Corona Lite Introduction
Corona Lite Introduction
Corona Lite Introduction
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SNP Pipeline<br />
• Consensus and SNP calling<br />
• consensus_prep_and_wrapper_cmap_save_script.pl<br />
• -mates/match_dir – Output from preparation step<br />
• -cmap – Chromosome map file<br />
• -mlf3/mlr3 – Tag length<br />
• -ef3/er3 – Mismatches allowed<br />
• -o_dir – Output directory<br />
• -insert_start/_end – Pairing size for mate pair run<br />
22 © 2009 Applied Biosystems
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