Partition function for RNA secondary structure

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Boltzmann probability of sequence alignment Peter Clote July 2007
McCaskill’s Algorithm Peter Clote July 2007
Page 1: Partition function for RNA secondar
Page 5 and 6: Peter Clote July 2007
Page 11 and 12: McCaskill’s algorithm base pairin
Page 23 and 24: Dirks, Pierce, “A partition funct
Page 29 and 30: Applications of Boltzmann partition
Page 31 and 32: Higher probability base pairs are m
Page 33 and 34: Mathews, Using an RNA secondary str
Page 35 and 36: • Pr[j is unpaired] Z i,j-1 /Z i,
Page 39 and 40: Applications of sampling (Ding-Lawr
Page 41 and 42: Sample output from Sfold Peter Clot
Page 43 and 44: Sampled base pair histogram from 10
Page 45 and 46: Hairpin frequency in Ala-tRNA sampl
Page 47 and 48: Boltzmann centroids Ding, Chan, Law
Page 49 and 50: Ding, Chan, Lawrence, RNA secondary
Page 51 and 52: Ding, Chan, Lawrence, RNA secondary
Page 53:
Ding, Chan, Lawrence, RNA secondary
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Partition function for RNA secondary structure

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