Novel Approaches for Detection and Characterization of Foodborne ...

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The forensic continuum for strain identification “Strain could not have come from…” Exclusion “Strain did absolutely come from…” Attribution Differentiation of Strains Methods Validation Biomarker Stability Extent of Genomic Diversity
Food Safety Detection at Genus Level Detection at Species Level Detection at Subspecies Level Detection at Serotype or Serovar Level
Page 1 and 2: Novel Approaches for Detection and
Page 3 and 4: There are no such things as applied
Page 5: Washington Post 12/30/04
Page 9 and 10: Reference Strain Collection
Page 11 and 12: Comparative Genomic Analysis Of E.
Page 13 and 14: High Density Oligonucleotide Tiling
Page 15 and 16: Relative Probe Intensity vs. Genome
Page 17 and 18: Identification of Polymorphisms in
Page 21 and 22: E. coli O157:H7 strain AB5
Page 23: E. coli O157:H7 strain 506
Page 26 and 27: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14
Page 28 and 29: Pyrosequencing assay for SNP identi
Page 30 and 31: •Bacterial genomes are known to b
Page 32 and 33: Optical Mapping: A Single Molecule
Page 34 and 35: Optical Mapping: Image Analysis Sin
Page 36 and 37: Alignment of Optical Maps to a Refe
Page 38 and 39: Optical Map of EC536 Shows a Deleti
Page 40 and 41: Cladistic Analysis of Escherichia c
Page 42 and 43: S. enterica I II mdh Parsimony ECOR
Page 44 and 45: ECOR27 ECOR70 ECOR10 ECOR61 ECOR30
Page 46 and 47: mutS H19 V16 V5 66 H26 V27 PM4 H1 P
Page 48 and 49: CLADISTIC BIOMARKERS “CLADE-BREAK
Page 50 and 51: Microbiological Methods lI: ‣ Pla
Page 52: Detecting Contaminants:

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