 911 RLIKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGESVMLCLYVDDILIF
970
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFL-IFQVKQLKDDTFISQTKYTQDILKMFEIK
142143
+N EE L+ +EM +GE + L I V++ + Q+ Y + +L F
Sbjct 971 GSNLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQSHYVEKVLSRFGFS
1030
Query 142144 DAKPIKT------LMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLY-VSRLHIILSVCMC
142302
D P T L+ N + + DQ +IGSL+YL +R I +V
Sbjct 1031 DCDPAPTPYDPSVLLRKNRRI-------ARDQLTYSQIIGSLMYLASATRPDISYAVSKL
1083
Query 142303 ARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSE
142482
+RF S + H ++++LRYL T + + Y G+ L GY D +++ + +TS
Sbjct 1084 SRFVSKPGDDHWCALERVLRYLKGTMTYGIHY-TGNPKVLEGYCDANWISDADELYATSG
1142
Query 142483 TCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLL-

142659
Sbjct 1143
1202
G VSW S +Q + ST +A+ + +R L D +P +
YVFLFGGGAVSWKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFLLDLPVVEKPIPAIS
Query 142660 --CDNKSAIRLVDNPIEHSR-TKHIDIQHHFLRDHQQRRDIEINHVSTHHQL 142806
CDN++ I V++ + + T+H+ + +R + I +++V T + L
Sbjct 1203 MNCDNQTVITKVNSSRNNMKSTRHVKRRLKSVRKLKNSGVITVDYVHTSNNL 1254
Score = 37.4 bits (85), Expect(2) = 2e-40, Method: Compositional matrix
adjust.
Identities = 19/41 (46%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
+G K +F K G + R K RLVAKGY Q G DF +T+
Sbjct 811 IGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTY 851
Score = 67.8 bits (164), Expect(2) = 2e-13, Method: Compositional matrix
adjust.
Identities = 36/76 (47%), Positives = 43/76 (57%), Gaps = 0/76 (0%)
Frame = -3
Query 99148 DSAHARIVRPQGRTVRKALLVSNTTVLSVCQIPE*WVDIDANIHACADISLFSSYKCKGT
98969
D A +V + S VLSVC PE W+D ANIH CAD S+F+SY+ +
Sbjct 242 DKKSANVVTTETEEGTSGYGNSLPFVLSVCNSPEWWMDSGANIHVCADASMFTSYQVGRS
301
Query 98968 RALLMGNRSHACVLGV 98921
ALLMGN S A VLGV
Sbjct 302 GALLMGNGSRAHVLGV 317
Score = 33.1 bits (74), Expect(2) = 2e-13, Method: Compositional matrix
adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query 98921 GKIILNFTSGKTVLLKDV*YVPFY*KRNLV 98832
G +IL FTSGKTV LK V +VP K+NLV
Sbjct 318 GTVILKFTSGKTVPLKSVQHVPSI-KKNLV 346

Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix
adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%), Gaps = 0/43 (0%)
Frame = +1
Query 53167 FITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
F+TFIDDSTRFCYVYLLK+KDEA +YFK Y E ENQL+RKIK
Sbjct 486 FLTFIDDSTRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIK 528
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix
adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 0/53 (0%)
Frame = -3
Query 98719 NFGCLSRSEKLNLIPKFDLIKGSKYQVCVQSKQPRKPHKAAETRNLTLLDFIQ 98561
+FGCL R +NLIPKF+L+K SK VCV+SKQPRKPHKAAE R+L L+ +
Sbjct 416 SFGCLMRLANINLIPKFNLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVH 468
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix
adjust.
Identities = 17/29 (59%), Positives = 21/29 (72%), Gaps = 0/29 (0%)
Frame = -3
Query 103093 MILWLTVINCYHAAQGKPEQFTPEDERMF 103007
M LWLT ++C+HAA+GKP PEDE F
Sbjct 1 MELWLTAMSCFHAAEGKPANLPPEDEAKF 29
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix
adjust.
Identities = 24/86 (28%), Positives = 37/86 (43%), Gaps = 4/86 (5%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD---KKG
149439
D G +F S+ F +F + G T + P+SNG+ ER N + T + +L K
Sbjct 533 DRGGEFFSNLFDEFCVEHGIIHERTPPFSPQSNGIAERKN-RTLTDLVNAMLSTAGLSKA
591
Query 149440 KWADQLPEVVWALNTTECRATGFTPF 149517
W + + LN + TPF
Sbjct 592 WWGEAILIACHVLNRVPTKNKEITPF 617

gb|AAM22642.1|AF464767_1 gag/pol protein [Zea mays]
Length=222
Score = 335 bits (860), Expect = 8e-104, Method: Compositional matrix
adjust.
Identities = 170/183 (93%), Positives = 176/183 (96%), Gaps = 0/183 (0%)
Frame = +2
Query 128801 TPEGEALRVEGEQSRVTPNRNWQTPYLQYLHRGELPLDraearrlarraKSFVLLGDGKE
128980
PEGEALRV+ E+S VTPNRNWQT YLQYLHRGELPLDRAEARRLARRAKSFVLLGDGKE
Sbjct 40 APEGEALRVDEERSGVTPNRNWQTSYLQYLHRGELPLDRAEARRLARRAKSFVLLGDGKE
99
Query 128981 LYHRSPSGILQRCISIAEGQELLQEIHSGACGHHAAPRALVGNTFRQGFYWPTAVADATR
129160
LYHRSPSGILQRCISIAEGQELL+EIHSGACGHHAAP+ALVGN FRQGFYWPTAVADATR
Sbjct 100 LYHRSPSGILQRCISIAEGQELLREIHSGACGHHAAPQALVGNAFRQGFYWPTAVADATR
159
Query 129161 IVRTCQGCQFYARQTHLPAQALQTIPITWPFAVWGLDLVSPLQKAPGGYTHLLVAIDKFS
129340
IVRTC+GCQFYARQTH+PAQALQTIPITWPFAVWGLDLV LQKAPGGYTHLLVAIDKFS
Sbjct 160 IVRTCEGCQFYARQTHMPAQALQTIPITWPFAVWGLDLVGSLQKAPGGYTHLLVAIDKFS
219
Query 129341 KWI 129349
KWI
Sbjct 220 KWI 222
Score = 115 bits (289), Expect = 7e-28, Method: Compositional matrix
adjust.
Identities = 66/185 (36%), Positives = 99/185 (54%), Gaps = 5/185 (3%)
Frame = +2
Query 148619 PEGLQVTNDAEGHHIVNLIMTKDWRAPITLFLQGYYHSSDVNEAKRLKHRSKDFVLVGD-
148795
PEG + D E + ++W+ +L D EA+RL R+K FVL+GD
Sbjct 41 PEGEALRVDEERSGVTP---NRNWQTSYLQYLHRGELPLDRAEARRLARRAKSFVLLGDG
97
Query 148796 -QLYKKGISQPMLKCVTKTEGIQILREVHSETCGSHSGPRALAAKVIHQGFYWPAIICAK
148972
+LY + S + +C++ EG ++LRE+HS CG H+ P+AL QGFYWP +
Sbjct 98 KELYHRSPSGILQRCISIAEGQELLREIHSGACGHHAAPQALVGNAFRQGFYWPTAVADA

157
Query 148973 N*VTRSCEACQKFSPRSGNPSQFTKLIAHTWPLQRWGLDIVGPLPTAQGNLKFTFVIVEY
149152
+ R+CE CQ ++ ++ P+Q + I TWP WGLD+VG L A G V ++
Sbjct 158 TRIVRTCEGCQFYARQTHMPAQALQTIPITWPFAVWGLDLVGSLQKAPGGYTHLLVAIDK
217
Query 149153 FTK*I 149167
F+K I
Sbjct 218 FSKWI 222
Score = 39.3 bits (90), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 17/39 (44%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Frame = +3
Query 23499 SIYALLLKCFSHSEGQELMKIIHVGIYGYHIDSRALLGK 23615
S +L +C S +EGQEL++ IH G G+H +AL+G
Sbjct 104 SPSGILQRCISIAEGQELLREIHSGACGHHAAPQALVGN 142
Score = 34.3 bits (77), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 0/35 (0%)
Frame = +1
Query 23620 SFDKAFYWLKVVRDIEDLVRRCDNC*RYVRNQNQP 23724
+F + FYW V D +VR C+ C Y R + P
Sbjct 143 AFRQGFYWPTAVADATRIVRTCEGCQFYARQTHMP 177
Score = 21.9 bits (45), Expect(3) = 2e-06, Method: Compositional matrix
adjust.
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 0/33 (0%)
Frame = +2
Query 23759 PLQRWSLDIIGPMPLA*GNLKYAVMVAEYIYKW 23857
P W LD++G + A G + ++ + KW
Sbjct 189 PFAVWGLDLVGSLQKAPGGYTHLLVAIDKFSKW 221
>gb|ACN30754.1| unknown [Zea mays]
Length=472

Score = 327 bits (839), Expect = 2e-97, Method: Compositional matrix
adjust.
Identities = 173/473 (37%), Positives = 279/473 (59%), Gaps = 22/473 (5%)
Frame = +3
Query 91521 IGVVEHKDYSSIGYKVTNYFAVSSRFGTPDDFKKLVDEAHGLGLVVLLDIIHSYASADEL
91700
+ + EH Y S GY VTN+FA SSRFGTP++ K L+D AH LGL+VL+D++HS+AS++ L
Sbjct 1 MAIQEHSYYGSFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDVVHSHASSNTL
60
Query 91701 VGLSLFDGSNDCYFHSGKRGHHKYWGTRMFKYDDVDVLHFLLSNLNWWVTEYRIDGFQFH
91880
GL+ FDG++ YFHSG RGHH W +R+F Y + +VL FLLSN WW+ EY+ DGF+F
Sbjct 61 DGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKFDGFRFD
120
Query 91881 SLSSMLYTHNGFS-TFTGAMEEYCNQYVDKDALIYLILANEMLHRLHPDIVTIAEDATFY
92057
++SM+YTH+G TFTG EY D DA++YL+L N+++H L+P+ VTI ED +
Sbjct 121 GVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGM
180
Query 92058 PGLCEPITQGGLGFNYWVNLSIPEMWLWHLENVPEQEWSMNKIIKVLVSSN--QNMLSYV
92231
P P+ GG+GF+Y +++++ + W+ L ++ W M I+ L + + ++Y
Sbjct 181 PTFALPVHDGGVGFDYRMHMAVADKWI-DLLKQSDETWKMGDIVHTLTNRRWLEKCVTYA
239
Query 92232 ENHNQSISGRKSFAEIILNSRECSVGSVDD----NLIRASSLLKLMKLITFTTSGGAYLN
92399
E+H+Q++ G K+ A +++ ++D + R +L K+++LIT G YLN
Sbjct 240 ESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDRGIALHKMIRLITMGLGGEGYLN
299
Query 92400 FMGNEFAHPEKVEFP-----------MPSNDYSFELANRQWELLDKVFHKH--IFNFDKD
92540
FMGNEF HPE ++FP +P N+ S++ R+++L D + ++ + FD+
Sbjct 300 FMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDQA
359
Query 92541 VMSLDENERIISRGPPNILHCDDTSMVISFTRGPLFFIFNFNPQVSHQSYRVGVDEAGEY
92720
+ L++ ++ I + VI F +G L F+FNF+ S+ YR+G + G Y
Sbjct 360 MQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVY
419

Query 92721 QLIFNTDETKYGGCETLKSSQYMRRTSDKRADGCRNSLELALPSRSAQIYKLV 92879
+++ ++D +GG + + T+D D S + PSR+ +Y V
Sbjct 420 KVVLDSDAGLFGGFSRIHHAA-EHFTADCSHDNRPYSFSVYTPSRTCVVYAPV 471
>ref|NP_001132840.1| uncharacterized protein LOC100194332 [Zea mays]
gb|ACF81856.1| unknown [Zea mays]
Length=303
Score = 199 bits (506), Expect(2) = 4e-95, Method: Compositional matrix
adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Frame = +1
Query 13111 FFSVRNCLSFDNRVQRQVPICENSASISDPLDVARHGVASADSERAAVDVDLMNSTTEGD
13290
FFSVRNCLSFDNRVQRQVPICENSASISDPLDVARHGVASADSERAAVDVDLMNSTTEGD
Sbjct 182 FFSVRNCLSFDNRVQRQVPICENSASISDPLDVARHGVASADSERAAVDVDLMNSTTEGD
241
Query 13291 DGRSRDVVSSASGAGTALRFPAAAAQTEplhpssshghgrghhcspLDLELGMSLPAPSV
13470
DGRSRDVVSSASGAGTALRFPAAAAQTEPLHPSSSHGHGRGHHCSPLDLELGMSLPAPSV
Sbjct 242 DGRSRDVVSSASGAGTALRFPAAAAQTEPLHPSSSHGHGRGHHCSPLDLELGMSLPAPSV
301
Query 13471 GT 13476
GT
Sbjct 302 GT 303
Score = 175 bits (443), Expect(2) = 4e-95, Method: Compositional matrix
adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)
Frame = +2
Query 12881 GVPWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKFFLRQSSMGKKKRR
13060
GVPWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKFFLRQSSMGKKKRR
Sbjct 105 GVPWSEEEHRQFLAGLDKLGKGDWRGIARSYVPTRTPTQVASHAQKFFLRQSSMGKKKRR
164
Query 13061 SSLFDMVCACRHQHLSLFF 13117
SSLFDMVCACRHQHLSLFF
Sbjct 165 SSLFDMVCACRHQHLSLFF 183

Score = 138 bits (347), Expect = 1e-34, Method: Compositional matrix
adjust.
Identities = 105/106 (99%), Positives = 105/106 (99%), Gaps = 0/106 (0%)
Frame = +1
Query 12202 MLCEGGDDNNGRSGLRLFGVQVRIgggggagsasMKKSYSMDCLQLAAPHAcsslvssps
12381
MLCEGGDDNNGRSGLRLFGVQVRIGGGGGAGSASMKKSYSMDCLQLAAPHACSSLVSSPS
Sbjct 1 MLCEGGDDNNGRSGLRLFGVQVRIGGGGGAGSASMKKSYSMDCLQLAAPHACSSLVSSPS
60
Query 12382 ssslcsssspsslllsIDDGLQRGAADGYLSDGPHGRAVQERKKGT 12519
SSSLCSSSSPSSLLLSIDDGLQRGAADGYLSDGPHGRAVQERKKG
Sbjct 61 SSSLCSSSSPSSLLLSIDDGLQRGAADGYLSDGPHGRAVQERKKGV 106
>ref|NP_001146361.1| uncharacterized protein LOC100279939 precursor [Zea
mays]
gb|ACL53774.1| unknown [Zea mays]
Length=495
Score = 214 bits (546), Expect(2) = 8e-93, Method: Compositional matrix
adjust.
Identities = 115/222 (52%), Positives = 148/222 (67%), Gaps = 16/222 (7%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETK AD +GP+GI+ ++ +S + GW Y+L +T V DIPYLL NDAGGYAIA+
Sbjct 194 MTEETKKADWSGPMGIVYSVALSSVFGWVYLLALTSVVTDIPYLLDTGNDAGGYAIAQAL
253
Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
Y F+ RYG+G GGI CL I+AVA++LCG + VTSNSRM YAFSRDGAMPFS +W++VN+
Sbjct 254 YDTFRRRYGTGAGGIACLVIIAVAVFLCGTACVTSNSRMGYAFSRDGAMPFSHLWYRVNK
313
Query 111485 QDVPINAVWLSAFIALCMALPV------NCTVLLMTSCFLNSHPC**MNG***TKKNAVS
111646
Q+VP N VWLS +A MAL V LL S +H C +AV+
Sbjct 314 QEVPFNVVWLSVSVAFVMALTVCMHAMRKLFHLLSFSTARTTHIC----------AHAVA
363

Query 111647 GQPGGVPGDGVHRHGGAVHLVRAAGPVPGDSGAQVLRAGALQ 111772
G+PGGVPG GVHR G++H +RAA +P D G +V+R A+
Sbjct 364 GEPGGVPGHGVHRDAGSLHRLRAAHLLPRDDGEEVVRPRAIS 405
Score = 152 bits (383), Expect(2) = 8e-93, Method: Compositional matrix
adjust.
Identities = 96/158 (61%), Positives = 108/158 (68%), Gaps = 23/158 (15%)
Frame = +3
Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWA TTSVD+SLAQLIQVIILL+TGG GGGY+ASKY+VL + AIL+ H +INSL I
Sbjct 60 QWACTTSVDFSLAQLIQVIILLSTGGANGGGYLASKYVVLAIYTAILVVHGLINSLHIQW
119
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LS+ GQ A WNV
AGVFVL+I VP+VA ERASAEFVFT
Sbjct 120 LSWFGQLGALWNV----------------------AGVFVLVILVPSVAKERASAEFVFT
157
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHM 111032
H NTDN G GI S YI +GLLMSQY+ GYD SAHM
Sbjct 158 HLNTDN-GMGIHSKAYILAVGLLMSQYSSIGYDTSAHM 194
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix
adjust.
Identities = 40/63 (63%), Positives = 47/63 (75%), Gaps = 1/63 (2%)
Frame = +1
Query 107728 MTFGWFVAGAFTMAVGASMAEICSSFPTSGGLYYWSARLSGKRWAPFASWITGWYGKIVI
107907
MT GW V F V SMAEICS++PTSGGLYYWSA+L+G WAP ASW+TGW+ IV
Sbjct 1 MTLGWLVVATFNGCVALSMAEICSAYPTSGGLYYWSAKLAGNEWAPLASWVTGWF-NIVG
59
Query 107908 RWA 107916
+WA
Sbjct 60 QWA 62
>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length=1264

Score = 331 bits (849), Expect = 3e-92, Method: Compositional matrix
adjust.
Identities = 186/498 (37%), Positives = 286/498 (57%), Gaps = 12/498 (2%)
Frame = -2
Query 82193 PNRVDEALLDVD---WVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGV
82023
P + EA D W A+H E+++ N WE+ +RP +G KWVF+ K DG
Sbjct 753 PTTIAEAFASSDADDWKEAVHNEMDSILSNGTWEITDRPYGCKPVGCKWVFKKKLKPDGT
812
Query 82022 VVRNKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNG
81843
+ + KARLVA+GYTQ EG DF +T++PVAR+ IR+LL+ A ++ + ++QMDVK+AFLNG
Sbjct 813 IEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNG
872
Query 81842 KISELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDT
81663
++ E +Y+EQP GF + + V KL K+LYGLKQAP+ W+E+ L S F I + D
Sbjct 873 ELDEEIYMEQPDGFVVKGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINEADR
932
Query 81662 TLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQ
81483
++ + G + + +YVDDI+ TN E +SK F+M +GE L +++ +
Sbjct 933 CVYYRCGGGEGVILCLYVDDILIFGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIK
992
Query 81482 LKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTI-VDQKLYRSIIGSL
81306
GI +SQS Y++ +LK+FG KP TP + + L + I +DQ Y I+GSL
Sbjct 993 ADGGITLSQSHYVEKVLKRFGFSECKPSPTPY--DPSVTLRKNKRIGLDQLRYSQIVGSL
1050
Query 81305 LYIT-ASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIG
81129
+Y+ A+RPD+ F+V +RF ++P H A +R++RYL+ T + G+ Y G L G
Sbjct 1051 MYLAGATRPDISFAVSKLSRFMSNPGTDHWHALERVMRYLQGTMSYGIHY-SGQHAVLEG
1109
Query 81128 YSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWM
80949
YSDS++ + +TSG +G VSW S KQ + ST EAE + + W+
Sbjct 1110 YSDSNWISDADELYATSGYVFTIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWL
1169

Query 80948 KQTLLDYEIIFKNVPLM---CDNESAVKLATNPVQHSR-TKHIDIRHHFLRDHVGKGDIS
80781
++ L+D ++ K +P + CDN++ + T+ + + ++H+ R +R G IS
Sbjct 1170 RELLMDLPVVEKPIPAILMNCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVIS
1229
Query 80780 IYSIGTDDQLADIFTKPL 80727
+ I TD LAD FTK L
Sbjct 1230 VTYISTDKNLADPFTKGL 1247
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix
adjust.
Identities = 166/401 (41%), Positives = 215/401 (54%), Gaps = 50/401 (12%)
Frame = +3
Query 52980 LVNLYLILKFDLVKGSKC*VCVQSKQPRKPHKATDARNLAPLDLMHSNLCEM*GILTKGG
53159
L + LI +VKGSKC CVQSKQPRKPHKA + R+LAPL+L+HS+LCEM G+LTKGG
Sbjct 411 LATMSLIPNITIVKGSKCHSCVQSKQPRKPHKAAEERHLAPLELIHSDLCEMNGVLTKGG
470
Query 53160 Krfyyfyr*fy*ILLCVSFKIKR*SFAL---------F*DILSRS*KST*E---------
53285
KR++ C + +K AL + L R K
Sbjct 471 KRYFMTLIDDAS-RFCYVYLLKTKDEALDYFKIYKAEVENQLERKIKRLRSDRGGEFFPK
529
Query 53286 -------EN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKA-WWVRRS*MC
53441
E+ IHERT YS +SNG+AE KNRTLTDLVNAML+T GLSKA W C
Sbjct 530 VFDDFCAEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTCGLSKAWWGEAVLTSC
589
Query 53442 -VMF*IKFP*RTKKSHHSKTGKRRN*ISPICAPRFVWL**MCQLTRSEN*DQKLL-----
53603
V+ I K + G++ P + W M ++ N +KL
Sbjct 590 HVLNRIPMGKEEKTPYEKWVGRK-----PSLSYLRTWGC-MAKVNVPINKKRKLGPRTVD
643
Query 53604 IVFSLGMLSTSLDIGF*L*TLEYQTCWL-VQL*SQDATSFENEFPMKIIHDVSSASSN--
53774
VF LG S S+ F + E ++ + S+DAT FE+ FPMK IH S SS
Sbjct 644 CVF-LGYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIFPMKDIHSNSRYSSEII
702

Query 53775 -EPMTPLKHFISVEQTEESYVQNPMEDDNVTT*KSKRSRTAKSFGDDYIVYLMDDTPSTS
53951
E TP++ F EQ E ++ EDDN +SKR R KSFGDD+IVYL+DDTP+T
Sbjct 703 PEHNTPIESF---EQPHEIVLE---EDDNDAPKRSKRQRVEKSFGDDFIVYLVDDTPTTI
756
Query 53952 EEAYSYPHADFWKKAISSEMDFIMSNETW*VIECPYGCNPI 54074
EA++ AD WK+A+ +EMD I+SN TW + + PYGC P+
Sbjct 757 AEAFASSDADDWKEAVHNEMDSILSNGTWEITDRPYGCKPV 797
Score = 157 bits (398), Expect(2) = 2e-41, Method: Compositional matrix
adjust.
Identities = 121/417 (29%), Positives = 205/417 (49%), Gaps = 16/417 (4%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
+SPVAR+ + +LL+ A Y + QMDVK AFLNG + EE+Y+E+ F + V
Sbjct 837 YSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVC
896
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
KL K+LY LK+AP W+E L S F + + ++ + G+ + + VDDI+
Sbjct 897 KLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINEADRCVYYRCGGGEGVILCLYVDDILIF
956
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFI--SQTKYTQDILKMFEI
142140
TN E + + ++M +GE + +I +K +K D I SQ+ Y + +LK F
Sbjct 957 GTNIDVINEVKSFLSKSFDMKDLGEAD--VILNIKLIKADGGITLSQSHYVEKVLKRFGF
1014
Query 142141 KDAKPIKTLMGTNGHL--DLDIGGKSVDQKI*RSMIGSLLYLY-VSRLHIILSVCMCARF
142311
+ KP T + L + IG +DQ ++GSL+YL +R I +V +RF
Sbjct 1015 SECKPSPTPYDPSVTLRKNKRIG---LDQLRYSQIVGSLMYLAGATRPDISFAVSKLSRF
1071
Query 142312 QSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCL
142491
S+ H +++++RYL T + + Y G L GY D +++ + +TS
Sbjct 1072 MSNPGTDHWHALERVMRYLQGTMSYGIHY-SGQHAVLEGYSDSNWISDADELYATSGYVF
1130

Query 142492 FLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLL---C
142662
+G VSW S +Q + ST +A+ V+ +R+ L D +P + C
Sbjct 1131 TIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWLRELLMDLPVVEKPIPAILMNC
1190
Query 142663 DNKSAIRLVDNPIEHSR-TKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
DN++ I V + ++ + ++H+ + +R + I + ++ST L D F+ L
Sbjct 1191 DNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVISVTYISTDKNLADPFTKGL
1247
Score = 37.0 bits (84), Expect(2) = 2e-41, Method: Compositional matrix
adjust.
Identities = 20/41 (49%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
VG K VF K G + + K RLVAKGY Q G DF +T+
Sbjct 797 VGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTY 837
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix
adjust.
Identities = 58/104 (56%), Positives = 76/104 (73%), Gaps = 0/104 (0%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
GEA+L CHVLN++P+ ++ TP++ W +K ++SYL T C+ VNVPINKKRKLGP+T
Sbjct 582 GEAVLTSCHVLNRIPMGKEEKTPYEKWVGRKPSLSYLRTWGCMAKVNVPINKKRKLGPRT
641
Query 53600 VDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*ERI 53731
VDCVFL YA + YRFL++ S VPD+ V TI+ESR F E I
Sbjct 642 VDCVFLGYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHI 685
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix
adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%), Gaps = 0/43 (0%)
Frame = +1
Query 53167 FITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295

F+T IDD++RFCYVYLLK+KDEAL YFK Y E ENQL+RKIK
Sbjct 474 FMTLIDDASRFCYVYLLKTKDEALDYFKIYKAEVENQLERKIK 516
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix
adjust.
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 0/54 (0%)
Frame = -3
Query 98722 INFGCLSRSEKLNLIPKFDLIKGSKYQVCVQSKQPRKPHKAAETRNLTLLDFIQ 98561
INFG +SR ++LIP ++KGSK CVQSKQPRKPHKAAE R+L L+ I
Sbjct 403 INFGSMSRLATMSLIPNITIVKGSKCHSCVQSKQPRKPHKAAEERHLAPLELIH 456
Score = 59.7 bits (143), Expect(2) = 2e-09, Method: Compositional matrix
adjust.
Identities = 26/51 (51%), Positives = 34/51 (67%), Gaps = 0/51 (0%)
Frame = -3
Query 99073 VLSVCQIPE*WVDIDANIHACADISLFSSYKCKGTRALLMGNRSHACVLGV 98921
+ SV Q P W+D AN+H C+DI+LFSSY+ ++LMGN SHA V G
Sbjct 253 IFSVFQSPSWWLDTGANVHVCSDINLFSSYQGARDSSVLMGNGSHASVHGT 303
Score = 26.9 bits (58), Expect(2) = 2e-09, Method: Compositional matrix
adjust.
Identities = 13/22 (59%), Positives = 16/22 (73%), Gaps = 0/22 (0%)
Frame = -2
Query 98921 GKIILNFTSGKTVLLKDV*YVP 98856
G + L FTSGK V LK+V +VP
Sbjct 304 GTVDLKFTSGKIVQLKNVHHVP 325
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix
adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Frame = +1
Query 149269 DNGKQFDSHDFRDFYLSIGTKLAFTSVYHPKSNGVVERANGKIFTAIKKRLLDD---KKG
149439
D G +F F DF G T Y P+SNG+ ER N + T + +LD K
Sbjct 521 DRGGEFFPKVFDDFCAEHGIIHERTPPYSPESNGIAERKN-RTLTDLVNAMLDTCGLSKA
579
Query 149440 KWADQLPEVVWALNTTECRATGFTPFCLLHGSESMTPQE 149556

W + + T C P G E TP E
Sbjct 580 WWGEAV--------LTSCHVLNRIPM----GKEEKTPYE 606
>gb|AAK16154.1|AF326577_2 gag protein [Zea mays]
Length=286
Score = 301 bits (771), Expect = 7e-91, Method: Compositional matrix
adjust.
Identities = 159/231 (69%), Positives = 172/231 (74%), Gaps = 16/231 (7%)
Frame = +2
Query 144644 SAQAKVRQMIRDEEKRARE---------LEQEIALMQH-------EGQHDLQHGPPLQQR
144775
SA R+ RAR+ L+QE L Q EG QHG PLQ R
Sbjct 42 SAANDTRRGAESPRPRARDSHAGQGHLGLQQEPPLQQRAQPEDTREGYLGRQHGQPLQHR
101
Query 144776 APAGDLFIPQRGPFIPHAAAFQGINYLDERSPLAPQLQVSPWPANFRAGTYSKYNGNTDP
144955
A + PQ H A FQGINYLDERSPLAP LQV+PWPANFRAG Y KYNG+TDP
Sbjct 102 AQPENPRFPQHDYAPQHGAPFQGINYLDERSPLAPHLQVTPWPANFRAGAYPKYNGSTDP
161
Query 144956 A*YIMSYQVAIASSGGDDATMAKSFIIALEGPTLTWYTRLPPLSIDSWKGLRDKFLLNFQ
145135
A YIMSYQVA+AS+GGD+ATMAKSFIIALEGP LTW+TRLPPLSIDSW+ LRDKFLLNFQ
Sbjct 162 AQYIMSYQVAVASAGGDEATMAKSFIIALEGPALTWFTRLPPLSIDSWRSLRDKFLLNFQ
221
Query 145136 GYQPDTDALAELSLCK*QEKETLREYYRKFLTLKSQLPSVDDQIAIHYAIS 145288
GY+PDTDALAELSLCK EKETLREYYRKFLTLKSQLPSVDDQIAIHYAI+
Sbjct 222 GYRPDTDALAELSLCKQLEKETLREYYRKFLTLKSQLPSVDDQIAIHYAIN 272
Score = 137 bits (344), Expect = 2e-34, Method: Compositional matrix
adjust.
Identities = 74/190 (39%), Positives = 111/190 (58%), Gaps = 11/190 (6%)
Frame = +2
Query 35321 VRHLAQDEQHRRPQHQDLHQEGFPNEDDWYDNFHHGNFVFDDASPLSAELQATPWPPSYK
35500
++H AQ E R PQH Q G P F N++ D+ SPL+ LQ TPWP +++
Sbjct 98 LQHRAQPENPRFPQHDYAPQHGAP--------FQGINYL-DERSPLAPHLQVTPWPANFR
148

Query 35501 PPQLPVFDGHSDPKQFLMSYEATVSSYGGNASVMAKSFVMAVRSVAQTWYSSLRPGTITS
35680
P ++G +DP Q++MSY+ V+S GG+ + MAKSF++A+ A TW++ L P +I S
Sbjct 149 AGAYPKYNGSTDPAQYIMSYQVAVASAGGDEATMAKSFIIALEGPALTWFTRLPPLSIDS
208
Query 35681 WQKLKDLLLTSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIVIE
35860
W+ L+D L +FQG++ L C Q +E L+ Y R+FL L++Q P+V ++I I
Sbjct 209 WRSLRDKFLLNFQGYRPDTDALAELSLCKQLEKETLREYYRKFLTLKSQLPSVDDQIAIH
268
Query 35861 AMIK--GLRP 35884
I G RP
Sbjct 269 YAINASGRRP 278
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix
adjust.
Identities = 47/136 (35%), Positives = 69/136 (51%), Gaps = 0/136 (0%)
Frame = -1
Query 62061 AALADHLRAVAWLSKFQPHQSEKYDGMSNPSEFLQVYVTAITAAGGDTAVMATYFHVALS
61882
+ LA HL+ W + F+ KY+G ++P++++ Y A+ +AGGD A MA F +AL
Sbjct 132 SPLAPHLQVTPWPANFRAGAYPKYNGSTDPAQYIMSYQVAVASAGGDEATMAKSFIIALE
191
Query 61881 KPARTWLMNLAPGSIYSWEELCARFTSNFASAYQQHGVEAHLHAVRQEPRETLRAFISYF
61702
PA TW L P SI SW L +F NF A L +Q +ETLR + F
Sbjct 192 GPALTWFTRLPPLSIDSWRSLRDKFLLNFQGYRPDTDALAELSLCKQLEKETLREYYRKF
251
Query 61701 TKVRGTIPRISDASII 61654
++ +P + D I
Sbjct 252 LTLKSQLPSVDDQIAI 267
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix
adjust.
Identities = 36/115 (31%), Positives = 55/115 (48%), Gaps = 1/115 (1%)
Frame = +1
Query 119482 KYSGETRPELWLADYRLACHLGGTDDDNLIIRNLPLFLSYTARA*LEHLPPGQISNWDDL
119661

Sbjct 154
212
KY+G T P ++ Y++A G D+ + ++ + L A LPP I +W L
KYNGSTDPAQYIMSYQVAVASAGGDEATMA-KSFIIALEGPALTWFTRLPPLSIDSWRSL
Query 119662 VQAFAGNFQGTYVRPGNSRDLRSCHQQLGESLRDYIRRFSKQRTELPNVTDSDVI
119826
F NFQG +L C Q E+LR+Y R+F +++LP+V D I
Sbjct 213 RDKFLLNFQGYRPDTDALAELSLCKQLEKETLREYYRKFLTLKSQLPSVDDQIAI 267
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix
adjust.
Identities = 31/49 (63%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +1
Query 144586 QEPQPPKAERNPRGQAPTCLRASQGAPDDTRRGEEGPGTRARDCAHAAR 144732
QEPQ P+AER+ GQAPTC R SQ A +DTRRG E P RARD +HA +
Sbjct 18 QEPQSPEAERDTGGQAPTCFRISQSAANDTRRGAESPRPRARD-SHAGQ 65
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix
adjust.
Identities = 26/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query 100857 EYIGQFLAHLGELVDGEAFCVCLFSLSLTGTAFAWYTALPPNSVNSWNELENKFHEHFFA
101036
+YI + + EA F ++L G A W+T LPP S++SW L +KF +F
Sbjct 163 QYIMSYQVAVASAGGDEATMAKSFIIALEGPALTWFTRLPPLSIDSWRSLRDKFLLNFQG
222
Query 101037 GEYEL-GLADLGSV*QGREESVNDY 101108
+ LA+L Q +E++ +Y
Sbjct 223 YRPDTDALAELSLCKQLEKETLREY 247
>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length=1309
Score = 307 bits (786), Expect = 1e-84, Method: Compositional matrix
adjust.
Identities = 185/500 (37%), Positives = 286/500 (57%), Gaps = 10/500 (2%)
Frame = -2
Query 82196 EPNRVDEALLDVD---WVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDG
82026

Sbjct 797
856
EP + EA D W A+ E+++ N WE+ + P +G KW+FR K DG
EPRSLTEAYTSPDAEYWREAVLSEMDSIISNGTWEITDLPAGCKPVGCKWIFRRKRRPDG
Query 82025 VVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLN
81846
+ + KARLVA+G+TQ + D+ +T++PVARL IR+LLA A A+ + ++QMDVK+AFLN
Sbjct 857 TIEKYKARLVAKGFTQKKEEDYFDTYSPVARLPTIRVLLALAAAYKLLVHQMDVKTAFLN
916
Query 81845 GKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVD
81666
G++ E +Y++QP GF + + V +L K+LYGLKQAPR W+E+ + L + F + + D
Sbjct 917 GELEEEIYMQQPEGFVVKGQESKVCRLIKSLYGLKQAPRQWHEKFNNTLTTAGFCVNEAD
976
Query 81665 TTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIK
81486
++ + G + +YVDDI+ T+ E +SK F+M +GE L +++
Sbjct 977 KCVYYRFSGGKGVIMCLYVDDILIFGTDLEAIMETKLFLSKNFDMKDLGEADVILNIKLI
1036
Query 81485 QLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSL
81306
+ +DGI +SQS Y++ ++ +FG + KP+ TP + L EG V+Q LY IIGSL
Sbjct 1037 KGEDGITLSQSHYVEKVMTRFGHMDCKPVTTPYDPSYTLSKYEGEP-VNQLLYSQIIGSL
1095
Query 81305 LYI-TASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIG
81129
+Y+ +A+RPD+ ++VC AR+ ASP + H A R+LRYLK N+G+ Y G L G
Sbjct 1096 MYLSSATRPDISYAVCRLARYSASPGDRHWVALYRVLRYLKGAMNLGIKY-TGFPSVLEG
1154
Query 81128 YSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWM
80949
+SD+++ KSTSG L VSW S KQ+ ST EAE ++ + + W+
Sbjct 1155 FSDANWISDSDQMKSTSGYVFTLAGGAVSWRSSKQSVSTRSTKEAELVALDSAALEAEWL
1214
Query 80948 KQTLLDYEIIFKNVP---LMCDNESA-VKLATNPVQHSRTKHIDIRHHFLRDHVGKGDIS
80781
+ L D ++ K +P + CDN S +K+ + ++HI R R G I+
Sbjct 1215 RDLLSDLPMLAKPIPAVLVYCDNTSVLLKVNSRKDNQKSSRHIRRRLDSCRHARETGVIT
1274

Query 80780 IYSIGTDDQLADIFTKPLDE 80721
+ I ++ LAD FTK L +
Sbjct 1275 VDYIKSERNLADPFTKGLAQ 1294
Score = 110 bits (276), Expect(2) = 1e-47, Method: Compositional matrix
adjust.
Identities = 53/104 (51%), Positives = 75/104 (72%), Gaps = 0/104 (0%)
Frame = +2
Query 53420 GEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLGPKT
53599
GEA+L VC+VLN+VP ++++ TP++ ++ +K ++S+L T CL VNVP+ KKRKLGPKT
Sbjct 637 GEAVLTVCYVLNRVPPRNREATPYEGFKGRKPDLSHLRTWGCLAKVNVPLPKKRKLGPKT
696
Query 53600 VDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*ERI 53731
VDCVFL YA YRFL+++S ++ V I+ESR F E I
Sbjct 697 VDCVFLGYAHNSAAYRFLVVHSETSEIAVNVIMESRDVTFFESI 740
Score = 104 bits (260), Expect(2) = 1e-47, Method: Compositional matrix
adjust.
Identities = 66/171 (39%), Positives = 89/171 (52%), Gaps = 24/171 (14%)
Frame = +3
Query 52980 LVNLYLILKFDLVKGSKC*VCVQSKQPRKPHKATDARNLAPLDLMHSNLCEM*GILTKGG
53159
L ++ LI ++ VKG KC +CVQ+KQPRKP + R+ PL+L+HS++CEM GI+ KGG
Sbjct 466 LSDMSLIPEYKHVKGVKCGICVQAKQPRKPFHTVEGRSTTPLELIHSDICEMNGIIIKGG
525
Query 53160 Krfyyfyr*fy*ILLCVSF------------------------KIKR*SFALF*DILSRS
53267
KR++ + KIKR + LS
Sbjct 526 KRYFLTLIDDATRFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIKRLRSDRGGEYLSNL
585
Query 53268 *KST*EEN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWW 53420
+E IHE T YS QSNGVAE KNRT+ DL NA+L++SG+ WW
Sbjct 586 FDEYCKECGIIHETTAPYSPQSNGVAERKNRTVCDLANALLQSSGMPDIWW 636
Score = 146 bits (368), Expect(2) = 9e-37, Method: Compositional matrix
adjust.
Identities = 115/413 (28%), Positives = 205/413 (50%), Gaps = 8/413 (2%)

Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
+SPVARL + +LLA A Y + QMDVK AFLNG ++EE+Y+++ F + V
Sbjct 882 YSPVARLPTIRVLLALAAAYKLLVHQMDVKTAFLNGELEEEIYMQQPEGFVVKGQESKVC
941
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
+L K+LY LK+AP W+E + L + F V + ++ + G + + VDDI+
Sbjct 942 RLIKSLYGLKQAPRQWHEKFNNTLTTAGFCVNEADKCVYYRFSGGKGVIMCLYVDDILIF
1001
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKD
142146
T+ ++ E + + ++M +GE + L ++ + +D +SQ+ Y + ++ F D
Sbjct 1002 GTDLEAIMETKLFLSKNFDMKDLGEADVILNIKLIKGEDGITLSQSHYVEKVMTRFGHMD
1061
Query 142147 AKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYL-YVSRLHIILSVCMCARFQSDA
142323
KP+ T + L G+ V+Q + +IGSL+YL +R I +VC AR+ +
Sbjct 1062 CKPVTTPYDPSYTLS-KYEGEPVNQLLYSQIIGSLMYLSSATRPDISYAVCRLARYSASP
1120
Query 142324 KECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFLGR
142503
+ H + ++LRYL + + Y G L G+ D +++ KSTS L
Sbjct 1121 GDRHWVALYRVLRYLKGAMNLGIKY-TGFPSVLEGFSDANWISDSDQMKSTSGYVFTLAG
1179
Query 142504 SLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTLRDFG*NLSKVPLL---CDNKS
142674
VSW S +Q+ ST +A+ + ++ +R L D +P + CDN S
Sbjct 1180 GAVSWRSSKQSVSTRSTKEAELVALDSAALEAEWLRDLLSDLPMLAKPIPAVLVYCDNTS
1239
Query 142675 AIRLVDNPIEHSR-TKHIDIQHHFLRDHQQRRDIEINHVSTHHQL-DIFSPCL
142827
+ V++ ++ + ++HI + R ++ I ++++ + L D F+ L
Sbjct 1240 VLLKVNSRKDNQKSSRHIRRRLDSCRHARETGVITVDYIKSERNLADPFTKGL 1292
Score = 33.1 bits (74), Expect(2) = 9e-37, Method: Compositional matrix
adjust.

Identities = 16/41 (39%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
VG K +F K+ G + + K RLVAKG+ Q D+ +T+
Sbjct 842 VGCKWIFRRKRRPDGTIEKYKARLVAKGFTQKKEEDYFDTY 882
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix
adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 13/125 (10%)
Frame = +3
Query 53700 SQDATSFENEFPMKIIHDVSSASSNEPMTPLKHFISVEQTEESYVQNPMEDDNVTT*KSK
53879
S+D T FE+ FPM+ V+ P P + + + S V + D + +SK
Sbjct 731 SRDVTFFESIFPMRDKEVVA------PDGPSRTY-----SLPSSVNDQTPDLELR--RSK
777
Query 53880 RSRTAKSFGDDYIVYLMDDTPSTSEEAYSYPHADFWKKAISSEMDFIMSNETW*VIECPY
54059
R RT KS GDDYI+YL+D+ P + EAY+ P A++W++A+ SEMD I+SN TW + + P
Sbjct 778 RQRTEKSLGDDYIIYLVDEEPRSLTEAYTSPDAEYWREAVLSEMDSIISNGTWEITDLPA
837
Query 54060 GCNPI 54074
GC P+
Sbjct 838 GCKPV 842
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix
adjust.
Identities = 29/43 (67%), Positives = 36/43 (84%), Gaps = 0/43 (0%)
Frame = +1
Query 53167 FITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIK 53295
F+T IDD+TRFCY+YLL++KDEAL +FK Y E ENQL +KIK
Sbjct 529 FLTLIDDATRFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIK 571
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix
adjust.
Identities = 23/54 (43%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
Frame = -3
Query 98722 INFGCLSRSEKLNLIPKFDLIKGSKYQVCVQSKQPRKPHKAAETRNLTLLDFIQ 98561

+NF + R ++LIP++ +KG K +CVQ+KQPRKP E R+ T L+ I
Sbjct 458 VNFEAIKRLSDMSLIPEYKHVKGVKCGICVQAKQPRKPFHTVEGRSTTPLELIH 511
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix
adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Frame = -3
Query 99043 WVDIDANIHACADISLFSSYKCKGTRALLMGNRSHACVLGVVKSF 98909
W+D A +H CAD S+FSS++ + +LMGN A V G + +
Sbjct 318 WMDSGATVHICADRSMFSSFQGFNSAPVLMGNGVPAAVRGTGQVY 362
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix
adjust.
Identities = 18/41 (44%), Positives = 24/41 (59%), Gaps = 1/41 (2%)
Frame = -2
Query 98954 GEQITCVCSWCGKIILNFTSGKTVLLKDV*YVPFY*KRNLV 98832
G + G++ L TSGKT++LKDV YVP RNL+
Sbjct 348 GNGVPAAVRGTGQVYLKLTSGKTLVLKDVLYVPSM-SRNLI 387
>gb|AAD55677.1| putative transposase protein [Zea mays]
Length=793
Score = 299 bits (765), Expect = 2e-84, Method: Compositional matrix
adjust.
Identities = 162/433 (37%), Positives = 240/433 (55%), Gaps = 12/433 (3%)
Frame = +1
Query 6991 WKKRGALSSEWVAKTDAFLDHAFARSETGTDVRCPCSKCRNINFLDRRTMSIHICKNGYM
7170
W + ++EW F+ F + G CPCS+CR +++ + + H+ G+
Sbjct 8 WMRMHFTTNEWQTNFRKFIQTTFGGTTRGETAPCPCSRCRCMSYRTQSQVQSHLVIRGFD
67
Query 7171 PGY-EVWVHHGEDPPPRIVSEVQSHEEEDYDRMEEMLDDVRHEFVTVDSENPGQPTEFED
7347
+ E + + V E D + E++ + + D + +
Sbjct 68 ESFIEEGNQANDSDEGNAAAVVNDDETGDSGSVTELVSTLISGAIHEDIIG-----KINE
122
Query 7348 PATPEVQKFFELLKAAEEPLHEHTK-VTVLVFVTRLMAIKSKFAFSNNCYKELLNVISDV
7524

Sbjct 123
182
+ + FF LL A++ L+ K VT + F+ RL IK F S + +L + V
EPNAKAKAFFNLLTEAKKELYPGCKEVTKVSFIVRLFQIKCMFGLSKSALAAVLQLFRLV
Query 7525 LPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKCTVCGERRFVEVE
7704
LPE H +P + + +K++ LG+DY+KI C N+C+LF KE A C CGE R+
Sbjct 183 LPEGHCVPDTLDKVQKVIHDLGLDYQKIHACVNDCLLFRKEYAAMDTCPTCGESRWQPTI
242
Query 7705 NDDGLTVTTKIA-RKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVRENPNVMVHPADTD
7881
+ T K A RK LRY P+IPRL+RL+++ T+ +MRWHKEG+ ++ N M HPAD+
Sbjct 243 SGHHEEATNKRAPRKILRYFPVIPRLQRLYMNSTTSEYMRWHKEGLVQD-NKMRHPADSK
301
Query 7882 AWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYNLPPALCMKYEF
8061
AWK +D FA + RN+R GLA+DGF+PF + +Y+ WPV +PYNLPP LC+K F
Sbjct 302 AWKHVDNIYKDFATDPRNIRLGLASDGFNPFGMVNVAYTIWPVILIPYNLPPWLCLKQPF
361
Query 8062 IFLCLIIPGPDHPGTKIDVMMRPLIEELKILWE-GVEAYDCYKKQKFNLRAAFLWSIHDF
8238
L ++IPG + PG IDV ++PLI+ELK LWE GVE +D +K+ FNLRA LW+I+DF
Sbjct 362 WMLSMLIPGKNSPGNNIDVYLQPLIDELKDLWEKGVETWDAKEKKNFNLRAILLWTINDF
421
Query 8239 MAYGV--RWSCHG 8271
AYG+ WS G
Sbjct 422 PAYGMLSGWSTKG 434
>ref|NP_001169213.1| uncharacterized protein LOC100383069 [Zea mays]
gb|ACN31968.1| unknown [Zea mays]
Length=217
Score = 278 bits (710), Expect = 1e-83, Method: Compositional matrix
adjust.
Identities = 131/194 (68%), Positives = 156/194 (80%), Gaps = 5/194 (3%)
Frame = +3
Query 101178 LAFNGLLSYLRDKLDGTQFFSIAELHQRALACESRFKETSKSATRTIHLIEHD--SSDDE
101351
+AF+GL YL+++L+G QFF++A+LHQRA ACESR KE ++ + ++EH+ SSDDE
Sbjct 1 MAFDGLHYYLKERLEGIQFFTLAQLHQRASACESRSKELVRTVHHNVPIVEHNQSSSDDE

60
Query 101352 SADVYTAEFIWPTKAKSLACSSLQPVQKNRQEEIKFTFNVAKCDKIFDELLKNDNIKLTH
101531
VYTAE +WP +AKS ACSSLQ VQK RQEE+KFTFNV KCDKIFDELLKN NIK+ +
Sbjct 61 PKKVYTAEIVWPEQAKSSACSSLQSVQKERQEEVKFTFNVGKCDKIFDELLKNGNIKINY
120
Query 101532 NIPPIDELKRRAYCKWHNSFSHATNDCNVFRRQVQSAINEGRLAFQEMQVDTQPFPINTI
101711
IPP DELKRRAYCKWHNSFSHATNDCNVFRRQ+QSAINEGRL FQE DT+PFP+N I
Sbjct 121 IIPPADELKRRAYCKWHNSFSHATNDCNVFRRQIQSAINEGRLKFQE---DTEPFPMNVI
177
Query 101712 DVACEKVLVWPEMA 101753
D +KVL+ P A
Sbjct 178 DFNGKKVLIRPNTA 191
>gb|AAL66758.1|AF464738_9 putative pol protein [Zea mays]
Length=313
Score = 279 bits (713), Expect = 9e-83, Method: Compositional matrix
adjust.
Identities = 140/197 (71%), Positives = 160/197 (81%), Gaps = 8/197 (4%)
Frame = +1
Query 141685 MDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVYKLSKALYVLKKAPSTWYECLKDFLIS
141864
MDVK+AFLNGPIKEEVYVE+ P FE+DRYP+HVYKLSKALY LK+AP WYECL+DFLI+
Sbjct 1 MDVKSAFLNGPIKEEVYVEQPPGFEDDRYPDHVYKLSKALYGLKQAPRAWYECLRDFLIA
60
Query 141865 NSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFGSTNQKSCEEFSRLMVQKYEMSMMGEL
142044
N+FKV K TLFTKTCDGDLFVCQI VDDIIFGSTNQKSCEEFSR+M+ K+EMSMMGEL
Sbjct 61 NAFKVGKVDPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMMHKFEMSMMGEL
120
Query 142045 NYFLIFQVKQLKDDTFISQTKYTQDILKMFEIKDAKPIKTLMGTNGHLDLDIG-----GK
142209
FL FQVKQLKD TFISQ K+TQD+LK F +KDAKP KT GT+GH DL+ G G
Sbjct 121 TNFLGFQVKQLKDGTFISQMKHTQDLLKRFGMKDAKPAKTPTGTDGHPDLNKGDFDYAGC
180
Query 142210 SVDQKI*RSMIGSLLYL 142260

D+K S +G+ +L
Sbjct 181 KADRK---STLGTCQFL 194
Score = 263 bits (672), Expect = 2e-77, Method: Compositional matrix
adjust.
Identities = 129/200 (65%), Positives = 156/200 (78%), Gaps = 8/200 (4%)
Frame = -2
Query 81872 MDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLS
81693
MDVKSAFLNG I E VYVEQPPGFED + P+HV+KLSKALYGLKQAPRAWYE LRDFL++
Sbjct 1 MDVKSAFLNGPIKEEVYVEQPPGFEDDRYPDHVYKLSKALYGLKQAPRAWYECLRDFLIA
60
Query 81692 KDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNDLFCEEFGKMMSKEFEMSMIGEL
81513
FK+GKVD TLFTK DLFVCQIYVDDIIFGSTN CEEF ++M +FEMSM+GEL
Sbjct 61 NAFKVGKVDPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMMHKFEMSMMGEL
120
Query 81512 SFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEG-----GT
81348
+ FLG Q+KQLKDG FISQ K+ +D+LK+FG+++AKP KTP T+GH DL++G G
Sbjct 121 TNFLGFQVKQLKDGTFISQMKHTQDLLKRFGMKDAKPAKTPTGTDGHPDLNKGDFDYAGC
180
Query 81347 IVDQKLYRSIIGSLLYITAS 81288
D+K S +G+ ++ S
Sbjct 181 KADRK---STLGTCQFLGRS 197
Score = 218 bits (556), Expect = 7e-62, Method: Compositional matrix
adjust.
Identities = 103/140 (74%), Positives = 114/140 (81%), Gaps = 0/140 (0%)
Frame = -2
Query 81122 DSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQ
80943
D DYAGCK DRKST G CQFLGRSLVSWSSKKQ SVALSTA+ EY++AG CCAQLLWM+Q
Sbjct 174 DFDYAGCKADRKSTLGTCQFLGRSLVSWSSKKQTSVALSTAKVEYVAAGQCCAQLLWMRQ
233
Query 80942 TLLDYEIIFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGT
80763
TL D+ V L+CDNESA+ LA NPV+HSRTKHIDIRHHF+RDH KGDI IY I T

Sbjct 234
293
TLQDFGYNLSKVSLLCDNESAICLADNPVEHSRTKHIDIRHHFVRDHQQKGDIDIYHIST
Query 80762 DDQLADIFTKPLDETRFCSL 80703
++QLADIFTKPLDE F L
Sbjct 294 ENQLADIFTKPLDEKTFYRL 313
Score = 176 bits (446), Expect = 2e-47, Method: Compositional matrix
adjust.
Identities = 90/132 (68%), Positives = 103/132 (78%), Gaps = 1/132 (1%)
Frame = +1
Query 142435 DIDYVEWKLDRKSTSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQ
142614
D DY K DRKST TC FLGRSLVSWSSK+Q VALST K +Y+ A QLL MRQ
Sbjct 174 DFDYAGCKADRKSTLGTCQFLGRSLVSWSSKKQTSVALSTAKVEYVAAGQCCAQLLWMRQ
233
Query 142615 TLRDFG*NLSKVPLLCDNKSAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVST
142794
TL+DFG NLSKV LLCDN+SAI L DNP+EHSRTKHIDI+HHF+RDHQQ+ DI+I H+ST
Sbjct 234 TLQDFGYNLSKVSLLCDNESAICLADNPVEHSRTKHIDIRHHFVRDHQQKGDIDIYHIST
293
Query 142795 HHQL-DIFSPCL 142827
+QL DIF+ L
Sbjct 294 ENQLADIFTKPL 305
>gb|AAD12998.1| pol polyprotein [Zea mays]
Length=998
Score = 296 bits (757), Expect = 4e-82, Method: Compositional matrix
adjust.
Identities = 172/505 (34%), Positives = 280/505 (55%), Gaps = 16/505 (3%)
Frame = -2
Query 82157 WVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQ
81978
W++AM EL + N+VW+L P +G KWV++ K + G + R KARLVA+G+TQ
Sbjct 492 WLSAMEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDSRGNIERYKARLVAKGFTQ
551
Query 81977 IEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFE
81798

Sbjct 552
611
EG+D+ ETF+PV+ ++ RI++A +++L+QMDVK+AFLNG++ E V++ QP GF
REGIDYHETFSPVSTKDSFRIIMALVAHFDLELHQMDVKTAFLNGELEENVFMAQPKGFV
Query 81797 DPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTK-RIGKDLFVC
81621
+ + L +++YGLKQA R WY + + F+ K D ++ K R GK +F+
Sbjct 612 VSGKEHMGCHLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKEDNCIYAKFRKGKYIFLV
671
Query 81620 QIYVDDIIFGSTN-DLFCEEFGKMMSKEFEMSMIGELSFFLGLQIK--QLKDGIFISQSK
81450
+YVDDI+ S++ DL E G +S F+M +GE S+ LG++I+ + K + +SQ
Sbjct 672 -LYVDDILLASSDKDLLAETKG-FLSSNFDMKDMGEASYVLGIEIRRDRQKRVLGLSQKS
729
Query 81449 YLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQK------LYRSIIGSLLYI-TA
81291
Y++++LK++ + P+ + +K Y S IGS++Y
Sbjct 730 YIENVLKRYNMHKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVC
789
Query 81290 SRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDY
81111
+RPD+ F+ M R+Q +P H KA K+ LRYL+ T + L Y + +++GY+D+D+
Sbjct 790 TRPDLAFTTGMLGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADW
849
Query 81110 AGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLD
80931
GC+ KSTSG L +SW S KQ + A ST AE+++ Q +W+K+ +
Sbjct 850 GGCRDTLKSTSGYVFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPG
909
Query 80930 YEI---IFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTD
80760
+ I + + + CDNE AV + N K+IDI+ + +++ + I + I T
Sbjct 910 LRVVDSIERPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTH
969
Query 80759 DQLADIFTKPLDETRFCSLRSEMNV 80685
LAD TK L + F + M +
Sbjct 970 QMLADPLTKGLPPSVFSKHAAGMGL 994
Score =
149 bits (376), Expect(2) = 5e-41, Method: Compositional matrix

adjust.
Identities = 113/415 (27%), Positives = 193/415 (47%), Gaps = 18/415 (4%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
FSPV+ +SF I++A H+ +L QMDVK AFLNG ++E V++ + F +
Sbjct 561 FSPVSTKDSFRIIMALVAHFDLELHQMDVKTAFLNGELEENVFMAQPKGFVVSGKEHMGC
620
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
L +++Y LK+A WY + F+ K+ ++ K G + VDDI+
Sbjct 621 HLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKEDNCIYAKFRKGKYIFLVLYVDDILLA
680
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFI--SQTKYTQDILKMFEI
142140
S+++ E + ++M MGE +Y L ++++ + + SQ Y +++LK + +
Sbjct 681 SSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIRRDRQKRVLGLSQKSYIENVLKRYNM
740
Query 142141 K--DAKPIKTLMGTN-GHLDLDIGG------KSVDQKI*RSMIGSLLYLYV-SRLHIILS
142290
+A P + G G KSV S IGS++Y V +R + +
Sbjct 741 HKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYA---SAIGSIMYAQVCTRPDLAFT
797
Query 142291 VCMCARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRK
142470
M R+Q + H + VK+ LRYL T L Y + ++ +VGY D D+ + K
Sbjct 798 TGMLGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGCRDTLK
857
Query 142471 STSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQ---TLRDFG*NL
142641
STS L +SW S +Q A ST A+++ Q + +++ LR
Sbjct 858 STSGYVFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIE
917
Query 142642 SKVPLLCDNKSAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL
142806
+ + CDN+ A+ N K+IDI+ + +++ I++ H+ TH L
Sbjct 918 RPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTHQML 972

Score = 44.3 bits (103), Expect(2) = 5e-41, Method: Compositional matrix
adjust.
Identities = 21/41 (51%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
VG K V+ K+D G + R K RLVAKG+ Q G+D+ ETF
Sbjct 521 VGCKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHETF 561
Score = 49.3 bits (116), Expect(2) = 6e-10, Method: Compositional matrix
adjust.
Identities = 33/105 (31%), Positives = 47/105 (45%), Gaps = 6/105 (6%)
Frame = +2
Query 53411 GMVGEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLG
53590
G+ EA+ H+LN+VP K TP++ W +K ++Y C + + KL
Sbjct 231 GLWMEALKTAMHILNRVPSKSVARTPYELWTGRKPTLNYFHIWGCPAEARIFNPGQGKLD
290
Query 53591 PKTVDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*E 53725
+T C F+ Y GYRF PD IE+R IF E
Sbjct 291 ERTTSCHFIGYPDRSKGYRFY-----CPDRQT-KFIETRHAIFLE 329
Score = 39.7 bits (91), Expect(2) = 6e-10, Method: Compositional matrix
adjust.
Identities = 19/46 (41%), Positives = 26/46 (57%), Gaps = 0/46 (0%)
Frame = +3
Query 53286 EN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWWV 53423
EN + + + Q NGVAE +NRTL D+V +ML S L W+
Sbjct 189 ENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSNLPLGLWM 234
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix
adjust.
Identities = 27/73 (37%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +1
Query 53113 CIPIYVRCKEY*LKVASDFITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKI
53292
C P VR + + FITF DD +R+ Y+Y +K + EAL FK + E ENQ KI
Sbjct 103 CGPFPVRT----VDGFNSFITFTDDYSRYGYIYPIKERSEALDKFKQFKAEVENQHDLKI
158

Query 53293 KLFMRGQCHTHYN 53331
K+ + +Y
Sbjct 159 KIVRSDRGGEYYG 171
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix
adjust.
Identities = 40/179 (22%), Positives = 75/179 (42%), Gaps = 27/179 (15%)
Frame = +2
Query 129239 ITWPFAVWGLDLVSPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSE---QAVAFFTNI
129409
I PF V +D G+ + D +S++ + P+ RSE + F +
Sbjct 102 ICGPFPVRTVD----------GFNSFITFTDDYSRYGYIYPIKE-RSEALDKFKQFKAEV
150
Query 129410 IHRFGVPNSII-TNNGTQFTGRK---------FLDFCEDHHIRVDWAIVAHPMTNGQVER
129559
++ + I+ ++ G ++ GR F F ++ I ++ P NG ER
Sbjct 151 ENQHDLKIKIVRSDRGGEYYGRHTEYGQVPGPFARFLRENGIVAQYSTPGEPQQNGVAER
210
Query 129560 ANGMILQGLKPRI-YNDLNKFGKRWMKELPLVVWSLRTTPSRATGFTPFFLVYGAEAIL
129733
N ++ ++ + Y++L G WM+ L + L PS++ TP+ L G + L
Sbjct 211 RNRTLMDMVRSMLSYSNL-PLG-LWMEALKTAMHILNRVPSKSVARTPYELWTGRKPTL
267
>gb|AAL76006.1|AF466646_14 putative retrotransposon protein [Zea mays]
Length=918
Score = 294 bits (753), Expect = 6e-82, Method: Compositional matrix
adjust.
Identities = 148/323 (46%), Positives = 208/323 (64%), Gaps = 10/323 (3%)
Frame = -1
Query 40665 PWRPSHSVYGKSTIKENHLVNM--RGRYFRDLSVVRADEGEKTCPHPEENEVVVFRSFLK
40492
P +PSH +GKST+ + L M G + + + GE+T P PE++E+V+F+SFLK
Sbjct 71 PSKPSHLDFGKSTVSKADLSKMVKSGYFTENQKKLLRFGGEETTPKPEKDEIVIFKSFLK
130
Query 40491 AGLRLPLSSFVVEVLKIFEVYLHQLTPEAIIRLNIFVWAVRSQGLKPDAKSFCNMHELSY
40312

Sbjct 131
190
AGLR PL + E+LK F +Y HQLTP AI+RLN+++WA+RSQ ++P A SFC +HEL Y
AGLRFPLHGIIAEILKNFGIYFHQLTPNAIVRLNVYIWALRSQAVEPFADSFCRVHELHY
Query 40311 ETIPWGKEQYHNNFGCYSFVSRSGSSCPVPTFRKRWPSGWMTEWFYVKNDLKAREDIKGI
40132
+T K+ H NFGCY+F R + PV ++R +W +GW +EWFYVK D +D + +
Sbjct 191 QT-KARKDGLHENFGCYNFAYRKTTKYPVISYRSKWAAGWKSEWFYVKVD----DDKEKL
245
Query 40131 IMRPIWQSFGLRRPKVEM--NEAAEECQRAFGVVCSFIGTRDLVQEHIAFRVWPLAEKWE
39958
+ P+ +FG RP+ M ++ F ++ I TRDLVQE +AF+V+P ++WE
Sbjct 246 VQSPLELTFGETRPQCHMLPEGPTQKAMYEFKIIAENISTRDLVQEFLAFKVFPSVKEWE
305
Query 39957 MPQETIKEADEGGLIRFKYTFKFGDKFIEPDDEWLKSIDNLSDELLGTYSKAEDNAMSAA
39778
MP+ E +G L+R Y FKF F P EWL +I+ + +E+LG YSK ED M+AA
Sbjct 306 MPK-LEGEKKKGELVRLPYYFKFKKYFKTPCQEWLDTIEVMCNEILGNYSKKEDQLMTAA
364
Query 39777 FGGRKKKRLNRVFDAIGFVYPDY 39709
FG R K+RLNRV DA+GF YPDY
Sbjct 365 FGTRPKQRLNRVLDALGFEYPDY 387
Score = 70.1 bits (170), Expect(2) = 8e-21, Method: Compositional matrix
adjust.
Identities = 69/262 (26%), Positives = 117/262 (45%), Gaps = 55/262 (21%)
Frame = -1
Query 39015 YILRHASGKKLSEKEEQEAQHYAQKLKYPKGALIFNGSGEEDFLYCLPDSKEISVCREMS
38836
+ ++ G+ L++ E +E + YAQ Y GAL+F G +E L C+ D V +S
Sbjct 587 FAFQNLVGEHLTKAEIEELKEYAQSCGYKPGALLFGGVDDEK-LECIRDQTGAKVISTLS
645
Query 38835 KSFGFPTLEDGLSVLSKNDLADSLAYNSLKVRQMKFLYFSLSPKFFVC*NLMTHTYFFLQ
38656
KS GFP LE +S + + SL Y++ K
Sbjct 646 KSIGFPKLETDISRYRRQHVVGSLFYSNFK------------------------------
675
Query 38655 GLILSNALRAQKDAEDEGCTIALSNLRSEVIELRNEGLEKDKILYSLIDKIKEDEAAFKS
38476

Sbjct 676
725
++LS AL+ Q+D ED+ I + NL +++ E +++ EK E +AA
SMLLSKALQMQQDLEDKKHEIIIGNLENKIKE-QSDAFEKKNF---------ELQAAEGL
Query 38475 QAEAQKREIEDLRKQLARAKEERILEETKHELSDQWADHLEVTVEE-------LRSSKKR
38317
AEA+ + I +L +L R E+ E K +L+ + LE ++ L + +++
Sbjct 726 LAEAEAK-ISELNSKLLRQSEQ--FEREKQDLNAK----LEAEAQQNSDLRKLLTNLQEK
778
Query 38316 CYNKSIDCVKKLKASFAKVAYS 38251
C S C+++L+ F V S
Sbjct 779 CLEFSNKCIQRLRKIFYSVGAS 800
Score = 55.8 bits (133), Expect(2) = 8e-21, Method: Compositional matrix
adjust.
Identities = 32/90 (36%), Positives = 44/90 (49%), Gaps = 0/90 (0%)
Frame = -3
Query 38212 VIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSEAALSFEDTKD
38033
E I+ E + +E++ GD CA+ +RG A K GC+H KI+ + LS D
Sbjct 814 TFEHIEGEIDELDEVIAGHGDFCAWVASRGTAAAFMKAGCDHGKIVNRPNFTLSPSILDD
873
Query 38032 PSAEASIIGGKFFTDIWDNGGREMAGEIIR 37943
A I +F IW GGRE AG+ R
Sbjct 874 IPDLARSISNRFVKMIWTKGGREKAGDEAR 903
Score = 28.9 bits (63), Expect(2) = 5.2, Method: Compositional matrix
adjust.
Identities = 17/37 (46%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
Frame = -1
Query 6480 ENFVSIGDHTGAKVNGR*SMSIGSTKLASDSLIYRKS 6370
E I D TGAKV S SIG KL +D YR+
Sbjct 627 EKLECIRDQTGAKVISTLSKSIGFPKLETDISRYRRQ 663
Score = 25.0 bits (53), Expect(2) = 5.2, Method: Compositional matrix
adjust.
Identities = 14/58 (24%), Positives = 26/58 (45%), Gaps = 0/58 (0%)
Frame = -3

Query 6646 RKKRQMEEAASAREACTFNRDMETKSNNTELRCFRSLRDLND*TSGALVLGGLDERKF
6473
+K++++ + AS EA F + E+ + GAL+ GG+D+ K
Sbjct 572 KKRKEIADEASENEAFAFQNLVGEHLTKAEIEELKEYAQSCGYKPGALLFGGVDDEKL
629
>gb|AAP94598.1| putative transposase protein [Zea mays]
Length=757
Score = 286 bits (733), Expect = 1e-80, Method: Compositional matrix
adjust.
Identities = 158/378 (42%), Positives = 216/378 (57%), Gaps = 21/378 (6%)
Frame = +1
Query 7138 MSIHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEEEDYD---RMEEMLDDVRHEFVTV
7308
M HI KNG+ P Y W+ HGE R EV EDYD + +ML+D HE
Sbjct 1 MVEHIWKNGFTPDYTRWIFHGE--AHRTREEVVRQRVEDYDVDAGVGDMLNDY-HEAQFA
57
Query 7309 DSENPGQPTEFEDPATPEVQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNN
7488
+ TE E AT + F+++ AA++PLH TKV+ L + R+M KS+++ S +
Sbjct 58 EGR-----TEDEPEAT--AKAFYDMFDAAQKPLHGKTKVSQLDAIGRIMVFKSQYSMSRD
110
Query 7489 CYKELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKC
7668
+ LL VI +L E+H +PK MY+++KLL L M YE+I C C+LF KE K C
Sbjct 111 AFDGLLTVIGSLLLEDHVLPKSMYEAQKLLRALKMTYEQIHACPKGCVLFRKEHTKAKYC
170
Query 7669 TVCGERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVREN
7848
C RF+EV++ DG I LR++P IPR++RL++++ +A+ M WHK+G R N
Sbjct 171 PKCKSSRFMEVDSGDGQKRQLDIPVTILRHLPFIPRIQRLYMTEESAKQMTWHKKGKRYN
230
Query 7849 PNVMVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYN
8028
P+ MVH +D +AW DA A E RNVR LATDGF+P+ +TA Y+CWPVF +P N
Sbjct 231 PDKMVHASDGEAWTHFDAIHHEKAKEARNVRVALATDGFNPYGMTAAPYTCWPVFVIPIN
290
Query 8029 LPPALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILW-EGVEAYDCYKKQKFNL

8205
Sbjct 291
343
LPP +C + + IF+ LIIPG H G K+ V M PLI+EL W EGV C
LPPGVCFQRQNIFVSLIIPG--HLGNKMGVYMEPLIDELVRAWEEGVWTSPC-----MTF
Query 8206 RAAFLWSIHDFMAYGVRW 8259
R ++ F G RW
Sbjct 344 RRMGYFAPRVFTVVGQRW 361
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix
adjust.
Identities = 31/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +3
Query 23277 VSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLYG
23456
VS L R+M KS+++ S + L+ +I ++L +H +P+ MY ++KLL L M Y
Sbjct 89 VSQLDAIGRIMVFKSQYSMSRDAFDGLLTVIGSLLLEDHVLPKSMYEAQKLLRALKMTYE
148
Query 23457 KAHKLIEGD-LFKKESIYA-LLLKCFS 23531
+ H +G LF+KE A KC S
Sbjct 149 QIHACPKGCVLFRKEHTKAKYCPKCKS 175
>gb|AAL66752.1|AF464738_3 putative transposase [Zea mays]
Length=737
Score = 286 bits (731), Expect = 2e-80, Method: Compositional matrix
adjust.
Identities = 150/344 (44%), Positives = 206/344 (60%), Gaps = 15/344 (4%)
Frame = +1
Query 7138 MSIHICKNGYMPGYEVWVHHGEDPPPRIVSEVQSHEEEDYD---RMEEMLDDVRHEFVTV
7308
M HI KNG+ P Y W+ HGE R EV EDYD + +ML+D HE
Sbjct 1 MVEHIWKNGFTPDYTRWIFHGE--AHRTREEVVRQRVEDYDVDAGVGDMLNDY-HEAQFA
57
Query 7309 DSENPGQPTEFEDPATPEVQKFFELLKAAEEPLHEHTKVTVLVFVTRLMAIKSKFAFSNN
7488
+ TE E AT + F+++ AA++PLH TKV+ L + R+M KS+++ S +
Sbjct 58 EGR-----TEDEPEAT--AKAFYDMFDAAQKPLHGKTKVSQLDAIGRIMVFKSQYSMSRD
110

Query 7489 CYKELLNVISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCENNCMLFWKETAGEKKC
7668
+ LL VI +L E+H +PK MY+++KLL L M YE+I C C+LF KE K C
Sbjct 111 AFDGLLTVIGSLLLEDHVLPKSMYEAQKLLRALKMTYEQIHACPKGCVLFRKEHTKAKYC
170
Query 7669 TVCGERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVREN
7848
C RF+EV++ DG I LR++P IPR++RL++++ +A+ M WHK+G R N
Sbjct 171 PKCKSSRFMEVDSGDGQKRQLDIPVTILRHLPFIPRIQRLYMTEESAKQMTWHKKGKRYN
230
Query 7849 PNVMVHPADTDAWKALDAFDSSFADEVRNVRFGLATDGFSPFNVTATSYSCWPVFAVPYN
8028
P+ MVH +D +AW DA A E RNVR LATDGF+P+ +TA Y+CWPVF +P N
Sbjct 231 PDKMVHASDGEAWTHFDAIHHEKAKEARNVRVALATDGFNPYGMTAAPYTCWPVFVIPIN
290
Query 8029 LPPALCMKYEFIFLCLIIPGPDHPGTKIDVMMRPLIEELKILWE 8160
LPP +C + + IF+ LIIPG H G K+ V M PLI+EL WE
Sbjct 291 LPPGVCFQRQNIFVSLIIPG--HLGNKMGVYMEPLIDELVRAWE 332
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix
adjust.
Identities = 31/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +3
Query 23277 VSTLAFTTRLMAIkskfafssk*YKELMDLIIDVILPNHKIPRDMYHSKKLLIGLGMLYG
23456
VS L R+M KS+++ S + L+ +I ++L +H +P+ MY ++KLL L M Y
Sbjct 89 VSQLDAIGRIMVFKSQYSMSRDAFDGLLTVIGSLLLEDHVLPKSMYEAQKLLRALKMTYE
148
Query 23457 KAHKLIEGD-LFKKESIYA-LLLKCFS 23531
+ H +G LF+KE A KC S
Sbjct 149 QIHACPKGCVLFRKEHTKAKYCPKCKS 175
>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
Length=1406
Score = 293 bits (749), Expect = 5e-80, Method: Compositional matrix
adjust.
Identities = 171/505 (34%), Positives = 279/505 (55%), Gaps = 16/505 (3%)
Frame = -2

Query 82157 WVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVRNKARLVAQGYTQ
81978
W++AM EL + N+VW+L P +G KWV++ K + G + R KARLVA+G+TQ
Sbjct 900 WLSAMEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDSRGNIERYKARLVAKGFTQ
959
Query 81977 IEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFE
81798
EG+D+ ETF+PV+ ++ RI++A +++L+QM VK+AFLNG++ E V++ QP GF
Sbjct 960 REGIDYHETFSPVSTKDSFRIIMALVAHFDLELHQMGVKTAFLNGELEENVFMAQPKGFV
1019
Query 81797 DPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTK-RIGKDLFVC
81621
+ + L +++YGLKQA R WY + + F+ K D ++ K R GK +F+
Sbjct 1020 VSGKEHMGCHLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKEDNCIYAKFRKGKYIFLV
1079
Query 81620 QIYVDDIIFGSTN-DLFCEEFGKMMSKEFEMSMIGELSFFLGLQI-KQLKDGIF-ISQSK
81450
+YVDDI+ S++ DL E G +S F+M +GE S+ LG++I + + G+ +SQ
Sbjct 1080 -LYVDDILLASSDKDLLAETKG-FLSSNFDMKDMGEASYVLGIEIHRDRQKGVLGLSQKS
1137
Query 81449 YLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQK------LYRSIIGSLLYI-TA
81291
Y++++LK++ + P+ + +K Y S IGS++Y
Sbjct 1138 YIENVLKRYNMHKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVC
1197
Query 81290 SRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDY
81111
+RPD+ F+ M R+Q +P H KA K+ LRYL+ T + L Y + +++GY+D+D+
Sbjct 1198 TRPDLAFTTGMLGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADW
1257
Query 81110 AGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLD
80931
GC+ KSTSG L +SW S KQ + A ST AE+++ Q +W+K+ +
Sbjct 1258 GGCRDTLKSTSGYVFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPG
1317
Query 80930 YEI---IFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDHVGKGDISIYSIGTD
80760
+ I + + + CDNE AV + N K+IDI+ + +++ + I + I T

Sbjct 1318
1377
LRVVDSIERPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTH
Query 80759 DQLADIFTKPLDETRFCSLRSEMNV 80685
LAD TK L + F + M +
Sbjct 1378 QMLADPLTKGLPPSVFSKHAAGMGL 1402
Score = 145 bits (367), Expect(2) = 1e-40, Method: Compositional matrix
adjust.
Identities = 112/415 (27%), Positives = 191/415 (46%), Gaps = 18/415 (4%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVEKYPTFENDRYPNHVY
141786
FSPV+ +SF I++A H+ +L QM VK AFLNG ++E V++ + F +
Sbjct 969 FSPVSTKDSFRIIMALVAHFDLELHQMGVKTAFLNGELEENVFMAQPKGFVVSGKEHMGC
1028
Query 141787 KLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVDDIIFG
141966
L +++Y LK+A WY + F+ K+ ++ K G + VDDI+
Sbjct 1029 HLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKEDNCIYAKFRKGKYIFLVLYVDDILLA
1088
Query 141967 STNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFI--SQTKYTQDILKMFEI
142140
S+++ E + ++M MGE +Y L ++ + + + SQ Y +++LK + +
Sbjct 1089 SSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIHRDRQKGVLGLSQKSYIENVLKRYNM
1148
Query 142141 K--DAKPIKTLMGTN-GHLDLDIGG------KSVDQKI*RSMIGSLLYLYV-SRLHIILS
142290
+A P + G G KSV S IGS++Y V +R + +
Sbjct 1149 HKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYA---SAIGSIMYAQVCTRPDLAFT
1205
Query 142291 VCMCARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRK
142470
M R+Q + H + VK+ LRYL T L Y + ++ +VGY D D+ + K
Sbjct 1206 TGMLGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGCRDTLK
1265
Query 142471 STSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQ---TLRDFG*NL
142641
STS L +SW S +Q A ST A+++ Q + +++ LR

Sbjct 1266
1325
STSGYVFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIE
Query 142642 SKVPLLCDNKSAIRLVDNPIEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQL
142806
+ + CDN+ A+ N K+IDI+ + +++ I++ H+ TH L
Sbjct 1326 RPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTHQML
1380
Score = 46.2 bits (108), Expect(2) = 1e-40, Method: Composition-based
stats.
Identities = 21/41 (51%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Frame = +2
Query 141488 VGTKCVFHNKKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
VG K V+ K+D G + R K RLVAKG+ Q G+D+ ETF
Sbjct 929 VGCKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHETF 969
Score = 47.8 bits (112), Expect(3) = 1e-17, Method: Composition-based
stats.
Identities = 22/46 (48%), Positives = 30/46 (65%), Gaps = 0/46 (0%)
Frame = +1
Query 53161 SDFITFIDDSTRFCYVYLLKSKDEALHYFKTY*VEAENQLKRKIKL 53298
+ FITF DD +R+ Y+Y +K + EAL FK + E ENQ KIK+
Sbjct 523 NSFITFTDDYSRYGYIYPIKERSEALDKFKQFKAEVENQHDLKIKI 568
Score = 47.8 bits (112), Expect(3) = 1e-17, Method: Compositional matrix
adjust.
Identities = 33/105 (31%), Positives = 47/105 (45%), Gaps = 6/105 (6%)
Frame = +2
Query 53411 GMVGEAILNVCHVLNKVPIKDKKITPFKDWEKKKLNISYLCT*VCLVIVNVPINKKRKLG
53590
G+ EA+ H+LN+VP K TP++ W +K ++Y C + + KL
Sbjct 639 GLWMEALKTAMHILNRVPSKSVARTPYELWIGRKPTLNYFHIWGCPAEARIFNPGQGKLD
698
Query 53591 PKTVDCVFLRYAFYIVGYRFLIINSRVPDMLVGTIIESRCYIF*E 53725
+T C F+ Y GYRF PD IE+R IF E
Sbjct 699 ERTTSCHFIGYPDRSKGYRFY-----CPDRQT-KFIETRHAIFLE 737

Score = 39.3 bits (90), Expect(3) = 1e-17, Method: Composition-based
stats.
Identities = 19/46 (41%), Positives = 26/46 (57%), Gaps = 0/46 (0%)
Frame = +3
Query 53286 EN*TIHERTVSYSLQSNGVAETKNRTLTDLVNAMLETSGLSKAWWV 53423
EN + + + Q NGVAE +NRTL D+V +ML S L W+
Sbjct 597 ENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSNLPLGLWM 642
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix
adjust.
Identities = 48/209 (23%), Positives = 88/209 (42%), Gaps = 35/209 (17%)
Frame = +2
Query 129173 CQGC--QFYARQTHLPAQ----ALQTI--PITWPFAVWGLDLVSPLQKAPGGYTHLLVAI
129328
C+GC +A+Q A+ L+ I I PF V +D G+ +
Sbjct 480 CRGCIKGKFAKQIKKDAKHSTRVLEIIHTDICGPFPVRTVD----------GFNSFITFT
529
Query 129329 DKFSKWIEVRPLNSIRSE---QAVAFFTNIIHRFGVPNSII-TNNGTQFTGRK-------
129475
D +S++ + P+ RSE + F + ++ + I+ ++ G ++ GR
Sbjct 530 DDYSRYGYIYPIKE-RSEALDKFKQFKAEVENQHDLKIKIVRSDRGGEYYGRHTEYGQVP
588
Query 129476 --FLDFCEDHHIRVDWAIVAHPMTNGQVERANGMILQGLKPRI-YNDLNKFGKRWMKELP
129646
F F ++ I ++ P NG ER N ++ ++ + Y++L G WM+ L
Sbjct 589 GPFARFLRENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSNL-PLG-LWMEALK
646
Query 129647 LVVWSLRTTPSRATGFTPFFLVYGAEAIL 129733
+ L PS++ TP+ L G + L
Sbjct 647 TAMHILNRVPSKSVARTPYELWIGRKPTL 675
>gb|ACL52900.1| unknown [Zea mays]
Length=155
Score = 256 bits (653), Expect = 6e-77, Method: Compositional matrix
adjust.
Identities = 116/155 (75%), Positives = 135/155 (87%), Gaps = 0/155 (0%)
Frame = -2

Query 81419 LENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYITASRPDVMFSVCMCARFQA
81240
+++ KPIKT M TNGHLDLD GG VDQK+YRS+IGSLLY+ ASRPD+M SVCMCARFQA
Sbjct 1 MKDDKPIKTLMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQA
60
Query 81239 SPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFL
81060
P+E HL KR LRYL +TP GLWYP+G+ F+LIGYSD+D+AGCK++RK TSG CQFL
Sbjct 61 DPKEAHLTVVKRTLRYLVHTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKRTSGTCQFL
120
Query 81059 GRSLVSWSSKKQNSVALSTAEAEYISAGNCCAQLL 80955
GRSLVSW+SKKQNSVALSTAEAEYI+AG+CCAQLL
Sbjct 121 GRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLL 155
Score = 225 bits (574), Expect = 2e-66, Method: Compositional matrix
adjust.
Identities = 111/155 (72%), Positives = 125/155 (81%), Gaps = 0/155 (0%)
Frame = +1
Query 142138 IKDAKPIKTLMGTNGHLDLDIGGKSVDQKI*RSMIGSLLYLYVSRLHIILSVCMCARFQS
142317
+KD KPIKTLMGTNGHLDLD GGKSVDQK+ RSMIGSLLYL SR I+LSVCMCARFQ+
Sbjct 1 MKDDKPIKTLMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQA
60
Query 142318 DAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLDRKSTSETCLFL
142497
D KE HL VVK+ LRYLV T F LWYP+GSTFDL+GY D D+ K++RK TS TC FL
Sbjct 61 DPKEAHLTVVKRTLRYLVHTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKRTSGTCQFL
120
Query 142498 GRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL 142602
GRSLVSW+SK+QN VALST +A+YI A H QLL
Sbjct 121 GRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLL 155
>gb|ACF84101.1| unknown [Zea mays]
Length=169
Score = 246 bits (629), Expect = 1e-73, Method: Compositional matrix
adjust.
Identities = 118/145 (81%), Positives = 129/145 (89%), Gaps = 0/145 (0%)
Frame = -1

Query 61095 TTASRAARETPFSLVYGAEACLPPEILMGSPRVQLFDESMQEQLQHEDMDFIDEHRWQAA
60916
TT SRA E PF LVYGAEACLPPEI+MGSPRVQ FDESMQEQL+ ED+DFIDEHRW+A
Sbjct 25 TTPSRATGEIPFFLVYGAEACLPPEIIMGSPRVQSFDESMQEQLRREDVDFIDEHRWRAT
84
Query 60915 IRNARYSQALKRYHQRFVHSRELGVGDLVLRQVLNREWLHKLSPSWEGPFKVTEVCRPGC
60736
IRNA+Y+QAL+RYHQRFVHSREL VGDLVLR+VLNRE LHKLSP+WEGPF VT +CRP C
Sbjct 85 IRNAQYNQALRRYHQRFVHSRELRVGDLVLRRVLNREGLHKLSPNWEGPFNVTGICRPRC
144
Query 60735 VRLATTKGVPLPNL*NIEHLHKFYP 60661
VRLATT+GV LPN NIEHLHKFYP
Sbjct 145 VRLATTEGVSLPNPWNIEHLHKFYP 169
Score = 140 bits (354), Expect = 5e-37, Method: Compositional matrix
adjust.
Identities = 70/148 (47%), Positives = 97/148 (66%), Gaps = 0/148 (0%)
Frame = +2
Query 129659 SLRTTPSRATGFTPFFLVYGAEAILPTDLEYGFPRTRAYDDQSNRANREDSLDQLEEARD
129838
+ RTTPSRATG PFFLVYGAEA LP ++ G PR +++D+ R + +D ++E R
Sbjct 22 ATRTTPSRATGEIPFFLVYGAEACLPPEIIMGSPRVQSFDESMQEQLRREDVDFIDEHRW
81
Query 129839 MALLHSVRYQQSLRRYHARGVRSRDLQVGDLVLRLRQDAQGRHKLTPPLEGPFVIAKVLK
130018
A + + +Y Q+LRRYH R V SR+L+VGDLVLR + +G HKL+P EGPF + + +
Sbjct 82 RATIRNAQYNQALRRYHQRFVHSRELRVGDLVLRRVLNREGLHKLSPNWEGPFNVTGICR
141
Query 130019 PGTYKLANSQGEVYSNAWNIR*LRRFYP 130102
P +LA ++G N WNI L +FYP
Sbjct 142 PRCVRLATTEGVSLPNPWNIEHLHKFYP 169
Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix
adjust.
Identities = 59/147 (40%), Positives = 71/147 (48%), Gaps = 4/147 (3%)
Frame = +1
Query 149473 ALNTTECRATGFTPFCLLHGSESMTPQEIKHGSPRTNTSATPDVDEPTSK---DLIDGDR

149643
Sbjct 22
80
A TT RATG PF L++G+E+ P EI GSPR S + E + D ID R
ATRTTPSRATGEIPFFLVYGAEACLPPEIIMGSPRVQ-SFDESMQEQLRREDVDFIDEHR
Query 149644 VFALQALNKYQAQTKA*HDNAVVPREFNTGDLVLVRTTRTESRGKLEPKWEGPFIVKSKA
149823
A +Y + H V RE GDLVL R E KL P WEGPF V
Sbjct 81 WRATIRNAQYNQALRRYHQRFVHSRELRVGDLVLRRVLNREGLHKLSPNWEGPFNVTGIC
140
Query 149824 SPSAYRLSTPTGEDLDHSWNIDNLRKF 149904
P RL+T G L + WNI++L KF
Sbjct 141 RPRCVRLATTEGVSLPNPWNIEHLHKF 167
>gb|ACF81125.2| unknown [Zea mays]
Length=516
Score = 256 bits (653), Expect = 2e-72, Method: Compositional matrix
adjust.
Identities = 132/142 (93%), Positives = 138/142 (97%), Gaps = 0/142 (0%)
Frame = +2
Query 111125 QTEETKNADKNGPigiisaigisiLVGWGYILGITFAVKDIPYLLSPDNDAGGYAIAEVF
111304
TEETKNADKNGPIGIISAIGISILVGWGYILG+TFAVKDIPYLLSPDNDAGGYAIAEVF
Sbjct 362 MTEETKNADKNGPIGIISAIGISILVGWGYILGVTFAVKDIPYLLSPDNDAGGYAIAEVF
421
Query 111305 YLAFKSRYGSGVGGIVCLGIVAVAIYLCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNR
111484
YLAFKSRYGSG GGIVCLG+VAVA+Y CGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVN+
Sbjct 422 YLAFKSRYGSGAGGIVCLGVVAVAVYFCGMSSVTSNSRMAYAFSRDGAMPFSSVWHKVNK
481
Query 111485 QDVPINAVWLSAFIALCMALPV 111550
Q+VPINAVWLSA +ALCMALPV
Sbjct 482 QEVPINAVWLSALVALCMALPV 503
Score = 214 bits (544), Expect = 3e-58, Method: Compositional matrix
adjust.
Identities = 126/168 (75%), Positives = 135/168 (80%), Gaps = 23/168 (14%)
Frame = +3

Query 110559 QWAVTTSVDYSlaqliqviillaTGGKTGGGYVASKYMVLGFHAAILLSHAVINSLPISC
110738
QWAVTTSVDYSLAQLIQVIILLATGGK GGGY+ASKYMV+GFHAAILLSHAVINSLPI+
Sbjct 228 QWAVTTSVDYSLAQLIQVIILLATGGKNGGGYLASKYMVIGFHAAILLSHAVINSLPITF
287
Query 110739 LSFLGQFAAAWNVLGSLPPILDLSACTGIILLLVAAGVFVLMIAVPTVATERASAEFVFT
110918
LSF GQFAAAWN+L
GVFVLM+AVPTVATERASAEFVFT
Sbjct 288 LSFFGQFAAAWNML----------------------GVFVLMVAVPTVATERASAEFVFT
325
Query 110919 HFNTDNDGAGIRSSLYIFVLGLLMSQYTFTGYDASAHMVRTYLNLEQH 111062
HFNTDN GAGIRS+LYIFVLGLLMSQYT TGYDASAHM N +++
Sbjct 326 HFNTDN-GAGIRSNLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKN 372
Score = 182 bits (462), Expect = 1e-47, Method: Compositional matrix
adjust.
Identities = 94/121 (78%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Frame = +1
Query 107629 VLSNFAFSFSIISVLTGVTTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
107808
VLSNFAFSFSIISVLTG+TTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
Sbjct 136 VLSNFAFSFSIISVLTGITTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
195
Query 107809 TSGGLYYWSARLSGKRWAPFASWITGWYGKIVIRWA--HYVEKTLVQHCCKTVCLQSLKK
107982
TSGGLYYWSARLSGKRWAPFASWITGW+ +V +WA V+ +L Q + L + K
Sbjct 196 TSGGLYYWSARLSGKRWAPFASWITGWF-NVVGQWAVTTSVDYSLAQLIQVIILLATGGK
254
Query 107983 K 107985
Sbjct 255 N 255
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix
adjust.
Identities = 62/88 (70%), Positives = 78/88 (89%), Gaps = 1/88 (1%)
Frame = +1
Query 107629 VLSNFAFSFSIISVLTGVTTLYNTGLNFGGPATMTFGWFVAGAFTMAVGASMAEICSSFP
107808

Sbjct 48
107
V++NF+ SFSI+SV+TGVTTL+ TGL FGGPATM +GW +AGAFT AVG +MAEICS++P
VVANFSVSFSIVSVVTGVTTLFGTGLQFGGPATMVYGWPIAGAFTAAVGLAMAEICSAYP
Query 107809 TSGGLYYWSARL-SGKRWAPFASWITGW 107889
TSGGLY+WSARL + +RW PFA+W+TGW
Sbjct 108 TSGGLYFWSARLCTHRRWGPFAAWLTGW 135
>gb|ABF67931.1| Elote1 putative polyprotein [Zea mays]
Length=1185
Score = 266 bits (681), Expect = 2e-72, Method: Compositional matrix
adjust.
Identities = 174/523 (33%), Positives = 268/523 (51%), Gaps = 30/523 (6%)
Frame = -2
Query 82196 EPNRVDEALLDVDWVN---AMHKELNNFARNEVW-ELVERPKNHNVIGTKWVFRNKHNK-
82032
EP + E DWV A+ EL + ++ +V+ + P + R K K
Sbjct 642 EPKSMAECQKRSDWVKWKEAIETELLSLSKRQVFGPVAHTPPQCYPSRVQMGVRPKEGKR
701
Query 82031 --DGVVVRNKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKS
81858
+ VVR KARLVAQG+TQ +D+ ET++PV R L++ A N+K+ MDV +
Sbjct 702 DANNEVVRYKARLVAQGFTQRPDIDYDETYSPVMSGTTFRYLISLAAGLNLKMQMMDVVT
761
Query 81857 AFLNGKISELVYVEQPPGFEDP----KRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSK
81690
A+L G + +Y++ P G P R + KL +ALYGLKQ+ R WY RL +FLL K
Sbjct 762 AYLYGSLDSEIYMKVPDGLRVPDAKSNRNMYSVKLQRALYGLKQSGRMWYNRLSEFLLKK
821
Query 81689 DFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIF-GSTNDLFCEEFGKMMSKEFEMSMIGEL
81513
+ +F ++ K + +Y+DD+ F G D+ EE + EFEM +GE
Sbjct 822 GYVNNPDSPCVFIRKSQKGFCIVSVYIDDLNFIGYAEDI--EEASAYLKTEFEMKDLGET
879
Query 81512 SFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNG-HLDLD-------E
81357
F LGLQI+ L +GIF+ QS Y K +L++F + A P+KTPM +D D +
Sbjct 880 KFCLGLQIEHLPEGIFVHQSTYCKKVLERFNMIKAHPLKTPMVVRSLEMDTDPFRPKSDD
939

Query 81356 GGTIVDQKLYRSIIGSLLYIT-ASRPDVMFSVCMCARFQASPREIHLKAAKRILRYLKYT
81180
++ + Y S IG+L+Y+ +RPD+ F+V + AR+ A H K ILRYLK T
Sbjct 940 EKSLGPEVPYLSAIGALMYLANCTRPDIAFAVNLLARYSADLTRRHWVGVKTILRYLKGT
999
Query 81179 PNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVSWSSKKQNSVALSTA
81000
++GL++PK ++GY+D+ Y + S +G G ++VSW S KQ V ST
Sbjct 1000 QDLGLFFPKNQDQTMVGYADAGYQSDPHNGISQTGFVFLCGGTVVSWRSCKQTLVTTSTN
1059
Query 80999 EAEYISAGNCCAQLLWMK------QTLLDYEIIFKNVPLMCDNESAV-KLATNPVQHSRT
80841
+E IS + W++ Q Y + DN + V ++ T ++ + T
Sbjct 1060 HSEIISLYEAARECAWLRRMTNYIQKSCGYNTANTPTIIYEDNVACVAQMETCYIKSNMT
1119
Query 80840 KHIDIRHHFLRDHVGKGDISIYSIGTDDQLADIFTKPLDETRF 80712
KHI ++ + + +G++ I + + D LAD+FTK L F
Sbjct 1120 KHICPKYFYPHELQNEGEVKILQVNSCDNLADLFTKSLLAVAF 1162
Score = 142 bits (359), Expect(2) = 2e-36, Method: Compositional matrix
adjust.
Identities = 119/429 (28%), Positives = 204/429 (48%), Gaps = 24/429 (6%)
Frame = +1
Query 141607 FSPVARLESFHILLAYATHYSFKLFQMDVKNAFLNGPIKEEVYVE-----KYPTFENDRY
141771
+SPV +F L++ A + K+ MDV A+L G + E+Y++ + P +++R
Sbjct 731 YSPVMSGTTFRYLISLAAGLNLKMQMMDVVTAYLYGSLDSEIYMKVPDGLRVPDAKSNRN
790
Query 141772 PNHVYKLSKALYVLKKAPSTWYECLKDFLISNSFKVRKDGATLFTKTCDGDLFVCQICVD
141951
V KL +ALY LK++ WY L +FL+ + D +F + + + +D
Sbjct 791 MYSV-KLQRALYGLKQSGRMWYNRLSEFLLKKGYVNNPDSPCVFIRKSQKGFCIVSVYID
849
Query 141952 DIIFGSTNQKSCEEFSRLMVQKYEMSMMGELNYFLIFQVKQLKDDTFISQTKYTQDILKM
142131
D+ F + EE S + ++EM +GE + L Q++ L + F+ Q+ Y + +L+
Sbjct 850 DLNFIGYAE-DIEEASAYLKTEFEMKDLGETKFCLGLQIEHLPEGIFVHQSTYCKKVLER
908

Query 142132 FEIKDAKPIKTLMGTNG-HLDLD-IGGKSVDQKI*R------SMIGSLLYLY-VSRLHII
142284
F + A P+KT M +D D KS D+K S IG+L+YL +R I
Sbjct 909 FNMIKAHPLKTPMVVRSLEMDTDPFRPKSDDEKSLGPEVPYLSAIGALMYLANCTRPDIA
968
Query 142285 LSVCMCARFQSDAKECHLRVVKQILRYLVDTHHFRLWYPKGSTFDLVGYFDIDYVEWKLD
142464
+V + AR+ +D H VK ILRYL T L++PK +VGY D Y +
Sbjct 969 FAVNLLARYSADLTRRHWVGVKTILRYLKGTQDLGLFFPKNQDQTMVGYADAGYQSDPHN
1028
Query 142465 RKSTSETCLFLGRSLVSWSSKRQNFVALSTTKAKYIIACH*YVQLL*MRQTL----RDFG
142632
S + G ++VSW S +Q V ST ++ I + +R+ + G
Sbjct 1029 GISQTGFVFLCGGTVVSWRSCKQTLVTTSTNHSEIISLYEAARECAWLRRMTNYIQKSCG
1088
Query 142633 *NLSKVPLLC--DNKSAIRLVDNP-IEHSRTKHIDIQHHFLRDHQQRRDIEINHVSTHHQ
142803
N + P + DN + + ++ I+ + TKHI ++ + + Q +++I V++
Sbjct 1089 YNTANTPTIIYEDNVACVAQMETCYIKSNMTKHICPKYFYPHELQNEGEVKILQVNSCDN
1148
Query 142804 L-DIFSPCL 142827
L D+F+ L
Sbjct 1149 LADLFTKSL 1157
Score = 35.0 bits (79), Expect(2) = 2e-36, Method: Compositional matrix
adjust.
Identities = 15/32 (47%), Positives = 21/32 (66%), Gaps = 0/32 (0%)
Frame = +2
Query 141515 KKDEYGVVTRNKGRLVAKGYAQVIGLDFDETF 141610
K+D V R K RLVA+G+ Q +D+DET+
Sbjct 700 KRDANNEVVRYKARLVAQGFTQRPDIDYDETY 731
Score = 89.0 bits (219), Expect(3) = 1e-26, Method: Compositional matrix
adjust.
Identities = 65/182 (36%), Positives = 92/182 (51%), Gaps = 17/182 (9%)
Frame = -3
Query 18616 YSITPAK*YWLGWLRDIF**LKGISDLNIFYKRS*GSTFTGYILVSFTKEIEILTFL*PQ

18437
Sbjct 977
1027
YS + +W+G ++ I LKG DL +F+ ++ T GY + + P
YSADLTRRHWVG-VKTILRYLKGTQDLGLFFPKNQDQTMVGYADAGYQSD--------PH
Query 18436 ES*MEDKFCILDVWNGPI---RDVYDKMSMVISTNHSDK*SC*LYGISQT*LGLHRMINH
18266
+ F L G + R + + STNHS+ S LY ++ L RM N+
Sbjct 1028 NGISQTGFVFL--CGGTVVSWRSCKQTL-VTTSTNHSEIIS--LYEAARECAWLRRMTNY
1082
Query 18265 ILQSFEIGSIESSTIIYEDNDACVV*MVTSYIKSNITKHISPKLFYLHELQNN*EINICK
18086
I +S + + TIIYEDN ACV M T YIKSN+TKHI PK FY HELQN E+ I +
Sbjct 1083 IQKSCGYNTANTPTIIYEDNVACVAQMETCYIKSNMTKHICPKYFYPHELQNEGEVKILQ
1142
Query 18085 LS 18080
++
Sbjct 1143 VN 1144
Score = 50.4 bits (119), Expect(3) = 1e-26, Method: Compositional matrix
adjust.
Identities = 24/39 (62%), Positives = 26/39 (67%), Gaps = 0/39 (0%)
Frame = -2
Query 18098 KYLQTKSCDNLVDLFTKSLSYSTFSKYVEGIKMKQVRDL 17982
K LQ SCDNL DLFTKSL F K V GI M+ +RDL
Sbjct 1139 KILQVNSCDNLADLFTKSLLAVAFRKCVRGIGMRHLRDL 1177
Score = 26.6 bits (57), Expect(3) = 1e-26, Method: Compositional matrix
adjust.
Identities = 11/17 (65%), Positives = 13/17 (76%), Gaps = 0/17 (0%)
Frame = -1
Query 18708 YINAFGTLTYLANRTRP 18658
Y++A G L YLAN TRP
Sbjct 949 YLSAIGALMYLANCTRP 965
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix
adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +2

Query 129272 LVSPLQKAPGGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIH-RFGVPN----S
129436
L++PL G + + +V ID +KW V L S R+ F II R P S
Sbjct 220 LINPLS---GPFRYFMVLIDASTKWSHV-CLLSTRNHAFAKFIAQIIRLRASFPENRIQS
275
Query 129437 IITNNGTQFTGRKFLDFCEDHHIRVDWAIVAHPMTNGQVE 129556
I +N +FT + F D+C I V+ ++ NG E
Sbjct 276 IGMDNAGEFTSKAFNDYCLALGINVEHSVPHVHTQNGLAE 315
>ref|NP_001150719.1| seven-transmembrane-domain protein 1 [Zea mays]
gb|ACG40116.1| seven-transmembrane-domain protein 1 [Zea mays]
gb|ACN35771.1| unknown [Zea mays]
Length=243
Score = 154 bits (389), Expect(4) = 6e-69, Method: Compositional matrix
adjust.
Identities = 73/75 (97%), Positives = 73/75 (97%), Gaps = 0/75 (0%)
Frame = +3
Query 48435 LTFWRICKARDVEEFKPDPYLATLLNCMLWVFYGIPVVHPNSILVVTINGVGLVIEAIYL
48614
LTFWRICKARDVEEFKPDPYLATLLNCMLWVFYGIPVVHPNSILVVTINGVGLVIEAIYL
Sbjct 28 LTFWRICKARDVEEFKPDPYLATLLNCMLWVFYGIPVVHPNSILVVTINGVGLVIEAIYL
87
Query 48615 TIFFLYSDGPKRVSA 48659
TIFFLYSDGPKR A
Sbjct 88 TIFFLYSDGPKRRKA 102
Score = 110 bits (274), Expect(4) = 6e-69, Method: Compositional matrix
adjust.
Identities = 55/61 (90%), Positives = 57/61 (93%), Gaps = 0/61 (0%)
Frame = +2
Query 48743 NSRSQRKAFGILAVEILFMVAVVLGVILGAHTHEKRSMIVGILCVIFGSMMYASPLTIMV
48922
+ +RKAFGILAVEILFMVAVVLGVILGAHTHEKRSMIVGILCVIFGSMMYASPLTIM
Sbjct 95 DGPKRRKAFGILAVEILFMVAVVLGVILGAHTHEKRSMIVGILCVIFGSMMYASPLTIMS
154
Query 48923 R 48925
R

Sbjct 155 R 155
Score = 35.0 bits (79), Expect(4) = 6e-69, Method: Compositional matrix
adjust.
Identities = 15/19 (79%), Positives = 17/19 (89%), Gaps = 0/19 (0%)
Frame = +3
Query 48105 MISPDAARNVVGIIGTLVQ 48161
MISPDAARNVVGIIG ++
Sbjct 1 MISPDAARNVVGIIGNVIS 19
Score = 28.9 bits (63), Expect(4) = 6e-69, Method: Compositional matrix
adjust.
Identities = 13/15 (87%), Positives = 14/15 (93%), Gaps = 0/15 (0%)
Frame = +1
Query 48277 VAGNVISFGLFLSPV 48321
+ GNVISFGLFLSPV
Sbjct 13 IIGNVISFGLFLSPV 27
Score = 174 bits (442), Expect = 9e-48, Method: Compositional matrix
adjust.
Identities = 101/177 (57%), Positives = 109/177 (62%), Gaps = 42/177 (24%)
Frame = +2
Query 50042 NILFLQSVALSVSHSDSKHSENVSILGWI*AIWADVNL*SFFFFLVQSRVIKTKSVEYMP
50221
ILF+ +V L V H + I+G + I+ + S + SRVIKTKSVEYMP
Sbjct 109 EILFMVAVVLGVILGAHTHEKRSMIVGILCVIFGSMMYASPL--TIMSRVIKTKSVEYMP
166
Query 50222 FLLSLVSFLNGCCWTAYALIRFDLYVTVSIDRL*ICMRLFSTCNKSVTEFHL*VE*NLSY
50401
FLLSLVSFLNGCCWTAYALIRFDLYVT
Sbjct 167 FLLSLVSFLNGCCWTAYALIRFDLYVT---------------------------------
193
Query 50402 **IPAMQIPNALGAFFGLIQLILYFCYYKSTPKEKNVELPTVSSNAGGGNVTVSVER
50572
IPNALGAFFGLIQLILYFCYYKSTPKEKNVELPTVSSNAGGGNVTVSVER
Sbjct 194 -------IPNALGAFFGLIQLILYFCYYKSTPKEKNVELPTVSSNAGGGNVTVSVER
243

gb|AAA33448.1| reverse transcriptase, partial [Zea mays]
Length=700
Score = 241 bits (614), Expect = 9e-66, Method: Compositional matrix
adjust.
Identities = 124/307 (40%), Positives = 179/307 (58%), Gaps = 2/307 (1%)
Frame = -2
Query 82193 PNRVDEALLDVDWVNAMHKELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNKDGVVVR
82014
P+ V AL D W AM +E N W+LV P NV+ KW+FR+K DG + R
Sbjct 395 PSSVRTALADPHWCRAMEEEYATLLVNHTWDLVPCPPGTNVVIGKWLFRHKLTSDGSLDR
454
Query 82013 NKARLVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKIS
81834
KAR V +G+TQ G+D+ ETF+PV + + +L+ A + N ++Q+DVK+AFL+G ++
Sbjct 455 YKARWVLRGFTQRPGVDYDETFSPVIKFATVCAVLSIALSRNWAIHQLDVKNAFLHGTLT
514
Query 81833 ELVYVEQPPGFEDPKRPNHVFKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLF
81654
E VY QP GF D RP+ V +L+++LY LKQAPRAWY R +L S F K DT+LF
Sbjct 515 ETVYYSQPTGFVDADRPDLVCRLNRSLYDLKQAPRAWYTRFTSYLASIGFVEAKSDTSLF
574
Query 81653 TKRIGKDLFVCQIYVDDIIF-GSTNDLFCEEFGKMMSKEFEMSMIGELSFFLGLQIKQLK
81477
R G D +YVDDI+ ST DL + + +EF M + L FLG+ ++
Sbjct 575 IYRRGDDTVYLLLYVDDIVLTASTADLL-QRTIVALQREFAMKDLWPLHHFLGITAERRP
633
Query 81476 DGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTIVDQKLYRSIIGSLLYI
81297
G+F+ Q +Y D+L++ G+ + KP T + T L D+ + D YRS+ G+L Y+
Sbjct 634 QGLFLHQRQYAIDILERAGMSDCKPCSTHVDTQAKLSEDDRPPVADTTSYRSLTGTLQYL
693
Query 81296 TASRPDV 81276
T SR D+
Sbjct 694 TFSRLDL 700
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR
+PRF

excluding environmental samples from WGS projects
Posted date: Sep 29, 2012 2:13 PM
Number of letters in database: 12,507,913
Number of sequences in database: 44,391
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44391
Number of Hits to DB: 0
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 150000
Length of database: 12507913
Length adjustment: 135
Effective length of query: 149865
Effective length of database: 6515128
Effective search space: 324876857720
Effective search space used: 324876857720
T: 12
A: 40
X1: 0 (0.0 bits)
X2: 0 (0.0 bits)
X3: 0 (0.0 bits)
S1: 0 (4.6 bits)
S2: 79 (35.0 bits)
ka-blk-alpha gapped: 1.9
ka-blk-alpha ungapped: 0.7916
ka-blk-alpha_v gapped: 42.6028
ka-blk-alpha_v ungapped: 4.96466
ka-blk-sigma gapped: 43.6362