Text S1: Protein sequences and alignments of all proteins found in ...

(B)
GAPC2 -----------------------------------------------------------M 1
GAPA2 MASATFSVAKPSLQGFSEFSGLRNSSALPFAKRSSSDEFVSFVSFQTSAMRSNGGYRKGV 60
:
GAPC2 ADKKIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWK 59
GAPA2 TEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGG-VKQASHLLKYDSTLGIFD 119
:: **::.********* . * *.* :::*.:**. .: ::::****. * :.
GAPC2 HHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGG 119
GAPA2 -ADVKPSGDSALSVDGKIIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHLQAG 178
::* ..*.:* .. * :.:.. ***.::**** * *:*:*.****.*:* *. **:.*
GAPC2 AKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGL 178
GAPA2 AKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGT 238
****:*:**.* * * :***** . *. : *:************:.**::::***::*
GAPC2 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 238
GAPA2 MTTTHSYTGDQRLLD-ASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALR 297
***.** *. *: :* .* :* * .***::**:*:********. ***.*:***.*:::*
GAPC2 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSI 298
GAPA2 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSST 357
*** :******.*::.* : :*:: *::: :* ::****. :: :**.** .: **
GAPC2 FDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSKA-- 338
GAPA2 IDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 399
:*:. :.:.*.:**:::*********.***** :::
(C)
>AT1G03860
MSFNKVPNIPGAPALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEKVYPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIG
LRVLTRPMGDRLPQIYRTLGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVSITTLTFGKEFTAAIEAKQVAAQ
EAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIANNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLEPKK
GENE ID: 11331 PHB2 | prohibitin 2 [Homo sapiens] (Over 10 PubMed links)
Score = 310 bits (794), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 210/273 (76%), Gaps = 2/273 (0%)
Query 9 IPGAP-ALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEK-VYPEGTHFM 66
+P P + LK+ + G Y + S++ V+GGHRA+ FNR+ G+++ + EG HF
Sbjct 12 LPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFR 71
Query 67 VPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYRTLGENYSER 126
+PWF+ PIIYD+RARP + S TGS DLQMV I LRVL+RP LP +Y+ LG +Y ER
Sbjct 72 IPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEER 131
Query 127 VLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVSITTLTFGK 186
VLPSI++E LK+VVA++NASQLITQR VS IR+ LTERA +F + LDDV+IT L+F +
Sbjct 132 VLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSR 191
Query 187 EFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIANNQAFITL 246
E+TAA+EAKQVA QEA+RA+F+VEKA+Q++R +++A+GEA++A+++G+A++ N +I L
Sbjct 192 EYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKL 251
Query 247 RKIEAAREIAQTIAQSANKVYLSSNDLLLNLQE 279
RKI AA+ I++TIA S N++YL++++L+LNLQ+
Sbjct 252 RKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284
>AT1g03910
MGSHGKGKRDRSGRQKKRRDESESGSESESYTSDSDGSDDLSPPRSSRRKKGSSSRRTRRRSSSDDSSDSDGGRKSKKRSSSKDYSEEKVTEYMSKKAQK
KALRAAKKLKTQSVSGYSNDSNPFGDSNLTETFVWRKKIEKDVHRGVPLEEFSVKAEKRRHRERMTEVEKVKKRREERAVEKARHEEEMALLARERARAE
FHDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLDGSDDLDIELSEPYMVFKKKKVRIGIWLNFQLSITNVYVEAEYKNDSACLLLRSRVDILLN
KGLTVKDMEELRDDIKMYLDLDRATPTRVQYWEALIVVCDWELAEARKRDALDRARVRGEEPPAELLAQERGLHAGVEADVRKLLDGKTHAELVELQLDI
ESQLRSGSAKVVEYWEAVLKRLEIYKAKACLKEIHAEMLRRHLHRLEQLSEGEDDVEVNPGLTRVVEENEEEINDTNLSDAEEAFSPEPVAEEEEADEAA
EAAGSFSPELMHGDDREEAIDPEEDKKLLQMKRMIVLEKQKKRLKEAMDSKPAPVEDNLELKAMKAMGAMEEGDAIFGSNAEVNLDSEVYWWHDKYRPRK
PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPIYTIEKDGTSAETCMIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFER
GILHLYFNFKRHRYRR
GENE ID: 58509 C19orf29 | chromosome 19 open reading frame 29 [Homo sapiens]
(Over 10 PubMed links)
Score = 394 bits (1012), Expect = 6e-109, Method: Compositional matrix adjust.
Identities = 242/644 (38%), Positives = 354/644 (55%), Gaps = 121/644 (18%)
Query 116 GYSNDSNPFGDSNLTETFVWRKKIEKDVHRGVP-LEEFSVKAEKRRHRE-RMTEVEKVKK 173
GY+N NPFGD+NL TF+W K +EK +G+ LEE +K +R +E E++KVK+
Sbjct 193 GYTNTDNPFGDNNLLGTFIWNKALEK---KGISHLEEKELKERNKRIQEDNRLELQKVKQ 249
Query 174 RREERAVEKARHEEEMALLARERARAEFHDWEKKEEEFHFDQSKVRSEIRLREGRLKPID 233
R ER EKA E+E+ +L RE+ F WE++E+ FH Q+K+RS+IR+R+GR KPID
Sbjct 250 LRLEREREKAMREQELEMLQREKEAEHFKTWEEQEDNFHLQQAKLRSKIRIRDGRAKPID 309
Query 234 VLCKHLDG-SDDLDIELSEPYMVFKKKKVRIGIWLNFQLSITNVYVEAEYKNDSACLLLR 292
+L K++ DDL +E+ EPY
Sbjct 310 LLAKYISAEDDDLAVEMHEPY--------------------------------------- 330