Dirigent proteins in conifer defense: gene discovery, phylogeny, and ...
Dirigent proteins in conifer defense: gene discovery, phylogeny, and ...
Dirigent proteins in conifer defense: gene discovery, phylogeny, and ...
You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
40<br />
western red cedar (Thuja plicata Donn) heartwood. Holzforschung<br />
54: 246–254.<br />
Jones, D.T., Taylor, W.R. <strong>and</strong> Thornton, J.M. 1992. The rapid<br />
<strong>gene</strong>ration of mutation data matrices from prote<strong>in</strong> sequences.<br />
Comput. Appl. Biosci. 8: 275–282.<br />
Kim, M.K., Jeon, J.H., Fujita, M., Dav<strong>in</strong>, L.B. <strong>and</strong> Lewis,<br />
N.G. 2002. The western red cedar (Thuja plicata) 8–8´<br />
DIRIGENT family displays diverse expression patterns<br />
<strong>and</strong> conserved monolignol coupl<strong>in</strong>g specificity. Plant Mol.<br />
Biol. 49: 199–214.<br />
Kolosova, N., Miller, B., Ralph, S., Ellis, B.E., Douglas, C.,<br />
Ritl<strong>and</strong>, K. <strong>and</strong> Bohlmann, J. 2004. Isolation of high-quality<br />
RNA from gymnosperm <strong>and</strong> angiosperm trees. Biotechniques<br />
36: 821–824.<br />
Krokene, P., Solheim, H., Krekl<strong>in</strong>g, T. <strong>and</strong> Christiansen, E.<br />
2003. Inducible anatomical <strong>defense</strong> responses <strong>in</strong> Norway<br />
spruce stems <strong>and</strong> their possible role <strong>in</strong> <strong>in</strong>duced resistance.<br />
Tree Physiol. 23: 191–197.<br />
Lee, J., Parthier, B. <strong>and</strong> Lobler, M. 1996. Jasmonate signal<strong>in</strong>g<br />
can be uncoupled from abscisic acid signal<strong>in</strong>g <strong>in</strong> barley:<br />
identification of jasmonate-regulated transcripts which are<br />
not <strong>in</strong>duced by abscisic acid. Planta 199: 625–632.<br />
Mart<strong>in</strong>, D., Tholl, D., Gershenzon, J. <strong>and</strong> Bohlmann, J. 2002.<br />
Methyl jasmonate <strong>in</strong>duces traumatic res<strong>in</strong> ducts, terpenoid<br />
res<strong>in</strong> biosynthesis, <strong>and</strong> terpenoid accumulation <strong>in</strong> develop<strong>in</strong>g<br />
xylem of Norway spruce stems. Plant Physiol. 129: 1003–1018.<br />
Mart<strong>in</strong>, D.M., Gershenzon, J. <strong>and</strong> Bohlmann, J. 2003. Induction<br />
of volatile terpene biosynthesis <strong>and</strong> diurnal emission of<br />
methyl jasmonate <strong>in</strong> foliage of Norway spruce (Picea abies).<br />
Plant Physiol. 132: 1586–1599.<br />
Mart<strong>in</strong>, D.M., Fäldt, J. <strong>and</strong> Bohlmann, J. 2004. Functional<br />
characterization of n<strong>in</strong>e Norway spruce TPS <strong>gene</strong>s <strong>and</strong><br />
evolution of gymnosperm terpene synthases of the TPS-d<br />
subfamily. Plant Physiol. 135: 1908–1927.<br />
MacRae, W.D. <strong>and</strong> Towers, G.H.N. 1984. Biological activities<br />
of lignans. Phytochemistry 23: 1207–1220.<br />
Miller, B., Madilao, L.L., Ralph, S. <strong>and</strong> Bohlmann, J. 2005.<br />
Insect-<strong>in</strong>duced <strong>conifer</strong> <strong>defense</strong>. White p<strong>in</strong>e weevil <strong>and</strong> methyl<br />
jasmonate <strong>in</strong>duce traumatic res<strong>in</strong>osis, de novo formed<br />
volatile emissions, <strong>and</strong> accumulation of terpenoid synthase<br />
<strong>and</strong> putative octadecanoid pathway transcripts <strong>in</strong> Sitka<br />
spruce. Plant Physiol. 137: 369–382.<br />
Morgenstern, B., Frech, K., Dress, A. <strong>and</strong> Werner, T. 1998.<br />
DIALIGN: f<strong>in</strong>d<strong>in</strong>g local similarities by multiple sequence<br />
alignment. Bio<strong>in</strong>formatics 14: 290–294.<br />
Nagy, N.E., Franceschi, V.R., Solheim, H., Krekl<strong>in</strong>g, T. <strong>and</strong><br />
Christiansen, E. 2000. Wound-<strong>in</strong>duced traumatic res<strong>in</strong> duct<br />
development <strong>in</strong> stems of Norway spruce (P<strong>in</strong>aceae): anatomy<br />
<strong>and</strong> cytochemical traits. Am. J. Bot. 87: 302–313.<br />
Nagy, N.E., Fossdal, C.G., Krokene, P., Krekl<strong>in</strong>g, T., Lonneborg,<br />
A. <strong>and</strong> Solheim, H. 2004. Induced responses to pathogen<br />
<strong>in</strong>fection <strong>in</strong> Norway spruce phloem: changes <strong>in</strong> polyphenolic<br />
parenchyma cells, chalcone synthase transcript levels <strong>and</strong><br />
peroxidase activity. Tree Physiol. 24: 505–515.<br />
Nakai, K. <strong>and</strong> Horton, P. 1999. PSORT: a program for<br />
detect<strong>in</strong>g sort<strong>in</strong>g signals <strong>in</strong> <strong>prote<strong>in</strong>s</strong> <strong>and</strong> predict<strong>in</strong>g their<br />
subcellular localization. Trends Biochem. Sci. 24: 34–36.<br />
Page, R.D. 1996. TREEVIEW: an application to display<br />
phylo<strong>gene</strong>tic trees on personal computers. Comput. Appl.<br />
Biosci. 12: 357–358.<br />
Pauletti, P.M., Araujo, A.R., Young, M.C.M., Giesbrecht,<br />
A.M. <strong>and</strong> Bolzani, V.D. 2000. nor-Lignans from the leaves<br />
of Styrax ferrug<strong>in</strong>eus (Styracaceae) with antibacterial <strong>and</strong><br />
antifungal activity. Phytochemistry 55: 597–601.<br />
Raffa, K.F. <strong>and</strong> Berryman, A.A. 1982. Accumulation of<br />
monoterpenes associated with volatiles follow<strong>in</strong>g <strong>in</strong>oculation<br />
of gr<strong>and</strong> fir with a fungus transmitted by the fir engraver,<br />
Scolytus ventralis (Coleoptera: Scolytidae). Can. Entom. 114:<br />
797–810.<br />
Rahman, M.M. <strong>and</strong> Gray, A.I. 2002. Antimicrobial constituents<br />
from the stem bark of Feronia limonia. Phytochemistry<br />
59: 73–77.<br />
Ramakers, C., Rujiter, J.M., Deprez, R.H. <strong>and</strong> Moorman, A.F.<br />
2003. Assumption-free analysis of quantitative real-time polymerase<br />
cha<strong>in</strong> reaction (PCR) data. Neurosci. Lett. 339: 62–66.<br />
Reymond, P., Weber, H., Damond, M. <strong>and</strong> Farmer, E.E. 2000.<br />
Differential <strong>gene</strong> expression <strong>in</strong> response to mechanical<br />
wound<strong>in</strong>g <strong>and</strong> <strong>in</strong>sect feed<strong>in</strong>g <strong>in</strong> Arabidopsis. Plant Cell 12:<br />
707–720.<br />
Reymond, P., Bodenhausen, N., Van Poecke, R.M., Krishnamurthy,<br />
V., Dicke, M. <strong>and</strong> Farmer, E.E. 2004. A conserved<br />
transcript pattern <strong>in</strong> response to a specialist <strong>and</strong> a <strong>gene</strong>ralist<br />
herbivore. Plant Cell 16: 3132–3147.<br />
Riggleman, R.C., Fristensky, B. <strong>and</strong> Hadwiger, L.A. 1985. The<br />
disease resistance response <strong>in</strong> pea is associated with <strong>in</strong>creased<br />
levels of specific mRNAs. Plant Mol. Biol. 4: 81–86.<br />
Ro, D.-K., Arimura, G.-I., Lau, S.Y.W., Piers, E. <strong>and</strong><br />
Bohlmann, J., 2005. Loblolly p<strong>in</strong>e abietadienol/abietadienal<br />
oxidase PtAO is a multi-functional, multi-substrate cytochrome<br />
P450 monooxygenase. Proc. Natl. Acad. Sci. USA<br />
102: 8060–8065.<br />
Sankaranarayanan, R., Sekar, K., Banerjee, R., Sharma, V.,<br />
Surolia, A. <strong>and</strong> Vijayan, M. 1996. A novel mode of<br />
carbohydrate recognition <strong>in</strong> jacal<strong>in</strong>, a Moraceae plant lect<strong>in</strong><br />
with a beta-prism fold. Nat. Struct. Biol. 3: 596–603.<br />
Smyth, G.K. 2004. L<strong>in</strong>ear models <strong>and</strong> empirical Bayes methods<br />
for assess<strong>in</strong>g differential expression <strong>in</strong> microarray experiments.<br />
Stat. Appl. Genet. Mol. Biol. 3: 1–25.<br />
Voelckel, C., Weisser, W.W. <strong>and</strong> Baldw<strong>in</strong>, I.T. 2004. An<br />
analysis of plant–aphid <strong>in</strong>teractions by different microarray<br />
hybridization strategies. Mol. Ecol. 13: 3187–3195.<br />
Wang, Y., Nowak, G., Culley, D., Hadwiger, L.A. <strong>and</strong><br />
Fristensky, B. 1999. Constitutive expression of pea <strong>defense</strong><br />
<strong>gene</strong> DRR206 confers resistance to blackleg (Leptosphaeria<br />
maculans) disease <strong>in</strong> transgenic canola (Brassica napus). Mol.<br />
Plant-Microbe Inter. 12: 410–418.<br />
Wang, Y. <strong>and</strong> Fristensky, B. 2001. Transgenic canola l<strong>in</strong>es<br />
express<strong>in</strong>g pea <strong>defense</strong> <strong>gene</strong> DRR206 have resistance to<br />
aggressive blackleg isolates <strong>and</strong> to Rhizoctonia solani. Mol.<br />
Breed. 8: 263–271.<br />
Williams, C.E., Collier, C.C., Nemacheck, J.A., Liang, C. <strong>and</strong><br />
Cambron, S.E. 2002. A lect<strong>in</strong>-like wheat <strong>gene</strong> responds<br />
systemically to attempted feed<strong>in</strong>g by avirulent first-<strong>in</strong>star<br />
Hessian fly larvae. J. Chem. Ecol. 28: 1411–1428.<br />
Xia, Z.Q., Costa, M.A., Proctor, J., Dav<strong>in</strong>, L.B. <strong>and</strong> Lewis,<br />
N.G. 2000. <strong>Dirigent</strong>-mediated podophyllotox<strong>in</strong> biosynthesis<br />
<strong>in</strong> L<strong>in</strong>um flavum <strong>and</strong> Podophyllum peltatum. Phytochemistry<br />
55: 537–549.