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Making Oil at Warp Speed - Chemical Engineering - University of ...

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Understanding N<strong>at</strong>ure Using Simul<strong>at</strong>ions<br />

Pr<strong>of</strong>essor Ronald Larson and recent PhD<br />

gradu<strong>at</strong>e, Dr. Susan Duncan (above)<br />

are using advanced molecular dynamics<br />

simul<strong>at</strong>ions to help understand how<br />

lung surfactant works.<br />

The inside <strong>of</strong> the lung contains<br />

millions <strong>of</strong> small air-filled sacks called<br />

alveoli, which provide a large surface<br />

area for absorbing oxygen into the<br />

blood. These alveoli, which expand<br />

and contract considerably each time we<br />

inhale and exhale, are lined with a layer<br />

<strong>of</strong> lung surfactant—a mixture <strong>of</strong> lipids and<br />

proteins th<strong>at</strong> reduces and regul<strong>at</strong>es the<br />

surface tension.<br />

Without functional lung surfactant,<br />

the work <strong>of</strong> bre<strong>at</strong>hing is too hard to<br />

perform, resulting in respir<strong>at</strong>ory distress<br />

syndrome (RDS), the most common<br />

complic<strong>at</strong>ion in prem<strong>at</strong>ure infants and a<br />

leading thre<strong>at</strong> to the survival <strong>of</strong> p<strong>at</strong>ients<br />

suffering from lung injury.<br />

Although surfactant replacements<br />

have gre<strong>at</strong>ly reduced the mortality r<strong>at</strong>e<br />

<strong>of</strong> neon<strong>at</strong>al RDS, current replacements<br />

are not optimal and acute RDS in<br />

p<strong>at</strong>ients suffering from lung injury has<br />

proven more difficult to tre<strong>at</strong>.<br />

Without functional lung surfactant,<br />

the work <strong>of</strong> bre<strong>at</strong>hing is too hard<br />

to perform, resulting in respir<strong>at</strong>ory<br />

distress syndrome (RDS), the most<br />

common complic<strong>at</strong>ion in prem<strong>at</strong>ure<br />

infants and a leading thre<strong>at</strong> to the<br />

survival <strong>of</strong> p<strong>at</strong>ients suffering from<br />

lung injury.<br />

In order to aid the design <strong>of</strong> effective<br />

surfactant replacements, further research<br />

is needed to understand the mechanisms<br />

th<strong>at</strong> promote physiological surfactant<br />

function. To be effective, lung surfactant<br />

layers must perform two seemingly<br />

conflicting tasks: they must be solid<br />

enough to avoid irreversible collapse<br />

upon compression, and fluid enough<br />

to adsorb and respread readily upon<br />

expansion. Both phase and structural<br />

(reversible collapse) transitions have<br />

been implic<strong>at</strong>ed in this process.<br />

In a recent Biochemica et Biophysica<br />

Acta: Biomembranes article, Susan and<br />

Ron considered the role <strong>of</strong> individual<br />

surfactant components on collapse<br />

transitions in individual layers (called<br />

“monolayers”) <strong>of</strong> lung surfactant. They<br />

used molecular dynamics simul<strong>at</strong>ions,<br />

which allow each molecule in a lung<br />

surfactant mixture to be tracked on a<br />

computer (figure <strong>at</strong> right). The simul<strong>at</strong>ions<br />

showed th<strong>at</strong> the addition <strong>of</strong> lung<br />

surfactant proteins called SP-B and<br />

SP-C had a strong impact on monolayer<br />

collapse, and allowed these monolayers<br />

to fold more readily. In addition, by<br />

“mut<strong>at</strong>ing” the peptides, they discovered<br />

th<strong>at</strong> the peptides needed to be<br />

sufficiently “hydrophobic” to induce<br />

C O L L E G E O F E N G I N E E R I N G / CHEMICAL ENGINEERING / w w w . c h e . e n g i n . u m i c h . e d u<br />

folding—th<strong>at</strong> is, they needed to be<br />

significantly w<strong>at</strong>er-repellant, so th<strong>at</strong> they<br />

would penetr<strong>at</strong>e more deeply into the<br />

surfactant monolayer.<br />

“This research is leading to a better<br />

understanding <strong>of</strong> how lung surfactant<br />

does the marvelous work <strong>of</strong> allowing<br />

each <strong>of</strong> us to take our next bre<strong>at</strong>h,” Ron<br />

says. “And it could help in the design<br />

<strong>of</strong> effective replacements for those who<br />

temporarily lack effective lung surfactant<br />

and are <strong>at</strong> risk <strong>of</strong> dying because <strong>of</strong> it.”<br />

Two fluid monolayers <strong>of</strong> lipid, with a surfactant<br />

protein fragment <strong>of</strong> SP-B (yellow) respond to<br />

compression by buckling and folding (top). After<br />

the simul<strong>at</strong>ion is run longer, fully-developed folds<br />

are evident (bottom). Upon re-expansion the<br />

folds reincorpor<strong>at</strong>e into the monolayer. The two<br />

monolayers are separ<strong>at</strong>ed by w<strong>at</strong>er (shown here as<br />

small white dots).<br />

Ron Larson’s webpage:<br />

www.che.engin.umich.edu/people/larson.html<br />

7

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