PGAS Programming with UPC and Fortran Coarrays

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•19/12/2012Parallel ProgrammingLanguages and ApproachesDr Alan D SimpsonTechnical Director, EPCCa.simpson@epcc.ed.ac.uk+44 131 650 5120Contents• A Little Bit of History– Non-Parallel Programming Languages– Vector Processing– Data Parallel– Early Parallel Languages• Current Status of Parallel Programming– Parallelisation Strategies– Mainstream HPC• Alternative Parallel Programming Languages– Single-Sided Communication– PGAS– Accelerators– Hybrid Approaches• Final Remarks and SummaryParallel Programming Languages 2•1
•19/12/2012Contents• A Little Bit of History– Non-Parallel Programming Languages– Vector Processing– Data Parallel– Early Parallel Languages• Current Status of Parallel Programming– Parallelisation Strategies– Mainstream HPC• Alternative Parallel Programming Languages– Single-Sided Communication– PGAS– Accelerators– Hybrid Approaches• Final Remarks and SummaryParallel Programming Languages 3Non-Parallel Programming Languages• Serial languages are also important for HPC– Used for much scientific computing– Basis for parallel languages• PRACE Survey results:FortranCC++PythonPerlOtherJavaChapelCo-array Fortran0 50 100 150 200 250Response Count• PRACE Survey indicates that nearly all applications are written in:– Fortran: well suited for scientific computing– C/C++: allows good access to hardware• Supplemented by– Scripts using Python, PERL and BASH– PGAS languages starting to be usedParallel Programming Languages 4•2
Page 1: PGAS Programming withUPC and Fortra
Page 5 and 6: •19/12/2012Vectorisation• Somet
Page 7 and 8: •19/12/2012Contents• A Little B
Page 9 and 10: •19/12/2012Shared Memory• Multi
Page 11 and 12: •19/12/2012Single-Sided Communica
Page 13 and 14: •19/12/2012PGAS Languages• The
Page 15 and 16: •19/12/2012Hybrid Approaches• U
Page 17 and 18: •19/12/2012References• PRACE-PP
Page 19 and 20: UPCUnified Parallel CParallel exten
Page 21 and 22: Private vs. shared memory spaceConc
Page 23 and 24: Shared array distributionIf a share
Page 25 and 26: Example: vector addition (1)#define
Page 27 and 28: “Static” keywordensures shared
Page 29 and 30: References• UPC Language Specific
Page 31 and 32: Sample PBS script for XE6#!/bin/bas
Page 33 and 34: Brief recap… private and shared d
Page 35 and 36: Multi-dimensional dataUPC can distr
Page 37 and 38: Multi-dimensional data - Case 1shar
Page 39 and 40: Multi-dimensional data - Case 3slab
Page 41 and 42: Static vs. dynamic compilation (3)s
Page 43 and 44: Debugging barriersthe optional valu
Page 45 and 46: Example: Vector addition (3/3)Advan
Page 47 and 48: Improved data distributionCAB00 0 0
Page 49 and 50: C pointersA pointer in C is a data
Page 51 and 52: UPC pointersUPC pointers have three
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Pointer castingcasting a shared poi
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Non-collective dynamic allocation (
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Creating locksinitial state of a ne
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Example: Dining Philosophers (contd
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Broadcastshared[] int A[2];shared[2
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Final summarydata distribution & wo
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12/19/2012The FortranProgramming Mo
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12/19/2012Fortran 2008 coarray mode
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12/19/2012Fortran coarraysBasic Fea
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12/19/2012What are coarrays?• Arr
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12/19/2012Making remote references
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12/19/2012Synchronisation• code e
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12/19/2012Example2: Calculate densi
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12/19/2012Exercise Session 1• Loo
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12/19/2012OpenMP implementationmemo
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12/19/2012MPIprocess 0memoryprocess
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12/19/2012High Performance Fortran
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12/19/2012UPCthreadthreadthreadmemo
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12/19/2012Fortran coarray modelproc
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12/19/2012Parallel Programmingwith
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12/19/2012Edge detection and pictur
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12/19/2012More Coarray FeaturesPara
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12/19/20122D Data• However, image
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12/19/2012Codimensions: What They M
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12/19/2012this_image() & image_inde
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12/19/2012Allocatable Coarrays• C
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12/19/2012Coarrays and Procedures
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12/19/2012Summary• Coarrays with
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segmentsegment12/19/2012More on Syn
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12/19/2012Synchronisation mistakes
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12/19/2012Other Synchronisation•
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12/19/2012More on Cosubscripts• i
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12/19/2012Coarray Technical Specifi
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12/19/2012TS: Collective intrinsic
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12/19/2012Experiences withCoarraysP
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12/19/2012Implementations we have u
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12/19/2012Adding coarrays to existi
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12/19/2012AllReduce (everyone gets,
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12/19/2012Synchronisation (one to m
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12/19/2012Coarray Benchmark Suite
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microseconds12/19/2012Pingpong (sma
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12/19/20123D Halo Swap on XE6 (weak
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12/19/2012Data Structuresuse,intrin
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12/19/2012Solve the puzzles and wri
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12/19/2012Distributed remote gather
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Performance (TFlop/s)12/19/2012HIME
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12/19/2012References• http://lacs
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PGAS Programming with UPC and Fortran Coarrays

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