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Latest trends on systems - Wseas.us

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LATEST TRENDS <strong>on</strong> SYSTEMS (Volume I)Plenary Lecture 7The Origin of Life: Informati<strong>on</strong> Theory PerspectiveProfessor Krzysztof CyranVice Head of Institute of InformaticsSilesian University of TechnologyGliwice, PolandE-mail: Krzysztof.Cyran@polsl.plAbstract: The Life <strong>on</strong> Earth can be c<strong>on</strong>sidered as <strong>on</strong>e of the most complex <strong>systems</strong> that the science tries tounderstand. In particular the beginning of Life is still an unsolved problem having many implicati<strong>on</strong>s to the theory of<strong>systems</strong> Current theories c<strong>on</strong>cerning the origin of life fall into two groups defined by Dys<strong>on</strong> in his famo<strong>us</strong> bookOrigins of Life. The first group assumes that the transiti<strong>on</strong> form abiotic to biotic world occurred with the emergence ofself-replicating RNA molecules and is referred to as RNA-world hypothesis. This most comm<strong>on</strong>ly acceptedhypothesis requires the existence of the RNA-replicase ribozyme the search of which is described by McGinness andJoyce in 2003. The evoluti<strong>on</strong> of new genes after appearance of the RNA-replicase is challenged by instability ofEigen’s hypercycles composed of many genes supporting cyclically their replicati<strong>on</strong>. An alternative approach,proposed by Niesert as a compartment model with random segregati<strong>on</strong> of genes, proved to be stable for very limitednumber of genes. Significant advance in the RNA-world theory has been d<strong>on</strong>e in 2007 by Ma et al. who performedintensive computer simulati<strong>on</strong>s dem<strong>on</strong>strating the emergence of the auto-catalytic and self-replicating activity of RNAolig<strong>on</strong>ucleotides. Another relevant computer simulati<strong>on</strong>-based study was reported in 2007 by Baaske et al. whoobserved the extreme accumulati<strong>on</strong> of nucleotides in simulated hydrothermal pores. The sec<strong>on</strong>d group of hypothesesderives life from the biochemistry of amino acids and their polymers, proteins. This group encompasses such theorieslike Dys<strong>on</strong>’s theory of double origin which requires at least 8-10 types of m<strong>on</strong>omers for emergence of the first autocatalysingprotocells and therefore excludes from this role nucleotides, or theories described in 2007 by Rode et al.assuming that salt-induced peptide formati<strong>on</strong> (SIPF) reacti<strong>on</strong> could have been the crucial step from chemistrytowards biology. In the lecture these theories will be reviewed as well as models of early stages of RNA-world will bepresented. The latter methodology will be based <strong>on</strong> intensive computer simulati<strong>on</strong>s of the package model withrandom segregati<strong>on</strong> of genetic material. The improvement proposed here is modeling the envir<strong>on</strong>mental changes ofthe evolving populati<strong>on</strong> by stochastic fluctuati<strong>on</strong> of the number of replicating molecules (NORM) in the compartment.This stochasticity can be the sole source of variati<strong>on</strong> or it can be added to the cell-to-cell stochasticity originallyproposed by Niesert. Further enhancement relying <strong>on</strong> BP extincti<strong>on</strong> c<strong>on</strong>diti<strong>on</strong>s applied to simulated populati<strong>on</strong> ofRNA protocells will also be proposed. The aim is to model the evoluti<strong>on</strong> of the early RNA-world before theappearance of chromosomal architecture of genomes. Finally, the comparis<strong>on</strong> of the single-strand and thecompartment models will be carried out from the informati<strong>on</strong> processing perspective <strong>us</strong>ing the Shann<strong>on</strong> informati<strong>on</strong>theory. The potential of models for preserving the genetic informati<strong>on</strong> will be studied for the compartment and thesingle strand models with the complexity threshold estimated in Demetri<strong>us</strong>-Kimmel BP model supplemented withpossibility of phosphodiester b<strong>on</strong>d break. The advantage of this latter model lies in its potential for obtaining reliableestimates of its parameters. Since the probability of the break of a phosphodiester b<strong>on</strong>d between two nucleotides canbe experimentally received for feasible c<strong>on</strong>diti<strong>on</strong>s of the early Earth, the model can be more accurate than modelsbased <strong>on</strong> informati<strong>on</strong> balance between mutati<strong>on</strong> and natural selecti<strong>on</strong>. Advantageo<strong>us</strong> in the proposed comparis<strong>on</strong> isalso the <strong>us</strong>e of informati<strong>on</strong> amount as a measure of evoluti<strong>on</strong>ary capacity of hypothetical models of the RNA-world. Inthis c<strong>on</strong>text it should be noticed that the problem of error catastrophe is equally important for both groups of theoriesc<strong>on</strong>cerning the origin of life, although for each of them the acceptable value of complexity threshold is differentTherefore, the reliable estimate of this threshold based <strong>on</strong> methodology proposed could favor <strong>on</strong>e or the other group,or at least predict the limits for the length of newly arisen genomes and in that matter c<strong>on</strong>tribute to revealing themystery of Life.Brief Biography of the Speaker:Krzysztof A. Cyran was born in Cracow, Poland, in 1968. He received MSc degree in computer science (1992) andPhD degree (with h<strong>on</strong>ours) in technical sciences with specialty in computer science (2000) from the SilesianUniversity of Technology SUT, Gliwice, Poland. His PhD dissertati<strong>on</strong> addresses the problem of image recogniti<strong>on</strong>with the <strong>us</strong>e of computer generated holograms applied as ring-wedge detectors.ISSN: 1792-4235 26 ISBN: 978-960-474-199-1

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