Ligands in Coot

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Ligand Environment LayoutInitial residue placement
Optimis<strong>in</strong>g the m<strong>in</strong>imiser
Page 2 and 3: Model-Building Proteins andLigands
Page 4 and 5: Feature IntegrationRefinementExtern
Page 6 and 7: Usage Tips: Navigation(Type) Ctrl-G
Page 8 and 9: Using NVIDIA CardsFor antialiasing:
Page 10: Previous
Page 20 and 21: Networking...PDBe interface...Drag
Page 22 and 23: Using the API21/80
Page 24 and 25: RCrane: Semi-AutomatedBuilding of R
Page 27 and 28: Ligands Tools in Coot“What should
Page 29 and 30: 2D Ligand BuilderFree sketchSbase s
Page 31: Cocktail Examples
Page 35 and 36: Parmatisation issues...(what if the
Page 37 and 38: Ligand RepresenationBond orders (fr
Page 39 and 40: Chemical Features
Page 41 and 42: Chiral Centre InversionInverted chi
Page 43 and 44: Ligand Environment LayoutBinding po
Page 45 and 46: Ligand Enviroment LayoutConsiderati
Page 47: ”Don't overlap the ligand”
Page 51 and 52: Determination of theSubstitution Co
Page 54: 58/80
Page 57 and 58: Layout Problems
Page 59 and 60: Layout Examples3uic
Page 61 and 62: Layout Problems
Page 63 and 64: Modelling CarbohydratesValidation,M
Page 65 and 66: Carbohydrate LinksThomas Lütteke (
Page 73: Refinement Trials(NAG-ASN example)
Page 77 and 78: Technical Details
Page 79: AcknowledgementsKeith WilsonEleanor

Ligands in Coot

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