Using SNOMED CT with the UMLS - Medical Ontology Research

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SNOMED CT Descriptions SNOMED CT Descriptions Table: DescriptionId|DescriptionStatus|ConceptId|Term|InitialCapitalStatus|DescriptionType| LanguageCode| 406636013|0|271737000|Anemia|0|1|en-US| MRCONSO.RRF: CUI|…|AUI|SAUI|SCUI|…|SAB|TTY|…|STR|…| C0002871|A2878480|406636013|271737000|SNOMEDCT|PT|Anemia| MRSAT.RRF: CUI|…|METAUI|STYPE|CODE|…|ATN|SAB|ATV|…| C0002871|A2878480|SAUI|271737000|DESCRIPTIONSTATUS|SNOMEDCT|0| C0002871|A2878480|SAUI|271737000|INITIALCAPITALSTATUS|SNOMEDCT|0| C0002871|A2878480|SAUI|271737000|DESCRIPTIONTYPE|SNOMEDCT|1| C0002871|A2878480|SAUI|271737000|LANGUAGECODE|SNOMEDCT|en-US|
SNOMED CT Relationships SNOMED CT Relationships Table RelationshipId|ConceptId1|RelationshipType|ConceptId2|CharacteristicType|Refinability|RelationshipGr oup| 85555020|263245004|116680003|15574005|0|0|0| MRCONSO CUI|…|AUI|SCUI|…|SAB|TTY|…|STR|…| C0281851|A3134233|263245004|SNOMEDCT|PT|Fracture of tarsal bone| C1292718|A3524752|116680003|SNOMEDCT|PT|Is a| C0272774|A3467699|15574005|SNOMEDCT|PT|Fracture of foot| MRREL |AUI1|STYPE1|REL|…|AUI2|STYPE2|RELA|RUI|SRUI|SAB|...|RG|DIR|…| |A3467699|SCUI|CHD|A3134233|SCUI|isa|R20132044|85555020|SNOMEDCT|0|Y| |A3134233|SCUI|PAR|A3467699|SCUI|inverse_isa|R20453736|85555020|SNOMEDCT|0|N| MRSAT |METAUI|STYPE|…|ATN|SAB|ATV|…| |R20132044|RUI|CHARACTERISTICTYPE|SNOMEDCT|0| |R20132044|RUI|REFINABILITY|SNOMEDCT|0|
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Using SNOMED CT with the UMLS IHTSD
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Outline • Overview of the UMLS
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Overview of the UMLS Introduction
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Motivation • Started in 1986 •
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Overview of the UMLS Overview throu
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Adrenal insufficiency Clinical vari
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AD in medical vocabularies • Syno
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MeSH Disease Endocrine system disea
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SNOMED International Disease/Diagno
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SNOMED CT (UMLS view) Disorder of e
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ICD-10 Endocrine, nutritional and m
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organize concepts Disease Endocrine
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UMLS view Immune system diseases Di
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Categorize concepts • High-level
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Lexical knowledge Adrenal gland dis
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Additional knowledge: UMLS editors
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Overview of the UMLS UMLS Knowledge
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UMLS Metathesaurus
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Source Vocabularies (2011AA) • 16
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Biomedical terminologies (cont’d)
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Integrating subdomains Clinical rep
Page 43 and 44: Addison’s Disease: Concept Diseas
Page 45 and 46: Metathesaurus Evolution over time
Page 47 and 48: Symbolic relations • Relation ◦
Page 49 and 50: Everything else • Co-occurrence i
Page 51 and 52: UMLS Semantic Network
Page 53 and 54: Semantic Network • Semantic netwo
Page 55 and 56: Associative (non-isa) relationships
Page 57 and 58: Relationships may inherit semantics
Page 59 and 60: SPECIALIST Lexicon • Content ◦
Page 61 and 62: Orthography • Spelling variants
Page 63 and 64: Lexical tools • To manage lexical
Page 65 and 66: Normalization Example Hodgkin Disea
Page 67 and 68: Indexes • Word index ◦ word to
Page 69 and 70: Overview of the UMLS Conclusions
Page 71 and 72: Trans-namespace integration Addison
Page 73 and 74: Dr. Kin Wah Fung SNOMED CT integrat
Page 75 and 76: Different views of synonymy • In
Page 77 and 78: UMLS editing process • Analysis o
Page 79 and 80: Examples of split SNOMED CT synonym
Page 81 and 82: SNOMED CT Concept View Acetaminophe
Page 83 and 84: Common types of cross-hierarchy mer
Page 85 and 86: Extent of disagreement • Splittin
Page 87 and 88: Dr. Kin Wah Fung Representing SNOME
Page 89 and 90: SNOMED CT is more complex than othe
Page 91 and 92: Rich Release Format (RRF) • Also
Page 93: SNOMED CT Concepts SNOMED CT Concep
Page 97 and 98: Dr. Olivier Bodenreider Applying UM
Page 99 and 100: Beta-blocker in SNOMED CT
Page 101 and 102: Finding variants in other sources S
Page 103 and 104: Ms. Janice H. Willis Applying UMLS
Page 105 and 106: SNOMED CT QA What we learn from mai
Page 107: UTS browser • https://uts.nlm.nih
Page 110 and 111: Search options include limiting by
Page 112 and 113: Metathesaurus Browser Tree search t
Page 114 and 115: SNOMED CT-centric display Click CUI
Page 116 and 117: Metathesaurus Browser Tree search d
Page 118: http://www.nlm.nih.gov/research/uml
Page 121 and 122: Getting started with the UTS API
Page 123 and 124: Getting a proxy granting ticket pri
Page 125 and 126: Getting a single-use proxy ticket p
Page 127 and 128: Mapping • ‘Mapping’ generally
Page 129 and 130: Mapping terms to a terminology •
Page 131 and 132: Example of synonym substitution •
Page 133 and 134: Inter-terminology mapping • Make
Page 135 and 136: The IntraMap algorithm (2) 2. A tar
Page 137 and 138: Use of MetaMap for inter-terminolog
Page 139 and 140: Motivation • Translation ◦ Seed
Page 141 and 142: Multi-lingual vocabularies in the U
Page 143 and 144: Finding terms in other languages
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Addison’s disease in UMLS
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C0001403 in Dutch Source Term type
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Dr. James T. Case Use case: The rol
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Access to the USCRS
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Dentistry SNOMED CT International 1
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Why integrate UMLS with a SCT brows
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No SNOMED CT Description Informs yo
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UMLS Concept Concept exists in ICD9
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References: UMLS home page • UMLS
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References • UMLS as a research p
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References • SNOMED CT and UMLS
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Using SNOMED CT with the UMLS - Medical Ontology Research

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