Stuart McNicholas: ccp4mg - York Structural Biology Laboratory ...

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Stuart McNicholas: ccp4mg - York Structural Biology Laboratory ...

Stuart McNicholas: ccp4mg - York Structural Biology Laboratory ...

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Other Display Details●●●●All objects●●●May be visible/invisible“Flash”Be transparent with arbitrary opacityOne can have multiple views (e.g. side-by-sidestereo)Depth-cueing fog, clipping, background colourand lighting are all user definableLots of stuff is highly customizable

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Coot: Model-building tools for Molecular Graphics

The Patterson Function Kevin Cowtan cowtan@ysbl.york.ac.uk

twinning, pseudo symmetry, order-disorder

Refinement of Macromolecular structures using REFMAC5

Coot: Model-building tools for Molecular Graphics

Simple REFMAC tutorials - York Structural Biology Laboratory

Using Molrep for fitting into the electron density

Tutorial: Ligand Fitting with Coot

'Parrot' tutorial

Other Display Details●●●●All objects●●●May be visible/invisible“Flash”Be transparent with arbitrary opacityOne can have multiple views (e.g. side-by-sidestereo)Depth-cueing fog, clipping, background colourand lighting are all user definableLots of stuff is highly customizable

Page 1 and 2: CCP4MGCCP4 Molecular Graphics Progr
Page 3 and 4: Displaying Molecules (styles)●CCP
Page 7 and 8: Atom Selections●More complicated
Page 9 and 10: Selection Browser
Page 11 and 12: Selection Browser
Page 13: Picture Wizard●●●The picture
Page 19: Electron Density●●●●Electro
Page 23: Geometry●●In “geometry mode
Page 28 and 29: PISAThe EBI website defines PISA:PI
Page 30: PISA●●●There is a command lin
Page 34: Movies●●●Movies are creates b
Page 40 and 41: Documentation●●●Lots of user
Page 42: Acknowledgements●●●●●●