The All-Species Living Tree (Release LTPs111): 16S rRNA ... - Silva

The All-Species Living Tree (Release LTPs111): 

February 2013 

16S rRNA-based phylogenetic tree harboring all type strains of all species 

with validly published names up to August 2012. 

Type species are highlighted in red. Incorrectly affiliated and ungrouped 

species are indicated by their valid family. 

For suggestions please contact: 

linving-tree@arb-silva.de 

For further information and downloads: 

www.elsevier.de/syapm 

www.arb-silva.de/projects/living-tree 

www.arb-home.de 

www.bacterio.cict.fr 

References: 

R. Munoz, P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, R. 

Rosselló-Móra. Release LTPs104 of the All-Species Living Tree. Syst. Appl. 

Microbiol. 34 (2011) 169-170. 

http://www.dx.doi.org/10.1016/j.syapm.2011.03.001 

P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.-H. Schleifer, F.O. Glöckner, R. Rosselló- 

Móra. Update of the All-Species Living Tree Project based on 16S and 23S rRNA 

sequence analyses. Syst. Appl. Microbiol. 33 (2010) 291-299. 

http://www.dx.doi.org/10.1016/j.syapm.2010.08.001 

P. Yarza, M. Richter, J. Peplies, J. Euzéby, R. Amann, K.-H. Schleifer, W. Ludwig, F.O. 

Glöckner, R. Rosselló-Móra. The All-Species Living Tree Project: a 16S rRNA-based 

phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 31 (2008) 

241-250. 

http://www.dx.doi.org/10.1016/j.syapm.2008.07.001

Bacteria (9340) 

Proteobacteria (3196) 

Gammaproteobacteria and Betaproteobacteria (2094) 

Enterobacteriaceae and Pasteurellaceae (316) 

GU810925, Erwinia oleae, Enterobacteriaceae 

GU166291, Erwinia typographi, Enterobacteriaceae 

GQ367478, Pantoea calida, Enterobacteriaceae 

GQ367483, Pantoea gaviniae, Enterobacteriaceae 

FR870447, Erwinia toletana, Enterobacteriaceae 

AJ233413, Pantoea cypripedii, Enterobacteriaceae 

DQ504305, Pantoea dispersa, Enterobacteriaceae 

JF295057, Pantoea wallisii, Enterobacteriaceae 

FN547376, Erwinia aphidicola, Enterobacteriaceae 

Z96086, Erwinia persicina, Enterobacteriaceae 

AJ233417, Erwinia rhapontici, Enterobacteriaceae 

AM055716, Erwinia tasmaniensis, Enterobacteriaceae 

AJ233410, Erwinia amylovora, type sp., Enterobacteriaceae 

AB546198, Erwinia uzenensis, Enterobacteriaceae 

EU216736, Pantoea eucrina, Enterobacteriaceae 

AJ233414, Erwinia mallotivora, Enterobacteriaceae 

JQ809696, Erwinia psidii, Enterobacteriaceae 

Y13250, Erwinia tracheiphila, Enterobacteriaceae 

AJ233423, Pantoea agglomerans, type sp., Enterobacteriaceae 

EF688012, Pantoea vagans, Enterobacteriaceae 

EF688009, Pantoea eucalypti, Enterobacteriaceae 

EF688010, Pantoea anthophila, Enterobacteriaceae 

EU216737, Pantoea conspicua, Enterobacteriaceae 

EF688011, Pantoea deleyi, Enterobacteriaceae 

EU216735, Pantoea brenneri, Enterobacteriaceae 

U80196, Pantoea ananatis, Enterobacteriaceae 

AY530795, Pantoea allii, Enterobacteriaceae 

U80208, Pantoea stewartii subsp. stewartii, Enterobacteriaceae 

EU216734, Pantoea septica, Enterobacteriaceae 

AJ010486, Enterobacter pyrinus, Enterobacteriaceae 

AB004748, Enterobacter gergoviae, Enterobacteriaceae 

AJ508302, Enterobacter hormaechei, Enterobacteriaceae 

AF530476, Escherichia vulneris, Enterobacteriaceae 

AJ853891, Enterobacter ludwigii, Enterobacteriaceae 

EU721605, Enterobacter mori, Enterobacteriaceae 

Z96078, Enterobacter cancerogenus, Enterobacteriaceae 

AB004744, Enterobacter asburiae, Enterobacteriaceae 

Z96077, Enterobacter nimipressuralis, Enterobacteriaceae 

U78182, Raoultella ornithinolytica, Enterobacteriaceae 

AF129443, Raoultella planticola, type sp., Enterobacteriaceae 

AB004750, Enterobacter aerogenes, Enterobacteriaceae 

EF688007, Tatumella terrea, Enterobacteriaceae 

AJ233437, Tatumella ptyseos, type sp., Enterobacteriaceae 

FJ756351, Tatumella punctata, Enterobacteriaceae 

AB021400, Pseudomonas flectens, Pseudomonadaceae 

EU344769, Tatumella morbirosei, Enterobacteriaceae 

DQ838096, Tatumella citrea, Enterobacteriaceae 

AF008579, Kluyvera ascorbata, type sp., Enterobacteriaceae 

AF047186, Kluyvera georgiana, Enterobacteriaceae 

AF310217, Kluyvera intermedia, Enterobacteriaceae 

AF310218, Kluyvera cryocrescens, Enterobacteriaceae 

AF025368, Citrobacter braakii, Enterobacteriaceae 

AF025369, Citrobacter murliniae, Enterobacteriaceae 

AF025373, Citrobacter werkmanii, Enterobacteriaceae 

AF129440, Klebsiella oxytoca, Enterobacteriaceae 

AJ233408, Citrobacter freundii, type sp., Enterobacteriaceae 

AB519796, Yokenella regensburgei, type sp., Enterobacteriaceae 

AF025367, Citrobacter gillenii, Enterobacteriaceae 

AJ233400, Buttiauxella agrestis, type sp., Enterobacteriaceae 

AJ233401, Buttiauxella brennerae, Enterobacteriaceae 

AJ233402, Buttiauxella ferragutiae, Enterobacteriaceae 

AJ233403, Buttiauxella gaviniae, Enterobacteriaceae 

AJ233406, Buttiauxella warmboldiae, Enterobacteriaceae 

AJ233405, Buttiauxella noackiae, Enterobacteriaceae 

JF295053, Pantoea rodasii, Enterobacteriaceae 

JF295055, Pantoea rwandensis, Enterobacteriaceae 

AJ233404, Buttiauxella izardii, Enterobacteriaceae 

AB004749, Enterobacter amnigenus, Enterobacteriaceae 

AJ508301, Enterobacter kobei, Enterobacteriaceae 

Y17658, Raoultella terrigena, Enterobacteriaceae 

EF059838, Cronobacter dublinensis subsp. lactaridi, Enterobacteriaceae 

EF059892, Cronobacter dublinensis subsp. dublinensis, Enterobacteriaceae 

EF059841, Cronobacter dublinensis subsp. lausannensis, Enterobacteriaceae 

EF059845, Cronobacter muytjensii, Enterobacteriaceae 

EF059877, Cronobacter universalis, Enterobacteriaceae 

EF059891, Cronobacter turicensis, Enterobacteriaceae 

EF059881, Cronobacter malonaticus, Enterobacteriaceae 

EF088379, Cronobacter sakazakii, type sp., Enterobacteriaceae 

FN539031, Cronobacter condimenti, Enterobacteriaceae 

FJ267523, Shimwellia pseudoproteus, type sp., Enterobacteriaceae 

FJ267520, Shimwellia blattae, Enterobacteriaceae 

EF488759, Enterobacter oryzae, Enterobacteriaceae 

AY563134, Enterobacter radicincitans, Enterobacteriaceae 

EU672801, Enterobacter arachidis, Enterobacteriaceae 

AJ508303, Enterobacter cowanii, Enterobacteriaceae 

DQ273684, Enterobacter pulveris, Enterobacteriaceae 

AJ508775, Escherichia albertii, Enterobacteriaceae 

X80725, Escherichia coli, type sp., Enterobacteriaceae 

X96963, Shigella flexneri, Enterobacteriaceae 

AF530475, Escherichia fergusonii, Enterobacteriaceae 

FR870445, Shigella sonnei, Enterobacteriaceae 

X96966, Shigella dysenteriae, type sp., Enterobacteriaceae 

HQ992945, Citrobacter koseri, Enterobacteriaceae 

AB273741, Citrobacter youngae, Enterobacteriaceae 

AY373829, Salmonella subterranea, Enterobacteriaceae 

AY373830, Trabulsiella guamensis, type sp., Enterobacteriaceae 

DQ453129, Trabulsiella odontotermitis, Enterobacteriaceae 

FR870441, Citrobacter amalonaticus, Enterobacteriaceae 

AF025371, Citrobacter farmeri, Enterobacteriaceae 

AF025363, Citrobacter rodentium, Enterobacteriaceae 

AF025364, Citrobacter sedlakii, Enterobacteriaceae 

AF008580, Salmonella enterica subsp. arizonae, Enterobacteriaceae 

EU014684, Salmonella enterica subsp. houtenae, Enterobacteriaceae

EU014680, Salmonella enterica subsp. indica, Enterobacteriaceae 

EU014685, Salmonella enterica subsp. salamae, Enterobacteriaceae 

EU014688, Salmonella enterica subsp. diarizonae, Enterobacteriaceae 

EF643377, Mangrovibacter plantisponsor, type sp., Enterobacteriaceae 

AF029227, Salmonella bongori, Enterobacteriaceae 

AE006468, Salmonella enterica subsp. enterica, type sp., Enterobacteriaceae 

Z96079, Enterobacter cloacae subsp. dissolvens, Enterobacteriaceae 

AJ251469, Enterobacter cloacae subsp. cloacae, type sp., Enterobacteriaceae 

AF250285, Klebsiella singaporensis, Enterobacteriaceae 

AJ783916, Klebsiella variicola, Enterobacteriaceae 

X87276, Klebsiella pneumoniae subsp. pneumoniae, type sp., Enterobacteriaceae 

Y17657, Klebsiella pneumoniae subsp. rhinoscleromatis, Enterobacteriaceae 

AF130982, Klebsiella pneumoniae subsp. ozaenae, Enterobacteriaceae 

AJ854062, Serratia ureilytica, Enterobacteriaceae 

GU814270, Enterobacter soli, Enterobacteriaceae 

AF493976, Cedecea davisae, type sp., Enterobacteriaceae 

AB086230, Cedecea neteri, Enterobacteriaceae 

AB050826, Edwardsiella ictaluri, Enterobacteriaceae 

AB050827, Edwardsiella tarda, type sp., Enterobacteriaceae 

AB050825, Edwardsiella hoshinae, Enterobacteriaceae 

GU562337, Gibbsiella quercinecans, type sp., Enterobacteriaceae 

AB004751, Serratia rubidaea, Enterobacteriaceae 

AB061685, Serratia marcescens subsp. sakuensis, Enterobacteriaceae 

EU036987, Serratia nematodiphila, Enterobacteriaceae 

AJ233431, Serratia marcescens subsp. marcescens, type sp., Enterobacteriaceae 

AJ233432, Serratia odorifera, Enterobacteriaceae 

AJ233427, Serratia entomophila, Enterobacteriaceae 

AJ233428, Serratia ficaria, Enterobacteriaceae 

AF366383, Yersinia pestis, type sp., Enterobacteriaceae 

AF366375, Yersinia pseudotuberculosis, Enterobacteriaceae 

AM182404, Yersinia similis, Enterobacteriaceae 

AF366385, Yersinia ruckeri, Enterobacteriaceae 

AJ233407, Budvicia aquatica, type sp., Enterobacteriaceae 

EF179119, Yersinia massiliensis, Enterobacteriaceae 

AF366377, Yersinia bercovieri, Enterobacteriaceae 

AJ627597, Yersinia aleksiciae, Enterobacteriaceae 

AF366376, Yersinia aldovae, Enterobacteriaceae 

AF366382, Yersinia mollaretii, Enterobacteriaceae 

GQ451990, Yersinia pekkanenii, Enterobacteriaceae 

AF366384, Yersinia rohdei, Enterobacteriaceae 

AF366379, Yersinia frederiksenii, Enterobacteriaceae 

AF366381, Yersinia kristensenii, Enterobacteriaceae 

AF366380, Yersinia intermedia, Enterobacteriaceae 

FJ717338, Yersinia nurmii, Enterobacteriaceae 

DQ400782, Yersinia entomophaga, Enterobacteriaceae 

FR729477, Yersinia enterocolitica subsp. palearctica, Enterobacteriaceae 

AF366378, Yersinia enterocolitica subsp. enterocolitica, Enterobacteriaceae 

AJ233426, Rahnella aquatilis, type sp., Enterobacteriaceae 

M59155, Hafnia alvei, type sp., Enterobacteriaceae 

AJ233422, Obesumbacterium proteus, type sp., Enterobacteriaceae 

FM179943, Hafnia paralvei, Enterobacteriaceae 

AJ233429, Serratia fonticola, Enterobacteriaceae 

FJ790328, Serratia glossinae, Enterobacteriaceae 

AJ233434, Serratia proteamaculans, Enterobacteriaceae 

AJ233435, Serratia quinivorans, Enterobacteriaceae 

AJ233430, Serratia grimesii, Enterobacteriaceae 

AJ306725, Serratia liquefaciens, Enterobacteriaceae 

AJ233433, Serratia plymuthica, Enterobacteriaceae 

GU394001, Serratia symbiotica, Enterobacteriaceae 

Pasteurellaceae (73) 

AF228001, Gallibacterium anatis, type sp., Pasteurellaceae 

L06078, Gallibacterium salpingitidis, Pasteurellaceae 

EU423985, Gallibacterium melopsittaci, Pasteurellaceae 

EU339199, Gallibacterium trehalosifermentans, Pasteurellaceae 

AY216869, Volucribacter amazonae, Pasteurellaceae 

AY216868, Volucribacter psittacicida, type sp., Pasteurellaceae 

AY362921, Avibacterium gallinarum, type sp., Pasteurellaceae 

M75070, Avibacterium volantium, Pasteurellaceae 

AY498868, Avibacterium paragallinarum, Pasteurellaceae 

M75058, Avibacterium avium, Pasteurellaceae 

AF024525, Actinobacillus succinogenes, Pasteurellaceae 

AF549387, Histophilus somni, type sp., Pasteurellaceae 

AY362907, Haemophilus haemoglobinophilus, Pasteurellaceae 

AY362891, Actinobacillus indolicus, Pasteurellaceae 

AY362909, Haemophilus parasuis, Pasteurellaceae 

AY362886, Actinobacillus capsulatus, Pasteurellaceae 

M75061, Haemophilus paracuniculus, Pasteurellaceae 

AY362919, Pasteurella canis, Pasteurellaceae 

M75052, Pasteurella oralis, Pasteurellaceae 

AY362920, Pasteurella dagmatis, Pasteurellaceae 

AY362925, Pasteurella stomatis, Pasteurellaceae 

AF294412, Pasteurella multocida subsp. gallicida, Pasteurellaceae 

AF294410, Pasteurella multocida subsp. multocida, type sp., Pasteurellaceae 

AF294411, Pasteurella multocida subsp. septica, Pasteurellaceae 

AF224292, Haemophilus felis, Pasteurellaceae 

AY508816, Nicoletella semolina, type sp., Pasteurellaceae 

HM439607, Mannheimia caviae, Pasteurellaceae 

AF053893, Mannheimia varigena, Pasteurellaceae 

AF053902, Mannheimia granulomatis, Pasteurellaceae 

AF053889, Mannheimia glucosida, Pasteurellaceae 

M75080, Mannheimia haemolytica, type sp., Pasteurellaceae 

AF053900, Mannheimia ruminalis, Pasteurellaceae 

FJ463881, Basfia succiniciproducens, type sp., Pasteurellaceae 

AY362927, Bibersteinia trehalosi, type sp., Pasteurellaceae 

AY362917, Pasteurella bettyae, Pasteurellaceae 

AY362893, Actinobacillus minor, Pasteurellaceae 

M75076, Haemophilus paraphrohaemolyticus, Pasteurellaceae 

AY172727, Actinobacillus anseriformium, Pasteurellaceae 

AY362892, Actinobacillus lignieresii, type sp., Pasteurellaceae 

M75074, Actinobacillus pleuropneumoniae, Pasteurellaceae 

AY362900, Actinobacillus ureae, Pasteurellaceae 

AF247716, Actinobacillus equuli subsp. haemolyticus, Pasteurellaceae 

AF381186, Actinobacillus equuli subsp. equuli, Pasteurellaceae 

AY362890, Actinobacillus hominis, Pasteurellaceae 

AY362899, Actinobacillus suis, Pasteurellaceae 

L06084, Actinobacillus arthritidis, Pasteurellaceae 

AY362918, Pasteurella caballi, Pasteurellaceae 

AY362894, Actinobacillus muris, Pasteurellaceae 

GU966652, Necropsobacter rosorum, type sp., Pasteurellaceae 

AY362895, Actinobacillus rossii, Pasteurellaceae 

AY362922, Pasteurella langaaensis, Pasteurellaceae 

U65583, Actinobacillus porcinus, Pasteurellaceae 

Y17189, Lonepinella koalarum, type sp., Pasteurellaceae

AJ243202, Pasteurella skyensis, Pasteurellaceae 

X89379, Phocoenobacter uteri, type sp., Pasteurellaceae 

M63900, Haemophilus ducreyi, Pasteurellaceae 

AY362889, Actinobacillus delphinicola, Pasteurellaceae 

Y09653, Actinobacillus scotiae, Pasteurellaceae 

GU295084, Bisgaardia hudsonensis, type sp., Pasteurellaceae 

M75039, Aggregatibacter actinomycetemcomitans, type sp., Pasteurellaceae 

AY362906, Aggregatibacter aphrophilus, Pasteurellaceae 

M75043, Aggregatibacter segnis, Pasteurellaceae 

AY362897, Actinobacillus seminis, Pasteurellaceae 

AY362923, Pasteurella mairii, Pasteurellaceae 

U66491, Pasteurella aerogenes, Pasteurellaceae 

AJ290755, Haemophilus pittmaniae, Pasteurellaceae 

AY362924, Pasteurella pneumotropica, Pasteurellaceae 

AY362905, Haemophilus aegyptius, Pasteurellaceae 

M35019, Haemophilus influenzae, type sp., Pasteurellaceae 

AY362908, Haemophilus parainfluenzae, Pasteurellaceae 

JF506642, Haemophilus sputorum, Pasteurellaceae 

EU331064, Chelonobacter oris, type sp., Pasteurellaceae 

AY362926, Pasteurella testudinis, Pasteurellaceae 

FJ612598, Orbus hercynius, type sp., Unclassified Gammaproteobacteria 

AY837748, Thorsellia anophelis, type sp., Enterobacteriaceae 

AY264674, Arsenophonus nasoniae, type sp., Enterobacteriaceae 

AJ560630, Photorhabdus luminescens subsp. kayaii, Enterobacteriaceae 

AJ007404, Photorhabdus luminescens subsp. laumondii, Enterobacteriaceae 

HM072284, Photorhabdus luminescens subsp. kleinii, Enterobacteriaceae 

EU930342, Photorhabdus luminescens subsp. hainanensis, Enterobacteriaceae 

AJ007359, Photorhabdus luminescens subsp. akhurstii, Enterobacteriaceae 

EU930345, Photorhabdus luminescens subsp. caribbeanensis, Enterobacteriaceae 

AJ560634, Photorhabdus temperata subsp. thracensis, Enterobacteriaceae 

AY280572, Photorhabdus asymbiotica subsp. australis, Enterobacteriaceae 

EU136626, Photorhabdus temperata subsp. cinerea, Enterobacteriaceae 

AY278657, Photorhabdus temperata subsp. khanii, Enterobacteriaceae 

EF467859, Photorhabdus temperata subsp. stackebrandtii, Enterobacteriaceae 

AJ007405, Photorhabdus temperata subsp. temperata, Enterobacteriaceae 

EU930339, Photorhabdus temperata subsp. tasmaniensis, Enterobacteriaceae 

Z76755, Photorhabdus asymbiotica subsp. asymbiotica, Enterobacteriaceae 

X82248, Photorhabdus luminescens subsp. luminescens, type sp., Enterobacteriaceae 

AY278675, Xenorhabdus beddingii, Enterobacteriaceae 

D78010, Xenorhabdus poinarii, Enterobacteriaceae 

DQ211709, Xenorhabdus doucetiae, Enterobacteriaceae 

DQ211717, Xenorhabdus romanii, Enterobacteriaceae 

DQ211710, Xenorhabdus griffiniae, Enterobacteriaceae 

DQ211715, Xenorhabdus mauleonii, Enterobacteriaceae 

AY278674, Xenorhabdus nematophila, type sp., Enterobacteriaceae 

HQ877464, Xenorhabdus magdalenensis, Enterobacteriaceae 

AY521244, Xenorhabdus cabanillasii, Enterobacteriaceae 

AM040494, Xenorhabdus indica, Enterobacteriaceae 

DQ211713, Xenorhabdus miraniensis, Enterobacteriaceae 

AJ810295, Xenorhabdus szentirmaii, Enterobacteriaceae 

AY278673, Xenorhabdus bovienii, Enterobacteriaceae 

AJ810293, Xenorhabdus budapestensis, Enterobacteriaceae 

AJ810294, Xenorhabdus ehlersii, Enterobacteriaceae 

DQ211716, Xenorhabdus kozodoii, Enterobacteriaceae 

DQ205450, Xenorhabdus koppenhoeferi, Enterobacteriaceae 

D78008, Xenorhabdus japonica, Enterobacteriaceae 

DQ205447, Xenorhabdus vietnamensis, Enterobacteriaceae 

AJ810292, Xenorhabdus innexi, Enterobacteriaceae 

DQ202309, Xenorhabdus stockiae, Enterobacteriaceae 

DQ211719, Xenorhabdus hominickii, Enterobacteriaceae 

DQ885256, Proteus mirabilis, Enterobacteriaceae 

DQ885258, Proteus penneri, Enterobacteriaceae 

DQ885257, Proteus vulgaris, type sp., Enterobacteriaceae 

FR733709, Proteus hauseri, Enterobacteriaceae 

DQ885259, Cosenzaea myxofaciens, type sp., Enterobacteriaceae 

AJ301684, Providencia alcalifaciens, type sp., Enterobacteriaceae 

AM040489, Providencia rustigianii, Enterobacteriaceae 

HM038004, Providencia burhodogranariea, Enterobacteriaceae 

AM040490, Providencia heimbachae, Enterobacteriaceae 

AM040492, Providencia rettgeri, Enterobacteriaceae 

AM040495, Providencia vermicola, Enterobacteriaceae 

AF008581, Providencia stuartii, Enterobacteriaceae 

HM038003, Providencia sneebia, Enterobacteriaceae 

DQ358146, Morganella morganii subsp. sibonii, Enterobacteriaceae 

AJ301681, Morganella morganii subsp. morganii, type sp., Enterobacteriaceae 

DQ358135, Morganella psychrotolerans, Enterobacteriaceae 

AJ233421, Leminorella grimontii, type sp., Enterobacteriaceae 

AJ233424, Pragia fontium, type sp., Enterobacteriaceae 

AJ233416, Lonsdalea quercina subsp. quercina, Enterobacteriaceae 

U80210, Brenneria salicis, type sp., Enterobacteriaceae 

JF311441, Lonsdalea quercina subsp. iberica, Enterobacteriaceae 

JF311442, Lonsdalea quercina subsp. britannica, Enterobacteriaceae 

AM774412, Biostraticola tofi, type sp., Enterobacteriaceae 

M99060, Sodalis glossinidius, type sp., Enterobacteriaceae 

AJ233418, Brenneria rubrifaciens, Enterobacteriaceae 

AF520707, Dickeya dadantii, Enterobacteriaceae 

AF520708, Dickeya dianthicola, Enterobacteriaceae 

Z96096, Dickeya paradisiaca, Enterobacteriaceae 

AJ233412, Dickeya chrysanthemi, type sp., Enterobacteriaceae 

AF520712, Dickeya dadantii subsp. dieffenbachiae, Enterobacteriaceae 

AF520711, Dickeya zeae, Enterobacteriaceae 

U80203, Brenneria nigrifluens, Enterobacteriaceae 

AJ233409, Brenneria alni, Enterobacteriaceae 

AF273037, Samsonia erythrinae, type sp., Enterobacteriaceae 

AJ223407, Pectobacterium carotovorum subsp. odoriferum, Enterobacteriaceae 

AJ233411, Pectobacterium carotovorum subsp. carotovorum, type sp., Enterobacteriaceae 

AJ223409, Pectobacterium cacticida, Enterobacteriaceae 

U80199, Pectobacterium wasabiae, Enterobacteriaceae 

Z96090, Pectobacterium atrosepticum, Enterobacteriaceae 

U80198, Pectobacterium betavasculorum, Enterobacteriaceae 

X60418, Plesiomonas shigelloides, type sp., Enterobacteriaceae 

Aeromonadaceae and Succinivibrionaceae (42) 

FJ230076, Aeromonas sanarellii, Aeromonadaceae 

FJ230077, Aeromonas taiwanensis, Aeromonadaceae 

X71121, Aeromonas enteropelogenes, Aeromonadaceae 

X60408, Aeromonas punctata subsp. punctata, Aeromonadaceae 

AJ508765, Aeromonas hydrophila subsp. dhakensis, Aeromonadaceae 

EU085557, Aeromonas aquariorum, Aeromonadaceae 

X74674, Aeromonas punctata subsp. caviae, Aeromonadaceae 

AM262151, Aeromonas hydrophila subsp. ranae, Aeromonadaceae 

X60410, Aeromonas media, Aeromonadaceae 

DQ207728, Aeromonas hydrophila subsp. hydrophila, type sp., Aeromonadaceae

FR870443, Aeromonas hydrophila subsp. anaerogenes, Aeromonadaceae 

Succinivibrionaceae (6) 

U96412, Anaerobiospirillum succiniciproducens, type sp., Succinivibrionaceae 

Y17600, Succinivibrio dextrinosolvens, type sp., Succinivibrionaceae 

AJ420985, Anaerobiospirillum thomasii, Succinivibrionaceae 

AB490810, Succinatimonas hippei, type sp., Succinivibrionaceae 

Y17599, Succinimonas amylolytica, type sp., Succinivibrionaceae 

Y15992, Ruminobacter amylophilus, type sp., Succinivibrionaceae 

X92889, Tolumonas auensis, type sp., Aeromonadaceae 

GU370947, Tolumonas osonensis, Aeromonadaceae 

DQ013306, Aeromonas sharmana, Aeromonadaceae 

AJ009859, Aeromonas salmonicida subsp. smithia, Aeromonadaceae 

FM999971, Aeromonas piscicola, Aeromonadaceae 

AB027542, Aeromonas salmonicida subsp. masoucida, Aeromonadaceae 

X60407, Aeromonas salmonicida subsp. achromogenes, Aeromonadaceae 

X60406, Aeromonas bestiarum, Aeromonadaceae 

AY987751, Aeromonas salmonicida subsp. salmonicida, Aeromonadaceae 

AF134065, Aeromonas salmonicida subsp. pectinolytica, Aeromonadaceae 

AY532690, Aeromonas molluscorum, Aeromonadaceae 

FJ976900, Aeromonas rivuli, Aeromonadaceae 

AJ224309, Aeromonas encheleia, Aeromonadaceae 

AJ224308, Aeromonas popoffii, Aeromonadaceae 

X60412, Aeromonas sobria, Aeromonadaceae 

DQ504429, Aeromonas bivalvium, Aeromonadaceae 

X60411, Aeromonas eucrenophila, Aeromonadaceae 

AJ458402, Aeromonas tecta , Aeromonadaceae 

X71120, Aeromonas ichthiosmia, Aeromonadaceae 

X60414, Aeromonas veronii, Aeromonadaceae 

FJ230078, Aeromonas fluvialis, Aeromonadaceae 

X60413, Aeromonas jandaei, Aeromonadaceae 

X60416, Aeromonas schubertii, Aeromonadaceae 

GQ365710, Aeromonas diversa, Aeromonadaceae 

AJ536821, Aeromonas simiae, Aeromonadaceae 

Vibrionaceae (128) 

AJ293802, Vibrio pelagius, Vibrionaceae 

AJ514916, Vibrio fortis, Vibrionaceae 

X99761, Vibrio mytili, Vibrionaceae 

X99762, Vibrio diabolicus, Vibrionaceae 

AB428897, Vibrio azureus, Vibrionaceae 

AB428909, Vibrio sagamiensis, Vibrionaceae 

AF388386, Vibrio parahaemolyticus, Vibrionaceae 

X74714, Vibrio natriegens, Vibrionaceae 

GU078672, Vibrio communis, Vibrionaceae 

GU018180, Vibrio owensii, Vibrionaceae 

AB562589, Vibrio jasicida, Vibrionaceae 

AY750575, Vibrio harveyi, Vibrionaceae 

AJ316187, Vibrio rotiferianus, Vibrionaceae 

X56576, Vibrio alginolyticus, Vibrionaceae 

X56575, Vibrio campbellii, Vibrionaceae 

FJ009624, Vibrio atypicus, Vibrionaceae 

X74723, Vibrio proteolyticus, Vibrionaceae 

GQ397859, Vibrio xiamenensis, Vibrionaceae 

X74716, Vibrio nereis, Vibrionaceae 

GU929925, Vibrio maritimus, Vibrionaceae 

GU929924, Vibrio variabilis, Vibrionaceae 

X74717, Vibrio nigripulchritudo, Vibrionaceae 

DQ451211, Vibrio sinaloensis, Vibrionaceae 

AJ316172, Vibrio brasiliensis, Vibrionaceae 

GU223601, Vibrio caribbeanicus, Vibrionaceae 

AJ440005, Vibrio coralliilyticus, Vibrionaceae 

AJ316171, Vibrio neptunius, Vibrionaceae 

AJ345063, Vibrio hepatarius, Vibrionaceae 

X74725, Vibrio tubiashii, Vibrionaceae 

AJ316181, Vibrio xuii, Vibrionaceae 

EF032499, Vibrio albensis, Vibrionaceae 

X76337, Vibrio cholerae, type sp., Vibrionaceae 

X74713, Vibrio mimicus, Vibrionaceae 

EF488079, Vibrio porteresiae, Vibrionaceae 

DQ847123, Vibrio rhizosphaerae, Vibrionaceae 

AF462458, Vibrio ruber, Vibrionaceae 

EU144014, Vibrio mangrovi, Vibrionaceae 

X74705, Vibrio gazogenes, Vibrionaceae 

X76335, Vibrio fluvialis, Vibrionaceae 

X76336, Vibrio furnissii, Vibrionaceae 

EU143360, Vibrio areninigrae, Vibrionaceae 

AY254040, Vibrio hispanicus, Vibrionaceae 

X74701, Vibrio diazotrophicus, Vibrionaceae 

GQ352641, Vibrio plantisponsor, Vibrionaceae 

X74698, Vibrio cincinnatiensis, Vibrionaceae 

X74711, Vibrio metschnikovii, Vibrionaceae 

AM235737, Vibrio anguillarum, Vibrionaceae 

X74718, Vibrio ordalii, Vibrionaceae 

X74715, Vibrio navarrensis, Vibrionaceae 

X76333, Vibrio vulnificus, Vibrionaceae 

X74689, Vibrio aestuarianus, Vibrionaceae 

FJ968722, Vibrio casei, Vibrionaceae 

DQ097523, Vibrio litoralis, Vibrionaceae 

AB013297, Vibrio rumoiensis, Vibrionaceae 

FJ847833, Vibrio marisflavi, Vibrionaceae 

AJ421444, Vibrio penaeicida, Vibrionaceae 

Y08430, Vibrio tapetis, Vibrionaceae 

Y13830, Vibrio pectenicida, Vibrionaceae 

AM162657, Vibrio kanaloae, Vibrionaceae 

AJ515230, Vibrio splendidus, Vibrionaceae 

AM162656, Vibrio cyclitrophicus, Vibrionaceae 

EU541605, Vibrio gallaecicus, Vibrionaceae 

AJ278881, Vibrio lentus, Vibrionaceae 

AJ316192, Vibrio tasmaniensis, Vibrionaceae 

EF599163, Vibrio atlanticus, Vibrionaceae 

EF599164, Vibrio artabrorum, Vibrionaceae 

EF599162, Vibrio celticus, Vibrionaceae 

EF094888, Vibrio gigantis, Vibrionaceae 

AJ316199, Vibrio chagasii, Vibrionaceae 

EF094887, Vibrio crassostreae, Vibrionaceae 

AJ491290, Vibrio pomeroyi, Vibrionaceae 

AJ316194, Vibrio pacinii, Vibrionaceae 

X74710, Vibrio mediterranei, Vibrionaceae 

X74719, Vibrio orientalis, Vibrionaceae 

AJ630103, Vibrio ponticus, Vibrionaceae 

AJ437616, Aliivibrio logei, Vibrionaceae 

X70643, Aliivibrio salmonicida, Vibrionaceae

AB464964, Aliivibrio sifiae, Vibrionaceae 

AJ132227, Aliivibrio wodanis, Vibrionaceae 

EU541604, Aliivibrio finisterrensis, Vibrionaceae 

X74702, Aliivibrio fischeri, type sp., Vibrionaceae 

AY257972, Vibrio gallicus, Vibrionaceae 

AY155585, Vibrio superstes, Vibrionaceae 

DQ922915, Vibrio comitans, Vibrionaceae 

DQ922920, Vibrio inusitatus, Vibrionaceae 

DQ914239, Vibrio rarus, Vibrionaceae 

EF599161, Vibrio breoganii, Vibrionaceae 

AY426980, Vibrio ezurae, Vibrionaceae 

AY426979, Vibrio neonatus, Vibrionaceae 

AB000390, Vibrio halioticoli, Vibrionaceae 

AJ310647, Vibrio agarivorans, Vibrionaceae 

EU082035, Vibrio hangzhouensis, Vibrionaceae 

AJ421445, Vibrio ichthyoenteri, Vibrionaceae 

U46579, Vibrio scophthalmi, Vibrionaceae 

FN421434, Vibrio hippocampi, Vibrionaceae 

GQ281380, Vibrio stylophorae, Vibrionaceae 

X74699, Salinivibrio costicola subsp. costicola, type sp., Vibrionaceae 

AJ640132, Salinivibrio costicola subsp. alcaliphilus, Vibrionaceae 

AM279734, Salinivibrio sharmensis, Vibrionaceae 

AB285018, Salinivibrio siamensis, Vibrionaceae 

AF057016, Salinivibrio costicola subsp. vallismortis, Vibrionaceae 

DQ092443, Salinivibrio proteolyticus, Vibrionaceae 

AF118021, Enterovibrio calviensis, Vibrionaceae 

AM942722, Enterovibrio nigricans, Vibrionaceae 

AJ842343, Enterovibrio coralii, Vibrionaceae 

AJ514909, Grimontia hollisae, type sp., Vibrionaceae 

AJ316208, Enterovibrio norvegicus, type sp., Vibrionaceae 

AY551089, Photobacterium halotolerans, Vibrionaceae 

FN796493, Photobacterium aphoticum, Vibrionaceae 

AY960847, Photobacterium ganghwense, Vibrionaceae 

D25307, Photobacterium angustum, Vibrionaceae 

D25310, Photobacterium phosphoreum, type sp., Vibrionaceae 

AB428873, Photobacterium aquimaris, Vibrionaceae 

AY643710, Photobacterium iliopiscarium, Vibrionaceae 

AY341439, Photobacterium kishitanii, Vibrionaceae 

AY781193, Photobacterium aplysiae, Vibrionaceae 

AY554009, Photobacterium lipolyticum, Vibrionaceae 

D21226, Photobacterium profundum, Vibrionaceae 

AB016982, Photobacterium indicum, Vibrionaceae 

AY538749, Photobacterium frigidiphilum, Vibrionaceae 

GQ386822, Photobacterium swingsii, Vibrionaceae 

GU065210, Photobacterium jeanii, Vibrionaceae 

DQ534014, Photobacterium lutimaris, Vibrionaceae 

AJ842344, Photobacterium rosenbergii, Vibrionaceae 

GQ260188, Photobacterium gaetbulicola, Vibrionaceae 

X78105, Photobacterium damselae subsp. piscicida, Vibrionaceae 

AB032015, Photobacterium damselae subsp. damselae, Vibrionaceae 

X74686, Photobacterium leiognathi, Vibrionaceae 

AF168367, Oceanimonas baumannii, Aeromonadaceae 

AY538714, Oceanimonas smirnovii, Aeromonadaceae 

AB019390, Oceanimonas doudoroffii, type sp., Aeromonadaceae 

DQ195675, Zobellella denitrificans, type sp., Aeromonadaceae 

HM475140, Zobellella aerophila, Aeromonadaceae 

DQ195676, Zobellella taiwanensis, Aeromonadaceae 

DQ190441, Oceanisphaera donghaensis, Aeromonadaceae 

HQ171441, Oceanisphaera sediminis, Aeromonadaceae 

FN377705, Oceanisphaera arctica, Aeromonadaceae 

AJ550470, Oceanisphaera litoralis, type sp., Aeromonadaceae 

HQ340607, Oceanisphaera ostreae, Aeromonadaceae 

FM955224, Gallaecimonas pentaromativorans, type sp., Unclassified Gammaproteobacteria 

Colwelliaceae (17) 

U85846, Colwellia psychrotropica, Colwelliaceae 

U14581, Colwellia rossensis, Colwelliaceae 

AB002630, Colwellia maris, Colwelliaceae 

AB094412, Colwellia piezophila, Colwelliaceae 

AB011364, Colwellia psychrerythraea, type sp., Colwelliaceae 

DQ055844, Colwellia aestuarii, Colwelliaceae 

FJ889599, Colwellia chukchiensis, Colwelliaceae 

DQ007434, Colwellia polaris, Colwelliaceae 

EU599214, Colwellia asteriadis, Colwelliaceae 

U85845, Colwellia demingiae, Colwelliaceae 

AB369380, Thalassomonas actiniarum, Colwelliaceae 

AJ294747, Thalassomonas viridans, type sp., Colwelliaceae 

AB369381, Thalassomonas haliotis, Colwelliaceae 

AY194066, Thalassomonas ganghwensis, Colwelliaceae 

DQ212914, Thalassomonas agarivorans, Colwelliaceae 

AY643537, Thalassomonas loyana, Colwelliaceae 

HM237288, Thalassomonas agariperforans, Colwelliaceae 

AB076561, Agarivorans albus, type sp., Alteromonadaceae 

GQ200591, Agarivorans gilvus, Alteromonadaceae 

FJ167390, Aliagarivorans marinus, type sp., Alteromonadaceae 

FJ167391, Aliagarivorans taiwanensis, Alteromonadaceae 

DQ913890, Celerinatantimonas diazotrophica, type sp., Celerinatantimonadaceae 

Idiomarinaceae (21) 

EU723884, Idiomarina maris, Idiomarinaceae 

HQ537484, Aliidiomarina taiwanensis, type sp., Idiomarinaceae 

GU471247, Idiomarina xiamenensis, Idiomarinaceae 

FJ768737, Idiomarina aestuarii, Idiomarinaceae 

EF212001, Idiomarina sediminum, Idiomarinaceae 

DQ118948, Idiomarina taiwanensis, Idiomarinaceae 

EF486355, Pseudidiomarina salinarum, Idiomarinaceae 

EU600204, Idiomarina donghaiensis, Idiomarinaceae 

EU423908, Idiomarina marina, Idiomarinaceae 

EU423907, Idiomarina tainanensis, Idiomarinaceae 

EU600203, Idiomarina maritima, Idiomarinaceae 

DQ342238, Pseudidiomarina homiensis, Idiomarinaceae 

FJ906745, Idiomarina aquimaris, Idiomarinaceae 

FM877003, Idiomarina insulisalsae, Idiomarinaceae 

AJ440214, Idiomarina baltica, Idiomarinaceae 

AY526861, Idiomarina fontislapidosi, Idiomarinaceae 

AY635468, Idiomarina seosinensis, Idiomarinaceae 

AF052741, Idiomarina zobellii, Idiomarinaceae 

AF288370, Idiomarina loihiensis, Idiomarinaceae 

AY526862, Idiomarina ramblicola, Idiomarinaceae 

AF052740, Idiomarina abyssalis, type sp., Idiomarinaceae 

Psychromonadaceae (14) 

AB374544, Psychromonas agarivorans, Psychromonadaceae

AB365352, Psychromonas heitensis, Psychromonadaceae 

AB094413, Psychromonas hadalis, Psychromonadaceae 

AJ416756, Psychromonas profunda, Psychromonadaceae 

AB052160, Psychromonas kaikoae, Psychromonadaceae 

AB023378, Psychromonas marina, Psychromonadaceae 

AF374385, Psychromonas arctica, Psychromonadaceae 

AB304805, Psychromonas aquimarina, Psychromonadaceae 

AB304806, Psychromonas macrocephali, Psychromonadaceae 

AB304808, Psychromonas ossibalaenae, Psychromonadaceae 

AB304804, Psychromonas japonica, Psychromonadaceae 

FJ822615, Psychromonas boydii, Psychromonadaceae 

U73721, Psychromonas ingrahamii, Psychromonadaceae 

Y14697, Psychromonas antarctica, type sp., Psychromonadaceae 

Pseudoalteromonadaceae (37) 

X98336, Pseudoalteromonas antarctica, Pseudoalteromonadaceae 

AY040230, Pseudoalteromonas translucida, Pseudoalteromonadaceae 

AY387858, Pseudoalteromonas aliena, Pseudoalteromonadaceae 

AY563031, Pseudoalteromonas marina, Pseudoalteromonadaceae 

X82140, Pseudoalteromonas undina, Pseudoalteromonadaceae 

X67024, Pseudoalteromonas haloplanktis, type sp., Pseudoalteromonadaceae 

X82146, Pseudoalteromonas nigrifaciens, Pseudoalteromonadaceae 

DQ787199, Pseudoalteromonas arctica, Pseudoalteromonadaceae 

AF082562, Pseudoalteromonas elyakovii, Pseudoalteromonadaceae 

AY040229, Pseudoalteromonas paragorgicola, Pseudoalteromonadaceae 

AF082564, Pseudoalteromonas distincta, Pseudoalteromonadaceae 

AJ417594, Pseudoalteromonas agarivorans, Pseudoalteromonadaceae 

X82134, Pseudoalteromonas atlantica, Pseudoalteromonadaceae 

X82143, Pseudoalteromonas espejiana, Pseudoalteromonadaceae 

X82136, Pseudoalteromonas carrageenovora, Pseudoalteromonadaceae 

AF316144, Pseudoalteromonas issachenkonii, Pseudoalteromonadaceae 

AF214730, Pseudoalteromonas tetraodonis, Pseudoalteromonadaceae 

AJ507251, Pseudoalteromonas mariniglutinosa, Pseudoalteromonadaceae 

U85855, Pseudoalteromonas prydzensis, Pseudoalteromonadaceae 

FJ754319, Pseudoalteromonas donghaensis, Pseudoalteromonadaceae 

FJ404721, Pseudoalteromonas lipolytica, Pseudoalteromonadaceae 

AF297958, Pseudoalteromonas flavipulchra, Pseudoalteromonadaceae 

AF144036, Pseudoalteromonas maricaloris, Pseudoalteromonadaceae 

Z25522, Pseudoalteromonas tunicata , Pseudoalteromonadaceae 

AF172987, Pseudoalteromonas ulvae, Pseudoalteromonadaceae 

AB090232, Pseudoalteromonas piscicida, Pseudoalteromonadaceae 

AF007286, Pseudoalteromonas peptidolytica, Pseudoalteromonadaceae 

X82147, Pseudoalteromonas rubra, Pseudoalteromonadaceae 

X82135, Pseudoalteromonas aurantia, Pseudoalteromonadaceae 

X82137, Pseudoalteromonas citrea, Pseudoalteromonadaceae 

X82138, Pseudoalteromonas denitrificans, Pseudoalteromonadaceae 

AF332880, Pseudoalteromonas phenolica, Pseudoalteromonadaceae 

AY769918, Pseudoalteromonas spongiae, Pseudoalteromonadaceae 

X82144, Pseudoalteromonas luteoviolacea, Pseudoalteromonadaceae 

DQ011289, Pseudoalteromonas byunsanensis, Pseudoalteromonadaceae 

AF316891, Pseudoalteromonas ruthenica, Pseudoalteromonadaceae 

AB545807, Psychrosphaera saromensis, type sp., Pseudoalteromonadaceae 

Moritellaceae (8) 

AJ252022, Moritella abyssi, Moritellaceae 

EF192283, Moritella dasanensis, Moritellaceae 

AJ252023, Moritella profunda, Moritellaceae 

AJ132226, Moritella viscosa, Moritellaceae 

AB008797, Moritella yayanosii, Moritellaceae 

D21224, Moritella japonica, Moritellaceae 

AB038033, Moritella marina, type sp., Moritellaceae 

AB364966, Paramoritella alkaliphila, type sp., Moritellaceae 

Shewanellaceae (59) 

AY579751, Shewanella halifaxensis, Shewanellaceae 

CP000851, Shewanella pealeana, Shewanellaceae 

AB081757, Shewanella marinintestina, Shewanellaceae 

AB081762, Shewanella sairae, Shewanellaceae 

AB204519, Shewanella pneumatophori, Shewanellaceae 

AF420312, Shewanella fidelis, Shewanellaceae 

AB081760, Shewanella schlegeliana, Shewanellaceae 

AB094598, Shewanella kaireitica, Shewanellaceae 

AJ551089, Shewanella psychrophila, Shewanellaceae 

AJ551090, Shewanella piezotolerans, Shewanellaceae 

D21225, Shewanella violacea, Shewanellaceae 

X82131, Shewanella benthica, Shewanellaceae 

AB201475, Shewanella abyssi, Shewanellaceae 

U85907, Shewanella gelidimarina, Shewanellaceae 

AB094597, Shewanella surugensis, Shewanellaceae 

AY579749, Shewanella canadensis, Shewanellaceae 

FR733715, Shewanella sediminis, Shewanellaceae 

CP000821, Shewanella sediminis, Shewanellaceae 

X82132, Shewanella hanedai, Shewanellaceae 

CP000961, Shewanella woodyi, Shewanellaceae 

AY579752, Shewanella atlantica, Shewanellaceae 

AY485225, Shewanella aquimarina, Shewanellaceae 

DQ286387, Shewanella loihica, Shewanellaceae 

AY485224, Shewanella marisflavi, Shewanellaceae 

AB205570, Shewanella algidipiscicola, Shewanellaceae 

AY653177, Shewanella colwelliana, Shewanellaceae 

AY170366, Shewanella waksmanii, Shewanellaceae 

AF005249, Shewanella algae, Shewanellaceae 

GQ260190, Shewanella upenei, Shewanellaceae 

HM016084, Shewanella indica, Shewanellaceae 

FM203122, Shewanella fodinae, Shewanellaceae 

GQ245918, Shewanella dokdonensis, Shewanellaceae 

FM210033, Shewanella chilikensis, Shewanellaceae 

EF178282, Shewanella haliotis, Shewanellaceae 

FJ041083, Shewanella corallii, Shewanellaceae 

AF005248, Shewanella amazonensis, Shewanellaceae 

EU290154, Shewanella marina, Shewanellaceae 

AY326275, Shewanella donghaensis, Shewanellaceae 

AF295592, Shewanella olleyana, Shewanellaceae 

AF500075, Shewanella pacifica, Shewanellaceae 

AF145921, Shewanella japonica, Shewanellaceae 

AB205571, Shewanella glacialipiscicola, Shewanellaceae 

AB205576, Shewanella morhuae, Shewanellaceae 

AJ000214, Shewanella baltica, Shewanellaceae 

AF005251, Shewanella oneidensis, Shewanellaceae 

FR733713, Shewanella profunda, Shewanellaceae 

X81623, Shewanella putrefaciens, type sp., Shewanellaceae 

FJ589031, Shewanella xiamenensis, Shewanellaceae 

AJ609571, Shewanella decolorationis, Shewanellaceae

AB205566, Shewanella hafniensis, Shewanellaceae 

AJ300834, Shewanella livingstonensis, Shewanellaceae 

AM980877, Shewanella vesiculosa, Shewanellaceae 

U85903, Shewanella frigidimarina, Shewanellaceae 

GU564402, Shewanella arctica, Shewanellaceae 

EU143361, Shewanella basaltis, Shewanellaceae 

AJ311964, Shewanella denitrificans, Shewanellaceae 

AY190533, Shewanella gaetbuli, Shewanellaceae 

DQ180743, Shewanella irciniae, Shewanellaceae 

DQ167234, Shewanella spongiae, Shewanellaceae 

AB252732, Paraferrimonas sedimenticola, type sp., Ferrimonadaceae 

Ferrimonadaceae (5) 

X93021, Ferrimonas balearica, type sp., Ferrimonadaceae 

AB193751, Ferrimonas marina, Ferrimonadaceae 

DQ778094, Ferrimonas senticii, Ferrimonadaceae 

AB245515, Ferrimonas futtsuensis, Ferrimonadaceae 

AB245514, Ferrimonas kyonanensis, Ferrimonadaceae 

D89929, Algicola bacteriolytica, type sp., Pseudoalteromonadaceae 

AB063324, Algicola sagamiensis, Pseudoalteromonadaceae 

GQ168584, Rheinheimera aquatica, Chromatiaceae 

AY701891, Rheinheimera texasensis, Chromatiaceae 

DQ874340, Rheinheimera tangshanensis, Chromatiaceae 

EF575565, Rheinheimera soli, Chromatiaceae 

DQ298025, Rheinheimera chironomi, Chromatiaceae 

EF076757, Rheinheimera aquimaris, Chromatiaceae 

AJ441080, Rheinheimera baltica, type sp., Chromatiaceae 

FJ169968, Rheinheimera nanhaiensis, Chromatiaceae 

AB073132, Rheinheimera pacifica, Chromatiaceae 

EF660759, Alishewanella aestuarii, Alteromonadaceae 

EU817498, Alishewanella jeotgali, Alteromonadaceae 

AF144407, Alishewanella fetalis, type sp., Alteromonadaceae 

EU909459, Alishewanella agri, Alteromonadaceae 

GQ505294, Alishewanella tabrizica, Alteromonadaceae 

AM183347, Rheinheimera perlucida, Chromatiaceae 

AF250323, Alkalimonas amylolytica, type sp., Unclassified Gammaproteobacteria 

X92130, Alkalimonas delamerensis, Unclassified Gammaproteobacteria 

AB270706, Alkalimonas collagenimarina, Unclassified Gammaproteobacteria 

GQ262000, Catenovulum agarivorans, type sp., Alteromonadaceae 

Alteromonadaceae (26) 

Y18228, Alteromonas macleodii, type sp., Alteromonadaceae 

DQ836766, Alteromonas simiduii, Alteromonadaceae 

AF529060, Alteromonas marina, Alteromonadaceae 

DQ836765, Alteromonas tagae, Alteromonadaceae 

AY428573, Alteromonas litorea, Alteromonadaceae 

AY682202, Alteromonas addita, Alteromonadaceae 

AJ295715, Alteromonas stellipolaris, Alteromonadaceae 

AM885866, Alteromonas genovensis, Alteromonadaceae 

AY926460, Alteromonas hispanica, Alteromonadaceae 

DQ343294, Bowmanella denitrificans, type sp., Alteromonadaceae 

EU440951, Bowmanella pacifica, Alteromonadaceae 

AY553295, Salinimonas chungwhensis, type sp., Alteromonadaceae 

FJ847832, Aestuariibacter aggregatus, Alteromonadaceae 

AY207503, Aestuariibacter halophilus, Alteromonadaceae 

AY207502, Aestuariibacter salexigens, type sp., Alteromonadaceae 

AB473549, Aestuariibacter litoralis, Alteromonadaceae 

EU183316, Glaciecola lipolytica, Alteromonadaceae 

AY787042, Glaciecola nitratireducens, Alteromonadaceae 

U85854, Glaciecola pallidula, Alteromonadaceae 

DQ784575, Glaciecola agarilytica, Alteromonadaceae 

AB247623, Glaciecola chathamensis, Alteromonadaceae 

AJ293820, Glaciecola polaris, Alteromonadaceae 

AJ488501, Glaciecola mesophila, Alteromonadaceae 

DQ007436, Glaciecola psychrophila, Alteromonadaceae 

EU365479, Glaciecola arctica, Alteromonadaceae 

U85853, Glaciecola punicea, type sp., Alteromonadaceae 

JF330773, Methylophaga lonarensis, Piscirickettsiaceae 

AY694421, Methylophaga muralis, Piscirickettsiaceae 

AF384373, Methylophaga alcalica, Piscirickettsiaceae 

DQ660915, Methylophaga thiooxydans, Piscirickettsiaceae 

X95461, Methylophaga sulfidovorans, Piscirickettsiaceae 

DQ463161, Methylophaga aminisulfidivorans, Piscirickettsiaceae 

X95460, Methylophaga thalassica, Piscirickettsiaceae 

X95459, Methylophaga marina, type sp., Piscirickettsiaceae 

L34955, Cycloclasticus pugetii, type sp., Piscirickettsiaceae 

EF495157, Methylomicrobium alcaliphilum, Methylococcaceae 

AF307138, Methylomicrobium buryatense, Methylococcaceae 

D89279, Methylomicrobium japanense, Methylococcaceae 

AJ132384, Methylomicrobium kenyense, Methylococcaceae 

X72775, Methylomicrobium pelagicum, Methylococcaceae 

X72767, Methylomicrobium agile, type sp., Methylococcaceae 

X72777, Methylomicrobium album, Methylococcaceae 

X72773, Methylobacter whittenburyi, Methylococcaceae 

HQ676599, Methylococcus mobilis, Methylococcaceae 

AF177297, Methylosarcina quisquiliarum, Methylococcaceae 

AF177296, Methylosarcina fibrata, type sp., Methylococcaceae 

AY007296, Methylosarcina lacus, Methylococcaceae 

AF304195, Methylobacter luteus, type sp., Methylococcaceae 

AF304197, Methylobacter marinus, Methylococcaceae 

X72776, Methylomonas aurantiaca, Methylococcaceae 

X72778, Methylomonas fodinarum, Methylococcaceae 

AB538964, Methylomonas koyamae, Methylococcaceae 

AJ131369, Methylomonas scandinavica, Methylococcaceae 

AF304196, Methylomonas methanica, type sp., Methylococcaceae 

AF152597, Methylobacter psychrophilus, Methylococcaceae 

AJ414655, Methylobacter tundripaludum, Methylococcaceae 

DQ119050, Methylosoma difficile, type sp., Methylococcaceae 

AB501287, Methylovulum miyakonense, type sp., Methylococcaceae 

U67929, Methylosphaera hansonii, type sp., Methylococcaceae 

AJ404731, Thiomicrospira arctica, Piscirickettsiaceae 

AJ404732, Thiomicrospira psychrophila, Piscirickettsiaceae 

AF013975, Thiomicrospira chilensis, Piscirickettsiaceae 

AF013974, Thiomicrospira frisia, Piscirickettsiaceae 

L40810, Thiomicrospira crunogena, Piscirickettsiaceae 

AB166731, Thiomicrospira thermophila, Piscirickettsiaceae 

DQ390450, Thiomicrospira halophila, Piscirickettsiaceae 

D86374, Hydrogenovibrio marinus, type sp., Piscirickettsiaceae 

AF013978, Thiomicrospira kuenenii, Piscirickettsiaceae 

AF126548, Thioalkalimicrobium aerophilum, type sp., Piscirickettsiaceae 

AF126549, Thioalkalimicrobium sibiricum, Piscirickettsiaceae 

AF329082, Thioalkalimicrobium cyclicum, Piscirickettsiaceae 

DQ900623, Thioalkalimicrobium microaerophilum, Piscirickettsiaceae

L40809, Thiomicrospira pelophila, type sp., Piscirickettsiaceae 

AF016046, Thiomicrospira thyasirae, Piscirickettsiaceae 

AB495251, Cocleimonas flava, type sp., Thiotrichaceae 

X87277, Leucothrix mucor, type sp., Thiotrichaceae 

AF432145, Sedimenticola selenatireducens, type sp., Unclassified Gammaproteobacteria 

Halomonadaceae (94) 

AF212202, Halomonas neptunia, Halomonadaceae 

FN433898, Halomonas titanicae, Halomonadaceae 

AJ564880, Halomonas alkaliantarctica, Halomonadaceae 

AY245449, Halomonas boliviensis, Halomonadaceae 

AJ306893, Halomonas variabilis, Halomonadaceae 

FJ429198, Halomonas zhanjiangensis, Halomonadaceae 

AF212204, Halomonas sulfidaeris, Halomonadaceae 

AM229315, Halomonas janggokensis, Halomonadaceae 

EF144148, Halomonas subterranea, Halomonadaceae 

EF144147, Halomonas arcis, Halomonadaceae 

AM229314, Halomonas gomseomensis, Halomonadaceae 

EU557315, Halomonas vilamensis, Halomonadaceae 

AM941388, Halomonas stevensii, Halomonadaceae 

AM941396, Halomonas hamiltonii, Halomonadaceae 

X92150, Halomonas magadiensis, Halomonadaceae 

AM941399, Halomonas johnsoniae, Halomonadaceae 

AJ306888, Halomonas aquamarina, Halomonadaceae 

AJ306891, Halomonas meridiana, Halomonadaceae 

AF212206, Halomonas axialensis, Halomonadaceae 

AJ640133, Halomonas alkaliphila, Halomonadaceae 

AJ306894, Halomonas venusta, Halomonadaceae 

AF212218, Halomonas hydrothermalis, Halomonadaceae 

EF622233, Halomonas andesensis, Halomonadaceae 

L42619, Halomonas halodurans, Halomonadaceae 

EU909458, Halomonas jeotgali, Halomonadaceae 

AJ306892, Halomonas subglaciescola, Halomonadaceae 

AJ417388, Halomonas halocynthiae, Halomonadaceae 

EU541349, Halomonas fontilapidosi, Halomonadaceae 

EF613112, Halomonas cerina, Halomonadaceae 

AB021386, Chromohalobacter beijerinckii, Halomonadaceae 

AB105159, Chromohalobacter japonicus, Halomonadaceae 

AJ295143, Chromohalobacter canadensis, Halomonadaceae 

AY373448, Chromohalobacter sarecensis, Halomonadaceae 

AJ277205, Chromohalobacter nigrandesensis, Halomonadaceae 

X87219, Chromohalobacter marismortui, type sp., Halomonadaceae 

AJ295144, Chromohalobacter israelensis, Halomonadaceae 

CP000285, Chromohalobacter salexigens , Halomonadaceae 

DQ280368, Halomonas kribbensis, Halomonadaceae 

HM026177, Halomonas rifensis, Halomonadaceae 

EF674852, Halomonas lutea, Halomonadaceae 

EF421176, Halomonas xianhensis, Halomonadaceae 

AJ320530, Halomonas muralis, Halomonadaceae 

EU218533, Halomonas ilicicola, Halomonadaceae 

X93493, Halomonas pantelleriensis, Halomonadaceae 

EU085033, Halomonas korlensis, Halomonadaceae 

FJ984862, Halomonas daqiaonensis, Halomonadaceae 

DQ421808, Halomonas gudaonensis, Halomonadaceae 

FJ418176, Aidingimonas halophila, type sp., Halomonadaceae 

DQ641495, Modicisalibacter tunisiensis, type sp., Halomonadaceae 

EF121854, Halomonas daqingensis, Halomonadaceae 

X92417, Halomonas desiderata, Halomonadaceae 

AY962237, Halomonas kenyensis, Halomonadaceae 

AF054286, Halomonas campisalis, Halomonadaceae 

AJ515365, Halomonas campaniensis, Halomonadaceae 

AY962236, Halomonas mongoliensis, Halomonadaceae 

EF121853, Halomonas shengliensis, Halomonadaceae 

AF211860, Halomonas alimentaria, Halomonadaceae 

L04942, Halomonas halodenitrificans, Halomonadaceae 

AY268080, Halomonas ventosae, Halomonadaceae 

EF527874, Halomonas caseinilytica, Halomonadaceae 

AM238662, Halomonas sinaiensis, Halomonadaceae 

X67023, Halomonas elongata, type sp., Halomonadaceae 

X87218, Halomonas eurihalina, Halomonadaceae 

AJ306889, Halomonas halmophila, Halomonadaceae 

EF442769, Halomonas sabkhae, Halomonadaceae 

AY858696, Halomonas almeriensis, Halomonadaceae 

L42615, Halomonas cupida, Halomonadaceae 

AM229317, Halomonas denitrificans, Halomonadaceae 

EF144149, Halomonas saccharevitans, Halomonadaceae 

AJ271864, Halomonas maura, Halomonadaceae 

EF613113, Halomonas nitroreducens, Halomonadaceae 

HM242216, Halomonas stenophila, Halomonadaceae 

AM941744, Halomonas halophila, Halomonadaceae 

AJ295145, Halomonas salina, Halomonadaceae 

AJ616910, Halomonas organivorans, Halomonadaceae 

AY382579, Halomonas koreensis, Halomonadaceae 

L42616, Halomonas pacifica, Halomonadaceae 

EF527873, Halomonas salifodinae, Halomonadaceae 

AJ427626, Salinicola halophilus, Halomonadaceae 

AM229316, Salinicola salarius, Halomonadaceae 

DQ979342, Salinicola socius, type sp., Halomonadaceae 

AY489405, Halomonas anticariensis, Halomonadaceae 

EU822512, Halomonas xinjiangensis, Halomonadaceae 

AY671975, Halomonas taeanensis, Halomonadaceae 

AM941746, Kushneria aurantia, type sp., Halomonadaceae 

FJ667549, Kushneria sinocarnis, Halomonadaceae 

DQ888315, Kushneria avicenniae, Halomonadaceae 

AF251143, Kushneria marisflavi, Halomonadaceae 

AJ427627, Kushneria indalinina, Halomonadaceae 

AJ306890, Cobetia marina, type sp., Halomonadaceae 

EU909460, Cobetia crustatorum , Halomonadaceae 

DQ421388, Halotalea alkalilenta, type sp., Halomonadaceae 

AF211871, Zymobacter palmae, type sp., Halomonadaceae 

Y13299, Carnimonas nigrificans, type sp., Halomonadaceae 

AB098510, Marinospirillum insulare, Oceanospirillaceae 

AB006770, Marinospirillum megaterium, Oceanospirillaceae 

AB006769, Marinospirillum minutulum, type sp., Oceanospirillaceae 

AF275713, Marinospirillum alkaliphilum, Oceanospirillaceae 

EU375807, Marinospirillum celere, Oceanospirillaceae 

AB006766, Pseudospirillum japonicum, type sp., Oceanospirillaceae 

DQ403810, Reinekea blandensis, Oceanospirillaceae 

GQ456131, Reinekea aestuarii, Oceanospirillaceae 

AJ561121, Reinekea marinisedimentorum, type sp., Oceanospirillaceae 

Saccharospirillaceae (3) 

EF177670, Saccharospirillum salsuginis, Saccharospirillaceae 

GQ250189, Saccharospirillum aestuarii, Saccharospirillaceae

AJ315983, Saccharospirillum impatiens, type sp., Saccharospirillaceae 

Litoricolaceae (2) 

EF176580, Litoricola lipolytica, type sp., Litoricolaceae 

FJ943234, Litoricola marina, Litoricolaceae 

Oceanospirillaceae (38) 

DQ492749, Marinomonas arctica, Oceanospirillaceae 

AJ833000, Marinomonas polaris, Oceanospirillaceae 

AB074193, Marinomonas primoryensis, Oceanospirillaceae 

AJ627909, Marinomonas ushuaiensis, Oceanospirillaceae 

EU188444, Marinomonas foliarum, Oceanospirillaceae 

AY539835, Marinomonas pontica, Oceanospirillaceae 

EU188442, Marinomonas alcarazii, Oceanospirillaceae 

EU188443, Marinomonas rhizomae, Oceanospirillaceae 

EU188447, Marinomonas aquiplantarum, Oceanospirillaceae 

EU188445, Marinomonas posidonica, Oceanospirillaceae 

DQ011526, Marinomonas dokdonensis, Oceanospirillaceae 

AB467281, Marinomonas arenicola, Oceanospirillaceae 

EU188441, Marinomonas pollencensis, Oceanospirillaceae 

DQ011528, Marinomonas communis, type sp., Oceanospirillaceae 

AB242868, Marinomonas ostreistagni, Oceanospirillaceae 

AJ843077, Marinomonas aquimarina, Oceanospirillaceae 

X67025, Marinomonas vaga, Oceanospirillaceae 

GU929940, Marinomonas brasilensis, Oceanospirillaceae 

AF063027, Marinomonas mediterranea, Oceanospirillaceae 

EU188448, Marinomonas balearica, Oceanospirillaceae 

AM747817, Oceaniserpentilla haliotis, Oceanospirillaceae 

AM117931, Spongiispira norvegica, type sp., Unclassified Oceanospirillales 

AY136131, Bermanella marisrubri, Oceanospirillaceae 

AJ426420, Oleispira antarctica, type sp., Oceanospirillaceae 

AB006767, Oceanobacter kriegii, type sp., Oceanospirillaceae 

AB435649, Oleibacter marinus, type sp., Oceanospirillaceae 

AJ431699, Thalassolituus oleivorans, type sp., Oceanospirillaceae 

AB288092, Neptunomonas japonica, Oceanospirillaceae 

AF053734, Neptunomonas naphthovorans, type sp., Oceanospirillaceae 

FJ713802, Neptunomonas antarctica, Oceanospirillaceae 

AB006760, Oceanospirillum beijerinckii, Oceanospirillaceae 

AB006763, Oceanospirillum maris, Oceanospirillaceae 

AB006764, Oceanospirillum multiglobuliferum, Oceanospirillaceae 

AM156910, Amphritea atlantica, type sp., Oceanospirillaceae 

AB330883, Amphritea balenae, Oceanospirillaceae 

AB330881, Amphritea japonica, Oceanospirillaceae 

AY136116, Neptuniibacter caesariensis, type sp., Oceanospirillaceae 

GQ131677, Neptuniibacter halophilus, Oceanospirillaceae 

U58339, Marinobacterium georgiense, type sp., Alteromonadaceae 

AY563030, Marinobacterium halophilum, Alteromonadaceae 

EU399548, Marinobacterium maritimum, Alteromonadaceae 

AB021367, Marinobacterium stanieri, Alteromonadaceae 

EU573966, Marinobacterium sediminicola, Alteromonadaceae 

GU183820, Marinobacterium coralli, Alteromonadaceae 

AB006765, Marinobacterium jannaschii, Alteromonadaceae 

EF192391, Marinobacterium rhizophilum, Alteromonadaceae 

AY567473, Nitrincola lacisaponensis, type sp., Oceanospirillaceae 

DQ917760, Marinobacterium litorale, Alteromonadaceae 

FJ230839, Marinobacterium lutimaris, Alteromonadaceae 

EU573965, Marinobacterium nitratireducens, Alteromonadaceae 

Y17112, Balneatrix alpica, type sp., Oceanospirillaceae 

AJ295154, Oleiphilus messinensis, type sp., Oleiphilaceae 

DQ060402, Marinobacter psychrophilus, Alteromonadaceae 

FJ196022, Marinobacter antarcticus, Alteromonadaceae 

AJ704395, Marinobacter maritimus, Alteromonadaceae 

EF660754, Marinobacter goseongensis, Alteromonadaceae 

AY147906, Marinobacter lipolyticus, Alteromonadaceae 

AM503093, Marinobacter guineae, Alteromonadaceae 

AY241552, Marinobacter adhaerens, Alteromonadaceae 

AY517632, Marinobacter flavimaris, Alteromonadaceae 

AY258110, Marinobacter algicola, Alteromonadaceae 

EF028328, Marinobacter salsuginis, Alteromonadaceae 

AJ609270, Marinobacter sediminum, Alteromonadaceae 

AJ609271, Marinobacter bryozoorum, Alteromonadaceae 

EF157832, Marinobacter segnicrescens, Alteromonadaceae 

EU047505, Marinobacter lacisalsi, Alteromonadaceae 

EF486354, Marinobacter salicampi, Alteromonadaceae 

FJ984869, Marinobacter daqiaonensis, Alteromonadaceae 

DQ414419, Marinobacter gudaonensis, Alteromonadaceae 

AY180101, Marinobacter excellens, Alteromonadaceae 

AF479689, Marinobacter litoralis, Alteromonadaceae 

DQ235263, Marinobacter vinifirmus, Alteromonadaceae 

AY517633, Marinobacter daepoensis, Alteromonadaceae 

X67022, Marinobacter hydrocarbonoclasticus, type sp., Alteromonadaceae 

FJ897726, Marinobacter oulmenensis, Alteromonadaceae 

DQ325514, Marinobacter koreensis, Alteromonadaceae 

EU496088, Marinobacter santoriniensis, Alteromonadaceae 

DQ458821, Marinobacter pelagius, Alteromonadaceae 

EU164778, Marinobacter szutsaonensis, Alteromonadaceae 

EU293412, Marinobacter mobilis, Alteromonadaceae 

EU293413, Marinobacter zhejiangensis, Alteromonadaceae 

HQ203044, Marinobacter xestospongiae, Alteromonadaceae 

AF288157, Marinobacter lutaoensis, Alteromonadaceae 

Hahellaceae (4) 

DQ072719, Halospina denitrificans, type sp., Hahellaceae 

DQ072718, Halovibrio denitrificans, Halomonadaceae 

AB021383, Pseudomonas halophila, Pseudomonadaceae 

DQ019934, Salicola marasensis, type sp., Unclassified Oceanospirillales 

DQ129689, Salicola salis, Unclassified Oceanospirillales 

CP000155, Hahella chejuensis , type sp., Hahellaceae 

AY676463, Hahella ganghwensis, Hahellaceae 

EF495227, Hahella antarctica, Hahellaceae 

AY130994, Zooshikella ganghwensis, type sp., Hahellaceae 

AB196667, Endozoicomonas elysicola, type sp., Hahellaceae 

FJ347758, Endozoicomonas montiporae, Hahellaceae 

EU599216, Kistimonas asteriae, type sp., Hahellaceae 

Pseudomonadaceae (149) 

D84009, Pseudomonas azotoformans, Pseudomonadaceae 

AJ936933, Pseudomonas simiae, Pseudomonadaceae 

AF374472, Pseudomonas costantinii, Pseudomonadaceae 

AJ581999, Pseudomonas lurida, Pseudomonadaceae 

AJ492829, Pseudomonas poae, Pseudomonadaceae 

AJ492831, Pseudomonas trivialis, Pseudomonadaceae

AF405328, Pseudomonas extremorientalis, Pseudomonadaceae 

AF255336, Pseudomonas tolaasii, Pseudomonadaceae 

AY091527, Pseudomonas palleroniana, Pseudomonadaceae 

AY091528, Pseudomonas salomonii, Pseudomonadaceae 

AJ492830, Pseudomonas cedrina subsp. fulgida, Pseudomonadaceae 

AF064461, Pseudomonas cedrina subsp. cedrina, Pseudomonadaceae 

AF064457, Pseudomonas orientalis, Pseudomonadaceae 

D84013, Pseudomonas fluorescens, Pseudomonadaceae 

AJ537601, Pseudomonas antarctica, Pseudomonadaceae 

AJ537602, Pseudomonas meridiana, Pseudomonadaceae 

AJ583501, Pseudomonas extremaustralis, Pseudomonadaceae 

AF268029, Pseudomonas grimontii, Pseudomonadaceae 

AF268968, Pseudomonas brenneri, Pseudomonadaceae 

AJ537603, Pseudomonas proteolytica, Pseudomonadaceae 

AF074384, Pseudomonas gessardii, Pseudomonadaceae 

AF064459, Pseudomonas rhodesiae, Pseudomonadaceae 

D84017, Pseudomonas mucidolens, Pseudomonadaceae 

D84025, Pseudomonas synxantha, Pseudomonadaceae 

HQ223108, Thermoleophilum minutum, Thermoleophilaceae 

AF057645, Pseudomonas libanensis, Pseudomonadaceae 

Z76663, Pseudomonas marginalis, Pseudomonadaceae 

AY787208, Pseudomonas panacis, Pseudomonadaceae 

AF064460, Pseudomonas veronii, Pseudomonadaceae 

Z76654, Pseudomonas amygdali, Pseudomonadaceae 

AY180972, Pseudomonas viridiflava, Pseudomonadaceae 

AB021378, Pseudomonas ficuserectae, Pseudomonadaceae 

DQ318866, Pseudomonas syringae , Pseudomonadaceae 

AJ492828, Pseudomonas congelans, Pseudomonadaceae 

AJ492827, Pseudomonas cannabina, Pseudomonadaceae 

AJ278812, Pseudomonas protegens, Pseudomonadaceae 

FM208264, Pseudomonas saponiphila, Pseudomonadaceae 

Z76658, Pseudomonas cichorii, Pseudomonadaceae 

D84010, Pseudomonas caricapapayae, Pseudomonadaceae 

AB021402, Pseudomonas savastanoi, Pseudomonadaceae 

AJ492826, Pseudomonas tremae, Pseudomonadaceae 

AJ249382, Pseudomonas frederiksbergensis, Pseudomonadaceae 

AF058286, Pseudomonas mandelii, Pseudomonadaceae 

D84012, Pseudomonas corrugata, Pseudomonadaceae 

AJ292426, Pseudomonas kilonensis, Pseudomonadaceae 

AF100321, Pseudomonas brassicacearum subsp. brassicacearum, Pseudomonadaceae 

EU391388, Pseudomonas brassicacearum subsp. neoaurantiaca, Pseudomonadaceae 

AF386080, Pseudomonas mediterranea, Pseudomonadaceae 

AF100323, Pseudomonas thivervalensis, Pseudomonadaceae 

AY035996, Pseudomonas lini, Pseudomonadaceae 

AF074383, Pseudomonas migulae, Pseudomonadaceae 

FN645213, Pseudomonas arsenicoxydans, Pseudomonadaceae 

AF094733, Pseudomonas fragi, Pseudomonadaceae 

AB041885, Pseudomonas psychrophila, Pseudomonadaceae 

GU936597, Pseudomonas deceptionensis, Pseudomonadaceae 

D84027, Pseudomonas taetrolens, Pseudomonadaceae 

AB021395, Pseudomonas lundensis, Pseudomonadaceae 

FJ168539, Pseudomonas chlororaphis subsp. piscium, Pseudomonadaceae 

Z76673, Pseudomonas chlororaphis subsp. chlororaphis, Pseudomonadaceae 

AY509898, Pseudomonas chlororaphis subsp. aureofaciens, Pseudomonadaceae 

DQ682655, Pseudomonas chlororaphis subsp. aurantiaca, Pseudomonadaceae 

AF468450, Pseudomonas umsongensis, Pseudomonadaceae 

AM293566, Pseudomonas moorei, Pseudomonadaceae 

AJ011507, Pseudomonas vancouverensis, Pseudomonadaceae 

AM293567, Pseudomonas mohnii, Pseudomonadaceae 

AF068259, Pseudomonas jessenii, Pseudomonadaceae 

AM293565, Pseudomonas reinekei, Pseudomonadaceae 

FM201274, Pseudomonas baetica, Pseudomonadaceae 

Z76652, Pseudomonas agarici, Pseudomonadaceae 

AY970952, Pseudomonas moraviensis, Pseudomonadaceae 

AF468452, Pseudomonas koreensis, Pseudomonadaceae 

Y11150, Pseudomonas graminis, Pseudomonadaceae 

AY364537, Pseudomonas lutea, Pseudomonadaceae 

AJ011504, Pseudomonas abietaniphila, Pseudomonadaceae 

AY152673, Pseudomonas rhizosphaerae, Pseudomonadaceae 

AB126621, Pseudomonas japonica, Pseudomonadaceae 

AY970951, Pseudomonas vranovensis, Pseudomonadaceae 

AB021397, Pseudomonas asplenii, Pseudomonadaceae 

FJ483519, Pseudomonas fuscovaginae, Pseudomonadaceae 

AF064458, Pseudomonas monteilii, Pseudomonadaceae 

AB009457, Pseudomonas plecoglossicida, Pseudomonadaceae 

EU103629, Pseudomonas taiwanensis, Pseudomonadaceae 

AY907566, Pseudomonas entomophila, Pseudomonadaceae 

AF072688, Pseudomonas mosselii, Pseudomonadaceae 

D84004, Pseudomonas oryzihabitans, Pseudomonadaceae 

D84020, Pseudomonas putida, Pseudomonadaceae 

AB060137, Pseudomonas cremoricolorata, Pseudomonadaceae 

AB046999, Pseudomonas parafulva, Pseudomonadaceae 

AB046996, Pseudomonas fulva, Pseudomonadaceae 

AB021380, Pseudomonas pertucinogena, Pseudomonadaceae 

DQ088664, Pseudomonas xiamenensis, Pseudomonadaceae 

GQ161991, Pseudomonas bauzanensis, Pseudomonadaceae 

FN908483, Pseudomonas litoralis, Pseudomonadaceae 

EU888911, Pseudomonas pelagia, Pseudomonadaceae 

EU143352, Pseudomonas sabulinigri, Pseudomonadaceae 

EU286805, Pseudomonas xinjiangensis, Pseudomonadaceae 

AB125366, Pseudomonas pachastrellae, Pseudomonadaceae 

EU046271, Pseudomonas duriflava, Pseudomonadaceae 

D84002, Pseudomonas luteola, Pseudomonadaceae 

AB175652, Azomonas agilis, type sp., Pseudomonadaceae 

FM208263, Pseudomonas benzenivorans, Pseudomonadaceae 

AB175655, Azotobacter armeniacus, Pseudomonadaceae 

AB175656, Azotobacter salinestris, Pseudomonadaceae 

AB175657, Azotobacter vinelandii, Pseudomonadaceae 

AJ308318, Azorhizophilus paspali, type sp., Pseudomonadaceae 

AB175651, Azotobacter nigricans subsp. nigricans, Pseudomonadaceae 

AB189452, Pseudomonas azotifigens, Pseudomonadaceae 

AF302795, Pseudomonas indica, Pseudomonadaceae 

U26418, Pseudomonas balearica, Pseudomonadaceae 

AJ311980, Pseudomonas thermotolerans, Pseudomonadaceae 

AJ308319, Azotobacter beijerinckii, Pseudomonadaceae 

AB175653, Azotobacter chroococcum, type sp., Pseudomonadaceae 

Z76659, Pseudomonas citronellolis, Pseudomonadaceae 

DQ339153, Pseudomonas delhiensis, Pseudomonadaceae 

AF468448, Pseudomonas jinjuensis, Pseudomonadaceae 

AF039489, Pseudomonas knackmussii, Pseudomonadaceae 

AM088473, Pseudomonas nitroreducens, Pseudomonadaceae 

EF424401, Pseudomonas panipatensis, Pseudomonadaceae 

X06684, Pseudomonas aeruginosa, type sp., Pseudomonadaceae 

Z76668, Pseudomonas resinovorans, Pseudomonadaceae

AY953147, Pseudomonas otitidis, Pseudomonadaceae 

D84018, Pseudomonas oleovorans subsp. oleovorans, Pseudomonadaceae 

AJ575816, Pseudomonas psychrotolerans, Pseudomonadaceae 

AF094748, Pseudomonas stutzeri, Pseudomonadaceae 

AB176954, Pseudomonas xanthomarina, Pseudomonadaceae 

DQ868767, Pseudomonas tuomuerensis, Pseudomonadaceae 

GU269546, Serpens flexibilis, type sp., Pseudomonadaceae 

EU620679, Pseudomonas caeni, Pseudomonadaceae 

DQ842018, Pseudomonas oleovorans subsp. lubricantis, Pseudomonadaceae 

Z76666, Pseudomonas pseudoalcaligenes, Pseudomonadaceae 

AB030583, Pseudomonas alcaliphila, Pseudomonadaceae 

AB453701, Pseudomonas toyotomiensis, Pseudomonadaceae 

D84016, Pseudomonas mendocina, Pseudomonadaceae 

D84006, Pseudomonas alcaligenes, Pseudomonadaceae 

AY691188, Pseudomonas argentinensis, Pseudomonadaceae 

D84023, Pseudomonas straminea, Pseudomonadaceae 

FJ422810, Pseudomonas seleniipraecipitans, Pseudomonadaceae 

U01916, Pseudomonas flavescens, Pseudomonadaceae 

X99540, Pseudomonas anguilliseptica, Pseudomonadaceae 

AM114534, Pseudomonas peli, Pseudomonadaceae 

AM491810, Pseudomonas guineae, Pseudomonadaceae 

EU791281, Pseudomonas cuatrocienegasensis, Pseudomonadaceae 

DQ339144, Pseudomonas pohangensis, Pseudomonadaceae 

FJ424813, Pseudomonas taeanensis, Pseudomonadaceae 

FN429930, Pseudomonas composti, Pseudomonadaceae 

AM114527, Pseudomonas borbori, Pseudomonadaceae 

AB301071, Pseudomonas marincola, Pseudomonadaceae 

AY770691, Pseudomonas segetis, Pseudomonadaceae 

AB175654, Azomonas macrocytogenes, Pseudomonadaceae 

AAOA01000004, Congregibacter litoralis, type sp., Unclassified Gammaproteobacteria 

EU161717, Haliea rubra, Alteromonadaceae 

FN398053, Haliea mediterranea, Alteromonadaceae 

AM691086, Chromatocurvus halotolerans, type sp., Unclassified Gammaproteobacteria 

AY576769, Haliea salexigens, type sp., Alteromonadaceae 

AB602427, Halioglobus japonicus, type sp., Unclassified Gammaproteobacteria 

AB602430, Halioglobus pacificus, Unclassified Gammaproteobacteria 

FJ889619, Zhongshania antarctica, type sp., Unclassified Gammaproteobacteria 

HQ199599, Spongiibacter borealis, Unclassified Gammaproteobacteria 

FJ889678, Zhongshania guokunii, Unclassified Gammaproteobacteria 

EF988653, Spongiibacter tropicus, Unclassified Gammaproteobacteria 

AM117932, Spongiibacter marinus, type sp., Unclassified Gammaproteobacteria 

AY771747, Dasania marina, type sp., Unclassified Pseudomonadales 

AF055269, Saccharophagus degradans, type sp., Alteromonadaceae 

AB467279, Umboniibacter marinipuniceus , type sp., Unclassified Gammaproteobacteria 

FJ347760, Pseudoteredinibacter isoporae, type sp., Unclassified Alteromonadales 

AB626730, Maricurvus nonylphenolicus, type sp., Unclassified Alteromonadales 

AY576771, Eionea nigra, type sp., Unclassified Alteromonadales 

DQ822530, Gilvimarinus chinensis, type sp., Unclassified Alteromonadales 

AY028398, Teredinibacter turnerae, type sp., Unclassified Alteromonadales 

EF468719, Porticoccus litoralis, Unclassified Gammaproteobacteria 

AJ289164, Cellvibrio fibrivorans, Pseudomonadaceae 

AJ493583, Cellvibrio ostraviensis, Pseudomonadaceae 

AF448514, Cellvibrio fulvus, Pseudomonadaceae 

AF448513, Cellvibrio vulgaris, Pseudomonadaceae 

AF448515, Cellvibrio mixtus subsp. mixtus, type sp., Pseudomonadaceae 

AF452103, Cellvibrio japonicus, Pseudomonadaceae 

AJ289162, Cellvibrio gandavensis, Pseudomonadaceae 

AY839870, Marinimicrobium agarilyticum, Alteromonadaceae 

EU874388, Marinimicrobium locisalis, Alteromonadaceae 

AY839869, Marinimicrobium koreense, type sp., Alteromonadaceae 

AB158515, Microbulbifer agarilyticus, Alteromonadaceae 

AF500006, Microbulbifer elongatus, Alteromonadaceae 

GQ262813, Microbulbifer yueqingensis, Alteromonadaceae 

AF479688, Microbulbifer salipaludis, Alteromonadaceae 

U58338, Microbulbifer hydrolyticus, type sp., Alteromonadaceae 

EF486352, Microbulbifer celer, Alteromonadaceae 

AB500894, Microbulbifer chitinilyticus, Alteromonadaceae 

EF674853, Microbulbifer halophilus, Alteromonadaceae 

AB124836, Microbulbifer thermotolerans, Alteromonadaceae 

AB266054, Microbulbifer epialgicus, Alteromonadaceae 

AB167354, Microbulbifer variabilis, Alteromonadaceae 

AY377986, Microbulbifer maritimus, Alteromonadaceae 

EU365694, Microbulbifer donghaiensis, Alteromonadaceae 

GQ262812, Microbulbifer marinus, Alteromonadaceae 

AB500893, Microbulbifer okinawensis, Alteromonadaceae 

EF617350, Simiduia agarivorans, type sp., Unclassified Gammaproteobacteria 

GQ872422, Simiduia areninigrae, Unclassified Gammaproteobacteria 

Alcanivoracaceae (7) 

Y12579, Alcanivorax borkumensis, type sp., Alcanivoracaceae 

AJ001150, Alcanivorax jadensis, Alcanivoracaceae 

EU438901, Alcanivorax hongdengensis, Alcanivoracaceae 

AF328762, Alcanivorax venustensis, Alcanivoracaceae 

AY686709, Alcanivorax balearicus, Alcanivoracaceae 

AY683537, Alcanivorax dieselolei, Alcanivoracaceae 

DQ659451, Alcanivorax pacificus, Alcanivoracaceae 

Francisellaceae (8) 

EU683030, Francisella noatunensis subsp. orientalis, Francisellaceae 

DQ295795, Francisella noatunensis subsp. noatunensis, Francisellaceae 

JF290376, Francisella halioticida, Francisellaceae 

AY928394, Francisella philomiragia, Francisellaceae 

CP000915, Francisella tularensis subsp. mediasiatica, Francisellaceae 

Z21931, Francisella tularensis subsp. tularensis, type sp., Francisellaceae 

AY928396, Francisella tularensis subsp. novicida, Francisellaceae 

FN252413, Francisella hispaniensis, Francisellaceae 

M21292, Wolbachia persica, Anaplasmataceae 

AY102612, Caedibacter taeniospiralis, type sp., Unclassified Thiotrichales 

AB176554, Fangia hongkongensis, type sp., Unclassified Thiotrichales 

U36941, Piscirickettsia salmonis, type sp., Piscirickettsiaceae 

AB505051, Kangiella japonica, Alcanivoracaceae 

GU339304, Kangiella spongicola, Alcanivoracaceae 

HQ340606, Kangiella geojedonensis, Alcanivoracaceae 

AY520560, Kangiella koreensis, type sp., Alcanivoracaceae 

AY520561, Kangiella aquimarina, Alcanivoracaceae 

AB500095, Marinicella litoralis, type sp., Unclassified Gammaproteobacteria 

AB500096, Arenicella xantha, type sp., Unclassified Gammaproteobacteria 

Legionellaceae (52) 

Z32637, Legionella dumoffii, Legionellaceae 

Z32639, Legionella gormanii, Legionellaceae 

Z49720, Legionella cherrii, Legionellaceae 

HQ398202, Legionella steelei, Legionellaceae

Z49725, Legionella gratiana, Legionellaceae 

Z49738, Legionella wadsworthii, Legionellaceae 

Z32635, Legionella anisa, Legionellaceae 

Z49731, Legionella parisiensis, Legionellaceae 

Z49737, Legionella steigerwaltii, Legionellaceae 

Z32644, Legionella tucsonensis, Legionellaceae 

Z49721, Legionella cincinnatiensis, Legionellaceae 

Z49734, Legionella sainthelensi, Legionellaceae 

AY444740, Legionella longbeachae, Legionellaceae 

X97364, Legionella lytica, Legionellaceae 

X97359, Legionella rowbothamii, Legionellaceae 

X97366, Legionella drancourtii, Legionellaceae 

Z49732, Legionella quateirensis, Legionellaceae 

Z49736, Legionella shakespearei, Legionellaceae 

Z49729, Legionella moravica, Legionellaceae 

Z49739, Legionella worsleiensis, Legionellaceae 

X97363, Legionella fallonii, Legionellaceae 

HQ287902, Legionella pneumophila subsp. fraseri, Legionellaceae 

AF122885, Legionella pneumophila subsp. pascullei, Legionellaceae 

AE017354, Legionella pneumophila subsp. pneumophila, type sp., Legionellaceae 

AF122886, Legionella waltersii, Legionellaceae 

AM747393, Legionella dresdenensis, Legionellaceae 

AF424887, Legionella busanensis, Legionellaceae 

AF122883, Legionella gresilensis, Legionellaceae 

AF122884, Legionella beliardensis, Legionellaceae 

AF227161, Legionella maceachernii, Legionellaceae 

AF227162, Legionella micdadei, Legionellaceae 

Z49727, Legionella lansingensis, Legionellaceae 

Z32643, Legionella rubrilucens, Legionellaceae 

DQ667196, Legionella taurinensis, Legionellaceae 

Z32638, Legionella erythra, Legionellaceae 

Z49723, Legionella geestiana, Legionellaceae 

Z49733, Legionella quinlivanii, Legionellaceae 

AB233209, Legionella impletisoli, Legionellaceae 

AB233210, Legionella yabuuchiae, Legionellaceae 

EU701006, Legionella nagasakiensis, Legionellaceae 

Z32642, Legionella oakridgensis, Legionellaceae 

Z32640, Legionella israelensis, Legionellaceae 

Z49730, Legionella londiniensis, Legionellaceae 

Z49716, Legionella adelaidensis, Legionellaceae 

Z49717, Legionella birminghamensis, Legionellaceae 

Z49726, Legionella jamestowniensis, Legionellaceae 

Z32667, Legionella jordanis, Legionellaceae 

Z49722, Legionella fairfieldensis, Legionellaceae 

Z49728, Legionella nautarum, Legionellaceae 

Z32636, Legionella brunensis, Legionellaceae 

X97355, Legionella drozanskii, Legionellaceae 

X73395, Legionella feeleii, Legionellaceae 

AY359282, Aquicella lusitana, type sp., Coxiellaceae 

AY359283, Aquicella siphonis, Coxiellaceae 

GQ857549, Diplorickettsia massiliensis, type sp., Coxiellaceae 

Thiotrichaceae (9) 

GU269554, Thiothrix fructosivorans, Thiotrichaceae 

EU642573, Thiothrix caldifontis, Thiotrichaceae 

EU642572, Thiothrix lacustris, Thiotrichaceae 

L79961, Thiothrix unzii, Thiotrichaceae 

L40993, Thiothrix nivea, type sp., Thiotrichaceae 

AB042545, Thiothrix flexilis, Thiotrichaceae 

AF127020, Thiothrix defluvii, Thiotrichaceae 

AB042532, Thiothrix disciformis, Thiotrichaceae 

AB042819, Thiothrix eikelboomii, Thiotrichaceae 

EU672873, Methylogaea oryzae, type sp., Methylococcaceae 

Methylococcaceae (4) 

U89298, Methylocaldum gracile, Methylococcaceae 

U89300, Methylocaldum szegediense, type sp., Methylococcaceae 

U89297, Methylocaldum tepidum, Methylococcaceae 

AJ563935, Methylococcus capsulatus, type sp., Methylococcaceae 

Betaproteobacteria (491) 

Burkholderiales (348) 

Comamonadaceae (92) 

Y18616, Acidovorax defluvii, Comamonadaceae 

HM027578, Acidovorax radicis, Comamonadaceae 

AF078764, Acidovorax delafieldii, Comamonadaceae 

DQ327663, Verminephrobacter eiseniae, type sp., Comamonadaceae 

FJ599672, Acidovorax soli, Comamonadaceae 

AM084006, Acidovorax caeni, Comamonadaceae 

AF078765, Acidovorax facilis, type sp., Comamonadaceae 

AF078766, Acidovorax temperans, Comamonadaceae 

AB064317, Diaphorobacter nitroreducens, type sp., Comamonadaceae 

EU342381, Diaphorobacter oryzae, Comamonadaceae 

AJ418042, Alicycliphilus denitrificans, type sp., Comamonadaceae 

AJ007013, Acidovorax anthurii, Comamonadaceae 

AJ431731, Acidovorax valerianellae, Comamonadaceae 

AB074527, Giesbergeria anulus, Comamonadaceae 

AY780907, Giesbergeria kuznetsovii, Comamonadaceae 

AY780905, Giesbergeria voronezhensis, type sp., Comamonadaceae 

AB074522, Giesbergeria giesbergeri, Comamonadaceae 

AF078754, Giesbergeria sinuosa, Comamonadaceae 

EF469609, Pseudacidovorax intermedius, type sp., Comamonadaceae 

AF137505, Acidovorax avenae, Comamonadaceae 

AF137504, Acidovorax cattleyae, Comamonadaceae 

AF137506, Acidovorax citrulli, Comamonadaceae 

DQ360414, Acidovorax oryzae, Comamonadaceae 

AJ420325, Acidovorax konjaci, Comamonadaceae 

AB187586, Comamonas granuli, Comamonadaceae 

AF078753, Hylemonella gracilis, type sp., Comamonadaceae 

AJ420330, Xylophilus ampelinus, type sp., Unclassified Burkholderiales 

AB164432, Comamonas badia, Comamonadaceae 

GQ245981, Comamonas zonglianii, Comamonadaceae 

AF078772, Comamonas terrigena, type sp., Comamonadaceae 

AJ430344, Comamonas aquatica, Comamonadaceae 

AF233877, Comamonas denitrificans, Comamonadaceae 

AJ251577, Comamonas nitrativorans, Comamonadaceae 

AJ430347, Comamonas kerstersii, Comamonadaceae 

DQ453128, Comamonas odontotermitis, Comamonadaceae 

AF275377, Comamonas koreensis, Comamonadaceae 

DQ322069, Comamonas thiooxydans, Comamonadaceae 

M11224, Comamonas testosteroni, Comamonadaceae

EF015884, Comamonas composti, Comamonadaceae 

EU888308, Delftia lacustris, Comamonadaceae 

AB075017, Delftia tsuruhatensis, Comamonadaceae 

AB021417, Delftia acidovorans, type sp., Comamonadaceae 

EU346912, Brachymonas chironomi, Comamonadaceae 

D14320, Brachymonas denitrificans, Comamonadaceae 

AB089485, Lampropedia hyalina, type sp., Comamonadaceae 

AF285414, Xenophilus azovorans, type sp., Comamonadaceae 

EF660342, Xenophilus aerolatus, Comamonadaceae 

AF078755, Simplicispira psychrophila, Comamonadaceae 

DQ372987, Simplicispira limi, Comamonadaceae 

Y18618, Simplicispira metamorpha, type sp., Comamonadaceae 

GU233447, Rhodoferax antarcticus, Comamonadaceae 

D16211, Rhodoferax fermentans, type sp., Comamonadaceae 

CP000267, Albidiferax ferrireducens, type sp., Comamonadaceae 

EU825700, Pseudorhodoferax soli, type sp., Comamonadaceae 

AJ606333, Pseudorhodoferax caeni, Comamonadaceae 

FM178226, Limnohabitans australis, Comamonadaceae 

AJ938026, Limnohabitans curvus, type sp., Comamonadaceae 

FM165536, Limnohabitans parvus, Comamonadaceae 

FM165535, Limnohabitans planktonicus, Comamonadaceae 

DQ094183, Polaromonas hydrogenivorans, Comamonadaceae 

AY166684, Polaromonas naphthalenivorans, Comamonadaceae 

AM039830, Polaromonas aquatica, Comamonadaceae 

U14585, Polaromonas vacuolata, type sp., Comamonadaceae 

EU030285, Polaromonas jejuensis, Comamonadaceae 

AB120963, Curvibacter fontanus, Comamonadaceae 

AB109889, Curvibacter gracilis, type sp., Comamonadaceae 

AB021390, Curvibacter lanceolatus, Comamonadaceae 

AF078756, Curvibacter delicatus, Comamonadaceae 

AB300597, Variovorax boronicumulans, Comamonadaceae 

AJ420329, Variovorax paradoxus, type sp., Comamonadaceae 

AB245358, Variovorax ginsengisoli, Comamonadaceae 

DQ349098, Caenimonas koreensis, type sp., Comamonadaceae 

EU518930, Ottowia pentelensis, Comamonadaceae 

AJ537466, Ottowia thiooxydans, type sp., Comamonadaceae 

AF439400, Ramlibacter henchirensis, Comamonadaceae 

AF144383, Ramlibacter tataouinensis, type sp., Comamonadaceae 

DQ178978, Variovorax dokdonensis, Comamonadaceae 

HQ385753, Variovorax defluvii, Comamonadaceae 

DQ432053, Variovorax soli, Comamonadaceae 

DQ372983, Hydrogenophaga caeni, Comamonadaceae 

AJ585992, Hydrogenophaga atypica, Comamonadaceae 

AJ585993, Hydrogenophaga defluvii, Comamonadaceae 

AF078769, Hydrogenophaga palleronii, Comamonadaceae 

AF078768, Hydrogenophaga taeniospiralis, Comamonadaceae 

AF019037, Hydrogenophaga intermedia, Comamonadaceae 

EF532793, Hydrogenophaga bisanensis, Comamonadaceae 

AF078770, Hydrogenophaga pseudoflava, Comamonadaceae 

AF078771, Hydrogenophaga flava, type sp., Comamonadaceae 

AJ627188, Malikia granosa, type sp., Comamonadaceae 

AB077038, Malikia spinosa, Comamonadaceae 

AB077037, Macromonas bipunctata, Comamonadaceae 

DQ295805, Tepidicella xavieri, type sp., Comamonadaceae 

AM042693, Tepidimonas thermarum, Unclassified Burkholderiales 

AY845054, Tepidimonas taiwanensis, Unclassified Burkholderiales 

AF177943, Tepidimonas ignava, type sp., Unclassified Burkholderiales 

AY324139, Tepidimonas aquatica, Unclassified Burkholderiales 

AB008801, Caldimonas manganoxidans, type sp., Comamonadaceae 

AY845052, Caldimonas taiwanensis, Comamonadaceae 

AM501435, Pelomonas aquatica, Comamonadaceae 

AM501439, Pelomonas puraquae, Comamonadaceae 

AB021407, Pelomonas saccharophila, type sp., Comamonadaceae 

AY136099, Kinneretia asaccharophila, Comamonadaceae 

AB006851, Mitsuaria chitosanitabida, type sp., Unclassified Burkholderiales 

AY515390, Paucibacter toxinivorans, type sp., Unclassified Burkholderiales 

AB003623, Roseateles depolymerans, type sp., Comamonadaceae 

AM501445, Roseateles terrae, Comamonadaceae 

AM501446, Roseateles aquatilis, Comamonadaceae 

DQ664238, Inhella inkyongensis, type sp., Unclassified Burkholderiales 

HM013811, Inhella fonticola, Unclassified Burkholderiales 

HM037993, Vitreoscilla filiformis, Neisseriaceae 

L33975, Leptothrix discophora, Unclassified Burkholderiales 

GU591795, Sphaerotilus hippei, Unclassified Burkholderiales 

EU636006, Sphaerotilus montanus, Unclassified Burkholderiales 

FR749902, Sphaerotilus natans, type sp., Unclassified Burkholderiales 

FJ871054, Sphaerotilus natans subsp. sulfidivorans, Unclassified Burkholderiales 

X97071, Leptothrix mobilis, Unclassified Burkholderiales 

DQ656489, Aquincola tertiaricarbonis, type sp., Unclassified Burkholderiales 

AB188124, Azohydromonas australica, Alcaligenaceae 

EU542576, Ideonella azotifigens, Unclassified Burkholderiales 

X72724, Ideonella dechloratans, type sp., Unclassified Burkholderiales 

AJ888903, Rubrivivax benzoatilyticus, Unclassified Burkholderiales 

D16213, Rubrivivax gelatinosus, type sp., Unclassified Burkholderiales 

AY455809, Thiomonas intermedia, type sp., Unclassified Burkholderiales 

AY455808, Thiomonas perometabolis, Unclassified Burkholderiales 

AM492684, Thiomonas arsenitoxydans, Unclassified Burkholderiales 

DQ092334, Thiomonas bhubaneswarensis, Unclassified Burkholderiales 

GU233443, Thiomonas thermosulfata, Unclassified Burkholderiales 

AB245481, Thiomonas delicata, Unclassified Burkholderiales 

EU625663, Thiomonas islandica, Unclassified Burkholderiales 

AM774413, Rivibacter subsaxonicus, type sp., Unclassified Burkholderiales 

AB245356, Rhizobacter fulvus, Pseudomonadaceae 

AB297965, Rhizobacter dauci, type sp., Pseudomonadaceae 

DQ664244, Piscinibacter aquaticus, type sp., Unclassified Burkholderiales 

AF176594, Methylibium petroleiphilum, type sp., Unclassified Burkholderiales 

AF035050, Aquabacterium citratiphilum, Unclassified Burkholderiales 

AF035054, Aquabacterium commune, type sp., Unclassified Burkholderiales 

GU319965, Aquabacterium limnoticum, Unclassified Burkholderiales 

EF626687, Aquabacterium fontiphilum, Unclassified Burkholderiales 

AF035052, Aquabacterium parvum, Unclassified Burkholderiales 

AB188125, Azohydromonas lata, type sp., Alcaligenaceae 

DQ417336, Schlegelella aquatica, Comamonadaceae 

AY152824, Schlegelella thermodepolymerans, type sp., Comamonadaceae 

AB366174, Limnobacter litoralis, Burkholderiaceae 

AJ289885, Limnobacter thiooxidans, type sp., Burkholderiaceae 

Burkholderiaceae (70) 

AB495123, Burkholderia heleia, Burkholderiaceae 

AY965240, Burkholderia silvatlantica, Burkholderiaceae 

AY752958, Burkholderia mimosarum, Burkholderiaceae 

DQ514537, Burkholderia ferrariae, Burkholderiaceae 

AY773189, Burkholderia nodosa, Burkholderiaceae 

AB561874, Burkholderia bannensis, Burkholderiaceae

AJ420332, Burkholderia tropica, Burkholderiaceae 

AY221956, Burkholderia unamae, Burkholderiaceae 

AB488693, Burkholderia oxyphila, Burkholderiaceae 

AF263278, Burkholderia sacchari, Burkholderiaceae 

AB513180, Burkholderia acidipaludis, Burkholderiaceae 

AB024310, Burkholderia kururiensis, Burkholderiaceae 

AJ302311, Burkholderia tuberum, Burkholderiaceae 

AY435213, Burkholderia phenoliruptrix, Burkholderiaceae 

AJ302312, Burkholderia phymatum, Burkholderiaceae 

AY773186, Burkholderia sabiae, Burkholderiaceae 

Y17009, Burkholderia caribensis, Burkholderiaceae 

AY040365, Burkholderia hospita, Burkholderiaceae 

AB201285, Burkholderia terrae, Burkholderiaceae 

AM489502, Burkholderia megapolitana, Burkholderiaceae 

AM489501, Burkholderia bryophila, Burkholderiaceae 

AF215704, Burkholderia caledonica, Burkholderiaceae 

AB201286, Burkholderia ginsengisoli, Burkholderiaceae 

U96939, Burkholderia graminis, Burkholderiaceae 

AY040362, Burkholderia terricola, Burkholderiaceae 

U86373, Burkholderia xenovorans, Burkholderiaceae 

AY497470, Burkholderia phytofirmans, Burkholderiaceae 

EU035613, Burkholderia sediminicola, Burkholderiaceae 

AF215705, Burkholderia fungorum, Burkholderiaceae 

U96936, Burkholderia phenazinium, Burkholderiaceae 

AF061872, Burkholderia sartisoli, Burkholderiaceae 

U96935, Burkholderia glathei, Burkholderiaceae 

HM802212, Burkholderia zhejiangensis, Burkholderiaceae 

AF512827, Burkholderia sordidicola, Burkholderiaceae 

AB021423, Burkholderia caryophylli, Burkholderiaceae 

DQ465451, Burkholderia soli, Burkholderiaceae 

EU024168, Burkholderia gladioli, Burkholderiaceae 

U96933, Burkholderia plantarii, Burkholderiaceae 

U96931, Burkholderia glumae, Burkholderiaceae 

Y18703, Burkholderia multivorans, Burkholderiaceae 

AB030584, Burkholderia ubonensis, Burkholderiaceae 

AF097534, Burkholderia vietnamiensis, Burkholderiaceae 

AF148556, Burkholderia cenocepacia, Burkholderiaceae 

AM747628, Burkholderia latens, Burkholderiaceae 

U96927, Burkholderia cepacia, type sp., Burkholderiaceae 

AM747631, Burkholderia seminalis, Burkholderiaceae 

AM747632, Burkholderia metallica, Burkholderiaceae 

AM747630, Burkholderia arboris, Burkholderiaceae 

CP000150, Burkholderia lata, Burkholderiaceae 

GQ397111, Burkholderia contaminans, Burkholderiaceae 

AF043302, Burkholderia ambifaria, Burkholderiaceae 

AM747629, Burkholderia diffusa, Burkholderiaceae 

U96930, Burkholderia pyrrocinia, Burkholderiaceae 

AF097533, Burkholderia stabilis, Burkholderiaceae 

DQ108388, Burkholderia oklahomensis, Burkholderiaceae 

AF110188, Burkholderia mallei, Burkholderiaceae 

DQ108392, Burkholderia pseudomallei, Burkholderiaceae 

U91838, Burkholderia thailandensis, Burkholderiaceae 

AM420302, Burkholderia endofungorum, Burkholderiaceae 

AJ938142, Burkholderia rhizoxinica, Burkholderiaceae 

AF139173, Pandoraea apista, type sp., Burkholderiaceae 

Y09879, Pandoraea norimbergensis, Burkholderiaceae 

AB510957, Pandoraea faecigallinarum, Burkholderiaceae 

AB510956, Pandoraea vervacti, Burkholderiaceae 

AY268170, Pandoraea pnomenusa, Burkholderiaceae 

AB469785, Pandoraea oxalativorans, Burkholderiaceae 

AF139176, Pandoraea sputorum, Burkholderiaceae 

AF139175, Pandoraea pulmonicola, Burkholderiaceae 

EF397578, Pandoraea thiooxydans, Burkholderiaceae 

AEQP01000026, Lautropia mirabilis, type sp., Burkholderiaceae 

Oxalobacteraceae (57) 

EU808005, Massilia niastensis, Oxalobacteraceae 

FN814307, Massilia consociata, Oxalobacteraceae 

EF688526, Massilia aerilata, Oxalobacteraceae 

FR773700, Massilia oculi, Oxalobacteraceae 

AM231588, Massilia aurea, Oxalobacteraceae 

EF546777, Massilia brevitalea, Oxalobacteraceae 

FJ969486, Massilia jejuensis, Oxalobacteraceae 

EU808006, Massilia niabensis, Oxalobacteraceae 

AY679161, Massilia alkalitolerans, Oxalobacteraceae 

AM774587, Massilia varians, Oxalobacteraceae 

AM774589, Massilia haematophila, Oxalobacteraceae 

FJ969487, Massilia suwonensis, Oxalobacteraceae 

X65590, Telluria chitinolytica, Oxalobacteraceae 

X65589, Telluria mixta, type sp., Oxalobacteraceae 

U54470, Massilia timonae, type sp., Oxalobacteraceae 

HM777013, Massilia flava, Oxalobacteraceae 

AY965999, Massilia albidiflava, Oxalobacteraceae 

AY966001, Massilia lutea, Oxalobacteraceae 

AY376163, Duganella violaceinigra, Oxalobacteraceae 

AY965998, Massilia dura, Oxalobacteraceae 

AY966000, Massilia plicata, Oxalobacteraceae 

D14256, Duganella zoogloeoides, type sp., Oxalobacteraceae 

HM038005, Rugamonas rubra, type sp., Pseudomonadaceae 

Y08845, Janthinobacterium agaricidamnosum, Oxalobacteraceae 

Y08846, Janthinobacterium lividum, type sp., Oxalobacteraceae 

AB074523, Aquaspirillum arcticum, Neisseriaceae 

AM397630, Undibacterium pigrum, type sp., Oxalobacteraceae 

AM397629, Undibacterium parvum, Oxalobacteraceae 

GQ379228, Undibacterium oligocarboniphilum, Oxalobacteraceae 

EU489741, Herminiimonas glaciei, Oxalobacteraceae 

AM493906, Herminiimonas saxobsidens, Oxalobacteraceae 

AY728038, Herminiimonas arsenicoxydans, Oxalobacteraceae 

AM085762, Herminiimonas aquatilis, Oxalobacteraceae 

AY676462, Herminiimonas fonticola, type sp., Oxalobacteraceae 

AB469788, Oxalicibacterium faecigallinarum, Oxalobacteraceae 

AY061962, Oxalicibacterium flavum, type sp., Oxalobacteraceae 

AB469786, Oxalicibacterium horti, Oxalobacteraceae 

AB008503, Oxalicibacterium solurbis, Oxalobacteraceae 

AB021366, Herbaspirillum huttiense subsp. huttiense, Oxalobacteraceae 

AB109890, Herbaspirillum huttiense subsp. putei, Oxalobacteraceae 

FJ267649, Herbaspirillum aquaticum, Oxalobacteraceae 

AB094401, Herbaspirillum chlorophenolicum, Oxalobacteraceae 

AJ238358, Herbaspirillum frisingense, Oxalobacteraceae 

AF137508, Herbaspirillum rubrisubalbicans, Oxalobacteraceae 

Y10146, Herbaspirillum seropedicae, type sp., Oxalobacteraceae 

DQ150563, Herbaspirillum hiltneri, Oxalobacteraceae 

AF543312, Herbaspirillum lusitanum, Oxalobacteraceae

DQ188986, Herbaspirillum rhizosphaerae, Oxalobacteraceae 

AB074524, Herbaspirillum autotrophicum, Oxalobacteraceae 

AY281146, Collimonas arenae, Oxalobacteraceae 

AY281137, Collimonas pratensis, Oxalobacteraceae 

AJ310394, Collimonas fungivorans, type sp., Oxalobacteraceae 

HQ830497, Herbaspirillum aurantiacum, Oxalobacteraceae 

HQ830498, Herbaspirillum soli, Oxalobacteraceae 

HQ830496, Herbaspirillum canariense, Oxalobacteraceae 

U49757, Oxalobacter formigenes, type sp., Oxalobacteraceae 

FR733700, Oxalobacter vibrioformis, Oxalobacteraceae 

GU441679, Glaciimonas immobilis, type sp., Oxalobacteraceae 

X92555, Paucimonas lemoignei, type sp., Burkholderiaceae 

AF155567, Cupriavidus oxalaticus, Burkholderiaceae 

AF300324, Cupriavidus taiwanensis, Burkholderiaceae 

AB054961, Cupriavidus laharis, Burkholderiaceae 

AB121221, Cupriavidus pinatubonensis, Burkholderiaceae 

AF312022, Cupriavidus basilensis, Burkholderiaceae 

AF312020, Cupriavidus campinensis, Burkholderiaceae 

AF191737, Cupriavidus necator, type sp., Burkholderiaceae 

AB104447, Wautersia numazuensis, Burkholderiaceae 

AF500583, Cupriavidus respiraculi, Burkholderiaceae 

D87999, Cupriavidus metallidurans, Burkholderiaceae 

AF085226, Cupriavidus pauculus, Burkholderiaceae 

AF076645, Cupriavidus gilardii, Burkholderiaceae 

FN430567, Cupriavidus pampae, Burkholderiaceae 

EF016361, Ralstonia solanacearum, Burkholderiaceae 

AB021403, Ralstonia syzygii, Burkholderiaceae 

AF488779, Ralstonia insidiosa, Burkholderiaceae 

AJ270258, Ralstonia mannitolilytica, Burkholderiaceae 

AY741342, Ralstonia pickettii, type sp., Burkholderiaceae 

FM208180, Polynucleobacter acidiphobus, Burkholderiaceae 

FM208181, Polynucleobacter difficilis, Burkholderiaceae 

AM397067, Polynucleobacter necessarius subsp. necessarius, type sp., Burkholderiaceae 

AJ879783, Polynucleobacter necessarius subsp. asymbioticus, Burkholderiaceae 

AJ550672, Polynucleobacter cosmopolitanus, Burkholderiaceae 

FM208182, Polynucleobacter rarus, Burkholderiaceae 

Alcaligenaceae (45) 

AM944734, Advenella incenata, type sp., Alcaligenaceae 

AJ864470, Advenella kashmirensis, Alcaligenaceae 

AY880023, Advenella mimigardefordensis, Alcaligenaceae 

AJ251912, Oligella ureolytica, Alcaligenaceae 

AF133538, Oligella urethralis, type sp., Alcaligenaceae 

AJ277742, Brackiella oedipodis, type sp., Alcaligenaceae 

AF067729, Taylorella asinigenitalis, Alcaligenaceae 

X68645, Taylorella equigenitalis, type sp., Alcaligenaceae 

Y11890, Pelistega europaea, type sp., Alcaligenaceae 

FN556191, Candidimonas nitroreducens, type sp., Alcaligenaceae 

FN556192, Candidimonas humi, Alcaligenaceae 

DQ466075, Parapusillimonas granuli, type sp., Alcaligenaceae 

GQ232740, Pusillimonas harenae, Alcaligenaceae 

EF672088, Pusillimonas ginsengisoli, Alcaligenaceae 

GQ241322, Pusillimonas soli, Alcaligenaceae 

AY695828, Pusillimonas noertemannii, type sp., Alcaligenaceae 

FJ793551, Paralcaligenes ureilyticus, type sp., Alcaligenaceae 

AB166879, Castellaniella caeni, Alcaligenaceae 

EU873313, Castellaniella ginsengisoli, Alcaligenaceae 

U82826, Castellaniella denitrificans, Alcaligenaceae 

AJ005447, Castellaniella defragrans, type sp., Alcaligenaceae 

GQ241321, Castellaniella daejeonensis, Alcaligenaceae 

AY296718, Alcaligenes faecalis subsp. phenolicus, Alcaligenaceae 

D88008, Alcaligenes faecalis subsp. faecalis, type sp., Alcaligenaceae 

AJ242986, Alcaligenes faecalis subsp. parafaecalis, Alcaligenaceae 

FN391024, Paenalcaligenes hominis, type sp., Alcaligenaceae 

AJ278451, Achromobacter denitrificans, Alcaligenaceae 

AB010840, Achromobacter ruhlandii, Alcaligenaceae 

Y14908, Achromobacter xylosoxidans subsp. xylosoxidans, type sp., Alcaligenaceae 

AY170847, Achromobacter insolitus, Alcaligenaceae 

AY170848, Achromobacter spanius, Alcaligenaceae 

AB010841, Achromobacter piechaudii, Alcaligenaceae 

EU150134, Achromobacter marplatensis, Alcaligenaceae 

AF177666, Bordetella avium, Alcaligenaceae 

AJ277798, Bordetella trematum, Alcaligenaceae 

AF177667, Bordetella hinzii, Alcaligenaceae 

U04948, Bordetella bronchiseptica, Alcaligenaceae 

U04949, Bordetella parapertussis, Alcaligenaceae 

U04820, Bordetella holmesii, Alcaligenaceae 

U04950, Bordetella pertussis, type sp., Alcaligenaceae 

AJ249861, Bordetella petrii, Alcaligenaceae 

AY131213, Kerstersia gyiorum, type sp., Alcaligenaceae 

EF100696, Pigmentiphaga daeguensis, Alcaligenaceae 

AF282916, Pigmentiphaga kullae, type sp., Alcaligenaceae 

EU583723, Pigmentiphaga litoralis, Alcaligenaceae 

Sutterellaceae (5) 

AJ566849, Sutterella stercoricanis, Sutterellaceae 

GU585669, Sutterella wadsworthensis, type sp., Sutterellaceae 

AB300989, Sutterella parvirubra, Sutterellaceae 

AB491209, Parasutterella secunda, Sutterellaceae 

AB370250, Parasutterella excrementihominis, type sp., Sutterellaceae 

AB089482, Derxia gummosa, type sp., Alcaligenaceae 

Neisseriaceae (71) 

AB525415, Eikenella corrodens, type sp., Neisseriaceae 

EF212897, Stenoxybacter acetivorans, Neisseriaceae 

AF328147, Simonsiella muelleri, type sp., Neisseriaceae 

AB087265, Bergeriella denitrificans, type sp., Neisseriaceae 

AY551999, Kingella kingae, type sp., Neisseriaceae 

ADBF01000003, Neisseria elongata subsp. glycolytica, Neisseriaceae 

L06171, Neisseria elongata subsp. elongata, Neisseriaceae 

M22516, Kingella denitrificans, Neisseriaceae 

AJ239288, Neisseria animalis, Neisseriaceae 

X07714, Neisseria gonorrhoeae, type sp., Neisseriaceae 

AJ239289, Neisseria polysaccharea, Neisseriaceae 

ACDY02000019, Neisseria cinerea, Neisseriaceae 

GU233442, Neisseria iguanae, Neisseriaceae 

AJ239286, Neisseria lactamica, Neisseriaceae 

ACKO02000016, Neisseria sicca, Neisseriaceae 

L06168, Neisseria flavescens, Neisseriaceae 

AJ239291, Neisseria subflava, Neisseriaceae 

AJ629192, Kingella potus, Neisseriaceae 

AY560519, Neisseria bacilliformis, Neisseriaceae

L06164, Kingella oralis, Neisseriaceae 

FJ654664, Neisseria shayeganii, Neisseriaceae 

AF328150, Conchiformibius kuhniae, Neisseriaceae 

AB087261, Conchiformibius steedae, type sp., Neisseriaceae 

AJ586614, Uruburuella suis, type sp., Neisseriaceae 

L06170, Neisseria canis, Neisseriaceae 

AF487709, Neisseria dentiae, Neisseriaceae 

FJ654662, Neisseria wadsworthii, Neisseriaceae 

DQ006843, Neisseria zoodegmatis, Neisseriaceae 

AB087264, Alysiella crassa, Neisseriaceae 

AF487710, Alysiella filiformis, type sp., Neisseriaceae 

DQ006842, Neisseria animaloris, Neisseriaceae 

L06174, Vitreoscilla stercoraria, Neisseriaceae 

AM396358, Paludibacterium yongneupense, type sp., Neisseriaceae 

EF626692, Pseudogulbenkiania subflava, type sp., Neisseriaceae 

DQ415656, Gulbenkiania indica, Neisseriaceae 

AM295491, Gulbenkiania mobilis, type sp., Neisseriaceae 

EU109734, Chromobacterium aquaticum, Neisseriaceae 

DQ785104, Chromobacterium haemolyticum, Neisseriaceae 

AJ871127, Chromobacterium piscinae, Neisseriaceae 

AJ871128, Chromobacterium pseudoviolaceum, Neisseriaceae 

AE016825, Chromobacterium violaceum , type sp., Neisseriaceae 

AY344056, Chromobacterium subtsugae, Neisseriaceae 

EU594330, Aquitalea denitrificans, Neisseriaceae 

DQ018117, Aquitalea magnusonii, type sp., Neisseriaceae 

AB021385, Vogesella indigofera, type sp., Neisseriaceae 

EU287927, Vogesella lacus, Neisseriaceae 

EF626691, Vogesella perlucida, Neisseriaceae 

GQ246809, Vogesella mureinivorans, Neisseriaceae 

AB076000, Aquaspirillum putridiconchylium, Neisseriaceae 

AB074518, Aquaspirillum serpens, type sp., Neisseriaceae 

AF389085, Laribacter hongkongensis, type sp., Neisseriaceae 

U89333, Microvirgula aerodenitrificans, type sp., Neisseriaceae 

FJ593907, Chitinibacter alvei, Neisseriaceae 

AY264287, Chitinibacter tainanensis, type sp., Neisseriaceae 

AB681839, Iodobacter fluviatilis, type sp., Neisseriaceae 

FJ347759, Deefgea chitinilytica, Neisseriaceae 

AM397080, Deefgea rivuli, type sp., Neisseriaceae 

EU682455, Chitinilyticum litopenaei, Neisseriaceae 

DQ314581, Chitinilyticum aquatile, type sp., Neisseriaceae 

Y17602, Formivibrio citricus, type sp., Neisseriaceae 

AB453176, Chitiniphilus shinanonensis, type sp., Neisseriaceae 

DQ836355, Andreprevotia chitinilytica, type sp., Neisseriaceae 

EU287926, Andreprevotia lacus, Neisseriaceae 

FJ669217, Jeongeupia naejangsanensis , Neisseriaceae 

AB326110, Silvimonas iriomotensis, Neisseriaceae 

AB194302, Silvimonas terrae, type sp., Neisseriaceae 

AB326111, Silvimonas amylolytica, Neisseriaceae 

DQ256728, Chitinimonas koreensis, Burkholderiaceae 

AY323827, Chitinimonas taiwanensis, type sp., Burkholderiaceae 

GU362099, Chitinivorax tropicus, type sp., Unclassified Betaproteobacteria 

DQ280369, Leeia oryzae, type sp., Neisseriaceae 

EU685841, Thiobacillus thiophilus, Hydrogenophilaceae 

M79426, Thiobacillus thioparus, type sp., Hydrogenophilaceae 

AJ243144, Thiobacillus denitrificans, Hydrogenophilaceae 

U58019, Thiobacillus aquaesulis, Hydrogenophilaceae 

Methylophilaceae (13) 

AB193724, Methylophilus methylotrophus, type sp., Methylophilaceae 

EU194887, Methylophilus rhizosphaerae, Methylophilaceae 

FJ872109, Methylophilus luteus, Methylophilaceae 

FJ872108, Methylophilus flavus, Methylophilaceae 

AB193725, Methylophilus leisingeri, Methylophilaceae 

HM001269, Methylophilus glucosoxydans, Methylophilaceae 

DQ287786, Methylotenera mobilis, type sp., Methylophilaceae 

CP002056, Methylotenera versatilis, Methylophilaceae 

FR733702, Methylovorus glucosotrophus, type sp., Methylophilaceae 

AY486132, Methylovorus mays, Methylophilaceae 

DQ287787, Methylobacillus flagellatus, Methylophilaceae 

FR733701, Methylobacillus glycogenes, type sp., Methylophilaceae 

AY298905, Methylobacillus pratensis, Methylophilaceae 

Spirillaceae (2) 

GU585672, Spirillum volutans, type sp., Spirillaceae 

AY845251, Spirillum winogradskyi, Spirillaceae 

AB506456, Sulfuricella denitrificans, type sp., Hydrogenophilaceae 

Nitrosomonadaceae (3) 

AB070982, Nitrosomonas europaea, type sp., Nitrosomonadaceae 

AY123795, Nitrosomonas eutropha, Nitrosomonadaceae 

CP000103, Nitrosospira multiformis , Nitrosomonadaceae 

EF219370, Georgfuchsia toluolica, type sp., Rhodocyclaceae 

AB552842, Sulfuritalea hydrogenivorans, type sp., Rhodocyclaceae 

AJ306683, Sterolibacterium denitrificans, type sp., Rhodocyclaceae 

DQ442273, Methyloversatilis universalis, type sp., Rhodocyclaceae 

AY879297, Denitratisoma oestradiolicum, type sp., Rhodocyclaceae 

AB180657, Thiobacter subterraneus, type sp., Unclassified Burkholderiales 

Rhodocyclaceae (19) 

AJ318917, Dechloromonas denitrificans, Rhodocyclaceae 

AY277621, Dechloromonas hortensis, Rhodocyclaceae 

Y17060, Ferribacterium limneticum, type sp., Rhodocyclaceae 

AY007722, Quatrionicoccus australiensis, type sp., Rhodocyclaceae 

AF047462, Dechloromonas agitata, type sp., Rhodocyclaceae 

AB166882, Azonexus caeni, Rhodocyclaceae 

EF158390, Azonexus hydrophilus, Rhodocyclaceae 

AF011350, Azonexus fungiphilus, type sp., Rhodocyclaceae 

Y17601, Propionivibrio dicarboxylicus, type sp., Rhodocyclaceae 

AF016690, Propionivibrio pelophilus, Rhodocyclaceae 

AJ307983, Propionivibrio limicola, Rhodocyclaceae 

M34132, Rhodocyclus purpureus, type sp., Rhodocyclaceae 

D16208, Rhodocyclus tenuis, Rhodocyclaceae 

AF011347, Azospira oryzae, type sp., Rhodocyclaceae 

DQ974114, Azospira restricta, Rhodocyclaceae 

DQ413148, Zoogloea caeni, Rhodocyclaceae 

AJ011506, Zoogloea resiniphila, Rhodocyclaceae 

AB201043, Zoogloea oryzae, Rhodocyclaceae 

X74913, Zoogloea ramigera, type sp., Rhodocyclaceae 

AF011346, Azovibrio restrictus, type sp., Rhodocyclaceae 

AF123077, Azoarcus toluclasticus, Rhodocyclaceae 

L33694, Azoarcus tolulyticus, Rhodocyclaceae 

L33692, Azoarcus toluvorans, Rhodocyclaceae 

X77679, Azoarcus evansii, Rhodocyclaceae

Y14701, Azoarcus anaerobius, Rhodocyclaceae 

AJ315676, Azoarcus buckelii, Rhodocyclaceae 

AF011345, Azoarcus indigens, type sp., Rhodocyclaceae 

AF011343, Azoarcus communis, Rhodocyclaceae 

AJ005817, Thauera terpenica, Rhodocyclaceae 

AJ315677, Thauera aminoaromatica, Rhodocyclaceae 

Y17591, Thauera selenatis, type sp., Rhodocyclaceae 

AJ315678, Thauera phenylacetica, Rhodocyclaceae 

X77118, Thauera aromatica, Rhodocyclaceae 

AF123264, Thauera chlorobenzoica, Rhodocyclaceae 

Y17590, Thauera mechernichensis, Rhodocyclaceae 

AB021377, Thauera butanivorans, Rhodocyclaceae 

AJ005816, Thauera linaloolentis, Rhodocyclaceae 

Hydrogenophilaceae (5) 

FR749905, Hydrogenophilus hirschii, Hydrogenophilaceae 

AB009828, Hydrogenophilus thermoluteolus, type sp., Hydrogenophilaceae 

EU625664, Hydrogenophilus islandicus, Hydrogenophilaceae 

AY219713, Petrobacter succinatimandens, type sp., Hydrogenophilaceae 

AJ504663, Tepidiphilus margaritifer, type sp., Hydrogenophilaceae 

DQ665916, Uliginosibacterium gangwonense, type sp., Rhodocyclaceae 

Xanthomonadaceae (132) 

FR733718, Xanthomonas euvesicatoria, Xanthomonadaceae 

FR749910, Xanthomonas perforans, Xanthomonadaceae 

AB021399, Pseudomonas cissicola, Pseudomonadaceae 

Y10762, Xanthomonas cassavae, Xanthomonadaceae 

Y10757, Xanthomonas arboricola, Xanthomonadaceae 

Y10764, Xanthomonas bromi, Xanthomonadaceae 

GU993265, Xanthomonas phaseoli, Xanthomonadaceae 

Y10765, Xanthomonas codiaei, Xanthomonadaceae 

X95921, Xanthomonas oryzae, Xanthomonadaceae 

Y10758, Xanthomonas pisi, Xanthomonadaceae 

FR749942, Xanthomonas citri subsp. malvacearum, Xanthomonadaceae 

Y10755, Xanthomonas vasicola, Xanthomonadaceae 

Y10759, Xanthomonas hortorum, Xanthomonadaceae 

X95920, Xanthomonas fragariae, Xanthomonadaceae 

JQ955625, Xanthomonas dyei, Xanthomonadaceae 

X95922, Xanthomonas populi, Xanthomonadaceae 

AF208315, Xanthomonas cynarae, Xanthomonadaceae 

Y10763, Xanthomonas theicola, Xanthomonadaceae 

AE008922, Xanthomonas campestris, type sp., Xanthomonadaceae 

Y10761, Xanthomonas vesicatoria, Xanthomonadaceae 

Y10760, Xanthomonas cucurbitae, Xanthomonadaceae 

FR749911, Xanthomonas gardneri, Xanthomonadaceae 

X95919, Xanthomonas axonopodis, Xanthomonadaceae 

AY650027, Pseudoxanthomonas kaohsiungensis, Xanthomonadaceae 

AY550263, Pseudoxanthomonas koreensis, Xanthomonadaceae 

AY550264, Pseudoxanthomonas daejeonensis, Xanthomonadaceae 

AY927994, Pseudoxanthomonas suwonensis, Xanthomonadaceae 

AB008507, Pseudoxanthomonas japonensis, Xanthomonadaceae 

AF273082, Pseudoxanthomonas mexicana, Xanthomonadaceae 

EF424397, Pseudoxanthomonas indica, Xanthomonadaceae 

AF427039, Pseudoxanthomonas taiwanensis, Xanthomonadaceae 

AJ012231, Pseudoxanthomonas broegbernensis, type sp., Xanthomonadaceae 

AF203388, Xylella fastidiosa subsp. multiplex, Xanthomonadaceae 

AF192343, Xylella fastidiosa subsp. fastidiosa, type sp., Xanthomonadaceae 

AB021391, Pseudomonas boreopolis, Pseudomonadaceae 

AF273080, Stenotrophomonas acidaminiphila, Xanthomonadaceae 

GQ241320, Stenotrophomonas daejeonensis, Xanthomonadaceae 

AJ012229, Stenotrophomonas nitritireducens, Xanthomonadaceae 

AM403589, Stenotrophomonas terrae, Xanthomonadaceae 

AJ131116, Pseudomonas pictorum, Pseudomonadaceae 

AM403587, Stenotrophomonas humi, Xanthomonadaceae 

DQ109037, Stenotrophomonas ginsengisoli, Xanthomonadaceae 

AB166885, Stenotrophomonas koreensis, Xanthomonadaceae 

AB021406, Pseudomonas beteli, Pseudomonadaceae 

AB021405, Pseudomonas hibiscicola, Pseudomonadaceae 

AB294553, Stenotrophomonas maltophilia, type sp., Xanthomonadaceae 

FJ748683, Stenotrophomonas pavanii, Xanthomonadaceae 

AB021404, Pseudomonas geniculata, Pseudomonadaceae 

EU573216, Stenotrophomonas chelatiphaga, Xanthomonadaceae 

AJ293463, Stenotrophomonas rhizophila, Xanthomonadaceae 

EF575564, Pseudoxanthomonas sacheonensis, Xanthomonadaceae 

DQ438977, Pseudoxanthomonas yeongjuensis, Xanthomonadaceae 

AY686710, Pseudoxanthomonas kalamensis, Xanthomonadaceae 

DQ178977, Pseudoxanthomonas dokdonensis, Xanthomonadaceae 

AM418384, Pseudoxanthomonas spadix, Xanthomonadaceae 

Y10754, Xanthomonas hyacinthi, Xanthomonadaceae 

Y10756, Xanthomonas melonis, Xanthomonadaceae 

X99299, Xanthomonas translucens, Xanthomonadaceae 

X95918, Xanthomonas albilineans, Xanthomonadaceae 

Y10766, Xanthomonas sacchari, Xanthomonadaceae 

EU780693, Lysobacter bugurensis, Xanthomonadaceae 

EU833988, Lysobacter xinjiangensis, Xanthomonadaceae 

AB245359, Lysobacter panaciterrae, Xanthomonadaceae 

EF626688, Luteimonas aquatica, Xanthomonadaceae 

DQ846687, Luteimonas composti, Xanthomonadaceae 

EU295459, Luteimonas marina, Xanthomonadaceae 

AJ012228, Luteimonas mephitis, type sp., Xanthomonadaceae 

GU199001, Luteimonas lutimaris, Xanthomonadaceae 

EF660758, Luteimonas aestuarii, Xanthomonadaceae 

FJ948107, Luteimonas terricola, Xanthomonadaceae 

EU376963, Lysobacter oryzae, Xanthomonadaceae 

DQ191179, Lysobacter yangpyeongensis, Xanthomonadaceae 

DQ462461, Lysobacter niabensis, Xanthomonadaceae 

AB166878, Lysobacter koreensis, Xanthomonadaceae 

EU908051, Lysobacter korlensis, Xanthomonadaceae 

AJ298291, Lysobacter enzymogenes, type sp., Xanthomonadaceae 

AB019582, Lysobacter antibioticus, Xanthomonadaceae 

AB161361, Lysobacter gummosus, Xanthomonadaceae 

EF488749, Lysobacter capsici, Xanthomonadaceae 

EF623862, Lysobacter soli, Xanthomonadaceae 

AB161360, Lysobacter brunescens, Xanthomonadaceae 

AY557615, Silanimonas lenta, type sp., Xanthomonadaceae 

EF100698, Lysobacter dokdonensis, Xanthomonadaceae 

DQ462462, Lysobacter niastensis, Xanthomonadaceae 

AJ519986, Thermomonas fusca, Xanthomonadaceae 

DQ154906, Thermomonas koreensis, Xanthomonadaceae 

AJ519989, Thermomonas brevis, Xanthomonadaceae 

AJ300185, Thermomonas haemolytica, type sp., Xanthomonadaceae 

AF542054, Thermomonas hydrothermalis, Xanthomonadaceae 

AB245363, Lysobacter ginsengisoli, Xanthomonadaceae

EU237492, Lysobacter ximonensis, Xanthomonadaceae 

AB161359, Lysobacter concretionis, Xanthomonadaceae 

HQ315827, Lysobacter arseniciresistens, Xanthomonadaceae 

AM283465, Lysobacter defluvii, Xanthomonadaceae 

AB299978, Lysobacter spongiicola, Xanthomonadaceae 

DQ191178, Lysobacter daejeonensis, Xanthomonadaceae 

GU086401, Lysobacter ruishenii, Xanthomonadaceae 

EU376961, Arenimonas oryziterrae, Xanthomonadaceae 

HQ698842, Arenimonas metalli, Xanthomonadaceae 

AM229324, Arenimonas composti, Xanthomonadaceae 

DQ239766, Arenimonas malthae, Xanthomonadaceae 

AM229325, Arenimonas daejeonensis, Xanthomonadaceae 

DQ411038, Arenimonas donghaensis, type sp., Xanthomonadaceae 

AB245362, Dokdonella ginsengisoli, Xanthomonadaceae 

EU685334, Dokdonella soli, Xanthomonadaceae 

AJ969432, Dokdonella fugitiva, Xanthomonadaceae 

AY987368, Dokdonella koreensis, type sp., Xanthomonadaceae 

EU741687, Rudaea cellulosilytica, type sp., Xanthomonadaceae 

AY544768, Aquimonas voraii, type sp., Xanthomonadaceae 

AF039167, Rhodanobacter lindaniclasticus, type sp., Xanthomonadaceae 

AB286179, Rhodanobacter thiooxydans, Xanthomonadaceae 

EU332826, Rhodanobacter ginsenosidimutans, Xanthomonadaceae 

EU332829, Rhodanobacter panaciterrae, Xanthomonadaceae 

EF166076, Rhodanobacter terrae, Xanthomonadaceae 

FJ605268, Rhodanobacter soli, Xanthomonadaceae 

AB100608, Rhodanobacter fulvus, Xanthomonadaceae 

AM087226, Rhodanobacter spathiphylli, Xanthomonadaceae 

EU682683, Frateuria terrea, Xanthomonadaceae 

EF166075, Rhodanobacter ginsengisoli, Xanthomonadaceae 

AB091194, Frateuria aurantia, type sp., Xanthomonadaceae 

AB245367, Dyella ginsengisoli, Xanthomonadaceae 

EU604272, Dyella soli, Xanthomonadaceae 

AY884571, Dyella koreensis, Xanthomonadaceae 

AM939778, Dyella marensis, Xanthomonadaceae 

EF397574, Dyella thiooxydans, Xanthomonadaceae 

AJ580498, Luteibacter rhizovicinus, type sp., Xanthomonadaceae 

FM212561, Luteibacter anthropi, Xanthomonadaceae 

DQ181549, Luteibacter yeojuensis, Xanthomonadaceae 

AB110498, Dyella japonica, type sp., Xanthomonadaceae 

EU604273, Dyella terrae, Xanthomonadaceae 

AJ311653, Fulvimonas soli, type sp., Xanthomonadaceae 

FN298515, Pseudofulvimonas gallinarii, type sp., Xanthomonadaceae 

AF387301, Acidiferrobacter thiooxydans, type sp., Ectothiorhodospiraceae 

AF110274, Beggiatoa alba, type sp., Thiotrichaceae 

DQ834966, Methylohalomonas lacus, type sp., Unclassified Gammaproteobacteria 

Moraxellaceae (79) 

U39399, Psychrobacter immobilis, type sp., Moraxellaceae 

U46144, Psychrobacter phenylpyruvicus, Moraxellaceae 

AB094794, Psychrobacter okhotskensis, Moraxellaceae 

AY660685, Psychrobacter cryohalolentis, Moraxellaceae 

AY639871, Psychrobacter cibarius, Moraxellaceae 

AJ609555, Psychrobacter urativorans, Moraxellaceae 

AJ312213, Psychrobacter glacincola, Moraxellaceae 

AJ609556, Psychrobacter frigidicola, Moraxellaceae 

AJ430828, Psychrobacter luti, Moraxellaceae 

AY444822, Psychrobacter arcticus, Moraxellaceae 

AJ430827, Psychrobacter fozii, Moraxellaceae 

AJ313425, Psychrobacter nivimaris, Moraxellaceae 

AB453700, Psychrobacter piscatorii, Moraxellaceae 

AJ272303, Psychrobacter proteolyticus, Moraxellaceae 

AY722804, Psychrobacter aquimaris, Moraxellaceae 

AY722805, Psychrobacter namhaensis, Moraxellaceae 

AJ584833, Psychrobacter aquaticus, Moraxellaceae 

AJ584832, Psychrobacter vallis, Moraxellaceae 

AJ309941, Psychrobacter marincola, Moraxellaceae 

AJ309940, Psychrobacter submarinus, Moraxellaceae 

AJ539104, Psychrobacter salsus, Moraxellaceae 

AF441201, Psychrobacter jeotgali, Moraxellaceae 

AJ609272, Psychrobacter maritimus, Moraxellaceae 

AY513645, Psychrobacter alimentarius, Moraxellaceae 

AJ421528, Psychrobacter faecalis, Moraxellaceae 

AJ437696, Psychrobacter pulmonis, Moraxellaceae 

AB438958, Psychrobacter fulvigenes, Moraxellaceae 

AY842259, Psychrobacter celer, Moraxellaceae 

AB016057, Psychrobacter pacificensis, Moraxellaceae 

EU939718, Psychrobacter aestuarii, Moraxellaceae 

AJ609273, Psychrobacter arenosus, Moraxellaceae 

HM212668, Psychrobacter sanguinis, Moraxellaceae 

FM165580, Psychrobacter lutiphocae, Moraxellaceae 

AJ550856, Enhydrobacter aerosaccus, type sp., Moraxellaceae 

HM161851, Moraxella atlantae, Moraxellaceae 

DQ156147, Moraxella boevrei, Moraxellaceae 

FR822735, Moraxella lincolnii, Moraxellaceae 

AM884564, Moraxella pluranimalium, Moraxellaceae 

FM872292, Moraxella porci, Moraxellaceae 

AF005188, Moraxella cuniculi, Moraxellaceae 

AF005182, Moraxella bovis, Moraxellaceae 

AF005187, Moraxella caviae, Moraxellaceae 

DQ153089, Moraxella bovoculi, Moraxellaceae 

AF005186, Moraxella ovis, Moraxellaceae 

D64049, Moraxella lacunata, type sp., Moraxellaceae 

AF005184, Moraxella equi, Moraxellaceae 

DQ156148, Moraxella caprae, Moraxellaceae 

HM152563, Moraxella nonliquefaciens, Moraxellaceae 

AF005185, Moraxella catarrhalis, Moraxellaceae 

AJ269511, Moraxella canis, Moraxellaceae 

AF509827, Acinetobacter bouvetii, Moraxellaceae 

Z93440, Acinetobacter johnsonii, Moraxellaceae 

AJ278311, Acinetobacter schindleri, Moraxellaceae 

AJ293694, Acinetobacter gyllenbergii, Moraxellaceae 

AF509830, Acinetobacter tandoii, Moraxellaceae 

AF509825, Acinetobacter tjernbergiae, Moraxellaceae 

X81662, Acinetobacter haemolyticus, Moraxellaceae 

AJ626712, Acinetobacter beijerinckii, Moraxellaceae 

X81665, Acinetobacter lwoffii, Moraxellaceae 

X81659, Acinetobacter guillouiae, Moraxellaceae 

Z93443, Acinetobacter bereziniae, Moraxellaceae 

HQ180192, Acinetobacter nosocomialis, Moraxellaceae 

HQ180184, Acinetobacter pittii, Moraxellaceae 

AJ888983, Acinetobacter calcoaceticus, type sp., Moraxellaceae 

DQ832256, Acinetobacter brisouii, Moraxellaceae 

AF509820, Acinetobacter baylyi, Moraxellaceae

AF509823, Acinetobacter towneri, Moraxellaceae 

EU290155, Acinetobacter soli, Moraxellaceae 

AJ275038, Acinetobacter ursingii, Moraxellaceae 

AJ293691, Acinetobacter parvus, Moraxellaceae 

AJ295007, Acinetobacter venetianus, Moraxellaceae 

X81660, Acinetobacter baumannii, Moraxellaceae 

AF509829, Acinetobacter gerneri, Moraxellaceae 

X81664, Acinetobacter junii, Moraxellaceae 

X81666, Acinetobacter radioresistens, Moraxellaceae 

EF204258, Acinetobacter rudis, Moraxellaceae 

AF513979, Alkanindiges illinoisensis, type sp., Moraxellaceae 

GU731671, Paraperlucidibaca baekdonensis, type sp., Moraxellaceae 

DQ664237, Perlucidibaca piscinae, type sp., Moraxellaceae 

Sinobacteraceae (12) 

AJ001010, Nevskia ramosa, type sp., Nevskiaceae 

EF178286, Nevskia soli, Nevskiaceae 

GQ845011, Nevskia terrae, Nevskiaceae 

AY363245, Hydrocarboniphaga effusa, type sp., Nevskiaceae 

EU313812, Hydrocarboniphaga daqingensis, Nevskiaceae 

AB257720, Panacagrimonas perspica, type sp., Xanthomonadaceae 

AJ555478, Solimonas variicoloris, Unclassified Gammaproteobacteria 

EF067861, Solimonas soli, type sp., Unclassified Gammaproteobacteria 

EF154515, Solimonas flava, Unclassified Gammaproteobacteria 

EU303271, Solimonas aquatica, Unclassified Gammaproteobacteria 

AJ313020, Alkanibacter difficilis, type sp., Sinobacteraceae 

EF605262, Steroidobacter denitrificans, type sp., Sinobacteraceae 

Salinisphaeraceae (4) 

EF988634, Salinisphaera dokdonensis , Salinisphaeraceae 

AJ421425, Salinisphaera shabanensis, type sp., Salinisphaeraceae 

EU740416, Salinisphaera hydrothermalis, Salinisphaeraceae 

HM137558, Salinisphaera orenii, Salinisphaeraceae 

Halothiobacillaceae (6) 

U58020, Halothiobacillus halophilus, Halothiobacillaceae 

M90662, Halothiobacillus hydrothermalis, Halothiobacillaceae 

EU124668, Thioalkalibacter halophilus, type sp., Halothiobacillaceae 

AF170419, Halothiobacillus kellyi, Halothiobacillaceae 

AB304258, Thiofaba tepidiphila, type sp., Halothiobacillaceae 

AB118236, Thiovirga sulfuroxydans, type sp., Halothiobacillaceae 

Cardiobacteriaceae (4) 

M35014, Cardiobacterium hominis, type sp., Cardiobacteriaceae 

AF506987, Cardiobacterium valvarum, Cardiobacteriaceae 

M35015, Suttonella indologenes, type sp., Cardiobacteriaceae 

AJ717394, Suttonella ornithocola, Cardiobacteriaceae 

EU008088, Ignatzschineria indica, Xanthomonadaceae 

EU008089, Ignatzschineria ureiclastica, Xanthomonadaceae 

AJ252143, Ignatzschineria larvae, type sp., Xanthomonadaceae 

AM397063, Wohlfahrtiimonas chitiniclastica, type sp., Xanthomonadaceae 

GU206550, Plasticicumulans acidivorans, type sp., Unclassified Gammaproteobacteria 

AB266389, Thioprofundum hispidum, Thioalkalispiraceae 

AB468957, Thioprofundum lithotrophicum, type sp., Thioalkalispiraceae 

DQ469584, Thiohalophilus thiocyanatoxydans, type sp., Thioalkalispiraceae 

HM208383, Coxiella burnetii, type sp., Coxiellaceae 

Granulosicoccaceae (2) 

EF495228, Granulosicoccus antarcticus, type sp., Granulosicoccaceae 

FJ535355, Granulosicoccus coccoides, Granulosicoccaceae 

AF481118, Thioalkalispira microaerophila, type sp., Thioalkalispiraceae 

Chromatiaceae (45) 

AJ242772, Thiocapsa litoralis, Chromatiaceae 

AJ006062, Thiocapsa rosea, Chromatiaceae 

AF112998, Thiocapsa marina, Chromatiaceae 

AF113000, Thiocapsa roseopersicina, type sp., Chromatiaceae 

Y12297, Thiolamprovum pedioforme, type sp., Chromatiaceae 

AJ404006, Thiobaca trueperi, type sp., Chromatiaceae 

AJ223235, Lamprocystis purpurea, Chromatiaceae 

AJ006063, Lamprocystis roseopersicina, type sp., Chromatiaceae 

EF999974, Thiodictyon bacillosum, Chromatiaceae 

EF999973, Thiodictyon elegans, type sp., Chromatiaceae 

Y11317, Thiocystis gelatinosa, Chromatiaceae 

AJ224438, Thiocystis violascens, Chromatiaceae 

AM086640, Thiocystis cadagnonensis, Chromatiaceae 

Y12372, Thiocystis minor, Chromatiaceae 

AM086641, Thiocystis chemoclinalis, Chromatiaceae 

Y11315, Thiocystis violacea, type sp., Chromatiaceae 

AJ223234, Chromatium okenii, type sp., Chromatiaceae 

AJ224430, Isochromatium buderi, type sp., Chromatiaceae 

AM282561, Thiorhodococcus kakinadensis, Chromatiaceae 

FJ482231, Thiohalobacter thiocyanaticus, type sp., Unclassified Gammaproteobacteria 

AJ971090, Thiorhodococcus mannitoliphagus, Chromatiaceae 

Y11316, Thiorhodococcus minor, type sp., Chromatiaceae 

AM993156, Thiorhodococcus modestalkaliphilus, Chromatiaceae 

AM748925, Thiophaeococcus mangrovi, type sp., Chromatiaceae 

AM282559, Thiorhodococcus bheemlicus, Chromatiaceae 

AM712619, Allochromatium phaeobacterium, Chromatiaceae 

Y12365, Allochromatium warmingii, Chromatiaceae 

AM399029, Allochromatium renukae, Chromatiaceae 

Y12369, Allochromatium minutissimum, Chromatiaceae 

FM178268, Allochromatium vinosum, type sp., Chromatiaceae 

FM210274, Marichromatium fluminis, Chromatiaceae 

X93473, Marichromatium gracile, type sp., Chromatiaceae 

AJ224439, Marichromatium purpuratum, Chromatiaceae 

AJ543328, Marichromatium indicum, Chromatiaceae 

AM180952, Marichromatium bheemlicum, Chromatiaceae 

AM283535, Halochromatium roseum, Chromatiaceae 

X98597, Halochromatium salexigens, type sp., Chromatiaceae 

X93472, Halochromatium glycolicum, Chromatiaceae 

AJ002796, Thiohalocapsa halophila, type sp., Chromatiaceae 

AJ010125, Thioflavicoccus mobilis, type sp., Chromatiaceae 

AJ277023, Thioalkalicoccus limnaeus, type sp., Chromatiaceae 

Y12373, Thiococcus pfennigii, type sp., Chromatiaceae 

X84316, Rhabdochromatium marinum, type sp., Chromatiaceae 

AB016986, Thiorhodovibrio winogradskyi, type sp., Chromatiaceae 

AM491592, Thiohalocapsa marina, Chromatiaceae 

Ectothiorhodospiraceae (21) 

AF329083, Thioalkalivibrio jannaschii, Ectothiorhodospiraceae 

AF126546, Thioalkalivibrio versutus, type sp., Ectothiorhodospiraceae

AF126547, Thioalkalivibrio nitratis, Ectothiorhodospiraceae 

AF302081, Thioalkalivibrio thiocyanoxidans, Ectothiorhodospiraceae 

AY346464, Thioalkalivibrio halophilus, Ectothiorhodospiraceae 

AY079010, Thioalkalivibrio nitratireducens, Ectothiorhodospiraceae 

AF151432, Thioalkalivibrio paradoxus, Ectothiorhodospiraceae 

AJ006530, Thiorhodospira sibirica, type sp., Ectothiorhodospiraceae 

AF126545, Thioalkalivibrio denitrificans, Ectothiorhodospiraceae 

AY360060, Thioalkalivibrio thiocyanodenitrificans, Ectothiorhodospiraceae 

EU709878, Thioalkalivibrio sulfidiphilus, Ectothiorhodospiraceae 

X93476, Ectothiorhodospira marina, Ectothiorhodospiraceae 

AM943121, Ectothiorhodospira variabilis, Ectothiorhodospiraceae 

X93479, Ectothiorhodospira haloalkaliphila, Ectothiorhodospiraceae 

FM244738, Ectothiorhodospira salini, Ectothiorhodospiraceae 

X93481, Ectothiorhodospira mobilis, type sp., Ectothiorhodospiraceae 

FR733667, Ectothiorhodospira shaposhnikovii, Ectothiorhodospiraceae 

HM149323, Ectothiorhodospira magna, Ectothiorhodospiraceae 

AY298904, Ectothiorhodosinus mongolicus, type sp., Ectothiorhodospiraceae 

EU169227, Thiohalospira alkaliphila, Ectothiorhodospiraceae 

DQ469576, Thiohalospira halophila, type sp., Ectothiorhodospiraceae 

EF117909, Thiohalomonas denitrificans, type sp., Unclassified Gammaproteobacteria 

DQ836238, Thiohalomonas nitratireducens, Unclassified Gammaproteobacteria 

EU837269, Thioalbus denitrificans, type sp., Ectothiorhodospiraceae 

DQ789390, Methylonatrum kenyense, type sp., Unclassified Gammaproteobacteria 

X93477, Halorhodospira abdelmalekii, Ectothiorhodospiraceae 

FR749892, Halorhodospira halochloris, Ectothiorhodospiraceae 

CP000544, Halorhodospira halophila, type sp., Ectothiorhodospiraceae 

AJ318525, Halorhodospira neutriphila, Ectothiorhodospiraceae 

AF114783, Alkalispirillum mobile, type sp., Ectothiorhodospiraceae 

AF406554, Alkalilimnicola ehrlichii, Ectothiorhodospiraceae 

AJ404972, Alkalilimnicola halodurans, type sp., Ectothiorhodospiraceae 

EF103128, Natronocella acetinitrilica, type sp., Ectothiorhodospiraceae 

M26631, Arhodomonas aquaeolei, type sp., Ectothiorhodospiraceae 

HM038001, Nitrococcus mobilis, type sp., Ectothiorhodospiraceae 

AM404263, Aquisalimonas asiatica, type sp., Ectothiorhodospiraceae 

AB536747, Methylothermus subterraneus, Methylococcaceae 

AY829009, Methylothermus thermalis, type sp., Methylococcaceae 

AJ581837, Methylohalobius crimeensis, type sp., Methylococcaceae 

AB245479, Sulfurivirga caldicuralii, type sp., Piscirickettsiaceae 

CP000127, Nitrosococcus oceani , Chromatiaceae 

Acidithiobacillaceae (5) 

AJ459804, Acidithiobacillus albertensis, Acidithiobacillaceae 

Y11596, Acidithiobacillus thiooxidans, type sp., Acidithiobacillaceae 

AF376020, Acidithiobacillus ferrivorans, Acidithiobacillaceae 

AF465604, Acidithiobacillus ferrooxidans, Acidithiobacillaceae 

Z29975, Acidithiobacillus caldus, Acidithiobacillaceae 

AJ459801, Thermithiobacillus tepidarius, type sp., Thermithiobacillaceae 

DQ469582, Thiohalorhabdus denitrificans, type sp., Unclassified Gammaproteobacteria 

Alphaproteobacteria (1101) 

Bradyrhizobiaceae (31) 

M65248, Afipia felis, type sp., Bradyrhizobiaceae 

AB021393, Pseudomonas carboxydohydrogena, Pseudomonadaceae 

FR733697, Oligotropha carboxidovorans, type sp., Bradyrhizobiaceae 

M69186, Afipia clevelandensis, Bradyrhizobiaceae 

AF069956, Nitrobacter alkalicus, Bradyrhizobiaceae 

CP000115, Nitrobacter winogradskyi, type sp., Bradyrhizobiaceae 

AM114522, Nitrobacter vulgaris, Bradyrhizobiaceae 

L11663, Nitrobacter hamburgensis, Bradyrhizobiaceae 

AF123085, Rhodopseudomonas faecalis, Bradyrhizobiaceae 

AB087719, Rhodopseudomonas rhenobacensis, Bradyrhizobiaceae 

AB498818, Rhodopseudomonas pseudopalustris, Bradyrhizobiaceae 

AM947938, Rhodopseudomonas parapalustris, Bradyrhizobiaceae 

AB498815, Rhodopseudomonas palustris, type sp., Bradyrhizobiaceae 

FN813512, Rhodopseudomonas harwoodiae, Bradyrhizobiaceae 

D78366, Agromonas oligotrophica, type sp., Bradyrhizobiaceae 

AF338176, Bradyrhizobium denitrificans, Bradyrhizobiaceae 

AY372184, Bradyrhizobium betae, Bradyrhizobiaceae 

AB300992, Bradyrhizobium iriomotense, Bradyrhizobiaceae 

HQ231463, Bradyrhizobium huanghuaihaiense, Bradyrhizobiaceae 

AF208513, Bradyrhizobium liaoningense, Bradyrhizobiaceae 

AF193818, Bradyrhizobium yuanmingense, Bradyrhizobiaceae 

AJ558025, Bradyrhizobium canariense, Bradyrhizobiaceae 

U69638, Bradyrhizobium japonicum, type sp., Bradyrhizobiaceae 

X87273, Rhizobium lupini, Rhizobiaceae 

AF288304, Afipia birgiae, Bradyrhizobiaceae 

U87759, Afipia broomeae, Bradyrhizobiaceae 

AY029562, Afipia massiliensis, Bradyrhizobiaceae 

AY624134, Bradyrhizobium jicamae, Bradyrhizobiaceae 

U35000, Bradyrhizobium elkanii, Bradyrhizobiaceae 

AY624135, Bradyrhizobium pachyrhizi, Bradyrhizobiaceae 

GU433448, Bradyrhizobium lablabi, Bradyrhizobiaceae 

DQ062742, Pseudolabrys taiwanensis, type sp., Xanthobacteraceae 

DQ417335, Labrys neptuniae, Xanthobacteraceae 

AY362040, Labrys portucalensis, Xanthobacteraceae 

AB236172, Labrys methylaminiphilus, Xanthobacteraceae 

AJ535707, Labrys monachus, type sp., Xanthobacteraceae 

AB236170, Labrys miyagiensis, Xanthobacteraceae 

AB236169, Labrys okinawensis, Xanthobacteraceae 

EF382666, Labrys wisconsinensis, Xanthobacteraceae 

Beijerinckiaceae (16) 

AJ563931, Beijerinckia indica subsp. lacticogenes, Beijerinckiaceae 

CP001016, Beijerinckia indica subsp. indica, type sp., Beijerinckiaceae 

AJ563934, Beijerinckia derxii subsp. venezuelae, Beijerinckiaceae 

AJ563933, Beijerinckia derxii subsp. derxii, Beijerinckiaceae 

AJ563932, Beijerinckia mobilis, Beijerinckiaceae 

EU401905, Beijerinckia doebereinerae, Beijerinckiaceae 

FR686343, Methyloferula stellata, type.sp, Beijerinckiaceae 

FR733696, Rhodoblastus acidophilus, type sp., Bradyrhizobiaceae 

AM040096, Rhodoblastus sphagnicola, Bradyrhizobiaceae 

FM252034, Methylovirgula ligni, type sp., Beijerinckiaceae 

AJ278726, Methylocapsa acidiphila, type sp., Beijerinckiaceae 

FN433469, Methylocapsa aurea, Beijerinckiaceae 

EU586035, Methylorosula polaris, type sp., Beijerinckiaceae 

Y17144, Methylocella palustris, type sp., Beijerinckiaceae 

AJ491847, Methylocella silvestris, Beijerinckiaceae 

AJ555244, Methylocella tundrae, Beijerinckiaceae 

D25311, Rhodoplanes elegans, Hyphomicrobiaceae 

AB087717, Rhodoplanes serenus, Hyphomicrobiaceae 

FM202448, Rhodoplanes pokkaliisoli, Hyphomicrobiaceae 

D25313, Rhodoplanes roseus, type sp., Hyphomicrobiaceae

AM502287, Blastochloris gulmargensis, Hyphomicrobiaceae 

AF084495, Blastochloris viridis, type sp., Hyphomicrobiaceae 

D86514, Blastochloris sulfoviridis, Hyphomicrobiaceae 

Methylocystaceae (7) 

Y18946, Methylosinus sporium, Methylocystaceae 

Y18947, Methylosinus trichosporium, type sp., Methylocystaceae 

Y18945, Methylocystis parvus, type sp., Methylocystaceae 

AJ458473, Methylocystis echinoides, Methylocystaceae 

DQ364433, Methylocystis hirsuta, Methylocystaceae 

AJ414656, Methylocystis rosea, Methylocystaceae 

AM283543, Methylocystis heyeri, Methylocystaceae 

Methylobacteriaceae (37) 

AJ250801, Methylobacterium fujisawaense, Methylobacteriaceae 

AY683045, Methylobacterium oryzae, Methylobacteriaceae 

EF126746, Methylobacterium phyllosphaerae, Methylobacteriaceae 

FN868949, Methylobacterium longum, Methylobacteriaceae 

AB252208, Methylobacterium tardum, Methylobacteriaceae 

D32227, Methylobacterium radiotolerans, Methylobacteriaceae 

EF174498, Methylobacterium aerolatum, Methylobacteriaceae 

AB252202, Methylobacterium persicinum, Methylobacteriaceae 

AB252201, Methylobacterium komagatae, Methylobacteriaceae 

AB175649, Methylobacterium brachiatum, Methylobacteriaceae 

AB175636, Methylobacterium mesophilicum, Methylobacteriaceae 

AB252200, Methylobacterium gregans, Methylobacteriaceae 

AJ635304, Methylobacterium hispanicum, Methylobacteriaceae 

AM040156, Methylobacterium adhaesivum, Methylobacteriaceae 

EU912445, Methylobacterium gossipiicola, Methylobacteriaceae 

EF174497, Methylobacterium iners, Methylobacteriaceae 

AB607860, Methylobacterium oxalidis, Methylobacteriaceae 

FJ268657, Methylobacterium bullatum, Methylobacteriaceae 

FJ157976, Methylobacterium marchantiae, Methylobacteriaceae 

DQ471331, Methylobacterium jeotgali, Methylobacteriaceae 

FR733885, Methylobacterium cerastii, Methylobacteriaceae 

AF514774, Methylobacterium podarium, Methylobacteriaceae 

AB175642, Methylobacterium rhodesianum, Methylobacteriaceae 

AY251818, Methylobacterium populi, Methylobacteriaceae 

U58018, Methylobacterium thiocyanatum, Methylobacteriaceae 

AB175647, Methylobacterium zatmanii, Methylobacteriaceae 

AB175629, Methylobacterium aminovorans, Methylobacteriaceae 

D32224, Methylobacterium extorquens, Methylobacteriaceae 

AB175645, Methylobacterium suomiense, Methylobacteriaceae 

EF015478, Methylobacterium salsuginis, Methylobacteriaceae 

AB175644, Methylobacterium rhodinum, Methylobacteriaceae 

AJ635303, Methylobacterium aquaticum, Methylobacteriaceae 

EF426729, Methylobacterium platani, Methylobacteriaceae 

AJ851087, Methylobacterium variabile, Methylobacteriaceae 

AJ888239, Methylobacterium isbiliense, Methylobacteriaceae 

AF220763, Methylobacterium nodulans, Methylobacteriaceae 

AB175638, Methylobacterium organophilum, type sp., Methylobacteriaceae 

AF288300, Bosea eneae, Bradyrhizobiaceae 

AF288306, Bosea vestrisii, Bradyrhizobiaceae 

AJ250796, Bosea thiooxidans, type sp., Bradyrhizobiaceae 

AF273081, Bosea minatitlanensis, Bradyrhizobiaceae 

AF288309, Bosea massiliensis, Bradyrhizobiaceae 

EF584507, Chelatococcus daeguensis, Beijerinckiaceae 

DQ322070, Chelatococcus sambhunathii, Beijerinckiaceae 

AJ294349, Chelatococcus asaccharovorans, type sp., Beijerinckiaceae 

AB098515, Microvirga flocculans, type sp., Methylobacteriaceae 

GQ421849, Microvirga aerilata, Methylobacteriaceae 

FR733708, Microvirga subterranea, type sp., Methylobacteriaceae 

EU727176, Microvirga guangxiensis, Methylobacteriaceae 

GQ421848, Microvirga aerophila, Methylobacteriaceae 

FN430422, Camelimonas lactis, type sp., Beijerinckiaceae 

FR851926, Camelimonas abortus, Beijerinckiaceae 

EU878006, Salinarimonas rosea, type sp., Bradyrhizobiaceae 

GU125653, Salinarimonas ramus, Bradyrhizobiaceae 

DQ404188, Hansschlegelia plantiphila, type sp., Methylocystaceae 

DQ916067, Hansschlegelia zhihuaiae, Methylocystaceae 

FR733694, Albibacter methylovorans, type sp., Methylocystaceae 

AF004844, Methylopila capsulata, type sp., Methylocystaceae 

FJ502233, Methylopila jiangsuensis, Methylocystaceae 

AJ535709, Angulomicrobium amanitiforme, Hyphomicrobiaceae 

AJ535708, Angulomicrobium tetraedrale, type sp., Hyphomicrobiaceae 

AF004845, Methylorhabdus multivorans, type sp., Hyphomicrobiaceae 

AB166877, Starkeya koreensis, Xanthobacteraceae 

D32247, Starkeya novella, type sp., Xanthobacteraceae 

AM778407, Ancylobacter oerskovii, Xanthobacteraceae 

AY056830, Ancylobacter rudongensis, Xanthobacteraceae 

EU589386, Ancylobacter dichloromethanicus, Xanthobacteraceae 

M62790, Ancylobacter aquaticus, type sp., Xanthobacteraceae 

AY211515, Ancylobacter vacuolatus, Xanthobacteraceae 

AY211516, Ancylobacter polymorphus, Xanthobacteraceae 

FR733686, Aquabacter spiritensis, type sp., Hyphomicrobiaceae 

X99469, Xanthobacter tagetidis, Xanthobacteraceae 

AF399969, Xanthobacter aminoxidans, Xanthobacteraceae 

X94199, Xanthobacter flavus, Xanthobacteraceae 

X94201, Xanthobacter autotrophicus, type sp., Xanthobacteraceae 

AF399970, Xanthobacter viscosus, Xanthobacteraceae 

AF391130, Azorhizobium doebereinerae, Xanthobacteraceae 

D11342, Azorhizobium caulinodans, type sp., Xanthobacteraceae 

X94198, Xanthobacter agilis, Xanthobacteraceae 

AY039817, Kaistia adipata, type sp., Rhizobiaceae 

AB244762, Kaistia granuli, Rhizobiaceae 

EU723082, Kaistia terrae, Rhizobiaceae 

AM409363, Kaistia geumhonensis, Rhizobiaceae 

EF592609, Kaistia soli, Rhizobiaceae 

AM409364, Kaistia dalseonensis, Rhizobiaceae 

Hyphomicrobiaceae (16) 

HM037996, Pedomicrobium americanum, Hyphomicrobiaceae 

X97693, Pedomicrobium australicum, Hyphomicrobiaceae 

GU269548, Pedomicrobium ferrugineum, type sp., Hyphomicrobiaceae 

GU269549, Pedomicrobium manganicum, Hyphomicrobiaceae 

Y14313, Filomicrobium fusiforme, type sp., Hyphomicrobiaceae 

EF117253, Filomicrobium insigne, Hyphomicrobiaceae 

AB543807, Hyphomicrobium vulgare, type sp., Hyphomicrobiaceae 

Y14305, Hyphomicrobium zavarzinii, Hyphomicrobiaceae 

Y14303, Hyphomicrobium hollandicum, Hyphomicrobiaceae 

Y14311, Hyphomicrobium facile subsp. tolerans, Hyphomicrobiaceae 

Y14310, Hyphomicrobium facile subsp. ureaphilum, Hyphomicrobiaceae 

Y14309, Hyphomicrobium facile subsp. facile, Hyphomicrobiaceae

CP002083, Hyphomicrobium denitrificans, Hyphomicrobiaceae 

AF198623, Hyphomicrobium chloromethanicum, Hyphomicrobiaceae 

Y14307, Hyphomicrobium methylovorum, Hyphomicrobiaceae 

AF235089, Hyphomicrobium sulfonivorans, Hyphomicrobiaceae 

AB365487, Rhizomicrobium electricum, Unclassified Alphaproteobacteria 

AB081581, Rhizomicrobium palustre, type sp., Unclassified Alphaproteobacteria 

AF180468, Meganema perideroedes, type sp., Methylobacteriaceae 

AM403172, Geminicoccus roseus, type sp., Unclassified Alphaproteobacteria 

HM037994, Prosthecomicrobium hirschii, Hyphomicrobiaceae 

FN666247, Rhodomicrobium vannielii, type sp., Hyphomicrobiaceae 

AB127972, Pleomorphomonas koreensis, Methylocystaceae 

AB159680, Pleomorphomonas oryzae, type sp., Methylocystaceae 

AB017203, Prosthecomicrobium pneumaticum, type sp., Hyphomicrobiaceae 

FJ594057, Agaricicola taiwanensis, type sp., Rhodobacteraceae 

DQ097300, Amorphus coralli, type sp., Unclassified Rhizobiales 

FJ998414, Amorphus orientalis, Unclassified Rhizobiales 

Caulobacteraceae (41) 

AJ227797, Brevundimonas poindexterae, Caulobacteraceae 

AJ227798, Brevundimonas staleyi, Caulobacteraceae 

D12785, Brevundimonas bullata, Caulobacteraceae 

EF363713, Brevundimonas lenta, Caulobacteraceae 

AJ227784, Brevundimonas subvibrioides, Caulobacteraceae 

EU143355, Brevundimonas basaltis, Caulobacteraceae 

AJ227782, Brevundimonas bacteroides, Caulobacteraceae 

AJ227783, Brevundimonas variabilis, Caulobacteraceae 

AJ227785, Brevundimonas alba, Caulobacteraceae 

AY971368, Brevundimonas kwangchunensis, Caulobacteraceae 

DQ372984, Brevundimonas aveniformis, Caulobacteraceae 

FR775448, Brevundimonas faecalis, Caulobacteraceae 

DQ335215, Brevundimonas terrae, Caulobacteraceae 

AB021415, Brevundimonas diminuta, type sp., Caulobacteraceae 

AJ227779, Brevundimonas vancanneytii, Caulobacteraceae 

FJ544245, Brevundimonas naejangsanensis, Caulobacteraceae 

M83810, Brevundimonas halotolerans, Caulobacteraceae 

AM087199, Asticcacaulis benevestitus, Caulobacteraceae 

AY500141, Asticcacaulis taihuensis, Caulobacteraceae 

AJ247193, Asticcacaulis biprosthecium, Caulobacteraceae 

AJ247194, Asticcacaulis excentricus, type sp., Caulobacteraceae 

AJ227801, Brevundimonas mediterranea, Caulobacteraceae 

DQ442520, Streptomyces longisporoflavus, Streptomycetaceae 

AJ227786, Brevundimonas intermedia, Caulobacteraceae 

AB071954, Brevundimonas nasdae, Caulobacteraceae 

AJ227780, Brevundimonas vesicularis, Caulobacteraceae 

AJ227787, Brevundimonas aurantiaca, Caulobacteraceae 

AJ227759, Caulobacter fusiformis, Caulobacteraceae 

AB271055, Caulobacter ginsengisoli, Caulobacteraceae 

AB023427, Caulobacter segnis, Caulobacteraceae 

AJ009957, Caulobacter vibrioides, type sp., Caulobacteraceae 

AJ227774, Caulobacter mirabilis, Caulobacteraceae 

AJ227758, Caulobacter henricii, Caulobacteraceae 

AJ244650, Phenylobacterium haematophilum, Caulobacteraceae 

AJ227767, Phenylobacterium conjunctum, Caulobacteraceae 

AJ717391, Phenylobacterium falsum, Caulobacteraceae 

Y18216, Phenylobacterium immobile, type sp., Caulobacteraceae 

HM047736, Phenylobacterium muchangponense, Caulobacteraceae 

AB166881, Phenylobacterium koreense, Caulobacteraceae 

EU022524, Phenylobacterium composti, Caulobacteraceae 

AY534887, Phenylobacterium lituiforme, Caulobacteraceae 

AB175663, Pseudovibrio ascidiaceicola, Rhodobacteraceae 

AB246748, Pseudovibrio japonicus, Rhodobacteraceae 

AY486423, Pseudovibrio denitrificans, type sp., Rhodobacteraceae 

AF513441, Nesiotobacter exalbescens, type sp., Rhodobacteraceae 

D85832, Roseibium denhamense, type sp., Rhodobacteraceae 

D85836, Roseibium hamelinense, Rhodobacteraceae 

AJ582083, Labrenzia alexandrii, type sp., Rhodobacteraceae 

AY628423, Labrenzia marina, Rhodobacteraceae 

AJ878875, Labrenzia alba, Rhodobacteraceae 

AAUW01000023, Labrenzia aggregata, Rhodobacteraceae 

AJ400704, Pannonibacter phragmitetus, type sp., Rhodobacteraceae 

EU726271, Stappia indica, Rhodobacteraceae 

D88525, Stappia stellulata, type sp., Rhodobacteraceae 

GQ221761, Vasilyevaea enhydra, type sp., Unclassified Rhizobiales 

FJ560749, Vasilyevaea mishustinii, Unclassified Rhizobiales 

EF012357, Devosia insulae, Hyphomicrobiaceae 

HM474794, Devosia glacialis, Hyphomicrobiaceae 

GU441678, Devosia psychrophila, Hyphomicrobiaceae 

EF433462, Devosia chinhatensis, Hyphomicrobiaceae 

AB361068, Devosia yakushimensis , Hyphomicrobiaceae 

EF433461, Devosia crocina, Hyphomicrobiaceae 

DQ303125, Devosia soli, Hyphomicrobiaceae 

AJ549086, Devosia riboflavina, type sp., Hyphomicrobiaceae 

AM293857, Devosia subaequoris, Hyphomicrobiaceae 

AF469072, Devosia neptuniae, Hyphomicrobiaceae 

AJ786801, Devosia limi, Hyphomicrobiaceae 

EF433460, Devosia albogilva, Hyphomicrobiaceae 

EF575560, Devosia geojensis, Hyphomicrobiaceae 

EF988631, Maritalea myrionectae, type sp., Hyphomicrobiaceae 

AB583774, Maritalea porphyrae, Hyphomicrobiaceae 

EU255260, Maritalea mobilis, type sp., Hyphomicrobiaceae 

EF211830, Cucumibacter marinus, type sp., Hyphomicrobiaceae 

EU709017, Pelagibacterium halotolerans, type sp., Hyphomicrobiaceae 

EF540455, Pelagibacterium luteolum, Hyphomicrobiaceae 

EF465533, Pseudoxanthobacter soli, type sp., Xanthobacteraceae 

Rhizobiaceae and Aurantimonadaceae (73) 

U71078, Rhizobium hainanense, Rhizobiaceae 

EF035074, Rhizobium multihospitium, Rhizobiaceae 

U89832, Rhizobium tropici, Rhizobiaceae 

EF061096, Rhizobium miluonense, Rhizobiaceae 

AY626395, Rhizobium rubi, Rhizobiaceae 

AY738130, Rhizobium lusitanum, Rhizobiaceae 

D14501, Rhizobium rhizogenes, Rhizobiaceae 

X67234, Rhizobium leucaenae, Rhizobiaceae 

FJ839677, Rhizobium vallis, Rhizobiaceae 

EU256434, Rhizobium tubonense, Rhizobiaceae 

U29386, Rhizobium leguminosarum, type sp., Rhizobiaceae 

EF141340, Rhizobium phaseoli, Rhizobiaceae 

EU867317, Rhizobium endophyticum, Rhizobiaceae 

EU256404, Rhizobium tibeticum, Rhizobiaceae 

U28916, Rhizobium etli, Rhizobiaceae 

AY509899, Rhizobium pisi, Rhizobiaceae 

DQ835306, Rhizobium fabae, Rhizobiaceae

AF364069, Rhizobium loessense, Rhizobiaceae 

U89817, Rhizobium mongolense, Rhizobiaceae 

AF003375, Rhizobium yanglingense, Rhizobiaceae 

U86343, Rhizobium gallicum, Rhizobiaceae 

AF364068, Rhizobium indigoferae, Rhizobiaceae 

Y10170, Rhizobium sullae, Rhizobiaceae 

AJ639832, Arthrobacter viscosus, Micrococcaceae 

AM931436, Rhizobium alamii, Rhizobiaceae 

DQ100063, Rhizobium mesosinicum, Rhizobiaceae 

EF125187, Rhizobium borbori, Rhizobiaceae 

EU056823, Rhizobium oryzae, Rhizobiaceae 

DQ454123, Rhizobium pseudoryzae, Rhizobiaceae 

EU556969, Rhizobium petrolearium, Rhizobiaceae 

EF363715, Rhizobium soli, Rhizobiaceae 

D11343, Rhizobium galegae, Rhizobiaceae 

GU128881, Rhizobium vignae, Rhizobiaceae 

EU074168, Rhizobium alkalisoli, Rhizobiaceae 

DQ855276, Rhizobium cellulosilyticum, Rhizobiaceae 

AF025852, Rhizobium huautlense, Rhizobiaceae 

Aurantimonadaceae (7) 

DQ372921, Aureimonas altamirensis, type sp., Aurantimonadaceae 

EF373540, Aureimonas frigidaquae, Aurantimonadaceae 

AJ786361, Aurantimonas coralicida, type sp., Aurantimonadaceae 

U53824, Aurantimonas manganoxydans, Aurantimonadaceae 

DQ883810, Aureimonas ureilytica, Aurantimonadaceae 

AY178860, Fulvimarina pelagi, type sp., Aurantimonadaceae 

AY649762, Martelella mediterranea, type sp., Aurantimonadaceae 

Y17047, Rhizobium undicola, Rhizobiaceae 

HM776997, Rhizobium taibaishanense, Rhizobiaceae 

U45329, Rhizobium vitis, Rhizobiaceae 

Z30542, Rhizobium larrymoorei, Rhizobiaceae 

FJ969841, Rhizobium pusense, Rhizobiaceae 

EU401907, Beijerinckia fluminensis, Beijerinckiaceae 

AB247615, Rhizobium radiobacter, Rhizobiaceae 

HQ823551, Rhizobium skierniewicense, Rhizobiaceae 

X73041, Rhizobium aggregatum, Rhizobiaceae 

X73042, Blastobacter capsulatus, Bradyrhizobiaceae 

GU322905, Rhizobium halophytocola, Rhizobiaceae 

EU781656, Rhizobium rosettiformans, Rhizobiaceae 

EF440185, Rhizobium selenitireducens, Rhizobiaceae 

AY341343, Rhizobium daejeonense, Rhizobiaceae 

U86344, Rhizobium giardinii, Rhizobiaceae 

GU565534, Rhizobium herbae, Rhizobiaceae 

X68390, Ensifer saheli, Rhizobiaceae 

GU593061, Ensifer sojae, Rhizobiaceae 

AY034028, Ensifer kummerowiae, Rhizobiaceae 

AM181747, Ensifer kostiensis, Rhizobiaceae 

X67231, Ensifer fredii, Rhizobiaceae 

AF506513, Sinorhizobium americanum, Rhizobiaceae 

D14509, Ensifer meliloti, Rhizobiaceae 

AY500254, Ensifer numidicus , Rhizobiaceae 

L39882, Ensifer medicae, Rhizobiaceae 

Z78204, Ensifer arboris, Rhizobiaceae 

X68388, Ensifer terangae, Rhizobiaceae 

AY500255, Ensifer garamanticus , Rhizobiaceae 

DQ411930, Ensifer mexicanus, Rhizobiaceae 

AM181733, Ensifer adhaerens, type sp., Rhizobiaceae 

GQ241319, Shinella daejeonensis, Rhizobiaceae 

AB285481, Shinella yambaruensis, Rhizobiaceae 

FM177879, Shinella fusca, Rhizobiaceae 

AB187585, Shinella granuli, type sp., Rhizobiaceae 

AB238789, Shinella zoogloeoides, Rhizobiaceae 

EF070131, Shinella kummerowiae, Rhizobiaceae 

Phyllobacteriaceae (52) 

AY636000, Phyllobacterium catacumbae, Phyllobacteriaceae 

AY785325, Phyllobacterium ifriqiyense, Phyllobacteriaceae 

AY786080, Phyllobacterium trifolii, Phyllobacteriaceae 

AY785320, Phyllobacterium bourgognense, Phyllobacteriaceae 

AY785319, Phyllobacterium brassicacearum, Phyllobacteriaceae 

AY785315, Phyllobacterium myrsinacearum, type sp., Phyllobacteriaceae 

AJ968695, Phyllobacterium leguminum, Phyllobacteriaceae 

U07934, Mesorhizobium ciceri, Phyllobacteriaceae 

X67229, Mesorhizobium loti, type sp., Phyllobacteriaceae 

EU074203, Mesorhizobium shangrilense, Phyllobacteriaceae 

AY601516, Mesorhizobium australicum, Phyllobacteriaceae 

AJ011760, Aminobacter aganoensis, Phyllobacteriaceae 

AJ011761, Aminobacter niigataensis, Phyllobacteriaceae 

AF034798, Aminobacter ciceronei, Phyllobacteriaceae 

AJ011759, Aminobacter aminovorans, type sp., Phyllobacteriaceae 

AF107722, Aminobacter lissarensis, Phyllobacteriaceae 

D88524, Ahrensia kielensis, type sp., Rhodobacteraceae 

ABIA02000018, Hoeflea phototrophica, Phyllobacteriaceae 

AY598817, Hoeflea marina, type sp., Phyllobacteriaceae 

DQ364238, Hoeflea anabaenae, Phyllobacteriaceae 

AJ786600, Hoeflea alexandrii, Phyllobacteriaceae 

AF534573, Nitratireductor aquibiodomus, type sp., Phyllobacteriaceae 

AM498744, Nitratireductor kimnyeongensis, Phyllobacteriaceae 

HQ176467, Nitratireductor aquimarinus, Phyllobacteriaceae 

EU143347, Nitratireductor basaltis, Phyllobacteriaceae 

DQ659453, Nitratireductor pacificus, Phyllobacteriaceae 

GU447302, Nitratireductor indicus, Phyllobacteriaceae 

EF457243, Chelativorans multitrophicus, type sp., Phyllobacteriaceae 

EF457242, Chelativorans oligotrophicus, Phyllobacteriaceae 

EU169578, Mesorhizobium alhagi, Phyllobacteriaceae 

EU169581, Mesorhizobium camelthorni, Phyllobacteriaceae 

D32248, Pseudaminobacter defluvii, Phyllobacteriaceae 

AF072542, Pseudaminobacter salicylatoxidans, type sp., Phyllobacteriaceae 

Y15403, Aquamicrobium defluvii, type sp., Phyllobacteriaceae 

AJ132378, Aquamicrobium lusatiense, Phyllobacteriaceae 

FM210786, Aquamicrobium aerolatum, Phyllobacteriaceae 

AJ278249, Mesorhizobium chacoense, Phyllobacteriaceae 

DQ100066, Mesorhizobium albiziae, Phyllobacteriaceae 

EF149003, Mesorhizobium caraganae, Phyllobacteriaceae 

EF035058, Mesorhizobium tarimense, Phyllobacteriaceae 

EF035064, Mesorhizobium gobiense, Phyllobacteriaceae 

AM930381, Mesorhizobium metallidurans, Phyllobacteriaceae 

AF041447, Mesorhizobium tianshanense, Phyllobacteriaceae 

AM181745, Mesorhizobium mediterraneum, Phyllobacteriaceae 

AF508208, Mesorhizobium temperatum, Phyllobacteriaceae 

EU849582, Mesorhizobium robiniae, Phyllobacteriaceae 

AY601515, Mesorhizobium opportunistum, Phyllobacteriaceae

D13431, Mesorhizobium huakuii, Phyllobacteriaceae 

AF041442, Mesorhizobium amorphae, Phyllobacteriaceae 

AF508207, Mesorhizobium septentrionale, Phyllobacteriaceae 

Y14158, Mesorhizobium plurifarium, Phyllobacteriaceae 

AJ864462, Mesorhizobium thiogangeticum, Phyllobacteriaceae 

D12786, Mycoplana dimorpha, type sp., Brucellaceae 

D13944, Mycoplana ramosa, Brucellaceae 

Brucellaceae (33) 

AM180484, Pseudochrobactrum saccharolyticum, Brucellaceae 

FM209496, Pseudochrobactrum lubricantis, Brucellaceae 

AM180485, Pseudochrobactrum asaccharolyticum, type sp., Brucellaceae 

AM263420, Pseudochrobactrum kiredjianiae, Brucellaceae 

AB369864, Paenochrobactrum glaciei, Brucellaceae 

FN391023, Paenochrobactrum gallinarii, type sp., Brucellaceae 

AJ519939, Ochrobactrum gallinifaecis, Brucellaceae 

AM041247, Ochrobactrum oryzae, Brucellaceae 

DQ365921, Ochrobactrum pseudintermedium, Brucellaceae 

DQ647056, Ochrobactrum ciceri, Brucellaceae 

HQ171203, Ochrobactrum daejeonense, Brucellaceae 

U70978, Ochrobactrum intermedium, Brucellaceae 

EU053207, Brucella inopinata, Brucellaceae 

AM392286, Brucella microti, Brucellaceae 

AY594216, Brucella neotomae, Brucellaceae 

AY594215, Brucella melitensis , type sp., Brucellaceae 

L26168, Brucella ovis, Brucellaceae 

AM158979, Brucella abortus, Brucellaceae 

AM158982, Brucella ceti, Brucellaceae 

L37584, Brucella canis, Brucellaceae 

AM158980, Brucella suis, Brucellaceae 

AM158981, Brucella pinnipedialis, Brucellaceae 

AY776289, Ochrobactrum cytisi, Brucellaceae 

AY457038, Ochrobactrum lupini, Brucellaceae 

AJ242584, Ochrobactrum tritici, Brucellaceae 

CP000758, Ochrobactrum anthropi, type sp., Brucellaceae 

AM490609, Ochrobactrum pituitosum, Brucellaceae 

AM490632, Ochrobactrum rhizosphaerae, Brucellaceae 

AM490617, Ochrobactrum thiophenivorans, Brucellaceae 

AJ242581, Ochrobactrum grignonense, Brucellaceae 

AM422371, Ochrobactrum pseudogrignonense, Brucellaceae 

AM422370, Ochrobactrum haematophilum, Brucellaceae 

FR668302, Ochrobactrum pecoris, Brucellaceae 

Bartonellaceae (24) 

AY254309, Bartonella chomelii, Bartonellaceae 

AJ278187, Bartonella schoenbuchensis, Bartonellaceae 

AF293391, Bartonella bovis, Bartonellaceae 

AF293389, Bartonella capreoli, Bartonellaceae 

BX897699, Bartonella henselae, Bartonellaceae 

AF076237, Bartonella koehlerae, Bartonellaceae 

M65249, Bartonella bacilliformis, type sp., Bartonellaceae 

M73228, Bartonella quintana, Bartonellaceae 

Z31351, Bartonella doshiae, Bartonellaceae 

EU111754, Bartonella queenslandensis, Bartonellaceae 

EU111749, Bartonella rattaustraliani, Bartonellaceae 

L01259, Bartonella vinsonii subsp. vinsonii, Bartonellaceae 

EU111759, Bartonella coopersplainsensis, Bartonellaceae 

AB440632, Bartonella japonica, Bartonellaceae 

AB440636, Bartonella silvatica, Bartonellaceae 

L35052, Bartonella vinsonii subsp. berkhoffii, Bartonellaceae 

Z31349, Bartonella grahamii, Bartonellaceae 

L01260, Bartonella elizabethae, Bartonellaceae 

AJ003070, Bartonella tribocorum, Bartonellaceae 

AJ002139, Bartonella alsatica, Bartonellaceae 

AF204274, Bartonella birtlesii, Bartonellaceae 

Z31350, Bartonella taylorii, Bartonellaceae 

X89208, Bartonella clarridgeiae, Bartonellaceae 

DQ683196, Bartonella rochalimae, Bartonellaceae 

EF532794, Daeguia caeni, type sp., Brucellaceae 

Cohaesibacteraceae (2) 

DQ386307, Cohaesibacter gelatinilyticus, type sp., Cohaesibacteraceae 

GQ200200, Cohaesibacter marisflavi, Cohaesibacteraceae 

GQ272328, Breoghania corrubedonensis, type sp., Unclassified Alphaproteobacteria 

Rhodobiaceae (9) 

D30790, Afifella marina, type sp., Rhodobiaceae 

AB087720, Rhodopseudomonas julia, Bradyrhizobiaceae 

EU445271, Afifella pfennigii, Rhodobiaceae 

FR733679, Dichotomicrobium thermohalophilum, type sp., Hyphomicrobiaceae 

AM712634, Anderseniella baltica, type sp., Rhodobiaceae 

AM180706, Rhodobium gokarnense, Rhodobiaceae 

D30792, Rhodobium orientis, type sp., Rhodobiaceae 

GU187912, Tepidamorphus gemmatus, type sp., Rhodobiaceae 

FN297835, Lutibaculum baratangense, type sp., Rhodobiaceae 

FJ560750, Bauldia consociata, Unclassified Rhizobiales 

GQ221764, Bauldia litoralis, type sp., Unclassified Rhizobiales 

Rhodobacteraceae (229) 

AB601471, Roseibacterium elongatum, type sp., Rhodobacteraceae 

AB302386, Tranquillimonas alkanivorans, type sp., Rhodobacteraceae 

AJ534211, Dinoroseobacter shibae, type sp., Rhodobacteraceae 

DQ514326, Maribius pelagius, Rhodobacteraceae 

AY906863, Maribius salinus, type sp., Rhodobacteraceae 

FJ230842, Hwanghaeicola aestuarii, type sp., Rhodobacteraceae 

DQ915443, Maritimibacter alkaliphilus, type sp., Rhodobacteraceae 

HM997022, Celeribacter baekdonensis, Rhodobacteraceae 

FJ436725, Huaishuia halophila, type sp., Rhodobacteraceae 

FJ535354, Celeribacter neptunius, type sp., Rhodobacteraceae 

AB564595, Vadicella arenosi, type sp., Rhodobacteraceae 

DQ675021, Pseudoruegeria aquimaris, type sp., Rhodobacteraceae 

FJ374173, Pseudoruegeria lutimaris, Rhodobacteraceae 

AB558927, Pacificibacter maritimus, type sp., Rhodobacteraceae 

GQ243422, Roseovarius marinus, Rhodobacteraceae 

FJ882052, Planktotalea frisia, type sp., Rhodobacteraceae 

JN021667, Litoreibacter meonggei, Rhodobacteraceae 

AB518881, Litoreibacter albidus, type sp., Rhodobacteraceae 

AB518880, Litoreibacter janthinus, Rhodobacteraceae 

EU342372, Litoreibacter arenae, Rhodobacteraceae 

AJ631302, Thalassobacter stenotrophicus, type sp., Rhodobacteraceae 

AF114484, Roseovarius crassostreae, Rhodobacteraceae 

HQ852039, Roseovarius halocynthiae, Rhodobacteraceae 

AJ438157, Jannaschia helgolandensis, type sp., Rhodobacteraceae

AJ748747, Jannaschia rubra, Rhodobacteraceae 

EU156067, Jannaschia seohaensis, Rhodobacteraceae 

AY906862, Jannaschia seosinensis, Rhodobacteraceae 

DQ643999, Jannaschia pohangensis, Rhodobacteraceae 

EF202612, Jannaschia donghaensis, Rhodobacteraceae 

FJ638616, Hasllibacter halocynthiae, type sp., Rhodobacteraceae 

EU156066, Roseovarius aestuarii, Rhodobacteraceae 

AF098495, Roseovarius nubinhibens, Rhodobacteraceae 

AJ534215, Roseovarius mucosus, Rhodobacteraceae 

Y11551, Roseovarius tolerans, type sp., Rhodobacteraceae 

EF192392, Pelagicola litoralis, type sp., Rhodobacteraceae 

FJ403243, Roseovarius nanhaiticus, Rhodobacteraceae 

EF202613, Loktanella maricola, Rhodobacteraceae 

AY682199, Loktanella rosea, Rhodobacteraceae 

DQ533556, Loktanella tamlensis, Rhodobacteraceae 

AB576006, Poseidonocella sedimentorum, Rhodobacteraceae 

DQ344498, Loktanella koreensis, Rhodobacteraceae 

Y13155, Sulfitobacter pontiacus, type sp., Rhodobacteraceae 

DQ097527, Sulfitobacter litoralis, Rhodobacteraceae 

DQ683726, Sulfitobacter marinus, Rhodobacteraceae 

Y16425, Sulfitobacter brevis, Rhodobacteraceae 

Y17387, Sulfitobacter mediterraneus, Rhodobacteraceae 

AY180103, Sulfitobacter delicatus, Rhodobacteraceae 

AY180102, Sulfitobacter dubius, Rhodobacteraceae 

AJ550939, Oceanibulbus indolifex, type sp., Rhodobacteraceae 

EF202614, Sulfitobacter donghicola, Rhodobacteraceae 

Y16427, Sulfitobacter guttiformis, Rhodobacteraceae 

L01784, Roseobacter denitrificans, Rhodobacteraceae 

X78312, Roseobacter litoralis, type sp., Rhodobacteraceae 

FJ436732, Lentibacter algarum, type sp., Rhodobacteraceae 

AJ748748, Nereida ignava, type sp., Rhodobacteraceae 

AB193438, Tateyamaria omphalii, type sp., Rhodobacteraceae 

AJ968651, Tateyamaria pelophila, Rhodobacteraceae 

EU734592, Mameliella alba, type sp., Rhodobacteraceae 

U58356, Sagittula stellata, type sp., Rhodobacteraceae 

Y11552, Antarctobacter heliothermus, type sp., Rhodobacteraceae 

EF211829, Ponticoccus litoralis, type sp., Rhodobacteraceae 

AB302370, Tropicibacter naphthalenivorans, type sp., Rhodobacteraceae 

FR727679, Tropicibacter multivorans, Rhodobacteraceae 

U14583, Octadecabacter antarcticus, Rhodobacteraceae 

U73725, Octadecabacter arcticus, type sp., Rhodobacteraceae 

HM748766, Thalassobius maritimus, Rhodobacteraceae 

AB246747, Loktanella atrilutea, Rhodobacteraceae 

AJ582225, Loktanella fryxellensis, Rhodobacteraceae 

AJ440997, Loktanella salsilacus, type sp., Rhodobacteraceae 

AY600300, Loktanella hongkongensis, Rhodobacteraceae 

AM983542, Loktanella pyoseonensis, Rhodobacteraceae 

AY682198, Loktanella agnita, Rhodobacteraceae 

AJ582226, Loktanella vestfoldensis, Rhodobacteraceae 

EU221274, Seohaeicola saemankumensis, type sp., Rhodobacteraceae 

GQ232737, Litorimicrobium taeanense, type sp., Rhodobacteraceae 

FJ232451, Leisingera nanhaiensis, Rhodobacteraceae 

DQ514304, Phaeobacter arcticus, Rhodobacteraceae 

AY177712, Phaeobacter inhibens, Rhodobacteraceae 

Y13244, Phaeobacter gallaeciensis, type sp., Rhodobacteraceae 

D88526, Ruegeria atlantica, type sp., Rhodobacteraceae 

U77644, Silicibacter lacuscaerulensis, type sp., Rhodobacteraceae 

AF098491, Silicibacter pomeroyi, Rhodobacteraceae 

AB255401, Ruegeria mobilis, Rhodobacteraceae 

AM905330, Ruegeria scottomollicae, Rhodobacteraceae 

GU057915, Ruegeria faecimaris, Rhodobacteraceae 

HQ852038, Ruegeria halocynthiae, Rhodobacteraceae 

FJ265707, Salinihabitans flavidus, type sp., Rhodobacteraceae 

EU878003, Sediminimonas qiaohouensis, type sp., Rhodobacteraceae 

AY962292, Shimia marina, type sp., Rhodobacteraceae 

FJ976449, Shimia isoporae, Rhodobacteraceae 

AM904562, Nautella italica, type sp., Rhodobacteraceae 

AM900415, Leisingera aquimarina, Rhodobacteraceae 

AY005463, Leisingera methylohalidivorans, type sp., Rhodobacteraceae 

AM943630, Phaeobacter caeruleus, Rhodobacteraceae 

DQ981486, Phaeobacter daeponensis, Rhodobacteraceae 

X78315, Marinovum algicola, type sp., Rhodobacteraceae 

AY442178, Thalassobius aestuarii, Rhodobacteraceae 

AJ878874, Thalassobius mediterraneus, type sp., Rhodobacteraceae 

D88523, Thalassobius gelatinovorus, Rhodobacteraceae 

DQ397336, Thalassococcus halodurans, type sp., Rhodobacteraceae 

EU928765, Citreicella marina, Rhodobacteraceae 

AY639887, Citreicella thiooxidans, type sp., Rhodobacteraceae 

FJ230833, Citreicella aestuarii, Rhodobacteraceae 

AY926462, Palleronia marisminoris, type sp., Rhodobacteraceae 

AY527274, Salipiger mucosus, type sp., Rhodobacteraceae 

DQ178660, Pelagibaca bermudensis, type sp., Rhodobacteraceae 

AB550558, Primorskyibacter sedentarius, type sp., Rhodobacteraceae 

EU512919, Marivita cryptomonadis, type sp., Rhodobacteraceae 

JF260872, Marivita hallyeonensis, Rhodobacteraceae 

EU512918, Marivita litorea, Rhodobacteraceae 

FJ467624, Marivita byunsanensis, type sp., Rhodobacteraceae 

AY424898, Oceanicola batsensis, Rhodobacteraceae 

DQ414420, Oceanicola nanhaiensis, Rhodobacteraceae 

EU581832, Oceanicola nitratireducens, Rhodobacteraceae 

DQ822569, Oceanicola marinus, Rhodobacteraceae 

AJ505788, Pontibaca methylaminivorans, type sp., Rhodobacteraceae 

DQ667965, Donghicola eburneus, type sp., Rhodobacteraceae 

AB302379, Tropicimonas isoalkanivorans, type sp., Rhodobacteraceae 

HQ340608, Tropicimonas aquimaris, Rhodobacteraceae 

EU336981, Lutimaribacter saemankumensis, type sp., Rhodobacteraceae 

DQ659449, Oceanicola pacificus, Rhodobacteraceae 

FJ872535, Ruegeria marina, Rhodobacteraceae 

AY962295, Citreimonas salinaria, type sp., Rhodobacteraceae 

DQ120728, Donghicola xiamenensis, Rhodobacteraceae 

EU431217, Roseovarius halotolerans, Rhodobacteraceae 

DQ120726, Roseovarius pacificus, Rhodobacteraceae 

EU742628, Roseovarius indicus, Rhodobacteraceae 

D85829, Roseivivax halodurans, type sp., Rhodobacteraceae 

D85831, Roseivivax halotolerans, Rhodobacteraceae 

FJ593905, Roseivivax isoporae, Rhodobacteraceae 

HQ615878, Roseivivax sediminis, Rhodobacteraceae 

FJ875966, Roseivivax lentus, Rhodobacteraceae 

AJ877265, Yangia pacifica, type sp., Rhodobacteraceae 

AB576005, Poseidonocella pacifica, type sp., Rhodobacteraceae 

AF136850, Ketogulonicigenium robustum, Rhodobacteraceae 

AF136849, Ketogulonicigenium vulgare, type sp., Rhodobacteraceae 

AY424896, Oceanicola granulosus, type sp., Rhodobacteraceae

AJ605747, Roseisalinus antarcticus, type sp., Rhodobacteraceae 

EU338486, Rubellimicrobium aerolatum, Rhodobacteraceae 

EF547368, Rubellimicrobium mesophilum, Rhodobacteraceae 

AJ844281, Rubellimicrobium thermophilum, type sp., Rhodobacteraceae 

DQ640643, Wenxinia marina, type sp., Rhodobacteraceae 

AJ315682, Roseicyclus mahoneyensis, type sp., Rhodobacteraceae 

AJ864469, Paracoccus bengalensis, Rhodobacteraceae 

Y16933, Paracoccus pantotrophus, Rhodobacteraceae 

AY014174, Paracoccus versutus, Rhodobacteraceae 

AF250334, Paracoccus methylutens, Rhodobacteraceae 

DQ512861, Paracoccus sulfuroxidans, Rhodobacteraceae 

DQ423482, Paracoccus halophilus, Rhodobacteraceae 

GU129567, Paracoccus sphaerophysae, Rhodobacteraceae 

AB185957, Paracoccus marinus, Rhodobacteraceae 

Y13827, Paracoccus alkenifer, Rhodobacteraceae 

AY014175, Paracoccus solventivorans, Rhodobacteraceae 

D32241, Paracoccus kocurii, Rhodobacteraceae 

AB187584, Paracoccus koreensis, Rhodobacteraceae 

FJ842690, Paracoccus niistensis, Rhodobacteraceae 

EU660389, Paracoccus chinensis, Rhodobacteraceae 

AY014177, Paracoccus alcaliphilus, Rhodobacteraceae 

GQ281379, Paracoccus stylophorae, Rhodobacteraceae 

D32240, Paracoccus aminovorans, Rhodobacteraceae 

AY014176, Paracoccus aminophilus, Rhodobacteraceae 

Y16927, Paracoccus denitrificans, type sp., Rhodobacteraceae 

D32242, Paracoccus thiocyanatus, Rhodobacteraceae 

AY014173, Paracoccus yeei, Rhodobacteraceae 

AF250332, Paracoccus kondratievae, Rhodobacteraceae 

GQ250442, Paracoccus caeni, Rhodobacteraceae 

AF461158, Paracoccus zeaxanthinifaciens, Rhodobacteraceae 

DQ342239, Paracoccus homiensis, Rhodobacteraceae 

FJ593906, Paracoccus isoporae, Rhodobacteraceae 

GQ260189, Paracoccus fistulariae, Rhodobacteraceae 

DQ923133, Paracoccus saliphilus, Rhodobacteraceae 

AF030436, Methylarcula marina, type sp., Rhodobacteraceae 

AF030437, Methylarcula terricola, Rhodobacteraceae 

AB006899, Paracoccus carotinifaciens, Rhodobacteraceae 

Y12703, Paracoccus marcusii, Rhodobacteraceae 

AY189743, Paracoccus haeundaensis, Rhodobacteraceae 

AJ428275, Paracoccus seriniphilus, Rhodobacteraceae 

EF660757, Paracoccus aestuarii, Rhodobacteraceae 

AM408117, Rhodobacter vinaykumarii, Rhodobacteraceae 

D88522, Pseudorhodobacter ferrugineus, type sp., Rhodobacteraceae 

GU086365, Pseudorhodobacter aquimaris, Rhodobacteraceae 

AM690348, Rhodobacter ovatus, Rhodobacteraceae 

D70846, Rhodobacter azotoformans, Rhodobacteraceae 

AM398152, Rhodobacter johrii, Rhodobacteraceae 

AM421024, Rhodobacter megalophilus, Rhodobacteraceae 

X53853, Rhodobacter sphaeroides, Rhodobacteraceae 

EU289803, Catellibacterium nanjingense, Rhodobacteraceae 

FJ386516, Catellibacterium caeni, Rhodobacteraceae 

EU313813, Catellibacterium aquatile, Rhodobacteraceae 

FR733676, Gemmobacter aquatilis, type sp., Rhodobacteraceae 

AM399030, Catellibacterium changlense, Rhodobacteraceae 

AB101543, Catellibacterium nectariphilum, type sp., Rhodobacteraceae 

DQ342322, Rhodobacter blasticus, Rhodobacteraceae 

D16428, Rhodobacter capsulatus, type sp., Rhodobacteraceae 

AF452106, Haematobacter massiliensis, Rhodobacteraceae 

DQ342315, Haematobacter missouriensis, type sp., Rhodobacteraceae 

AM748926, Rhodobacter aestuarii, Rhodobacteraceae 

AM745438, Rhodobacter maris, Rhodobacteraceae 

AY656719, Thioclava pacifica, type sp., Rhodobacteraceae 

EF554833, Rhodobaca barguzinensis, Rhodobacteraceae 

AF248638, Rhodobaca bogoriensis, type sp., Rhodobacteraceae 

AJ605746, Roseibaca ekhonensis, type sp., Rhodobacteraceae 

DQ659236, Roseinatronobacter monicus, Rhodobacteraceae 

AF249749, Roseinatronobacter thiooxidans, type sp., Rhodobacteraceae 

FJ196006, Roseicitreum antarcticum, type sp., Rhodobacteraceae 

D16421, Rhodobacter veldkampii, Rhodobacteraceae 

D16418, Rhodovulum adriaticum, Rhodobacteraceae 

Y15012, Rhodovulum robiginosum, Rhodobacteraceae 

FN669139, Rhodovulum phaeolacus, Rhodobacteraceae 

AM180953, Rhodovulum imhoffii, Rhodobacteraceae 

Y15011, Rhodovulum iodosum, Rhodobacteraceae 

AJ891122, Rhodovulum marinum, Rhodobacteraceae 

AM748927, Rhodovulum kholense, Rhodobacteraceae 

AM180707, Rhodovulum visakhapatnamense, Rhodobacteraceae 

D16423, Rhodovulum sulfidophilum, type sp., Rhodobacteraceae 

EU287912, Jhaorihella thermophila, type sp., Rhodobacteraceae 

EU741680, Rhodovulum steppense, Rhodobacteraceae 

D16419, Rhodovulum strictum, Rhodobacteraceae 

AM921780, Rhodovulum lacipunicei, Rhodobacteraceae 

D16426, Rhodovulum euryhalinum, Rhodobacteraceae 

AF465833, Albidovulum inexpectatum, type sp., Rhodobacteraceae 

HQ709061, Albidovulum xiamenense, Rhodobacteraceae 

DQ280370, Albimonas donghaensis, type sp., Rhodobacteraceae 

U88042, Amaricoccus macauensis, Rhodobacteraceae 

U88043, Amaricoccus veronensis, Rhodobacteraceae 

U88044, Amaricoccus tamworthensis, Rhodobacteraceae 

U88041, Amaricoccus kaplicensis, type sp., Rhodobacteraceae 

D85834, Rubrimonas cliftonensis, type sp., Rhodobacteraceae 

EU857676, Rubribacterium polymorphum, Rhodobacteraceae 

AY387398, Parvibaculum lavamentivorans, type sp., Rhodobiaceae 

FJ182044, Parvibaculum indicum, Rhodobiaceae 

Hyphomonadaceae (24) 

FJ230835, Henriciella litoralis, Hyphomonadaceae 

EF660760, Henriciella marina, type sp., Hyphomonadaceae 

EU819081, Henriciella aquimarina, Hyphomonadaceae 

FM202497, Ponticaulis koreensis, type sp., Hyphomonadaceae 

CP000158, Hyphomonas neptunium , Hyphomonadaceae 

AF082795, Hyphomonas rosenbergii, Hyphomonadaceae 

AF082794, Hyphomonas hirschiana, Hyphomonadaceae 

AJ227813, Hyphomonas polymorpha, type sp., Hyphomonadaceae 

AF082797, Hyphomonas oceanitis, Hyphomonadaceae 

AF082791, Hyphomonas johnsonii, Hyphomonadaceae 

AF082790, Hyphomonas adhaerens, Hyphomonadaceae 

AJ227814, Hyphomonas jannaschiana, Hyphomonadaceae 

AJ421782, Hirschia baltica, type sp., Hyphomonadaceae 

FM202386, Hirschia maritima, Hyphomonadaceae 

AY576758, Hellea balneolensis, type sp., Hyphomonadaceae 

FJ230838, Litorimonas taeanensis, type sp., Hyphomonadaceae 

EF495229, Robiginitomaculum antarcticum, type sp., Hyphomonadaceae 

AJ227806, Maricaulis salignorans, Hyphomonadaceae

AJ227804, Maricaulis washingtonensis, Hyphomonadaceae 

AJ227802, Maricaulis maris, type sp., Hyphomonadaceae 

AJ227808, Maricaulis parjimensis, Hyphomonadaceae 

AJ301667, Maricaulis virginensis, Hyphomonadaceae 

AJ309862, Oceanicaulis alexandrii, type sp., Hyphomonadaceae 

AJ578476, Woodsholea maritima, type sp., Hyphomonadaceae 

Parvularculales (2) 

AF544015, Parvularcula bermudensis, type sp., Parvularculaceae 

EU346850, Parvularcula lutaonensis, Parvularculaceae 

AB617575, Rhodoligotrophos appendicifer, type sp., Rhodobiaceae 

Sphingomonadales (160) 

Sphingomonadaceae (134) 

EU707560, Sphingomonas oryziterrae, Sphingomonadaceae 

EU564841, Sphingomicrobium lutaoense, type sp., Sphingomonadaceae 

AB264131, Sphingomonas jaspsi, Sphingomonadaceae 

AB277583, Sphingomonas astaxanthinifaciens, Sphingomonadaceae 

AY769083, Sphingomonas kaistensis, Sphingomonadaceae 

Y10678, Sandaracinobacter sibiricus, type sp., Sphingomonadaceae 

AY902680, Sandarakinorhabdus limnophila, type sp., Sphingomonadaceae 

EU682685, Sphingomonas changbaiensis, Sphingomonadaceae 

HQ224549, Sphingomonas jejuensis, Sphingomonadaceae 

AB018439, Sphingomonas oligophenolica, Sphingomonadaceae 

AB021370, Sphingomonas echinoides, Sphingomonadaceae 

GQ253122, Sphingomonas glacialis, Sphingomonadaceae 

GQ161989, Sphingomonas alpina, Sphingomonadaceae 

AJ575817, Sphingomonas abaci, Sphingomonadaceae 

EU707561, Sphingomonas jinjuensis, Sphingomonadaceae 

AJ227812, Sphingomonas leidyi, Caulobacteraceae 

AF131295, Sphingomonas aquatilis, Sphingomonadaceae 

AB055863, Sphingomonas melonis, Sphingomonadaceae 

AJ429236, Sphingomonas aurantiaca, Sphingomonadaceae 

AJ429239, Sphingomonas faeni, Sphingomonadaceae 

AJ429240, Sphingomonas aerolata, Sphingomonadaceae 

FJ834325, Sphingomonas rubra, Sphingomonadaceae 

EF363714, Sphingomonas insulae, Sphingomonadaceae 

Y09637, Sphingomonas pruni, Sphingomonadaceae 

Y09638, Sphingomonas mali, Sphingomonadaceae 

EF660755, Sphingomonas aestuarii, Sphingomonadaceae 

AB166883, Sphingomonas soli, Sphingomonadaceae 

Y09639, Sphingomonas asaccharolytica, Sphingomonadaceae 

DQ178975, Sphingomonas dokdonensis, Sphingomonadaceae 

AM229669, Sphingomonas mucosissima, Sphingomonadaceae 

AF131296, Sphingomonas koreensis, Sphingomonadaceae 

AB033947, Sphingomonas azotifigens, Sphingomonadaceae 

X97776, Sphingomonas trueperi, Sphingomonadaceae 

AJ243751, Sphingomonas pituitosa, Sphingomonadaceae 

AB428568, Sphingomonas japonica, Sphingomonadaceae 

FJ754464, Sphingomonas xinjiangensis, Sphingomonadaceae 

AY453855, Sphingomonas phyllosphaerae, Sphingomonadaceae 

HM629444, Sphingomonas endophytica, Sphingomonadaceae 

AY894691, Sphingomonas yunnanensis, Sphingomonadaceae 

HM204925, Sphingomonas ginsenosidimutans, Sphingomonadaceae 

EF467848, Sphingomonas polyaromaticivorans, Sphingomonadaceae 

U37337, Sphingomonas paucimobilis, type sp., Sphingomonadaceae 

D84529, Sphingomonas sanguinis, Sphingomonadaceae 

AM412238, Sphingomonas pseudosanguinis, Sphingomonadaceae 

D84520, Sphingomonas roseiflava, Sphingomonadaceae 

AB071955, Sphingomonas yabuuchiae, Sphingomonadaceae 

D13724, Sphingomonas parapaucimobilis, Sphingomonadaceae 

AJ871435, Sphingomonas desiccabilis, Sphingomonadaceae 

AB248285, Sphingomonas molluscorum, Sphingomonadaceae 

AJ575818, Sphingomonas panni, Sphingomonadaceae 

FJ194436, Sphingomonas hankookensis, Sphingomonadaceae 

DQ789172, Sphingomonas sanxanigenens, Sphingomonadaceae 

AJ009706, Sphingomonas fennica, Sphingomonadaceae 

HM193517, Sphingomonas formosensis, Sphingomonadaceae 

EF530202, Sphingomonas histidinilytica, Sphingomonadaceae 

AB021492, Sphingomonas wittichii, Sphingomonadaceae 

X94101, Sphingomonas haloaromaticamans, Sphingomonadaceae 

AF281032, Zymomonas mobilis subsp. pomaceae, Sphingomonadaceae 

AF281031, Zymomonas mobilis subsp. mobilis, type sp., Sphingomonadaceae 

EU581829, Stakelama pacifica, type sp., Sphingomonadaceae 

AB084247, Sphingosinicella microcystinivorans, type sp., Sphingomonadaceae 

AY950663, Sphingosinicella xenopeptidilytica, Sphingomonadaceae 

DQ087403, Sphingosinicella soli, Sphingomonadaceae 

FJ442859, Sphingosinicella vermicomposti , Sphingomonadaceae 

EF465534, Sphingobium rhizovicinum, Sphingomonadaceae 

EF534725, Sphingobium lucknowense, Sphingomonadaceae 

AY519129, Sphingobium indicum, Sphingomonadaceae 

EF190507, Sphingobium chinhatense, Sphingomonadaceae 

AY519130, Sphingobium francense, Sphingomonadaceae 

AF039168, Sphingobium japonicum, Sphingomonadaceae 

AF159257, Sphingobium chungbukense, Sphingomonadaceae 

X87161, Sphingomonas chlorophenolica, Sphingomonadaceae 

AM998824, Sphingobium vermicomposti, Sphingomonadaceae 

DQ092757, Sphingobium fuliginis, Sphingomonadaceae 

AB022428, Sphingomonas herbicidovorans, Sphingomonadaceae 

EU781657, Sphingobium quisquiliarum, Sphingomonadaceae 

AB047364, Sphingobium amiense, Sphingomonadaceae 

EU009209, Sphingobium scionense, Sphingomonadaceae 

D13728, Sphingomonas yanoikuyae, Sphingomonadaceae 

AB040739, Sphingobium cloacae, Sphingomonadaceae 

EF207155, Sphingobium ummariense, Sphingomonadaceae 

FJ373058, Sphingobium faniae, Sphingomonadaceae 

FJ686047, Sphingobium wenxiniae, Sphingomonadaceae 

AB021416, Sphingobium abikonense, Sphingomonadaceae 

EU675846, Sphingobium lactosutens, Sphingomonadaceae 

AM489507, Sphingobium olei, Sphingomonadaceae 

AM181012, Sphingobium aromaticiconvertens, Sphingomonadaceae 

X94098, Sphingobium xenophagum, Sphingomonadaceae 

EU095328, Sphingobium qiguonii, Sphingomonadaceae 

HM748834, Sphingobium jiangsuense, Sphingomonadaceae 

FJ177535, Sphingobium vulgare, Sphingomonadaceae 

D13737, Sphingomonas suberifaciens, Sphingomonadaceae 

AB024288, Blastomonas natatoria, type sp., Sphingomonadaceae 

AB024289, Sphingomonas ursincola, Sphingomonadaceae 

AJ303009, Novosphingobium lentum, Sphingomonadaceae 

AB070237, Novosphingobium tardaugens, Sphingomonadaceae 

AJ416411, Novosphingobium hassiacum, Sphingomonadaceae 

DQ448852, Novosphingobium nitrogenifigens, Sphingomonadaceae

AB025013, Sphingomonas stygia, Sphingomonadaceae 

AY500142, Novosphingobium taihuense, Sphingomonadaceae 

CP000248, Sphingomonas aromaticivorans, Sphingomonadaceae 

AB025014, Sphingomonas subterranea, Sphingomonadaceae 

D16147, Sphingomonas capsulata, Sphingomonadaceae 

EU336977, Novosphingobium acidiphilum, Sphingomonadaceae 

D13945, Sphingomonas rosa, Sphingomonadaceae 

FJ177534, Novosphingobium sediminicola, Sphingomonadaceae 

AB177883, Novosphingobium naphthalenivorans, Sphingomonadaceae 

EF029110, Novosphingobium resinovorum, Sphingomonadaceae 

FJ425737, Novosphingobium soli, Sphingomonadaceae 

D13727, Sphingomonas terrae, Sphingomonadaceae 

EF424391, Sphingopyxis ummariensis, Sphingomonadaceae 

D13722, Sphingomonas adhaesiva, Sphingomonadaceae 

AY563034, Sphingopyxis granuli, Sphingomonadaceae 

EU075217, Sphingopyxis panaciterrulae, Sphingomonadaceae 

AJ416410, Sphingopyxis witflariensis, Sphingomonadaceae 

AB245353, Sphingopyxis panaciterrae, Sphingomonadaceae 

AF367204, Sphingopyxis chilensis, Sphingomonadaceae 

GQ131578, Sphingopyxis bauzanensis, Sphingomonadaceae 

FJ599671, Sphingopyxis soli, Sphingomonadaceae 

AF131297, Sphingopyxis taejonensis, Sphingomonadaceae 

AB245343, Sphingopyxis ginsengisoli, Sphingomonadaceae 

D13723, Sphingomonas macrogoltabidus, Sphingomonadaceae 

Z73631, Sphingopyxis alaskensis, Sphingomonadaceae 

DQ781321, Sphingopyxis litoris, Sphingomonadaceae 

DQ781320, Sphingopyxis marina, Sphingomonadaceae 

AY554010, Sphingopyxis flavimaris, Sphingomonadaceae 

AY608604, Sphingopyxis baekryungensis, Sphingomonadaceae 

HM028673, Altererythrobacter xinjiangensis, Erythrobacteraceae 

GU166344, Altererythrobacter dongtanensis, Erythrobacteraceae 

EF623998, Croceicoccus marinus, type sp., Erythrobacteraceae 

AF502400, Novosphingobium pentaromativorans, Sphingomonadaceae 

EF424403, Novosphingobium mathurense, Sphingomonadaceae 

EF424402, Novosphingobium panipatense, Sphingomonadaceae 

EF549586, Novosphingobium indicum, Sphingomonadaceae 

Erythrobacteraceae (24) 

AY562219, Erythrobacter seohaensis, Erythrobacteraceae 

EU428782, Erythrobacter gangjinensis, Erythrobacteraceae 

AF118020, Erythrobacter citreus, Erythrobacteraceae 

HQ203045, Erythrobacter pelagi, Erythrobacteraceae 

AY461441, Erythrobacter aquimaris, Erythrobacteraceae 

AF465835, Erythrobacter longus, type sp., Erythrobacteraceae 

FJ654473, Erythrobacter nanhaisediminis, Erythrobacteraceae 

AY706935, Erythrobacter vulgaris, Erythrobacteraceae 

AF500004, Erythrobacter flavus, Erythrobacteraceae 

AY562220, Erythrobacter gaetbuli, Erythrobacteraceae 

AB021493, Porphyrobacter sanguineus, Erythrobacteraceae 

AB033328, Porphyrobacter tepidarius, Erythrobacteraceae 

AB033327, Porphyrobacter neustonensis, type sp., Erythrobacteraceae 

AF465834, Porphyrobacter cryptus, Erythrobacteraceae 

DQ011529, Porphyrobacter dokdonensis, Erythrobacteraceae 

AY559428, Porphyrobacter donghaensis, Erythrobacteraceae 

AF465837, Erythromicrobium ramosum, type sp., Erythrobacteraceae 

AF465836, Erythrobacter litoralis, Erythrobacteraceae 

EU726272, Altererythrobacter marinus, Erythrobacteraceae 

FM177586, Altererythrobacter marensis, Erythrobacteraceae 

DQ399262, Altererythrobacter indicus, Erythrobacteraceae 

AB363004, Altererythrobacter ishigakiensis, Erythrobacteraceae 

AY739662, Altererythrobacter luteolus, Erythrobacteraceae 

DQ304436, Altererythrobacter epoxidivorans, type sp., Erythrobacteraceae 

FJ997597, Altererythrobacter aestuarii, Erythrobacteraceae 

FJ935793, Altererythrobacter namhicola, Erythrobacteraceae 

Kordiimonadales (2) 

AY682384, Kordiimonas gwangyangensis, type sp., Kordiimonadaceae 

FJ847942, Kordiimonas lacus, Kordiimonadaceae 

D14431, Rhodothalassium salexigens, type sp., Rhodobacteraceae 

Sneathiellales (2) 

DQ219355, Sneathiella chinensis, type sp., Sneathiellaceae 

AB289439, Sneathiella glossodoripedis, Sneathiellaceae 

Rickettsiales (27) 

Rickettsiaceae (20) 

U17645, Rickettsia honei, Rickettsiaceae 

L36217, Rickettsia rickettsii, Rickettsiaceae 

D38628, Rickettsia sibirica, Rickettsiaceae 

AF541999, Rickettsia conorii, Rickettsiaceae 

L36673, Rickettsia parkeri, Rickettsiaceae 

AF178037, Rickettsia heilongjiangensis, Rickettsiaceae 

DQ365810, Rickettsia raoultii, Rickettsiaceae 

AF394906, Rickettsia asiatica, Rickettsiaceae 

U74757, Rickettsia aeschlimannii, Rickettsiaceae 

L36216, Rickettsia rhipicephali, Rickettsiaceae 

L36215, Rickettsia montanensis, Rickettsiaceae 

AY049981, Rickettsia tamurae, Rickettsiaceae 

L36214, Rickettsia massiliae, Rickettsiaceae 

M21789, Rickettsia prowazekii, type sp., Rickettsiaceae 

U12463, Rickettsia typhi, Rickettsiaceae 

L36099, Rickettsia akari , Rickettsiaceae 

L36101, Rickettsia australis, Rickettsiaceae 

L36104, Rickettsia canadensis, Rickettsiaceae 

L36103, Rickettsia bellii, Rickettsiaceae 

D38623, Orientia tsutsugamushi, type sp., Rickettsiaceae 

Anaplasmataceae (7) 

Rhodospirillaceae (23) 

M73222, Ehrlichia chaffeensis, Anaplasmataceae 

U15527, Ehrlichia muris, Anaplasmataceae 

M73227, Ehrlichia ewingii, Anaplasmataceae 

X61659, Ehrlichia ruminantium, Anaplasmataceae 

U02521, Anaplasma phagocytophilum, Anaplasmataceae 

M21290, Neorickettsia risticii, Anaplasmataceae 

M73219, Neorickettsia sennetsu, Anaplasmataceae 

AM283537, Roseospira goensis, Rhodospirillaceae 

AJ298879, Roseospira marina, Rhodospirillaceae 

AM282560, Roseospira visakhapatnamensis, Rhodospirillaceae 

AJ298880, Roseospira navarrensis, Rhodospirillaceae

X99671, Rhodospira trueperi, type sp., Rhodospirillaceae 

AJ222662, Rhodospirillum photometricum, Rhodospirillaceae 

AM710622, Rhodospirillum sulfurexigens, Rhodospirillaceae 

CP000230, Rhodospirillum rubrum, type sp., Rhodospirillaceae 

FN391894, Phaeovibrio sulfidiphilus, type sp., Rhodospirillaceae 

AY189753, Thalassospira xiamenensis, Rhodospirillaceae 

EU017546, Thalassospira xianhensis, Rhodospirillaceae 

AF358664, Thalassospira lucentensis, type sp., Rhodospirillaceae 

AY186195, Thalassospira profundimaris, Rhodospirillaceae 

AB265822, Thalassospira tepidiphila, Rhodospirillaceae 

AB006768, Terasakiella pusilla, type sp., Methylocystaceae 

EF612767, Insolitispirillum peregrinum subsp. peregrinum, type sp., Rhodospirillaceae 

EF612768, Insolitispirillum peregrinum subsp. integrum, Rhodospirillaceae 

EU642410, Marispirillum indicum, type sp., Rhodospirillaceae 

AB074520, Novispirillum itersonii subsp. nipponicum, Rhodospirillaceae 

EF612765, Novispirillum itersonii subsp. itersonii, type sp., Rhodospirillaceae 

EF100694, Caenispirillum bisanense, type sp., Rhodospirillaceae 

FN995238, Caenispirillum salinarum, Rhodospirillaceae 

AJ011919, Roseospirillum parvum, type sp., Rhodobiaceae 

D14432, Rhodovibrio salinarum, type sp., Rhodospirillaceae 

FR733704, Rhodovibrio sodomensis, Rhodospirillaceae 

FJ357426, Fodinicurvata sediminis, type sp., Rhodospirillaceae 

FJ357427, Fodinicurvata fenggangensis, Rhodospirillaceae 

EU728658, Tistlia consotensis, type sp., Rhodospirillaceae 

DQ401091, Pelagibius litoralis, type sp., Rhodospirillaceae 

AM749667, Kiloniella laminariae, type sp., Kiloniellaceae 

AB071665, Tistrella mobilis, type sp., Rhodospirillaceae 

GQ240228, Tistrella bauzanensis, Rhodospirillaceae 

Acetobacteraceae (109) 

AB602333, Acetobacter farinalis, Acetobacteraceae 

AB032350, Acetobacter orleanensis, Acetobacteraceae 

AJ419844, Acetobacter malorum, Acetobacteraceae 

AJ419843, Acetobacter cerevisiae, Acetobacteraceae 

AY883036, Acetobacter senegalensis, Acetobacteraceae 

AB032355, Acetobacter tropicalis, Acetobacteraceae 

AB052710, Acetobacter cibinongensis, Acetobacteraceae 

AB052706, Acetobacter orientalis, Acetobacteraceae 

AB032356, Acetobacter indonesiensis, Acetobacteraceae 

X74066, Acetobacter aceti, type sp., Acetobacteraceae 

AY669513, Acetobacter nitrogenifigens, Acetobacteraceae 

AY829472, Acetobacter oeni, Acetobacteraceae 

AJ419838, Acetobacter estunensis, Acetobacteraceae 

AM905849, Acetobacter fabarum, Acetobacteraceae 

AB032351, Acetobacter lovaniensis, Acetobacteraceae 

EF030713, Acetobacter ghanensis, Acetobacteraceae 

AB052712, Acetobacter syzygii, Acetobacteraceae 

X71863, Acetobacter pasteurianus subsp. pasteurianus, Acetobacteraceae 

GU205100, Acetobacter pasteurianus subsp. paradoxus, Acetobacteraceae 

AJ419835, Acetobacter pomorum, Acetobacteraceae 

AB032352, Acetobacter peroxydans, Acetobacteraceae 

AB178392, Gluconobacter albidus, Acetobacteraceae 

AB178431, Gluconobacter sphaericus, Acetobacteraceae 

AB459530, Gluconobacter kanchanaburiensis, Acetobacteraceae 

AB178405, Gluconobacter kondonii, Acetobacteraceae 

X73820, Gluconobacter oxydans, type sp., Acetobacteraceae 

AB178429, Gluconobacter roseus, Acetobacteraceae 

AB193244, Gluconobacter uchimurae, Acetobacteraceae 

X82290, Gluconobacter frateurii, Acetobacteraceae 

AB511060, Gluconobacter wancherniae, Acetobacteraceae 

AB253435, Gluconobacter japonicus, Acetobacteraceae 

AB128050, Gluconobacter thailandicus, Acetobacteraceae 

AB540148, Gluconobacter nephelii, Acetobacteraceae 

AB178406, Gluconobacter cerinus, Acetobacteraceae 

AB513363, Neokomagataea thailandica, type sp., Acetobacteraceae 

AB513364, Neokomagataea tanensis, Acetobacteraceae 

AB110421, Saccharibacter floricola, type sp., Acetobacteraceae 

AB303366, Ameyamaea chiangmaiensis, type sp., Acetobacteraceae 

AB304087, Tanticharoenia sakaeratensis, type sp., Acetobacteraceae 

AB485740, Asaia astilbis, Acetobacteraceae 

AB485741, Asaia prunellae, Acetobacteraceae 

AB485739, Asaia platycodi, Acetobacteraceae 

AB511277, Asaia spathodeae, Acetobacteraceae 

AB035416, Asaia siamensis, Acetobacteraceae 

AB025928, Asaia bogorensis, type sp., Acetobacteraceae 

AB102953, Asaia krungthepensis, Acetobacteraceae 

AB286050, Asaia lannensis, Acetobacteraceae 

AF459454, Swaminathania salitolerans, type sp., Acetobacteraceae 

AB056321, Kozakia baliensis, type sp., Acetobacteraceae 

AB208549, Neoasaia chiangmaiensis, type sp., Acetobacteraceae 

X77468, Acidomonas methanolica, type sp., Acetobacteraceae 

X75617, Gluconacetobacter liquefaciens, type sp., Acetobacteraceae 

AF127407, Gluconacetobacter sacchari, Acetobacteraceae 

AB627116, Gluconacetobacter tumulicola, Acetobacteraceae 

AB627120, Gluconacetobacter asukensis, Acetobacteraceae 

X75618, Gluconacetobacter diazotrophicus, Acetobacteraceae 

AF192761, Gluconacetobacter azotocaptans, Acetobacteraceae 

AF111841, Gluconacetobacter johannae, Acetobacteraceae 

AB205221, Gluconacetobacter oboediens, Acetobacteraceae 

AY180961, Gluconacetobacter rhaeticus, Acetobacteraceae 

Y14694, Gluconacetobacter intermedius, Acetobacteraceae 

AB607833, Gluconacetobacter kakiaceti, Acetobacteraceae 

AB166743, Gluconacetobacter nataicola, Acetobacteraceae 

Z21936, Gluconacetobacter europaeus, Acetobacteraceae 

AY180960, Gluconacetobacter swingsii, Acetobacteraceae 

AJ012466, Gluconacetobacter saccharivorans, Acetobacteraceae 

AJ007698, Gluconacetobacter sucrofermentans, Acetobacteraceae 

X75619, Gluconacetobacter xylinus, Acetobacteraceae 

X75620, Gluconacetobacter hansenii, Acetobacteraceae 

AY688433, Gluconacetobacter kombuchae, Acetobacteraceae 

AJ251110, Gluconacetobacter entanii, Acetobacteraceae 

AY788950, Granulibacter bethesdensis, type sp., Acetobacteraceae 

D86513, Rhodopila globiformis, type sp., Acetobacteraceae 

D30772, Acidiphilium angustum, Acetobacteraceae 

D30776, Acidiphilium rubrum, Acetobacteraceae 

D86511, Acidiphilium acidophilum, Acetobacteraceae 

D30773, Acidiphilium cryptum, type sp., Acetobacteraceae 

D30775, Acidiphilium organovorum, Acetobacteraceae 

AB006711, Acidiphilium multivorum, Acetobacteraceae 

AB362219, Acidocella aluminiidurans, Acetobacteraceae 

D30774, Acidocella facilis, type sp., Acetobacteraceae 

D30771, Acidocella aminolytica, Acetobacteraceae 

AM947653, Acidisoma sibiricum, Acetobacteraceae

AM947652, Acidisoma tundrae, type sp., Acetobacteraceae 

AY140238, Acidicaldus organivorans, type sp., Acetobacteraceae 

D86512, Acidisphaera rubrifaciens, type sp., Acetobacteraceae 

AY150047, Roseomonas cervicalis, Acetobacteraceae 

AJ488504, Roseomonas ludipueritiae, Acetobacteraceae 

FM244739, Roseomonas aestuarii, Acetobacteraceae 

AJ786000, Roseomonas lacus, Acetobacteraceae 

EF363716, Roseomonas terrae, Acetobacteraceae 

EU290160, Roseomonas frigidaquae, Acetobacteraceae 

AB369258, Roseomonas stagni, Acetobacteraceae 

AM231587, Roseomonas aquatica, Acetobacteraceae 

AJ488505, Roseomonas rosea, Acetobacteraceae 

EF661571, Roseomonas aerilata, Acetobacteraceae 

EF368368, Roseomonas vinacea, Acetobacteraceae 

GU168019, Roseomonas pecuniae, Acetobacteraceae 

AY220740, Roseomonas gilardii subsp. rosea, Acetobacteraceae 

AF538712, Roseomonas mucosa, Acetobacteraceae 

AY150045, Roseomonas gilardii subsp. gilardii, type sp., Acetobacteraceae 

AJ871428, Belnapia moabensis, type sp., Acetobacteraceae 

HQ641379, Belnapia rosea, Acetobacteraceae 

D85828, Craurococcus roseus, type sp., Acetobacteraceae 

D85827, Paracraurococcus ruber, type sp., Acetobacteraceae 

AJ633644, Rhodovarius lipocyclicus, type sp., Acetobacteraceae 

EU012448, Roseococcus suduntuyensis, Acetobacteraceae 

X72908, Roseococcus thiosulfatophilus, type sp., Acetobacteraceae 

AF465832, Rubritepida flocculans, type sp., Acetobacteraceae 

EF519867, Elioraea tepidiphila, type sp., Unclassified Rhodospirillales 

AF179678, Defluviicoccus vanus, type sp., Rhodospirillaceae 

DQ022958, Azospirillum melinis, Rhodospirillaceae 

AB185396, Azospirillum oryzae, Rhodospirillaceae 

Z29619, Azospirillum lipoferum, type sp., Rhodospirillaceae 

DQ682470, Azospirillum zeae, Rhodospirillaceae 

AJ238567, Azospirillum doebereinerae, Rhodospirillaceae 

EU678791, Azospirillum thiophilum, Rhodospirillaceae 

AM922283, Azospirillum picis, Rhodospirillaceae 

GU256444, Azospirillum formosense, Rhodospirillaceae 

AY324110, Azospirillum brasilense, Rhodospirillaceae 

DQ393891, Azospirillum canadense, Rhodospirillaceae 

AM419042, Azospirillum rugosum, Rhodospirillaceae 

X79731, Azospirillum halopraeferens, Rhodospirillaceae 

EU678309, Elstera litoralis, type sp., Rhodospirillaceae 

DQ672568, Skermanella aerolata, Rhodospirillaceae 

X90760, Skermanella parooensis, type sp., Rhodospirillaceae 

HQ315828, Skermanella stibiiresistens, Rhodospirillaceae 

EU833987, Desertibacter roseus, type sp., Rhodospirillaceae 

EU586202, Skermanella xinjiangensis, Rhodospirillaceae 

D12701, Rhodocista centenaria, type sp., Rhodospirillaceae 

AF523824, Rhodocista pekingensis, Rhodospirillaceae 

Z29583, Azospirillum irakense, Rhodospirillaceae 

GU256437, Azospirillum amazonense, Rhodospirillaceae 

X71837, Caedibacter caryophilus, Unclassified Thiotrichales 

AB510913, Constrictibacter antarcticus, type sp., Rhodospirillaceae 

AJ535710, Stella humosa, type sp., Acetobacteraceae 

AJ535711, Stella vacuolata, Acetobacteraceae 

AB245352, Inquilinus ginsengisoli, Rhodospirillaceae 

AY043374, Inquilinus limosus, type sp., Rhodospirillaceae 

DQ665838, Nisaea denitrificans, type sp., Rhodospirillaceae 

DQ665839, Nisaea nitritireducens, Rhodospirillaceae 

EU008565, Thalassobaculum salexigens, Rhodospirillaceae 

EF203900, Thalassobaculum litoreum, type sp., Rhodospirillaceae 

EU656113, Oceanibaculum indicum, type sp., Rhodospirillaceae 

FJ463255, Oceanibaculum pacificum, Rhodospirillaceae 

EF394922, Reyranella massiliensis, type sp., Unclassified Rhodospirillales 

FJ455532, Dongia mobilis, type sp., Rhodospirillaceae 

AM779061, Phaeospirillum chandramohanii, Rhodospirillaceae 

AM901294, Phaeospirillum oryzae, Rhodospirillaceae 

D14433, Phaeospirillum fulvum, type sp., Rhodospirillaceae 

FR733695, Phaeospirillum molischianum, Rhodospirillaceae 

FN675262, Phaeospirillum tilakii, Rhodospirillaceae 

FJ562215, Aquaspirillum polymorphum, Neisseriaceae 

Y10109, Magnetospirillum gryphiswaldense, type sp., Rhodospirillaceae 

Y10110, Magnetospirillum magnetotacticum, Rhodospirillaceae 

AF524863, Telmatospirillum siberiense, type sp., Rhodospirillaceae 

EF493243, Mariprofundus ferrooxydans, type sp., Mariprofundaceae 

Spirochaetes (82) 

Spirochaetaceae (55) 

AF033306, Treponema socranskii subsp. socranskii, Spirochaetaceae 

AF033305, Treponema socranskii subsp. buccale, Spirochaetaceae 

AF033307, Treponema socranskii subsp. paredis, Spirochaetaceae 

Y09959, Treponema amylovorum, Spirochaetaceae 

AF302937, Treponema parvum, Spirochaetaceae 

AY518274, Treponema porcinum, Spirochaetaceae 

M57738, Treponema succinifaciens, Spirochaetaceae 

FR749895, Treponema bryantii, Spirochaetaceae 

AY230217, Treponema berlinense, Spirochaetaceae 

GU562449, Treponema pectinovorum, Spirochaetaceae 

M71238, Treponema saccharophilum, Spirochaetaceae 

Y16568, Treponema brennaborense, Spirochaetaceae 

X87139, Treponema lecithinolyticum, Spirochaetaceae 

X87140, Treponema maltophilum, Spirochaetaceae 

AF139203, Treponema denticola, Spirochaetaceae 

AJ543428, Treponema putidum, Spirochaetaceae 

EF061268, Treponema pedis, Spirochaetaceae 

D85437, Treponema medium, Spirochaetaceae 

FR749929, Spirochaeta zuelzerae, Spirochaetaceae 

AF320287, Treponema azotonutricium, Spirochaetaceae 

AF093252, Treponema primitia, Spirochaetaceae 

AM182455, Treponema isoptericolens, Spirochaetaceae 

EU580141, Spirochaeta caldaria, Spirochaetaceae 

FR733664, Spirochaeta stenostrepta, Spirochaetaceae 

X93926, Spirochaeta asiatica, Spirochaetaceae 

AY995150, Spirochaeta dissipatitropha, Spirochaetaceae 

X93928, Spirochaeta africana, Spirochaetaceae 

X93927, Spirochaeta alkalica, Spirochaetaceae 

AF373921, Spirochaeta americana, Spirochaetaceae 

M88722, Spirochaeta halophila, Spirochaetaceae 

AF357916, Sphaerochaeta globosa, type sp., Spirochaetaceae 

AF357917, Sphaerochaeta pleomorpha, Spirochaetaceae 

AJ698092, Spirochaeta coccoides, Spirochaetaceae 

FR749903, Spirochaeta thermophila, Spirochaetaceae 

AJ698859, Spirochaeta bajacaliforniensis, Spirochaetaceae

Leptospiraceae (18) 

U80597, Spirochaeta smaragdinae, Spirochaetaceae 

M59293, Borrelia burgdorferi, Spirochaetaceae 

EU085407, Borrelia carolinensis, Spirochaetaceae 

L40597, Borrelia japonica, Spirochaetaceae 

AB022101, Borrelia sinica, Spirochaetaceae 

D67018, Borrelia garinii, Spirochaetaceae 

X98228, Borrelia lusitaniae, Spirochaetaceae 

EU081285, Borrelia americana, Spirochaetaceae 

D67022, Borrelia turdi, Spirochaetaceae 

X98232, Borrelia valaisiana, Spirochaetaceae 

FR733687, Borrelia afzelii, Spirochaetaceae 

D67023, Borrelia tanukii, Spirochaetaceae 

U42286, Borrelia coriaceae, Spirochaetaceae 

D45192, Borrelia miyamotoi, Spirochaetaceae 

AB111849, Borrelia turcica, Spirochaetaceae 

FR749896, Spirochaeta aurantia subsp. aurantia, Spirochaetaceae 

FR749931, Spirochaeta isovalerica, Spirochaetaceae 

AY337318, Spirochaeta perfilievii, Spirochaetaceae 

FR733665, Spirochaeta litoralis, Spirochaetaceae 

EU448140, Spirochaeta cellobiosiphila, Spirochaetaceae 

AB364473, Exilispira thermophila, type sp., Unclassified Spirochaetales 

Brachyspiraceae (7) 

EF455559, Brachyspira alvinipulli, Brachyspiraceae 

AY155458, Brachyspira pilosicoli, Brachyspiraceae 

U23033, Brachyspira intermedia, Brachyspiraceae 

U14930, Brachyspira hyodysenteriae, Brachyspiraceae 

U14920, Brachyspira innocens, Brachyspiraceae 

AY312492, Brachyspira murdochii, Brachyspiraceae 

Z22781, Brachyspira aalborgi, type sp., Brachyspiraceae 

GU993264, Brevinema andersonii, type sp., Brevinemataceae 

AY887899, Leptospira borgpetersenii , Leptospiraceae 

AY631883, Leptospira santarosai, Leptospiraceae 

AY631877, Leptospira weilii , Leptospiraceae 

AY631880, Leptospira alexanderi, Leptospiraceae 

Z12817, Leptospira interrogans, type sp., Leptospiraceae 

AY631895, Leptospira kirschneri , Leptospiraceae 

AY631886, Leptospira noguchii , Leptospiraceae 

AB279549, Leptospira kmetyi, Leptospiraceae 

AY796065, Leptospira broomii, Leptospiraceae 

AY631885, Leptospira fainei, Leptospiraceae 

EF612284, Leptospira licerasiae, Leptospiraceae 

EF025496, Leptospira wolffii, Leptospiraceae 

Z21634, Leptospira inadai, Leptospiraceae 

AY631876, Leptospira biflexa , Leptospiraceae 

AY631878, Leptospira meyeri , Leptospiraceae 

AY631879, Leptospira wolbachii , Leptospiraceae 

AY714984, Leptonema illini, type sp., Leptospiraceae 

AY293856, Turneriella parva, type sp., Leptospiraceae 

Fusobacteria (38) 

Fusobacteriaceae (28) 

Deferribacteres (10) 

X55406, Filifactor alocis, Peptostreptococcaceae 

X55404, Fusobacterium nucleatum subsp. animalis, Fusobacteriaceae 

M58685, Fusobacterium simiae, Fusobacteriaceae 

AE009951, Fusobacterium nucleatum subsp. nucleatum, type sp., Fusobacteriaceae 

X55403, Fusobacterium nucleatum subsp. fusiforme, Fusobacteriaceae 

AABF01000111, Fusobacterium nucleatum subsp. vincentii , Fusobacteriaceae 

AY162221, Fusobacterium canifelinum, Fusobacteriaceae 

X55405, Fusobacterium periodonticum, Fusobacteriaceae 

AF287812, Fusobacterium nucleatum subsp. polymorphum, Fusobacteriaceae 

M58681, Fusobacterium russii, Fusobacteriaceae 

AJ867039, Fusobacterium necrophorum subsp. necrophorum, Fusobacteriaceae 

AB525413, Fusobacterium necrophorum subsp. funduliforme, Fusobacteriaceae 

AJ295750, Fusobacterium equinum, Fusobacteriaceae 

X55410, Fusobacterium gonidiaformans, Fusobacteriaceae 

X55412, Fusobacterium ulcerans, Fusobacteriaceae 

AJ867036, Fusobacterium varium, Fusobacteriaceae 

X77850, Clostridium rectum, Clostridiaceae 

AJ867032, Fusobacterium mortiferum, Fusobacteriaceae 

AJ867034, Fusobacterium necrogenes, Fusobacteriaceae 

M58684, Fusobacterium perfoetens, Fusobacteriaceae 

AJ438155, Cetobacterium somerae, Fusobacteriaceae 

X78419, Cetobacterium ceti, type sp., Fusobacteriaceae 

AJ307980, Ilyobacter insuetus, Fusobacteriaceae 

X54275, Propionigenium modestum, type sp., Fusobacteriaceae 

CP002281, Ilyobacter polytropus, type sp., Fusobacteriaceae 

X84049, Propionigenium maris, Fusobacteriaceae 

AJ307982, Ilyobacter tartaricus, Fusobacteriaceae 

AY579753, Psychrilyobacter atlanticus, type sp., Fusobacteriaceae 

Leptotrichiaceae (10) 

EU919515, Leptotrichia hongkongensis, Leptotrichiaceae 

AF206305, Leptotrichia trevisanii, Leptotrichiaceae 

AY029806, Leptotrichia shahii, Leptotrichiaceae 

AY029802, Leptotrichia wadei, Leptotrichiaceae 

CP001685, Leptotrichia buccalis, type sp., Leptotrichiaceae 

AY029803, Leptotrichia hofstadii, Leptotrichiaceae 

AY029807, Leptotrichia goodfellowii, Leptotrichiaceae 

CP001739, Sebaldella termitidis, type sp., Leptotrichiaceae 

CP001779, Streptobacillus moniliformis, type sp., Leptotrichiaceae 

AJ344093, Sneathia sanguinegens, type sp., Leptotrichiaceae 

AB529679, Armatimonas rosea, type sp., Armatimonadaceae 

AM749780, Chthonomonas calidirosea, type.sp, Chthonomonadaceae 

AM490846, Elusimicrobium minutum, type sp., Elusimicrobiaceae 

X95744, Geovibrio ferrireducens, type sp., Deferribacteraceae 

AJ299402, Geovibrio thiophilus, Deferribacteraceae 

AF146526, Denitrovibrio acetiphilus, type sp., Deferribacteraceae 

AY387670, Mucispirillum schaedleri, type sp., Deferribacteraceae 

AB364234, Calditerrivibrio nitroreducens, type sp., Deferribacteraceae 

AJ515882, Deferribacter abyssi, Deferribacteraceae 

EU407777, Deferribacter autotrophicus, Deferribacteraceae 

AB086060, Deferribacter desulfuricans, Deferribacteraceae 

U75602, Deferribacter thermophilus, type sp., Deferribacteraceae 

M59231, Flexistipes sinusarabici, type sp., Deferribacteraceae

Acidobacteria (17) 

Chrysiogenetes (4) 

DQ991965, Desulfurispirillum indicum, Chrysiogenaceae 

DQ666683, Desulfurispirillum alkaliphilum, type sp., Chrysiogenaceae 

GQ922842, Desulfurispira natronophila, type sp., Chrysiogenaceae 

X81319, Chrysiogenes arsenatis, type sp., Chrysiogenaceae 

AM887756, Granulicella aggregans, Acidobacteriaceae 

AM887759, Granulicella rosea, Acidobacteriaceae 

AM887757, Granulicella pectinivorans, Acidobacteriaceae 

AM887758, Granulicella paludicola, type sp., Acidobacteriaceae 

DQ660892, Terriglobus roseus, type sp., Acidobacteriaceae 

HM214537, Terriglobus saanensis, Acidobacteriaceae 

DQ528761, Edaphobacter aggregans, Acidobacteriaceae 

DQ528760, Edaphobacter modestus, type sp., Acidobacteriaceae 

FR666706, Bryocella elongata, type sp., Acidobacteriaceae 

FR774763, Acidicapsa borealis, type sp., Acidobacteriaceae 

EU780204, Acidicapsa ligni, Acidobacteriaceae 

AM887760, Telmatobacter bradus, type sp., Acidobacteriaceae 

CP001472, Acidobacterium capsulatum, type sp., Acidobacteriaceae 

AM162405, Bryobacter aggregatus, type sp., Unclassified Acidobacteria 

U41563, Geothrix fermentans, type sp., Holophagaceae 

X77215, Holophaga foetida, type sp., Holophagaceae 

AB303221, Acanthopleuribacter pedis, type sp., Acanthopleuribacteraceae 

Epsilonproteobacteria (97) 

Campylobacterales (87) 

Campylobacteraceae (48) 

U03022, Campylobacter helveticus, Campylobacteraceae 

DQ174157, Campylobacter upsaliensis, Campylobacteraceae 

EU623473, Campylobacter avium, Campylobacteraceae 

DQ400345, Campylobacter cuniculorum, Campylobacteraceae 

EF621894, Campylobacter canadensis, Campylobacteraceae 

AM922331, Campylobacter peloridis, Campylobacteraceae 

AY621114, Campylobacter lari subsp. lari, Campylobacteraceae 

FM883694, Campylobacter volucris, Campylobacteraceae 

AM933371, Campylobacter subantarcticus, Campylobacteraceae 

AM922330, Campylobacter lari subsp. concheus, Campylobacteraceae 

DQ174183, Campylobacter insulaenigrae, Campylobacteraceae 

DQ174144, Campylobacter jejuni subsp. doylei, Campylobacteraceae 

AF372091, Campylobacter jejuni subsp. jejuni, Campylobacteraceae 

AF372092, Campylobacter coli, Campylobacteraceae 

AF097685, Campylobacter hyointestinalis subsp. lawsonii, Campylobacteraceae 

AF043425, Campylobacter lanienae, Campylobacteraceae 

AF097689, Campylobacter hyointestinalis subsp. hyointestinalis, Campylobacteraceae 

DQ174131, Campylobacter fetus subsp. venerealis, Campylobacteraceae 

DQ174127, Campylobacter fetus subsp. fetus, type sp., Campylobacteraceae 

DQ174173, Campylobacter mucosalis, Campylobacteraceae 

L04321, Campylobacter ureolyticus, Campylobacteraceae 

AJ251584, Campylobacter hominis, Campylobacteraceae 

DQ174168, Campylobacter gracilis, Campylobacteraceae 

X67775, Campylobacter sputorum subsp. sputorum, Campylobacteraceae 

DQ174151, Campylobacter sputorum subsp. bubulus, Campylobacteraceae 

DQ174169, Campylobacter rectus, Campylobacteraceae 

DQ174155, Campylobacter showae, Campylobacteraceae 

DQ174165, Campylobacter curvus, Campylobacteraceae 

DQ174166, Campylobacter concisus, Campylobacteraceae 

U85964, Sulfurospirillum arsenophilum, Campylobacteraceae 

AF218076, Sulfurospirillum halorespirans, Campylobacteraceae 

X82931, Sulfurospirillum multivorans, Campylobacteraceae 

AF038843, Sulfurospirillum barnesii, Campylobacteraceae 

Y13671, Sulfurospirillum deleyianum, type sp., Campylobacteraceae 

AB246781, Sulfurospirillum cavolei, Campylobacteraceae 

Y11561, Sulfurospirillum arcachonense, Campylobacteraceae 

AY314753, Arcobacter thereius, Campylobacteraceae 

FN650333, Arcobacter trophiarum, Campylobacteraceae 

L14625, Arcobacter skirrowii, Campylobacteraceae 

L14624, Arcobacter cryaerophilus, Campylobacteraceae 

AJ607391, Arcobacter cibarius, Campylobacteraceae 

AY621116, Arcobacter butzleri, Campylobacteraceae 

HQ115595, Arcobacter defluvii, Campylobacteraceae 

L14627, Arcobacter nitrofigilis, type sp., Campylobacteraceae 

EU512920, Arcobacter marinus , Campylobacteraceae 

FR675874, Arcobacter molluscorum, Campylobacteraceae 

AF513455, Arcobacter halophilus, Campylobacteraceae 

EU669904, Arcobacter mytili, Campylobacteraceae 

Helicobacteraceae (33) 

Y09404, Helicobacter bizzozeronii, Helicobacteraceae 

DQ004689, Helicobacter cynogastricus, Helicobacteraceae 

U89351, Helicobacter salomonis, Helicobacteraceae 

M57398, Helicobacter felis, Helicobacteraceae 

EF070342, Helicobacter baculiformis, Helicobacteraceae 

HM625820, Helicobacter heilmannii, Helicobacteraceae 

EF204589, Helicobacter suis, Helicobacteraceae 

M88148, Helicobacter acinonychis, Helicobacteraceae 

U01330, Helicobacter pylori, type sp., Helicobacteraceae 

AF292378, Helicobacter cetorum, Helicobacteraceae 

DQ415545, Helicobacter anseris, Helicobacteraceae 

M35048, Helicobacter mustelae, Helicobacteraceae 

DQ415546, Helicobacter brantae, Helicobacteraceae 

AY686606, Helicobacter cholecystus, Helicobacteraceae 

M88147, Helicobacter pametensis, Helicobacteraceae 

M88154, Helicobacter fennelliae, Helicobacteraceae 

U65103, Helicobacter trogontum, Helicobacteraceae 

AF333341, Helicobacter marmotae, Helicobacteraceae 

AY742307, Helicobacter mastomyrinus, Helicobacteraceae 

AF297868, Helicobacter aurati, Helicobacteraceae 

M80205, Helicobacter muridarum, Helicobacteraceae 

AF127912, Helicobacter typhlonius, Helicobacteraceae 

U07574, Helicobacter hepaticus, Helicobacteraceae 

DQ307735, Helicobacter equorum, Helicobacteraceae 

AY631956, Helicobacter pullorum, Helicobacteraceae 

AF262037, Helicobacter canadensis, Helicobacteraceae 

U18766, Helicobacter bilis, Helicobacteraceae 

M88150, Helicobacter cinaedi, Helicobacteraceae 

AY631945, Helicobacter canis, Helicobacteraceae 

AF000221, Helicobacter ganmani, Helicobacteraceae 

AF072471, Helicobacter mesocricetorum, Helicobacteraceae 

U96296, Helicobacter rodentium, Helicobacteraceae 

M88159, Wolinella succinogenes, type sp., Helicobacteraceae

AB088431, Sulfurimonas autotrophica, type sp., Helicobacteraceae 

CP000153, Sulfurimonas denitrificans, Helicobacteraceae 

AB252048, Sulfurimonas paralvinellae, Helicobacteraceae 

AB175500, Nitratifractor salsuginis, type sp., Nautiliaceae 

AB091292, Sulfurovum lithotrophicum, type sp., Helicobacteraceae 

AB105048, Hydrogenimonas thermophila, type sp., Hydrogenimonaceae 

AB175499, Nitratiruptor tergarcus, type sp., Nautiliaceae 

Nautiliaceae (9) 

AM937002, Nautilia abyssi, Nautiliaceae 

AF357197, Nautilia profundicola, Nautiliaceae 

AJ404370, Nautilia lithotrophica, type sp., Nautiliaceae 

FJ532475, Nautilia nitratireducens, Nautiliaceae 

AB167820, Lebetimonas acidiphila, type sp., Nautiliaceae 

AJ309655, Caminibacter hydrogeniphilus, type sp., Nautiliaceae 

AY691430, Caminibacter mediatlanticus, Nautiliaceae 

AJ535664, Caminibacter profundus, Nautiliaceae 

AB175498, Thioreductor micantisoli, type sp., Nautiliaceae 

Desulfurellaceae (7) 

Desulfovibrionales (88) 

Y16943, Desulfurella multipotens, Desulfurellaceae 

Y16942, Desulfurella propionica, Desulfurellaceae 

X72768, Desulfurella acetivorans, type sp., Desulfurellaceae 

Y16941, Desulfurella kamchatkensis, Desulfurellaceae 

Y18292, Hippea maritima, type sp., Desulfurellaceae 

FR754498, Hippea jasoniae, Desulfurellaceae 

FR754500, Hippea alviniae, Desulfurellaceae 

Desulfovibrionaceae (63) 

Y12254, Desulfovibrio intestinalis, Desulfovibrionaceae 

FR733678, Desulfovibrio simplex, Desulfovibrionaceae 

AF192153, Desulfovibrio desulfuricans subsp. desulfuricans, Desulfovibrionaceae 

AF192152, Desulfovibrio piger, Desulfovibrionaceae 

AJ867049, Bilophila wadsworthia, type sp., Desulfovibrionaceae 

L15739, Lawsonia intracellularis, type sp., Desulfovibrionaceae 

DQ122124, Desulfovibrio oxamicus, Desulfovibrionaceae 

X87409, Desulfovibrio termitidis, Desulfovibrionaceae 

Z24450, Desulfovibrio longreachensis, Desulfovibrionaceae 

AF418179, Desulfovibrio vulgaris, Desulfovibrionaceae 

X99501, Desulfovibrio cuneatus, Desulfovibrionaceae 

X99504, Desulfovibrio litoralis, Desulfovibrionaceae 

U32578, Desulfovibrio acrylicus, Desulfovibrionaceae 

FJ655909, Desulfovibrio desulfuricans subsp. aestuarii, Desulfovibrionaceae 

AB353727, Desulfovibrio marinisediminis, Desulfovibrionaceae 

AM418397, Desulfovibrio psychrotolerans, Desulfovibrionaceae 

Y11984, Desulfovibrio alaskensis, Desulfovibrionaceae 

X93994, Desulfovibrio vietnamensis, Desulfovibrionaceae 

Y09504, Desulfovibrio indonesiensis, Desulfovibrionaceae 

DQ365924, Desulfovibrio marinus, Desulfovibrionaceae 

U31080, Desulfovibrio gabonensis, Desulfovibrionaceae 

FR749898, Desulfovibrio giganteus, Desulfovibrionaceae 

DQ447183, Desulfovibrio gigas, Desulfovibrionaceae 

AY726757, Desulfovibrio paquesii, Desulfovibrionaceae 

AF230530, Desulfovibrio dechloracetivorans, Desulfovibrionaceae 

AB110541, Desulfovibrio portus, Desulfovibrionaceae 

FR733706, Desulfovibrio profundus, Desulfovibrionaceae 

HM852532, Desulfovibrio piezophilus, Desulfovibrionaceae 

X95230, Desulfovibrio aespoeensis, Desulfovibrionaceae 

EF577029, Desulfovibrio tunisiensis, Desulfovibrionaceae 

U48243, Desulfovibrio halophilus, Desulfovibrionaceae 

U33316, Desulfovibrio oxyclinae, Desulfovibrionaceae 

U53464, Desulfovibrio gracilis, Desulfovibrionaceae 

AY359867, Desulfovibrio longus, Desulfovibrionaceae 

DQ148944, Desulfovibrio ferrireducens, Desulfovibrionaceae 

DQ148943, Desulfovibrio frigidus, Desulfovibrionaceae 

AF458778, Desulfovibrio hydrothermalis, Desulfovibrionaceae 

CP001649, Desulfovibrio salexigens, Desulfovibrionaceae 

Y18049, Desulfovibrio zosterae, Desulfovibrionaceae 

AY359868, Desulfovibrio bastinii, Desulfovibrionaceae 

DQ296030, Desulfovibrio arcticus, Desulfovibrionaceae 

AJ582755, Desulfovibrio idahonensis, Desulfovibrionaceae 

AF227984, Desulfovibrio mexicanus, Desulfovibrionaceae 

AF067964, Desulfovibrio aminophilus, Desulfovibrionaceae 

DQ422859, Desulfovibrio bizertensis, Desulfovibrionaceae 

HQ697913, Desulfobaculum xiamenensis, type sp., Desulfovibrionaceae 

AF050100, Desulfovibrio senezii, Desulfovibrionaceae 

DQ841177, Desulfocurvus vexinensis, type sp., Desulfovibrionaceae 

AY649785, Desulfovibrio alkalitolerans, Desulfovibrionaceae 

AY626035, Desulfovibrio carbinolicus, Desulfovibrionaceae 

D43944, Desulfovibrio magneticus, Desulfovibrionaceae 

AF053752, Desulfovibrio burkinensis, Desulfovibrionaceae 

AY746987, Desulfovibrio aerotolerans, Desulfovibrionaceae 

DQ186200, Desulfovibrio carbinoliphilus, Desulfovibrionaceae 

AF050101, Desulfovibrio fructosivorans, Desulfovibrionaceae 

AM947130, Desulfovibrio marrakechensis, Desulfovibrionaceae 

AF053751, Desulfovibrio alcoholivorans, Desulfovibrionaceae 

Y17764, Desulfovibrio sulfodismutans, Desulfovibrionaceae 

AF177276, Desulfovibrio inopinatus, Desulfovibrionaceae 

AB303305, Desulfovibrio butyratiphilus , Desulfovibrionaceae 

AY574979, Desulfovibrio putealis, Desulfovibrionaceae 

EU659693, Desulfovibrio africanus subsp. uniflagellum, Desulfovibrionaceae 

X99236, Desulfovibrio africanus, Desulfovibrionaceae 

Desulfonatronaceae (5) 

AF418171, Desulfonatronum lacustre, type sp., Desulfonatronaceae 

AF373920, Desulfonatronum thiodismutans, Desulfonatronaceae 

FJ469577, Desulfonatronum thioautotrophicum, Desulfonatronaceae 

FJ469578, Desulfonatronum thiosulfatophilum, Desulfonatronaceae 

AY725424, Desulfonatronum cooperativum, Desulfonatronaceae 

Desulfomicrobiaceae (7) 

U64865, Desulfomicrobium apsheronum, Desulfomicrobiaceae 

AJ277886, Desulfomicrobium escambiense, Desulfomicrobiaceae 

AJ277897, Desulfomicrobium norvegicum, Desulfomicrobiaceae 

AJ237604, Desulfomicrobium macestii, Desulfomicrobiaceae 

AJ277894, Desulfomicrobium baculatum, type sp., Desulfomicrobiaceae 

AJ251623, Desulfomicrobium orale, Desulfomicrobiaceae 

AY464939, Desulfomicrobium thermophilum, Desulfomicrobiaceae 

Desulfohalobiaceae (13)

FJ194951, Desulfonauticus autotrophicus, Desulfohalobiaceae 

AF524933, Desulfonauticus submarinus, type sp., Desulfohalobiaceae 

X80922, Desulfothermus naphthae, type sp., Desulfohalobiaceae 

AB264617, Desulfothermus okinawensis, Desulfohalobiaceae 

DQ139408, Desulfovermiculus halophilus, type sp., Desulfohalobiaceae 

DQ067421, Desulfohalobium utahense, Desulfohalobiaceae 

X99235, Desulfohalobium retbaense, type sp., Desulfohalobiaceae 

GU196831, Desulfonatronovibrio magnus, Desulfohalobiaceae 

FJ469579, Desulfonatronovibrio thiodismutans, Desulfohalobiaceae 

X99234, Desulfonatronovibrio hydrogenovorans, type sp., Desulfohalobiaceae 

GQ922847, Desulfonatronovibrio halophilus, Desulfohalobiaceae 

EU296539, Desulfonatronospira delicata, Desulfohalobiaceae 

EU296537, Desulfonatronospira thiodismutans, type sp., Desulfohalobiaceae 

Deltaproteobacteria (152) 

Desulfobacteraceae (41) 

AJ277887, Desulfococcus biacutus, Desulfobacteraceae 

AF418173, Desulfococcus multivorans, type sp., Desulfobacteraceae 

U45989, Desulfonema magnum, Desulfobacteraceae 

U45990, Desulfonema limicola, type sp., Desulfobacteraceae 

DQ067422, Desulfosalsimonas propionicica, type sp., Desulfobacteraceae 

U45992, Desulfonema ishimotonii, Desulfobacteraceae 

Y17286, Desulfosarcina ovata, Desulfobacteraceae 

M34407, Desulfosarcina variabilis, type sp., Desulfobacteraceae 

AJ237603, Desulfosarcina cetonica, Desulfobacteraceae 

AY184360, Desulfatibacillum aliphaticivorans, type sp., Desulfobacteraceae 

AY493562, Desulfatibacillum alkenivorans, Desulfobacteraceae 

AJ237607, Desulfobacterium indolicum, type sp., Desulfobacteraceae 

DQ146482, Desulfatirhabdium butyrativorans, type sp., Desulfobacteraceae 

FR733666, Desulfobotulus sapovorans, type sp., Desulfobacteraceae 

FJ789839, Desulfobotulus sapovorans, type sp., Desulfobacteraceae 

FJ788523, Desulfobotulus alkaliphilus, Desulfobacteraceae 

AF022936, Desulfocella halophila, type sp., Desulfobacteraceae 

AF243334, Desulforegula conservatrix, type sp., Desulfobacteraceae 

DQ826724, Desulfatiferula olefinivorans, type sp., Desulfobacteraceae 

EF187256, Desulfoluna spongiiphila, Desulfobacteraceae 

AB110540, Desulfoluna butyratoxydans, type sp., Desulfobacteraceae 

AF099065, Desulfofrigus fragile, Desulfobacteraceae 

AF099064, Desulfofrigus oceanense, type sp., Desulfobacteraceae 

AF099063, Desulfofaba gelida, type sp., Desulfobacteraceae 

AF321820, Desulfofaba hansenii, Desulfobacteraceae 

AY268891, Desulfofaba fastidiosa, Desulfobacteraceae 

AF418175, Desulfobacter curvatus, Desulfobacteraceae 

AF418180, Desulfobacter postgatei, type sp., Desulfobacteraceae 

Y14745, Desulfobacter halotolerans, Desulfobacteraceae 

AJ441315, Desulfobacter latus, Desulfobacteraceae 

FR733673, Desulfobacter hydrogenophilus, Desulfobacteraceae 

U12254, Desulfobacter vibrioformis, Desulfobacteraceae 

X99637, Desulfospira joergensenii, type sp., Desulfobacteraceae 

AF418176, Desulfotignum balticum, type sp., Desulfobacteraceae 

EF207157, Desulfotignum toluenicum, Desulfobacteraceae 

AF420288, Desulfotignum phosphitoxidans, Desulfobacteraceae 

AJ237606, Desulfobacula phenolica, Desulfobacteraceae 

AJ441316, Desulfobacula toluolica, type sp., Desulfobacteraceae 

FR733668, Desulfobacterium niacini, Desulfobacteraceae 

AF418178, Desulfobacterium vacuolatum, Desulfobacteraceae 

AF418177, Desulfobacterium autotrophicum, Desulfobacteraceae 

Syntrophaceae (4) 

X85131, Syntrophus buswellii, type sp., Syntrophaceae 

X85132, Syntrophus gentianae, Syntrophaceae 

CP000252, Syntrophus aciditrophicus, Syntrophaceae 

AF126282, Smithella propionica, type sp., Syntrophaceae 

AJ292759, Bdellovibrio bacteriovorus, type sp., Bdellovibrionaceae 

Syntrophobacteraceae (11) 

X82874, Syntrophobacter fumaroxidans, Syntrophobacteraceae 

X82875, Syntrophobacter pfennigii, Syntrophobacteraceae 

X83274, Desulforhabdus amnigena, type sp., Syntrophobacteraceae 

AJ237605, Desulfovirga adipica, type sp., Syntrophobacteraceae 

X70905, Syntrophobacter wolinii, type sp., Syntrophobacteraceae 

AY651787, Syntrophobacter sulfatireducens, Syntrophobacteraceae 

FJ491989, Desulfosoma caldarium, type sp., Syntrophobacteraceae 

U25627, Thermodesulforhabdus norvegica, type sp., Syntrophobacteraceae 

L27426, Desulfacinum infernum, type sp., Syntrophobacteraceae 

AF170417, Desulfacinum hydrothermale, Syntrophobacteraceae 

DQ303457, Desulfoglaeba alkanexedens, type sp., Syntrophobacteraceae 

AF002671, Desulfobacca acetoxidans, type sp., Syntrophaceae 

AJ237601, Desulfobacterium anilini, Desulfobacteraceae 

AF418174, Desulfarculus baarsii, type sp., Desulfarculaceae 

AF230531, Desulfomonile limimaris, Syntrophaceae 

AM086646, Desulfomonile tiedjei, type sp., Syntrophaceae 

Desulfobulbaceae (16) 

Y13672, Desulfocapsa sulfexigens, Desulfobulbaceae 

X95181, Desulfocapsa thiozymogenes, type sp., Desulfobulbaceae 

AM774321, Desulfopila inferna, Desulfobulbaceae 

AB110542, Desulfopila aestuarii, type sp., Desulfobulbaceae 

AF118453, Desulforhopalus singaporensis, Desulfobulbaceae 

X99707, Desulfofustis glycolicus, type sp., Desulfobulbaceae 

L42613, Desulforhopalus vacuolatus, type sp., Desulfobulbaceae 

AJ237602, Desulfobacterium catecholicum, Desulfobacteraceae 

AF099061, Desulfotalea arctica, Desulfobulbaceae 

AF099062, Desulfotalea psychrophila, type sp., Desulfobulbaceae 

X95180, Desulfobulbus elongatus, Desulfobulbaceae 

AY548789, Desulfobulbus propionicus, type sp., Desulfobulbaceae 

U12253, Desulfobulbus rhabdoformis, Desulfobulbaceae 

AB110549, Desulfobulbus japonicus, Desulfobulbaceae 

AF354663, Desulfobulbus mediterraneus, Desulfobulbaceae 

EF422413, Desulfurivibrio alkaliphilus, type sp., Desulfobulbaceae 

Bacteriovoracaceae (4) 

Desulfuromonadales (37) 

AF084859, Bacteriovorax litoralis, Bacteriovoracaceae 

AF084854, Bacteriovorax marinus, Bacteriovoracaceae 

AJ288899, Bacteriovorax stolpii, type sp., Bacteriovoracaceae 

Desulfuromonadaceae (22) 

AF084852, Peredibacter starrii, type sp., Bacteriovoracaceae 

X79412, Desulfuromusa bakii, Desulfuromonadaceae 

X79414, Desulfuromusa kysingii, type sp., Desulfuromonadaceae

X79415, Desulfuromusa succinoxidans, Desulfuromonadaceae 

AY835392, Desulfuromusa ferrireducens, Desulfuromonadaceae 

AY187303, Geopsychrobacter electrodiphilus, type sp., Geobacteraceae 

Y17712, Malonomonas rubra, type sp., Desulfuromonadaceae 

DQ991964, Pelobacter seleniigenes, Desulfuromonadaceae 

X77216, Pelobacter acidigallici, type sp., Desulfuromonadaceae 

FR749901, Pelobacter massiliensis, Desulfuromonadaceae 

AY155599, Geothermobacter ehrlichii, type sp., Geobacteraceae 

DQ309326, Geoalkalibacter ferrihydriticus, type sp., Geobacteraceae 

EU182247, Geoalkalibacter subterraneus, Geobacteraceae 

U28172, Desulfuromonas palmitatis, Desulfuromonadaceae 

U23140, Desulfuromonas acetexigens, Desulfuromonadaceae 

U49748, Desulfuromonas chloroethenica, Desulfuromonadaceae 

AF357915, Desulfuromonas michiganensis, Desulfuromonadaceae 

X70955, Pelobacter acetylenicus, Desulfuromonadaceae 

U41562, Pelobacter venetianus, Desulfuromonadaceae 

CP000142, Pelobacter carbinolicus , Desulfuromonadaceae 

AAEW02000008, Desulfuromonas acetoxidans, type sp., Desulfuromonadaceae 

AY835388, Desulfuromonas svalbardensis, Desulfuromonadaceae 

Y11560, Desulfuromonas thiophila, Desulfuromonadaceae 

Geobacteraceae (15) 

AY187307, Geobacter bemidjiensis, Geobacteraceae 

U96917, Geobacter bremensis, Geobacteraceae 

EF527427, Geobacter uraniireducens, Geobacteraceae 

EU660516, Geobacter daltonii , Geobacteraceae 

U41561, Geobacter chapellei, Geobacteraceae 

CP000482, Pelobacter propionicus , Desulfuromonadaceae 

AY653549, Geobacter psychrophilus, Geobacteraceae 

AF223382, Geobacter thiogenes, Geobacteraceae 

U96918, Geobacter pelophilus, Geobacteraceae 

DQ145534, Geobacter argillaceus, Geobacteraceae 

U28173, Geobacter hydrogenophilus, Geobacteraceae 

L07834, Geobacter metallireducens, type sp., Geobacteraceae 

AF335183, Geobacter grbiciae, Geobacteraceae 

U13928, Geobacter sulfurreducens, Geobacteraceae 

DQ145535, Geobacter pickeringii, Geobacteraceae 

Myxococcales (33) 

Cystobacteraceae and Myxococcaceae (20) 

Myxococcaceae (8) 

DQ768119, Myxococcus virescens, Myxococcaceae 

DQ768116, Myxococcus xanthus, Myxococcaceae 

AJ811623, Corallococcus macrosporus, Myxococcaceae 

DQ768117, Myxococcus fulvus, type sp., Myxococcaceae 

DQ768123, Pyxidicoccus fallax, type sp., Myxococcaceae 

AJ811588, Corallococcus coralloides, type sp., Myxococcaceae 

DQ768126, Melittangium lichenicola, Cystobacteraceae 

AJ811598, Corallococcus exiguus, Myxococcaceae 

DQ768108, Cystobacter badius, Cystobacteraceae 

DQ768109, Cystobacter fuscus, type sp., Cystobacteraceae 

DQ768115, Cystobacter velatus, Cystobacteraceae 

DQ768107, Cystobacter armeniaca, Cystobacteraceae 

DQ768111, Cystobacter miniatus, Cystobacteraceae 

DQ768106, Archangium gephyra, type sp., Cystobacteraceae 

DQ768114, Cystobacter violaceus, Cystobacteraceae 

DQ768124, Hyalangium minutum, type sp., Cystobacteraceae 

DQ768127, Stigmatella aurantiaca, type sp., Cystobacteraceae 

AJ970180, Stigmatella erecta, Cystobacteraceae 

DQ768129, Stigmatella hybrida, Cystobacteraceae 

AF382396, Anaeromyxobacter dehalogenans, type sp., Cystobacteraceae 

Nannocystaceae (4) 

AB097590, Enhygromyxa salina, type sp., Nannocystaceae 

AB083432, Plesiocystis pacifica, type sp., Nannocystaceae 

AB084253, Nannocystis exedens, type sp., Nannocystaceae 

FR749907, Nannocystis pusilla, Nannocystaceae 

Haliangiaceae (2) 

AB016470, Haliangium ochraceum, type sp., Haliangiaceae 

AB062751, Haliangium tepidum, Haliangiaceae 

AJ233944, Kofleria flava, type sp., Kofleriaceae 

AJ833647, Byssovorax cruenta, type sp., Polyangiaceae 

EU545827, Phaselicystis flava, type sp., Phaselicystidaceae 

EU240497, Sorangium cellulosum, type sp., Polyangiaceae 

AJ233942, Chondromyces robustus, Polyangiaceae 

GU207876, Jahnella thaxteri, Polyangiaceae 

HQ540311, Sandaracinus amylolyticus, type sp., Sandaracinaceae 

AB212873, Syntrophorhabdus aromaticivorans, type sp., Syntrophorhabdaceae 

Bacteroidetes (835) 

Flavobacteriaceae (391) 

EU221275, Tamlana agarivorans, Flavobacteriaceae 

AM286230, Tamlana crocina, type sp., Flavobacteriaceae 

HQ336487, Postechiella marina, type sp., Flavobacteriaceae 

DQ361033, Flaviramulus basaltis, type sp., Flavobacteriaceae 

EF217419, Hyunsoonleella jejuensis, type sp., Flavobacteriaceae 

EU443204, Jejuia pallidilutea, type sp., Flavobacteriaceae 

HM475133, Snuella lapsa, type.sp, Flavobacteriaceae 

EF108219, Gaetbulibacter marinus, Flavobacteriaceae 

AY682382, Yeosuana aromativorans, type sp., Flavobacteriaceae 

AJ628046, Mariniflexile fucanivorans, Flavobacteriaceae 

DQ312294, Mariniflexile gromovii, type sp., Flavobacteriaceae 

HQ144198, Mariniflexile aquimaris, Flavobacteriaceae 

GU552681, Gaetbulibacter aestuarii, Flavobacteriaceae 

AY883937, Gaetbulibacter saemankumensis, type sp., Flavobacteriaceae 

AM491809, Algibacter mikhailovii, Flavobacteriaceae 

HM475134, Pontirhabdus pectinivorans, type.sp, Flavobacteriaceae 

AY187689, Algibacter lectus, type sp., Flavobacteriaceae 

DQ167238, Lacinutrix algicola, Flavobacteriaceae 

DQ167239, Lacinutrix mariniflava, Flavobacteriaceae 

AY694001, Lacinutrix copepodicola, type sp., Flavobacteriaceae 

FJ886713, Olleya aquimaris, Flavobacteriaceae 

AB265181, Mesoflavibacter zeaxanthinifaciens, type sp., Flavobacteriaceae 

HM475138, Flavivirga amylovorans, Flavobacteriaceae 

HM475139, Flavivirga jejuensis, type sp., Flavobacteriaceae 

DQ001321, Psychroserpens mesophilus, Flavobacteriaceae 

U62913, Psychroserpens burtonensis, type sp., Flavobacteriaceae

EU021217, Bizionia argentinensis, Flavobacteriaceae 

AY694002, Bizionia myxarmorum, Flavobacteriaceae 

AY694003, Bizionia algoritergicola, Flavobacteriaceae 

AY693998, Subsaximicrobium saxinquilinus, Flavobacteriaceae 

AY693997, Subsaximicrobium wynnwilliamsii, type sp., Flavobacteriaceae 

FJ716799, Bizionia echini, Flavobacteriaceae 

AY694004, Bizionia gelidisalsuginis, Flavobacteriaceae 

AY694005, Bizionia saleffrena, Flavobacteriaceae 

AY651070, Bizionia paragorgiae, type sp., Flavobacteriaceae 

AY187688, Formosa agariphila, Flavobacteriaceae 

AY228461, Formosa algae, type sp., Flavobacteriaceae 

FJ348469, Formosa spongicola, Flavobacteriaceae 

HQ257254, Corallibacter vietnamensis, type sp., Flavobacteriaceae 

FJ360684, Meridianimaribacter flavus, type sp., Flavobacteriaceae 

U64013, Winogradskyella rapida, Flavobacteriaceae 

AB438962, Winogradskyella arenosi, Flavobacteriaceae 

GQ181061, Winogradskyella pacifica, Flavobacteriaceae 

AY521223, Winogradskyella thalassocola, type sp., Flavobacteriaceae 

AY521224, Winogradskyella epiphytica, Flavobacteriaceae 

AY521225, Winogradskyella eximia, Flavobacteriaceae 

FJ919968, Winogradskyella lutea, Flavobacteriaceae 

EU727254, Winogradskyella echinorum, Flavobacteriaceae 

HQ456127, Winogradskyella ulvae, Flavobacteriaceae 

AY848823, Winogradskyella poriferorum, Flavobacteriaceae 

HM368527, Winogradskyella aquimaris, Flavobacteriaceae 

FJ595484, Winogradskyella exilis, Flavobacteriaceae 

U62914, Gelidibacter algens, type sp., Flavobacteriaceae 

AF001369, Gelidibacter gilvus, Flavobacteriaceae 

AJ344133, Gelidibacter mesophilus, Flavobacteriaceae 

AY694009, Gelidibacter salicanalis, Flavobacteriaceae 

AY693999, Subsaxibacter broadyi, type sp., Flavobacteriaceae 

AB255369, Sediminibacter furfurosus, type sp., Flavobacteriaceae 

AJ278780, Leeuwenhoekiella aequorea, Flavobacteriaceae 

AF203475, Leeuwenhoekiella marinoflava, type sp., Flavobacteriaceae 

FJ405187, Leeuwenhoekiella palythoae, Flavobacteriaceae 

DQ294291, Leeuwenhoekiella blandensis, Flavobacteriaceae 

CP002046, Croceibacter atlanticus, type sp., Flavobacteriaceae 

AY445073, Muricauda flavescens, Flavobacteriaceae 

AF218782, Muricauda ruestringensis, type sp., Flavobacteriaceae 

EU156065, Muricauda lutimaris, Flavobacteriaceae 

AY445075, Muricauda aquimarina, Flavobacteriaceae 

EU888117, Muricauda olearia, Flavobacteriaceae 

EU564844, Muricauda lutaonensis, Flavobacteriaceae 

HM355805, Muricauda beolgyonensis, Flavobacteriaceae 

DQ191182, Croceitalea dokdonensis, Flavobacteriaceae 

DQ191183, Croceitalea eckloniae, type sp., Flavobacteriaceae 

FJ348473, Spongiibacterium flavum, type sp., Flavobacteriaceae 

DQ191180, Flagellimonas eckloniae, type sp., Flavobacteriaceae 

DQ167246, Costertonia aggregata, type sp., Flavobacteriaceae 

AB121974, Zobellia amurskyensis, Flavobacteriaceae 

AB121975, Zobellia laminariae, Flavobacteriaceae 

AB121976, Zobellia russellii, Flavobacteriaceae 

M62799, Zobellia uliginosa, Flavobacteriaceae 

AF208293, Zobellia galactanivorans, type sp., Flavobacteriaceae 

AB084262, Kriegella aquimaris, type sp., Flavobacteriaceae 

FN554868, Euzebyella saccharophila, type sp., Flavobacteriaceae 

AB084261, Pseudozobellia thermophila, type sp., Flavobacteriaceae 

EU443206, Muriicola jejuensis, type sp., Flavobacteriaceae 

AB264057, Zeaxanthinibacter enoshimensis, type sp., Flavobacteriaceae 

AM745437, Eudoraea adriatica, type sp., Flavobacteriaceae 

CP001712, Robiginitalea biformata, type sp., Flavobacteriaceae 

AB270585, Robiginitalea myxolifaciens, Flavobacteriaceae 

AY960749, Maribacter dokdonensis, Flavobacteriaceae 

AY271623, Maribacter sedimenticola, type sp., Flavobacteriaceae 

EU246691, Maribacter stanieri, Flavobacteriaceae 

AM712900, Maribacter forsetii, Flavobacteriaceae 

AY271626, Maribacter ulvicola, Flavobacteriaceae 

AY271624, Maribacter orientalis, Flavobacteriaceae 

AY271625, Maribacter aquivivus, Flavobacteriaceae 

AY576654, Pibocella ponti, type sp., Flavobacteriaceae 

EU512921, Maribacter antarcticus, Flavobacteriaceae 

AY771762, Maribacter arcticus, Flavobacteriaceae 

AM497875, Maribacter polysiphoniae, Flavobacteriaceae 

AJ575643, Arenibacter palladensis, Flavobacteriaceae 

AB080771, Arenibacter troitsensis, Flavobacteriaceae 

EF536748, Arenibacter echinorum, Flavobacteriaceae 

AY271622, Arenibacter certesii, Flavobacteriaceae 

AF052742, Arenibacter latericius, type sp., Flavobacteriaceae 

EU999955, Arenibacter nanhaiticus, Flavobacteriaceae 

AF001366, Cellulophaga algicola, Flavobacteriaceae 

AJ005972, Cellulophaga baltica, Flavobacteriaceae 

AB100840, Cellulophaga pacifica, Flavobacteriaceae 

EU443205, Cellulophaga tyrosinoxydans, Flavobacteriaceae 

AB206957, Sediminicola luteus, type sp., Flavobacteriaceae 

CP002534, Cellulophaga lytica, type sp., Flavobacteriaceae 

HQ596527, Cellulophaga geojensis, Flavobacteriaceae 

AJ005973, Cellulophaga fucicola, Flavobacteriaceae 

AY027806, Aequorivita crocea, Flavobacteriaceae 

AY027805, Aequorivita lipolytica, Flavobacteriaceae 

AY027802, Aequorivita antarctica, type sp., Flavobacteriaceae 

EU290153, Aequorivita capsosiphonis, Flavobacteriaceae 

AF170749, Aequorivita sublithincola, Flavobacteriaceae 

EU642844, Vitellibacter aestuarii, Flavobacteriaceae 

AB071382, Vitellibacter vladivostokensis, type sp., Flavobacteriaceae 

AB261012, Marixanthomonas ophiurae, type sp., Flavobacteriaceae 

EF554364, Ulvibacter antarcticus, Flavobacteriaceae 

AY243096, Ulvibacter litoralis, type sp., Flavobacteriaceae 

AB602429, Aureitalea marina, type sp., Flavobacteriaceae 

AY608409, Gramella echinicola, type sp., Flavobacteriaceae 

GQ857650, Gramella gaetbulicola, Flavobacteriaceae 

DQ002871, Gramella portivictoriae, Flavobacteriaceae 

AY753911, Gramella marina, Flavobacteriaceae 

AF536383, Mesonia algae, type sp., Flavobacteriaceae 

HM234095, Mesonia ostreae, Flavobacteriaceae 

DQ367409, Mesonia mobilis, Flavobacteriaceae 

FM882228, Mesonia phycicola , Flavobacteriaceae 

DQ191176, Salegentibacter agarivorans, Flavobacteriaceae 

AB116148, Salegentibacter holothuriorum, Flavobacteriaceae 

M92279, Salegentibacter salegens, type sp., Flavobacteriaceae 

EF486353, Salegentibacter salarius, Flavobacteriaceae 

AY576653, Salegentibacter mishustinae, Flavobacteriaceae 

EF612764, Salegentibacter salinarum, Flavobacteriaceae 

AY682200, Salegentibacter flavus, Flavobacteriaceae 

FR849911, Psychroflexus gondwanensis, Flavobacteriaceae

U85881, Psychroflexus torquis, type sp., Flavobacteriaceae 

EU135715, Psychroflexus sediminis, Flavobacteriaceae 

AF513434, Psychroflexus tropicus, Flavobacteriaceae 

EU874390, Psychroflexus salinarum, Flavobacteriaceae 

FR714910, Psychroflexus halocasei, Flavobacteriaceae 

DQ855467, Zunongwangia profunda, type sp., Flavobacteriaceae 

EU135614, Salinimicrobium terrae, Flavobacteriaceae 

EF520007, Salinimicrobium xinjiangense, Flavobacteriaceae 

GQ866112, Salinimicrobium marinum, Flavobacteriaceae 

JF340052, Salinimicrobium gaetbulicola, Flavobacteriaceae 

DQ640642, Salinimicrobium catena, type sp., Flavobacteriaceae 

AY694008, Gillisia illustrilutea, Flavobacteriaceae 

AY694007, Gillisia sandarakina, Flavobacteriaceae 

AJ440991, Gillisia limnaea, type sp., Flavobacteriaceae 

DQ202393, Gillisia myxillae, Flavobacteriaceae 

AY694006, Gillisia hiemivivida, Flavobacteriaceae 

AY576655, Gillisia mitskevichiae, Flavobacteriaceae 

FJ750453, Aquimarina agarilytica, Flavobacteriaceae 

HM475137, Aquimarina addita, Flavobacteriaceae 

AB517144, Aquimarina macrocephali, Flavobacteriaceae 

AY608406, Aquimarina muelleri, type sp., Flavobacteriaceae 

M58769, Aquimarina latercula, Flavobacteriaceae 

AM113977, Aquimarina intermedia, Flavobacteriaceae 

FJ882164, Aquimarina salinaria, Flavobacteriaceae 

FJ348470, Aquimarina spongiae, Flavobacteriaceae 

HM998910, Aquimarina mytili, Flavobacteriaceae 

AY987367, Aquimarina brevivitae, Flavobacteriaceae 

DQ003276, Dokdonia donghaensis, type sp., Flavobacteriaceae 

AB198086, Dokdonia genika, type sp., Flavobacteriaceae 

AB198089, Dokdonia diaphoros, Flavobacteriaceae 

AB198088, Dokdonia eikasta, Flavobacteriaceae 

AY581113, Flavobacterium antarcticum, Flavobacteriaceae 

U85887, Flavobacterium tegetincola, Flavobacteriaceae 

AJ440996, Flavobacterium gelidilacus, Flavobacteriaceae 

GQ370387, Flavobacterium ponti, Flavobacteriaceae 

AJ557887, Flavobacterium frigoris, Flavobacteriaceae 

U85889, Flavobacterium gillisiae, Flavobacteriaceae 

AJ557886, Flavobacterium degerlachei, Flavobacteriaceae 

HQ436467, Flavobacterium urumqiense, Flavobacteriaceae 

AF433173, Flavobacterium xinjiangense, Flavobacteriaceae 

FJ654474, Flavobacterium sinopsychrotolerans, Flavobacteriaceae 

AF030380, Flavobacterium xanthum, Flavobacteriaceae 

AB075230, Flavobacterium limicola, Flavobacteriaceae 

AB078060, Flavobacterium psychrophilum, Flavobacteriaceae 

AM934651, Flavobacterium swingsii, Flavobacteriaceae 

EU036219, Flavobacterium tiangeerense, Flavobacteriaceae 

AF162266, Flavobacterium frigidarium, Flavobacteriaceae 

AB455265, Flavobacterium algicola, Flavobacteriaceae 

AJ811961, Flavobacterium fryxellicola, Flavobacteriaceae 

AF433174, Flavobacterium omnivorum, Flavobacteriaceae 

AJ585428, Flavobacterium psychrolimnae, Flavobacteriaceae 

HQ436466, Flavobacterium xueshanense, Flavobacteriaceae 

AJ557888, Flavobacterium micromati, Flavobacteriaceae 

AM230490, Flavobacterium pectinovorum, Flavobacteriaceae 

AB183888, Flavobacterium frigidimaris, Flavobacteriaceae 

AM177392, Flavobacterium aquidurense, Flavobacteriaceae 

FR774916, Flavobacterium araucananum, Flavobacteriaceae 

AM230486, Flavobacterium flevense, Flavobacteriaceae 

GQ148878, Flavobacterium myungsuense, Flavobacteriaceae 

GQ144413, Flavobacterium yonginense, Flavobacteriaceae 

AY581115, Flavobacterium segetis, Flavobacteriaceae 

AY581114, Flavobacterium weaverense, Flavobacteriaceae 

EU046269, Flavobacterium anhuiense, Flavobacteriaceae 

GU564236, Flavobacterium phragmitis, Flavobacteriaceae 

AJ318907, Flavobacterium denitrificans, Flavobacteriaceae 

DQ372986, Flavobacterium defluvii, Flavobacteriaceae 

AM230489, Flavobacterium johnsoniae, Flavobacteriaceae 

M62792, Flexibacter aurantiacus, Cytophagaceae 

GQ281770, Flavobacterium banpakuense, Flavobacteriaceae 

GU138377, Flavobacterium ginsenosidimutans, Flavobacteriaceae 

HM627539, Flavobacterium chungbukense, Flavobacteriaceae 

GQ281769, Flavobacterium compostarboris, Flavobacteriaceae 

DQ222427, Flavobacterium daejeonense, Flavobacteriaceae 

EU672803, Flavobacterium glycines, Flavobacteriaceae 

DQ178976, Flavobacterium soli, Flavobacteriaceae 

EF575563, Flavobacterium resistens, Flavobacteriaceae 

EU924275, Flavobacterium chungangense, Flavobacteriaceae 

FR774915, Flavobacterium chilense, Flavobacteriaceae 

FN669776, Flavobacterium oncorhynchi, Flavobacteriaceae 

AM265623, Flavobacterium hercynium, Flavobacteriaceae 

AM230491, Flavobacterium saccharophilum, Flavobacteriaceae 

M58764, Flavobacterium hydatis, Flavobacteriaceae 

L39067, Flavobacterium hibernum, Flavobacteriaceae 

AM177616, Flavobacterium reichenbachii, Flavobacteriaceae 

DQ515962, Flavobacterium glaciei, Flavobacteriaceae 

EU109724, Flavobacterium fluvii, Flavobacteriaceae 

AM230492, Flavobacterium succinicans, Flavobacteriaceae 

AB180738, Flavobacterium granuli, Flavobacteriaceae 

GU295968, Flavobacterium cheonanense, Flavobacteriaceae 

GU295967, Flavobacterium koreense, Flavobacteriaceae 

GU295971, Flavobacterium chungnamense, Flavobacteriaceae 

FJ593904, Flavobacterium macrobrachii, Flavobacteriaceae 

DQ889724, Flavobacterium terrigena, Flavobacteriaceae 

AM230485, Flavobacterium aquatile, type sp., Flavobacteriaceae 

EF407880, Flavobacterium cheniae, Flavobacteriaceae 

EU423319, Flavobacterium sasangense, Flavobacteriaceae 

EF126993, Flavobacterium cucumis, Flavobacteriaceae 

DQ372982, Flavobacterium croceum, Flavobacteriaceae 

DQ021903, Flavobacterium saliperosum, Flavobacteriaceae 

EU521691, Flavobacterium cauense, Flavobacteriaceae 

DQ222428, Flavobacterium suncheonense, Flavobacteriaceae 

AB078047, Flavobacterium columnare, Flavobacteriaceae 

EF117329, Flavobacterium terrae, Flavobacteriaceae 

EU313814, Flavobacterium caeni, Flavobacteriaceae 

EF424395, Flavobacterium lindanitolerans, Flavobacteriaceae 

M58777, Myroides odoratus, type sp., Flavobacteriaceae 

AB176662, Myroides pelagicus, Flavobacteriaceae 

GU253339, Myroides phaeus, Flavobacteriaceae 

AJ854059, Myroides odoratimimus, Flavobacteriaceae 

EU204978, Myroides profundi, Flavobacteriaceae 

GQ857652, Myroides marinus, Flavobacteriaceae 

AM292800, Flavobacterium ceti, Flavobacteriaceae 

AY904351, Flavobacterium indicum, Flavobacteriaceae

GQ988780, Flavobacterium haoranii, Flavobacteriaceae 

GU073293, Flavobacterium dongtanense, Flavobacteriaceae 

AM934661, Flavobacterium rivuli, Flavobacteriaceae 

AM934666, Flavobacterium subsaxonicum, Flavobacteriaceae 

GQ245972, Flavobacterium beibuense, Flavobacteriaceae 

DQ372981, Flavobacterium filum, Flavobacteriaceae 

DQ009623, Capnocytophaga leadbetteri, Flavobacteriaceae 

X67609, Capnocytophaga sputigena, Flavobacteriaceae 

U41350, Capnocytophaga ochracea, type sp., Flavobacteriaceae 

X97247, Capnocytophaga haemolytica, Flavobacteriaceae 

AY643075, Capnocytophaga canimorsus, Flavobacteriaceae 

AY643076, Capnocytophaga cynodegmi, Flavobacteriaceae 

X67608, Capnocytophaga gingivalis, Flavobacteriaceae 

U41347, Capnocytophaga granulosa, Flavobacteriaceae 

Y17612, Coenonia anatina, type sp., Flavobacteriaceae 

AB255367, Galbibacter mesophilus, type sp., Flavobacteriaceae 

EF660761, Joostella marina, type sp., Flavobacteriaceae 

DQ423479, Zhouia amylolytica, type sp., Flavobacteriaceae 

FJ463655, Gangjinia marincola, type sp., Flavobacteriaceae 

AB362212, Leptobacterium flavescens, type sp., Flavobacteriaceae 

EU287913, Lutaonella thermophila, type sp., Flavobacteriaceae 

AB255368, Gilvibacter sediminis, type sp., Flavobacteriaceae 

HM475136, Nonlabens agnitus, Flavobacteriaceae 

GU902979, Nonlabens ulvanivorans, Flavobacteriaceae 

DQ017065, Nonlabens dokdonensis, Flavobacteriaceae 

FR733714, Nonlabens xylanidelens, type sp., Flavobacteriaceae 

DQ064789, Nonlabens spongiae, type sp., Flavobacteriaceae 

AY987349, Nonlabens tegetincola, type sp., Flavobacteriaceae 

AB206954, Nonlabens sediminis, type sp., Flavobacteriaceae 

AY195836, Kordia algicida, type sp., Flavobacteriaceae 

GU233518, Kordia periserrulae, Flavobacteriaceae 

AB294107, Fulvibacter tottoriensis, type sp., Flavobacteriaceae 

EU239499, Aestuariicola saemankumensis, type sp., Flavobacteriaceae 

EF108218, Lutimonas vermicola, type sp., Flavobacteriaceae 

EF670651, Actibacter sediminis, type sp., Flavobacteriaceae 

AM411030, Tenacibaculum discolor, Flavobacteriaceae 

AY962294, Tenacibaculum litoreum, Flavobacteriaceae 

AM746477, Tenacibaculum gallaicum, Flavobacteriaceae 

AM412314, Tenacibaculum adriaticum, Flavobacteriaceae 

EU428783, Tenacibaculum crassostreae, Flavobacteriaceae 

AY661691, Tenacibaculum lutimaris, Flavobacteriaceae 

AB032505, Tenacibaculum amylolyticum, Flavobacteriaceae 

AF469612, Tenacibaculum skagerrakense, Flavobacteriaceae 

AB032501, Tenacibaculum mesophilum, Flavobacteriaceae 

AB078058, Tenacibaculum ovolyticum, Flavobacteriaceae 

FN545354, Tenacibaculum dicentrarchi, Flavobacteriaceae 

AM746476, Tenacibaculum soleae, Flavobacteriaceae 

EF416572, Tenacibaculum aiptasiae, Flavobacteriaceae 

DQ314760, Tenacibaculum aestuarii, Flavobacteriaceae 

HQ401023, Tenacibaculum geojense, Flavobacteriaceae 

FJ490366, Tenacibaculum jejuense, Flavobacteriaceae 

DQ822567, Tenacibaculum litopenaei, Flavobacteriaceae 

AY189722, Polaribacter butkevichii, Flavobacteriaceae 

M61002, Polaribacter irgensii, Flavobacteriaceae 

U73726, Polaribacter filamentus, type sp., Flavobacteriaceae 

U14586, Polaribacter franzmannii, Flavobacteriaceae 

DQ004686, Polaribacter dokdonensis, Flavobacteriaceae 

AB078057, Tenacibaculum maritimum, type sp., Flavobacteriaceae 

FJ425213, Polaribacter gangjinensis, Flavobacteriaceae 

AY962293, Lutibacter litoralis, type sp., Flavobacteriaceae 

FJ598048, Lutibacter maritimus , Flavobacteriaceae 

HM234096, Lutibacter aestuarii, Flavobacteriaceae 

EU290161, Maritimimonas rapanae, type sp., Flavobacteriaceae 

EF204460, Epilithonimonas lactis , Flavobacteriaceae 

AF493696, Epilithonimonas tenax, type sp., Flavobacteriaceae 

DQ166169, Chryseobacterium xinjiangense, Flavobacteriaceae 

EU869190, Chryseobacterium piscicola, Flavobacteriaceae 

AM748690, Chryseobacterium aquaticum, Flavobacteriaceae 

FJ932652, Chryseobacterium greenlandense, Flavobacteriaceae 

EU999735, Chryseobacterium piperi, Flavobacteriaceae 

EF591302, Chryseobacterium soli, Flavobacteriaceae 

GU138380, Chryseobacterium ginsenosidimutans, Flavobacteriaceae 

AY883415, Chryseobacterium soldanellicola, Flavobacteriaceae 

AY468447, Chryseobacterium balustinum, Flavobacteriaceae 

AM040439, Chryseobacterium piscium, Flavobacteriaceae 

AJ271009, Chryseobacterium scophthalmum, Flavobacteriaceae 

AY468448, Chryseobacterium indoltheticum, Flavobacteriaceae 

EF076759, Chryseobacterium daeguense, Flavobacteriaceae 

AM773820, Chryseobacterium gregarium, Flavobacteriaceae 

DQ673672, Chryseobacterium hagamense, Flavobacteriaceae 

AY883416, Chryseobacterium taeanense, Flavobacteriaceae 

AJ843132, Chryseobacterium taichungense, Flavobacteriaceae 

DQ318789, Chryseobacterium taiwanense, Flavobacteriaceae 

DQ256729, Chryseobacterium wanjuense, Flavobacteriaceae 

AJ457206, Chryseobacterium daecheongense, Flavobacteriaceae 

AJ309324, Chryseobacterium defluvii, Flavobacteriaceae 

AM232810, Chryseobacterium gambrini, Flavobacteriaceae 

AY315443, Chryseobacterium formosense, Flavobacteriaceae 

AM489609, Chryseobacterium luteum, Flavobacteriaceae 

AB193101, Chryseobacterium shigense, Flavobacteriaceae 

AJ871397, Chryseobacterium vrystaatense, Flavobacteriaceae 

DQ673671, Chryseobacterium elymi, Flavobacteriaceae 

DQ673674, Chryseobacterium lathyri, Flavobacteriaceae 

EF204451, Chryseobacterium oranimense, Flavobacteriaceae 

DQ673670, Chryseobacterium rhizosphaerae, Flavobacteriaceae 

FN674441, Chryseobacterium oncorhynchi, Flavobacteriaceae 

AM232806, Chryseobacterium ureilyticum, Flavobacteriaceae 

AJ271010, Chryseobacterium joostei, Flavobacteriaceae 

EF591303, Chryseobacterium jejuense, Flavobacteriaceae 

HM212415, Chryseobacterium vietnamense, Flavobacteriaceae 

EF644913, Chryseobacterium aquifrigidense, Flavobacteriaceae 

EF154516, Chryseobacterium flavum, Flavobacteriaceae 

AM232812, Chryseobacterium gleum, type sp., Flavobacteriaceae 

FN398101, Chryseobacterium arthrosphaerae, Flavobacteriaceae 

AM232813, Chryseobacterium indologenes, Flavobacteriaceae 

FN554975, Chryseobacterium culicis, Flavobacteriaceae 

DQ336714, Chryseobacterium caeni, Flavobacteriaceae 

EF685359, Chryseobacterium hungaricum, Flavobacteriaceae 

AM159183, Chryseobacterium hispanicum, Flavobacteriaceae 

EF204446, Chryseobacterium bovis, Flavobacteriaceae 

AM261868, Chryseobacterium hominis, Flavobacteriaceae 

GQ259742, Chryseobacterium yonginense, Flavobacteriaceae 

GU345045, Chryseobacterium chaponense, Flavobacteriaceae 

EU360967, Chryseobacterium palustre, Flavobacteriaceae

AY553293, Chryseobacterium antarcticum, Flavobacteriaceae 

AY553294, Chryseobacterium jeonii, Flavobacteriaceae 

FN297836, Chryseobacterium treverense, Flavobacteriaceae 

EU516352, Chryseobacterium solincola, Flavobacteriaceae 

AM982786, Chryseobacterium anthropi, Flavobacteriaceae 

AF344179, Chryseobacterium koreense, Flavobacteriaceae 

EF204450, Chryseobacterium haifense, Flavobacteriaceae 

EU360966, Chryseobacterium humi, Flavobacteriaceae 

EF554366, Chryseobacterium marinum, Flavobacteriaceae 

AM232809, Chryseobacterium pallidum, Flavobacteriaceae 

AJ534853, Chryseobacterium molle, Flavobacteriaceae 

AJ575430, Cloacibacterium normanense, type sp., Flavobacteriaceae 

EU581834, Cloacibacterium rupense, Flavobacteriaceae 

U60101, Riemerella anatipestifer, type sp., Flavobacteriaceae 

AF181448, Riemerella columbina, Flavobacteriaceae 

EU718058, Planobacterium taklimakanense, type sp., Flavobacteriaceae 

FJ713810, Soonwooa buanensis, type sp., Flavobacteriaceae 

EF426425, Elizabethkingia anophelis, type sp., Flavobacteriaceae 

AB071953, Elizabethkingia miricola, Flavobacteriaceae 

AJ704540, Elizabethkingia meningoseptica, type sp., Flavobacteriaceae 

AM177497, Empedobacter brevis, type sp., Flavobacteriaceae 

AM084341, Wautersiella falsenii, type sp., Flavobacteriaceae 

CP002455, Weeksella virosa, type sp., Flavobacteriaceae 

U87101, Ornithobacterium rhinotracheale, type sp., Flavobacteriaceae 

FJ424814, Wandonia haliotis , Cryomorphaceae 

AF493694, Fluviicola taffensis, type sp., Cryomorphaceae 

AF521195, Brumimicrobium glaciale, type sp., Cryomorphaceae 

AB176674, Lishizhenia caseinilytica, type sp., Cryomorphaceae 

EU183317, Lishizhenia tianjinensis, Cryomorphaceae 

AB078042, Crocinitomix catalasitica, type sp., Cryomorphaceae 

Bacteroidales (143) 

Bacteroidaceae and Prevotellaceae (89) 

Prevotellaceae (50) 

X81877, Hallella seregens, type sp., Prevotellaceae 

X81876, Prevotella dentalis, Prevotellaceae 

AY350613, Prevotella bergensis, Prevotellaceae 

AY840553, Prevotella baroniae, Prevotellaceae 

L16477, Prevotella buccae, Prevotellaceae 

AB477014, Prevotella dentasini, Prevotellaceae 

AY323524, Prevotella denticola, Prevotellaceae 

AB182483, Prevotella multiformis, Prevotellaceae 

FJ545433, Prevotella fusca, Prevotellaceae 

FJ545434, Prevotella scopos, Prevotellaceae 

CP002122, Prevotella melaninogenica, type sp., Prevotellaceae 

L16473, Prevotella veroralis, Prevotellaceae 

EU126661, Prevotella histicola, Prevotellaceae 

EF534314, Prevotella maculosa, Prevotellaceae 

L16474, Prevotella oris, Prevotellaceae 

AB108826, Prevotella salivae, Prevotellaceae 

AJ011683, Prevotella albensis, Prevotellaceae 

L16472, Prevotella oulorum, Prevotellaceae 

AB064923, Prevotella copri, Prevotellaceae 

AB429504, Prevotella falsenii, Prevotellaceae 

X73963, Prevotella nigrescens, Prevotellaceae 

X73965, Prevotella intermedia, Prevotellaceae 

AB480534, Prevotella aurantiaca , Prevotellaceae 

Y13105, Prevotella pallens, Prevotellaceae 

L16483, Prevotella disiens, Prevotellaceae 

L16465, Prevotella corporis, Prevotellaceae 

AM422125, Prevotella amnii, Prevotellaceae 

L16475, Prevotella bivia, Prevotellaceae 

AB078827, Prevotella paludivivens, Prevotellaceae 

AY836508, Prevotella loescheii, Prevotellaceae 

AB108825, Prevotella shahii, Prevotellaceae 

AF481227, Prevotella marshii, Prevotellaceae 

FJ825149, Prevotella saccharolytica, Prevotellaceae 

AY323522, Prevotella oralis, Prevotellaceae 

AJ005635, Prevotella enoeca, Prevotellaceae 

AB278593, Prevotella pleuritidis, Prevotellaceae 

AB244774, Prevotella stercorea, Prevotellaceae 

L16476, Prevotella buccalis, Prevotellaceae 

DQ518919, Prevotella timonensis, Prevotellaceae 

AF481228, Prevotella micans, Prevotellaceae 

AY957555, Prevotella nanceiensis, Prevotellaceae 

AJ011682, Prevotella brevis, Prevotellaceae 

L16482, Prevotella ruminicola, Prevotellaceae 

AB200414, Prevotella multisaccharivorax, Prevotellaceae 

AJ006457, Prevotella bryantii, Prevotellaceae 

AB078826, Xylanibacter oryzae, type sp., Prevotellaceae 

AJ005634, Prevotella tannerae, Prevotellaceae 

AB331896, Paraprevotella clara, type sp., Prevotellaceae 

AB331897, Paraprevotella xylaniphila, Prevotellaceae 

EU694176, Phocaeicola abscessus, type sp., Unclassified Bacteroidales 

AB253731, Bacteroides salanitronis, Bacteroidaceae 

AB253726, Bacteroides barnesiae, Bacteroidaceae 

AB260026, Bacteroides coprophilus, Bacteroidaceae 

AB200224, Bacteroides coprocola, Bacteroidaceae 

AB200217, Bacteroides plebeius, Bacteroidaceae 

AB242142, Bacteroides dorei, Bacteroidaceae 

AJ867050, Bacteroides vulgatus, Bacteroidaceae 

AY126616, Bacteroides massiliensis, Bacteroidaceae 

GQ456204, Bacteroides sartorii, Bacteroidaceae 

AB298727, Bacteroides paurosaccharolyticus, Bacteroidaceae 

AB200227, Bacteroides helcogenes, Bacteroidaceae 

L16487, Prevotella heparinolytica, Prevotellaceae 

L16488, Prevotella zoogleoformans, Prevotellaceae 

AB490802, Bacteroides fluxus, Bacteroidaceae 

AB531489, Bacteroides rodentium, Bacteroidaceae 

AB050110, Bacteroides uniformis, Bacteroidaceae 

AB363973, Bacteroides graminisolvens, Bacteroidaceae 

AY608696, Bacteroides salyersiae, Bacteroidaceae 

AY608697, Bacteroides nordii, Bacteroidaceae 

AE015928, Bacteroides thetaiotaomicron , Bacteroidaceae 

GQ496624, Bacteroides faecis, Bacteroidaceae 

AB200229, Bacteroides pyogenes, Bacteroidaceae 

AB222699, Bacteroides finegoldii, Bacteroidaceae 

AB021164, Bacteroides acidifaciens, Bacteroidaceae 

AB574480, Bacteroides faecichinchillae, Bacteroidaceae 

X83951, Bacteroides caccae, Bacteroidaceae 

AB050108, Bacteroides ovatus, Bacteroidaceae

AM230650, Bacteroides xylanisolvens, Bacteroidaceae 

CR626927, Bacteroides fragilis , type sp., Bacteroidaceae 

AB490803, Bacteroides oleiciplenus, Bacteroidaceae 

AB574481, Bacteroides stercorirosoris, Bacteroidaceae 

AJ583243, Bacteroides cellulosilyticus, Bacteroidaceae 

AB214328, Bacteroides intestinalis, Bacteroidaceae 

AB490801, Bacteroides clarus, Bacteroidaceae 

AB253732, Bacteroides gallinarum, Bacteroidaceae 

X83953, Bacteroides stercoris, Bacteroidaceae 

AB050107, Bacteroides eggerthii, Bacteroidaceae 

AF319778, Bacteroides coprosuis, Bacteroidaceae 

AB264625, Bacteroides propionicifaciens, Bacteroidaceae 

Porphyromonadaceae (31) 

L26102, Porphyromonas circumdentaria, Porphyromonadaceae 

GU233445, Porphyromonas gingivicanis, Porphyromonadaceae 

AY253728, Porphyromonas endodontalis, Porphyromonadaceae 

L16490, Porphyromonas asaccharolytica, type sp., Porphyromonadaceae 

AY570514, Porphyromonas uenonis, Porphyromonadaceae 

L16494, Porphyromonas macacae, Porphyromonadaceae 

L16493, Porphyromonas levii, Porphyromonadaceae 

AY968205, Porphyromonas somerae, Porphyromonadaceae 

EU414673, Porphyromonas bennonis, Porphyromonadaceae 

X76259, Porphyromonas cangingivalis, Porphyromonadaceae 

AB525416, Porphyromonas canoris, Porphyromonadaceae 

X76260, Porphyromonas cansulci, Porphyromonadaceae 

GU233446, Porphyromonas crevioricanis, Porphyromonadaceae 

AB035459, Porphyromonas gingivalis, Porphyromonadaceae 

AF208290, Porphyromonas gulae, Porphyromonadaceae 

X82823, Porphyromonas catoniae, Porphyromonadaceae 

AB035460, Tannerella forsythia, type sp., Porphyromonadaceae 

AB261128, Parabacteroides johnsonii, Porphyromonadaceae 

AB238928, Parabacteroides merdae, Porphyromonadaceae 

AB238922, Parabacteroides distasonis, type sp., Porphyromonadaceae 

AY974070, Parabacteroides goldsteinii, Porphyromonadaceae 

AB470343, Parabacteroides gordonii, Porphyromonadaceae 

Y18530, Dysgonomonas gadei, type sp., Porphyromonadaceae 

FN356023, Dysgonomonas hofstadii, Porphyromonadaceae 

AJ319867, Dysgonomonas mossii, Porphyromonadaceae 

AY570690, Petrimonas sulfuriphila, type sp., Porphyromonadaceae 

AY742226, Proteiniphilum acetatigenes, type sp., Porphyromonadaceae 

U41355, Dysgonomonas capnocytophagoides, Porphyromonadaceae 

AB078842, Paludibacter propionicigenes, type sp., Porphyromonadaceae 

AB370251, Barnesiella intestinihominis, Porphyromonadaceae 

AB267809, Barnesiella viscericola, type sp., Porphyromonadaceae 

AB443948, Butyricimonas synergistica, type sp., Porphyromonadaceae 

AB443949, Butyricimonas virosa, Porphyromonadaceae 

AY560020, Odoribacter denticanis, Porphyromonadaceae 

AB490805, Odoribacter laneus, Porphyromonadaceae 

L16496, Odoribacter splanchnicus, type sp., Porphyromonadaceae 

HQ697914, Mangroviflexus xiamenensis, type sp., Marinilabiliaceae 

AB362265, Geofilum rubicundum, type sp., Marinilabiliaceae 

GQ922844, Natronoflexus pectinivorans, type sp., Marinilabiliaceae 

FR733683, Cytophaga xylanolytica, Cytophagaceae 

AJ418048, Anaerophaga thermohalophila, type sp., Marinilabiliaceae 

AB517713, Marinilabilia salmonicolor, type sp., Marinilabiliaceae 

AJ784993, Alkaliflexus imshenetskii, type sp., Marinilabiliaceae 

GU269545, Meniscus glaucopis, type sp., Cytophagaceae 

AY918928, Prolixibacter bellariivorans, type sp., Unclassified Bacteroidetes 

GQ200190, Sunxiuqinia elliptica, type sp., Unclassified Bacteroidales 

FJ394546, Marinifilum fragile, type sp., Unclassified Bacteroidetes 

M58766, Cytophaga fermentans, Cytophagaceae 

Rikenellaceae (6) 

Cryomorphaceae (3) 

AY643083, Alistipes finegoldii, Rikenellaceae 

AY974072, Alistipes shahii, Rikenellaceae 

L16497, Alistipes putredinis, type sp., Rikenellaceae 

AY974071, Alistipes onderdonkii, Rikenellaceae 

AB490804, Alistipes indistinctus, Rikenellaceae 

L16498, Rikenella microfusus, type sp., Rikenellaceae 

AB125062, Owenweeksia hongkongensis, type sp., Cryomorphaceae 

HQ172900, Schleiferia thermophila, Schleiferiaceae 

AF170738, Cryomorpha ignava, type sp., Cryomorphaceae 

Chitinophagaceae (37) 

FJ177532, Ferruginibacter lapsinanis, Chitinophagaceae 

FJ177530, Ferruginibacter alkalilentus, type sp., Chitinophagaceae 

EU521690, Lacibacter cauensis, type sp., Chitinophagaceae 

HM130561, Flavitalea populi, type sp., Chitinophagaceae 

AB267476, Flavisolibacter ginsengiterrae, type sp., Chitinophagaceae 

AB267477, Flavisolibacter ginsengisoli, Chitinophagaceae 

DQ244077, Niastella koreensis, type sp., Chitinophagaceae 

DQ244076, Niastella yeongjuensis, Chitinophagaceae 

EU877262, Niastella populi , Chitinophagaceae 

DQ457019, Niabella aurantiaca, type sp., Chitinophagaceae 

GU291295, Niabella tibetensis, Chitinophagaceae 

EF592608, Niabella soli, Chitinophagaceae 

EU616816, Niabella ginsengisoli, Chitinophagaceae 

FJ457040, Niabella yanshanensis, Chitinophagaceae 

AM230484, Terrimonas ferruginea, type sp., Chitinophagaceae 

FJ347757, Terrimonas aquatica, Chitinophagaceae 

AB192292, Terrimonas lutea, Chitinophagaceae 

AB267478, Segetibacter koreensis, type sp., Chitinophagaceae 

GQ421847, Segetibacter aerophilus, Chitinophagaceae 

FN665659, Hydrotalea flava, type sp., Chitinophagaceae 

EF407879, Sediminibacterium salmoneum, type sp., Chitinophagaceae 

AB362776, Filimonas lacunae, type sp., Chitinophagaceae 

EU877263, Parasegetibacter luojiensis, type sp., Chitinophagaceae 

EU854577, Flavihumibacter petaseus, type sp., Chitinophagaceae 

AM237311, Chitinophaga arvensicola, Chitinophagaceae 

AB264798, Chitinophaga ginsengisegetis, Chitinophagaceae 

EU714260, Chitinophaga niastensis, Chitinophagaceae 

FJ750951, Chitinophaga eiseniae, Chitinophagaceae 

AB278570, Chitinophaga terrae, Chitinophagaceae 

AB078055, Chitinophaga japonensis, Chitinophagaceae 

FM865977, Chitinophaga rupis, Chitinophagaceae 

AB078049, Chitinophaga filiformis, Chitinophagaceae 

AB245374, Chitinophaga ginsengisoli, Chitinophagaceae 

AF078775, Chitinophaga pinensis, type sp., Chitinophagaceae 

DQ062743, Chitinophaga skermanii, Chitinophagaceae

Saprospiraceae (10) 

AB078066, Chitinophaga sancti, Chitinophagaceae 

EU714259, Chitinophaga niabensis, Chitinophagaceae 

EF554367, Lewinella antarctica, Saprospiraceae 

AB301494, Lewinella lutea, Saprospiraceae 

AM286229, Lewinella agarilytica, Saprospiraceae 

AB301495, Lewinella marina, Saprospiraceae 

AF039295, Lewinella persica, Saprospiraceae 

AF039292, Lewinella cohaerens, type sp., Saprospiraceae 

AF039294, Lewinella nigricans, Saprospiraceae 

AJ784892, Haliscomenobacter hydrossis, type sp., Saprospiraceae 

AB245933, Aureispira marina, type sp., Saprospiraceae 

AB278130, Aureispira maritima, Saprospiraceae 

Sphingobacteriaceae (86) 

AM491371, Pedobacter hartonius, Sphingobacteriaceae 

AM491369, Pedobacter westerhofensis, Sphingobacteriaceae 

AJ438174, Pedobacter piscium, Sphingobacteriaceae 

HM448033, Sphingobacterium antarcticum, Sphingobacteriaceae 

AJ438170, Pedobacter cryoconitis, Sphingobacteriaceae 

AJ583425, Pedobacter himalayensis, Sphingobacteriaceae 

EF100697, Pedobacter insulae, Sphingobacteriaceae 

DQ092871, Pedobacter koreensis, Sphingobacteriaceae 

HM640986, Pedobacter boryungensis, Sphingobacteriaceae 

AB245371, Pedobacter ginsengisoli, Sphingobacteriaceae 

AJ786798, Pedobacter caeni, Sphingobacteriaceae 

AM491372, Pedobacter steynii, Sphingobacteriaceae 

AM491368, Pedobacter duraquae, Sphingobacteriaceae 

AM491370, Pedobacter metabolipauper, Sphingobacteriaceae 

AJ438171, Pedobacter africanus, Sphingobacteriaceae 

AJ438172, Pedobacter heparinus, type sp., Sphingobacteriaceae 

AB245368, Pedobacter panaciterrae, Sphingobacteriaceae 

EU030686, Pedobacter nyackensis, Sphingobacteriaceae 

AM114396, Pedobacter aquatilis, Sphingobacteriaceae 

EU030688, Pedobacter alluvionis, Sphingobacteriaceae 

DQ112353, Pedobacter roseus, Sphingobacteriaceae 

DQ235228, Pedobacter sandarakinus, Sphingobacteriaceae 

EF660751, Pedobacter agri, Sphingobacteriaceae 

AM279215, Pedobacter soli, Sphingobacteriaceae 

EU030687, Pedobacter borealis, Sphingobacteriaceae 

DQ097274, Pedobacter suwonensis, Sphingobacteriaceae 

DQ889723, Pedobacter terrae, Sphingobacteriaceae 

AM279214, Pedobacter rhizosphaerae, Sphingobacteriaceae 

AB264126, Nubsella zeaxanthinifaciens, type sp., Sphingobacteriaceae 

AB267722, Pedobacter daechungensis, Sphingobacteriaceae 

EF446146, Pedobacter lentus, Sphingobacteriaceae 

EF446147, Pedobacter terricola, Sphingobacteriaceae 

HM051286, Pedobacter arcticus, Sphingobacteriaceae 

AJ438173, Pedobacter saltans, Sphingobacteriaceae 

EU585748, Pedobacter glucosidilyticus, Sphingobacteriaceae 

AJ438175, Flavobacterium mizutaii, Flavobacteriaceae 

AB249372, Sphingobacterium daejeonense, Sphingobacteriaceae 

FN908501, Sphingobacterium lactis, Sphingobacteriaceae 

GQ339910, Sphingobacterium bambusae, Sphingobacteriaceae 

FJ816788, Sphingobacterium shayense, Sphingobacteriaceae 

GQ988781, Sphingobacterium wenxiniae, Sphingobacteriaceae 

AB244764, Sphingobacterium composti, Sphingobacteriaceae 

FN908502, Sphingobacterium alimentarium, Sphingobacteriaceae 

JF731241, Sphingobacterium nematocida, Sphingobacteriaceae 

EF090267, Sphingobacterium spiritivorum, type sp., Sphingobacteriaceae 

AB100738, Sphingobacterium multivorum, Sphingobacteriaceae 

EU046272, Sphingobacterium siyangense, Sphingobacteriaceae 

AY787820, Sphingobacterium canadense, Sphingobacteriaceae 

AJ438177, Sphingobacterium thalpophilum, Sphingobacteriaceae 

EU364817, Sphingobacterium anhuiense, Sphingobacteriaceae 

AB361248, Sphingobacterium kitahiroshimense, Sphingobacteriaceae 

AJ438176, Sphingobacterium faecium, Sphingobacteriaceae 

AB267716, Olivibacter ginsengisoli, Sphingobacteriaceae 

AB267714, Olivibacter terrae, Sphingobacteriaceae 

AB267715, Olivibacter soli, Sphingobacteriaceae 

AM407725, Pseudosphingobacterium domesticum, type sp., Sphingobacteriaceae 

DQ680836, Parapedobacter koreensis, type sp., Sphingobacteriaceae 

EF151805, Parapedobacter soli, Sphingobacteriaceae 

FJ754320, Parapedobacter luteus, Sphingobacteriaceae 

DQ421387, Olivibacter sitiensis, type sp., Sphingobacteriaceae 

HM021726, Olivibacter oleidegradans, Sphingobacteriaceae 

GQ161990, Pedobacter bauzanensis, Sphingobacteriaceae 

AB267720, Pedobacter composti, Sphingobacteriaceae 

EU109726, Pedobacter oryzae, Sphingobacteriaceae 

HM627214, Mucilaginibacter angelicae, Sphingobacteriaceae 

HM748604, Mucilaginibacter polysacchareus, Sphingobacteriaceae 

EU672804, Mucilaginibacter gossypii, Sphingobacteriaceae 

EU672805, Mucilaginibacter gossypiicola, Sphingobacteriaceae 

EU109722, Mucilaginibacter oryzae, Sphingobacteriaceae 

AB330392, Mucilaginibacter kameinonensis, Sphingobacteriaceae 

GQ144415, Mucilaginibacter myungsuensis, Sphingobacteriaceae 

EU729366, Mucilaginibacter ximonensis, Sphingobacteriaceae 

AB267719, Mucilaginibacter composti, Sphingobacteriaceae 

GU139697, Mucilaginibacter dorajii, Sphingobacteriaceae 

AM490403, Mucilaginibacter gracilis, Sphingobacteriaceae 

AM490402, Mucilaginibacter paludis, type sp., Sphingobacteriaceae 

HM061614, Mucilaginibacter boryungensis, Sphingobacteriaceae 

FN400859, Mucilaginibacter mallensis, Sphingobacteriaceae 

DQ234446, Mucilaginibacter lappiensis, Sphingobacteriaceae 

JF701183, Mucilaginibacter soli, Sphingobacteriaceae 

HQ455786, Mucilaginibacter lutimaris, Sphingobacteriaceae 

EU747841, Mucilaginibacter rigui, Sphingobacteriaceae 

FN400860, Mucilaginibacter frigoritolerans, Sphingobacteriaceae 

AB267717, Mucilaginibacter daejeonensis, Sphingobacteriaceae 

AB078046, Solitalea canadensis, Sphingobacteriaceae 

EU787448, Solitalea koreensis, type sp., Sphingobacteriaceae 

Cytophagaceae and Cyclobacteriaceae (81) 

Cyclobacteriaceae (37) 

AJ744861, Aquiflexum balticum, type sp., Cyclobacteriaceae 

FN421478, Fontibacter flavus, type sp., Cyclobacteriaceae 

FM883672, Indibacter alkaliphilus, type sp., Cyclobacteriaceae 

EU685336, Belliella pelovolcani, Cyclobacteriaceae 

AJ564643, Belliella baltica, type sp., Cyclobacteriaceae 

FM991866, Nitritalea halalkaliphila, type sp., Cyclobacteriaceae 

DQ112660, Rhodonellum psychrophilum, type sp., Cytophagaceae 

GU254164, Litoribacter ruber, type sp., Cytophagaceae

AY960985, Cyclobacterium amurskyense, Cyclobacteriaceae 

AY533665, Cyclobacterium marinum, type sp., Cyclobacteriaceae 

DQ534063, Cyclobacterium lianum, Cyclobacteriaceae 

DQ185611, Echinicola pacifica, type sp., Cyclobacteriaceae 

DQ645421, Echinicola vietnamensis, Cyclobacteriaceae 

GU339180, Echinicola jeungdonensis, Cyclobacteriaceae 

AY533663, Algoriphagus marincola, Cyclobacteriaceae 

EF488486, Algoriphagus hitonicola, Cyclobacteriaceae 

EF392675, Algoriphagus vanfongensis, Cyclobacteriaceae 

AY264840, Algoriphagus ornithinivorans, Cyclobacteriaceae 

GU072591, Algoriphagus faecimaris, Cyclobacteriaceae 

HQ401024, Algoriphagus namhaensis, Cyclobacteriaceae 

AJ575265, Algoriphagus chordae, Cyclobacteriaceae 

AY835922, Algoriphagus locisalis, Cyclobacteriaceae 

AJ575263, Algoriphagus winogradskyi, Cyclobacteriaceae 

AY699794, Algoriphagus yeomjeoni, Cyclobacteriaceae 

AJ575264, Algoriphagus aquimarinus, Cyclobacteriaceae 

AJ608641, Algoriphagus ratkowskyi, type sp., Cyclobacteriaceae 

AJ577141, Algoriphagus antarcticus, Cyclobacteriaceae 

AY264839, Algoriphagus halophilus, Cyclobacteriaceae 

FJ669216, Algoriphagus lutimaris, Cyclobacteriaceae 

AB197852, Algoriphagus boritolerans, Cyclobacteriaceae 

EF217418, Algoriphagus jejuensis, Cyclobacteriaceae 

DQ178979, Algoriphagus terrigena, Cyclobacteriaceae 

AJ717393, Algoriphagus alkaliphilus, Cyclobacteriaceae 

EU161637, Algoriphagus aquaeductus, Cyclobacteriaceae 

EU313811, Algoriphagus aquatilis, Cyclobacteriaceae 

AY264838, Algoriphagus mannitolivorans, Cyclobacteriaceae 

FJ231215, Algoriphagus olei, Cyclobacteriaceae 

HM140980, Mongoliitalea lutea, type sp., Cyclobacteriaceae 

EU360597, Dyadobacter alkalitolerans, Cytophagaceae 

GQ131577, Dyadobacter psychrophilus, Cytophagaceae 

AB245369, Dyadobacter ginsengisoli, Cytophagaceae 

EF017660, Dyadobacter koreensis, Cytophagaceae 

AB272165, Persicitalea jodogahamensis, type sp., Cytophagaceae 

AJ619978, Dyadobacter hamtensis, Cytophagaceae 

AJ821885, Dyadobacter crusticola, Cytophagaceae 

DQ335125, Dyadobacter beijingensis, Cytophagaceae 

GQ241324, Dyadobacter soli, Cytophagaceae 

AF137029, Dyadobacter fermentans, type sp., Cytophagaceae 

DQ372980, Runella defluvii, Cytophagaceae 

DQ372985, Runella limosa, Cytophagaceae 

AF137381, Runella zeae, Cytophagaceae 

M62786, Runella slithyformis, type sp., Cytophagaceae 

AM000023, Spirosoma linguale, type sp., Cytophagaceae 

EF507900, Spirosoma rigui, Cytophagaceae 

EF451726, Spirosoma luteum, Cytophagaceae 

EF451725, Spirosoma spitsbergense, Cytophagaceae 

EU370956, Spirosoma panaciterrae, Cytophagaceae 

GQ355622, Fibrisoma limi, type sp., Cytophagaceae 

GQ141052, Fibrella aestuarina, type sp., Cytophagaceae 

EF635010, Rudanella lutea, type sp., Cytophagaceae 

FN391025, Larkinella arboricola, Cytophagaceae 

AM000022, Larkinella insperata, type sp., Cytophagaceae 

GQ246692, Larkinella bovis, Cytophagaceae 

AJ535729, Arcicella aquatica, type sp., Cytophagaceae 

AM948969, Arcicella rosea, Cytophagaceae 

FJ593908, Arcicella aurantiaca, Cytophagaceae 

M62787, Flectobacillus major, type sp., Cytophagaceae 

EU420062, Flectobacillus roseus, Cytophagaceae 

DQ112352, Flectobacillus lacus, Cytophagaceae 

FJ177421, Siphonobacter aquaeclarae, type sp., Cytophagaceae 

AB245370, Emticicia ginsengisoli, Cytophagaceae 

AY904352, Emticicia oligotrophica, type sp., Cytophagaceae 

AY854022, Leadbetterella byssophila, type sp., Cytophagaceae 

AB078065, Flexibacter ruber, Cytophagaceae 

GU117702, Ohtaekwangia koreensis, type sp., Unclassified Bacteroidetes 

GU117703, Ohtaekwangia kribbensis, Unclassified Bacteroidetes 

M62794, Flexibacter flexilis, type sp., Cytophagaceae 

D12658, Cytophaga aurantiaca, Cytophagaceae 

CP000383, Cytophaga hutchinsonii , type sp., Cytophagaceae 

AJ310654, Sporocytophaga myxococcoides, type sp., Cytophagaceae 

EU004198, Rhodocytophaga aerolata, type sp., Cytophagaceae 

FN396961, Cesiribacter andamanensis, type sp., Flammeovirgaceae 

HM775387, Cesiribacter roseus, Flammeovirgaceae 

AB078072, Marivirga tractuosa, type sp., Flammeovirgaceae 

AB078081, Marivirga sericea, Flammeovirgaceae 

AB058919, Reichenbachiella agariperforans, type sp., Flammeovirgaceae 

GU143096, Reichenbachiella faecimaris, Flammeovirgaceae 

DQ836305, Fulvivirga kasyanovii, type sp., Flammeovirgaceae 

DQ080995, Fabibacter halotolerans, type sp., Flammeovirgaceae 

DQ080996, Roseivirga spongicola, Flammeovirgaceae 

AY753206, Roseivirga echinicomitans, Flammeovirgaceae 

AY608410, Roseivirga ehrenbergii, type sp., Flammeovirgaceae 

AB078079, Marinoscillum furvescens, Flammeovirgaceae 

DQ660388, Marinoscillum pacificum, type sp., Flammeovirgaceae 

AM746475, Ekhidna lutea, type sp., Cytophagaceae 

Flammeovirgaceae (13) 

AB078048, Flexibacter elegans, Cytophagaceae 

AB078062, Flexibacter roseolus, Cytophagaceae 

AB078080, Microscilla marina, type sp., Cytophagaceae 

AB247553, Flammeovirga aprica, type sp., Flammeovirgaceae 

AB078078, Flammeovirga arenaria, Flammeovirgaceae 

AB251933, Flammeovirga kamogawensis, Flammeovirgaceae 

HQ412594, Flammeovirga pacifica, Flammeovirgaceae 

AB247554, Flammeovirga yaeyamensis, Flammeovirgaceae 

AB276355, Perexilibacter aurantiacus, type sp., Flammeovirgaceae 

AB359907, Limibacter armeniacum, type sp., Flammeovirgaceae 

AB255370, Sediminitomix flava, type sp., Flammeovirgaceae 

AB078077, Flexithrix dorotheae, type sp., Flammeovirgaceae 

AB265192, Rapidithrix thailandica, type sp., Flammeovirgaceae 

AB260929, Persicobacter diffluens, type sp., Flammeovirgaceae 

AB260934, Persicobacter psychrovividus, Flammeovirgaceae 

AB572584, Aureibacter tunicatorum, type.sp, Flammeovirgaceae 

AB078056, Flexibacter litoralis, Cytophagaceae 

AB078059, Flexibacter polymorphus, Cytophagaceae 

Y08956, Thermonema rossianum, Flammeovirgaceae 

EU155012, Hymenobacter antarcticus, Cytophagaceae 

GQ454806, Hymenobacter glaciei, Cytophagaceae 

AB251884, Hymenobacter soli, Cytophagaceae 

HM032898, Hymenobacter metalli, Cytophagaceae

HM032897, Hymenobacter flocculans, Cytophagaceae 

DQ888329, Hymenobacter xinjiangensis, Cytophagaceae 

DQ089669, Hymenobacter rigui, Cytophagaceae 

HM032896, Hymenobacter perfusus, Cytophagaceae 

Y18836, Hymenobacter gelipurpurascens, Cytophagaceae 

GU808562, Hymenobacter yonginensis, Cytophagaceae 

DQ177475, Hymenobacter psychrotolerans, Cytophagaceae 

AJ276901, Hymenobacter aerophilus, Cytophagaceae 

GQ131579, Hymenobacter psychrophilus, Cytophagaceae 

Y17356, Hymenobacter actinosclerus, Cytophagaceae 

AJ549285, Hymenobacter norwichensis, Cytophagaceae 

Y18837, Hymenobacter chitinivorans, Cytophagaceae 

GQ454797, Hymenobacter elongatus, Cytophagaceae 

Y18833, Hymenobacter roseosalivarius, type sp., Cytophagaceae 

EU155009, Hymenobacter algoricola, Cytophagaceae 

EU155015, Hymenobacter fastidiosus, Cytophagaceae 

EU370958, Hymenobacter daecheongensis, Cytophagaceae 

EU325941, Hymenobacter deserti, Cytophagaceae 

Y18835, Hymenobacter ocellatus, Cytophagaceae 

EU682684, Adhaeribacter terreus, Cytophagaceae 

AJ626894, Adhaeribacter aquaticus, type sp., Cytophagaceae 

GQ421846, Adhaeribacter aerolatus, Cytophagaceae 

GQ421850, Adhaeribacter aerophilus, Cytophagaceae 

FJ897494, Pontibacter niistensis, Cytophagaceae 

HQ223078, Pontibacter populi, Cytophagaceae 

DQ888330, Pontibacter korlensis, Cytophagaceae 

AM049256, Pontibacter roseus, Cytophagaceae 

AY989908, Pontibacter actiniarum, type sp., Cytophagaceae 

DQ672723, Pontibacter akesuensis, Cytophagaceae 

FJ004994, Pontibacter xinjiangensis, Cytophagaceae 

EU008564, Balneola alkaliphila, Chitinophagaceae 

AY576749, Balneola vulgaris, type sp., Chitinophagaceae 

EF988655, Gracilimonas tropica, type sp., Chitinophagaceae 

Rhodothermaceae (7) 

HM153810, Fodinibius salinus, type sp., Unclassified Sphingobacteriales 

HQ197982, Salinibacter iranicus, Rhodothermaceae 

HQ197983, Salinibacter luteus, Rhodothermaceae 

CP000159, Salinibacter ruber, type sp., Rhodothermaceae 

EU426570, Salisaeta longa, type sp., Rhodothermaceae 

AB545808, Rubricoccus marinus, type sp., Rhodothermaceae 

X80994, Rhodothermus marinus, type sp., Rhodothermaceae 

FJ624399, Rhodothermus profundi, Rhodothermaceae 

Chlorobi (12) 

Chlorobia or Chlorobea (11) 

Y08108, Chlorobium clathratiforme, Chlorobiaceae 

CP000492, Chlorobium phaeobacteroides , Chlorobiaceae 

CP001097, Chlorobium limicola, type sp., Chlorobiaceae 

Y08105, Chlorobium phaeovibrioides, Chlorobiaceae 

CP000096, Chlorobium luteolum, Chlorobiaceae 

M58468, Chlorobaculum tepidum, type sp., Chlorobiaceae 

Y08102, Chlorobaculum thiosulfatiphilum, Chlorobiaceae 

Y10649, Chlorobium chlorovibrioides, Chlorobiaceae 

CP001108, Prosthecochloris aestuarii, type sp., Chlorobiaceae 

M62791, Prosthecochloris vibrioformis, Chlorobiaceae 

AF170103, Chloroherpeton thalassium, type sp., Chlorobiaceae 

AB478415, Ignavibacterium album, type sp., Ignavibacteriaceae 

Verrucomicrobia (34) 

Rubritaleaceae (6) 

AB297805, Rubritalea spongiae, Rubritaleaceae 

AB297806, Rubritalea tangerina, Rubritaleaceae 

DQ302104, Rubritalea marina, type sp., Rubritaleaceae 

AB543683, Rubritalea halochordaticola, Rubritaleaceae 

AB277853, Rubritalea squalenifaciens, Rubritaleaceae 

AB353310, Rubritalea sabuli, Rubritaleaceae 

AB331886, Persicirhabdus sediminis, type sp., Verrucomicrobiaceae 

AB331888, Roseibacillus ishigakijimensis, type sp., Verrucomicrobiaceae 

AB331889, Roseibacillus ponti, Verrucomicrobiaceae 

AB331890, Roseibacillus persicicus, Verrucomicrobiaceae 

AB372852, Haloferula harenae, Verrucomicrobiaceae 

AB372853, Haloferula rosea, type sp., Verrucomicrobiaceae 

AB372854, Haloferula phyci, Verrucomicrobiaceae 

AB372855, Haloferula helveola, Verrucomicrobiaceae 

AB372856, Haloferula sargassicola, Verrucomicrobiaceae 

FJ032193, Haloferula luteola, Verrucomicrobiaceae 

AB331893, Luteolibacter algae, Verrucomicrobiaceae 

AB331895, Luteolibacter pohnpeiensis, type sp., Verrucomicrobiaceae 

AY271254, Akkermansia muciniphila, type sp., Akkermansiaceae 

Verrucomicrobiaceae (6) 

U60014, Prosthecobacter debontii, Verrucomicrobiaceae 

U60015, Prosthecobacter fusiformis, type sp., Verrucomicrobiaceae 

U60012, Prosthecobacter dejongeii, Verrucomicrobiaceae 

AB305640, Prosthecobacter fluviatilis, Verrucomicrobiaceae 

U60013, Prosthecobacter vanneervenii, Verrucomicrobiaceae 

X90515, Verrucomicrobium spinosum, type sp., Verrucomicrobiaceae 

Puniceicoccaceae and Opitutaceae (9) 

AB286016, Pelagicoccus albus, Puniceicoccaceae 

AB286017, Pelagicoccus litoralis, Puniceicoccaceae 

AB286015, Pelagicoccus mobilis, type sp., Puniceicoccaceae 

AB297922, Pelagicoccus croceus, Puniceicoccaceae 

Opitutaceae (2) 

Lentisphaerae (2) 

AF075271, Alterococcus agarolyticus, type sp., Opitutaceae 

AJ229235, Opitutus terrae, type sp., Opitutaceae 

AB292183, Cerasicoccus arenae, type sp., Puniceicoccaceae 

DQ539046, Puniceicoccus vermicola, type sp., Puniceicoccaceae 

AB266750, Coraliomargarita akajimensis, type sp., Puniceicoccaceae 

AY390428, Lentisphaera araneosa, type sp., Lentisphaeraceae 

AY049713, Victivallis vadensis, type sp., Victivallaceae 

Chlamydiae (13) 

Chlamydiaceae (9) 

D85709, Chlamydophila abortus, Chlamydiaceae

Planctomycetes (15) 

D85708, Chlamydophila caviae, Chlamydiaceae 

U68447, Chlamydophila psittaci, type sp., Chlamydiaceae 

D85701, Chlamydophila felis, Chlamydiaceae 

D89067, Chlamydia trachomatis, type sp., Chlamydiaceae 

U73110, Chlamydia suis, Chlamydiaceae 

D85718, Chlamydia muridarum, Chlamydiaceae 

D88317, Chlamydophila pecorum, Chlamydiaceae 

Z49873, Chlamydophila pneumoniae, Chlamydiaceae 

Parachlamydiaceae (2) 

AF177275, Neochlamydia hartmannellae, type sp., Parachlamydiaceae 

Y07556, Parachlamydia acanthamoebae, type sp., Parachlamydiaceae 

U68460, Simkania negevensis, type sp., Simkaniaceae 

AF042496, Waddlia chondrophila, type sp., Waddliaceae 

AM850678, Singulisphaera acidiphila, type sp., Planctomycetaceae 

FN391026, Singulisphaera rosea, Planctomycetaceae 

DQ986200, Aquisphaera giovannonii, type sp., Planctomycetaceae 

CP002353, Isosphaera pallida, type sp., Planctomycetaceae 

AM162406, Zavarzinella formosa, type sp., Planctomycetaceae 

JN880417, Telmatocola sphagniphila, type sp., Planctomycetaceae 

X56305, Gemmata obscuriglobus, type sp., Planctomycetaceae 

X62912, Blastopirellula marina, type sp., Planctomycetaceae 

CP001848, Pirellula staleyi, Planctomycetaceae 

BX294149, Rhodopirellula baltica, type sp., Planctomycetaceae 

CP002546, Planctomyces brasiliensis, Planctomycetaceae 

AJ231184, Planctomyces maris, Planctomycetaceae 

X62911, Planctomyces limnophilus, Planctomycetaceae 

AM162407, Schlesneria paludicola, type sp., Planctomycetaceae 

AB447464, Phycisphaera mikurensis, type sp., Phycisphaeraceae 

Fibrobacteres (3) 

GU269553, Fibrobacter succinogenes subsp. elongatus, Fibrobacteraceae 

AJ496032, Fibrobacter succinogenes subsp. succinogenes, type sp., Fibrobacteraceae 

AJ496284, Fibrobacter intestinalis, Fibrobacteraceae 

AB072735, Gemmatimonas aurantiaca, type sp., Gemmatimonadaceae 

AJ430587, Caldithrix abyssi, type sp., Unclassified Deferribacterales 

FJ999729, Caldithrix palaeochoryensis, Unclassified Deferribacterales 

Deinococcus−Thermus (74) 

Deinococcales (48) 

Deinococcaceae (47) 

Thermaceae (26) 

AB087288, Deinococcus aerius, Deinococcaceae 

AB087287, Deinococcus aetherius, Deinococcaceae 

AY743264, Deinococcus apachensis, Deinococcaceae 

CP000359, Deinococcus geothermalis , Deinococcaceae 

Y13041, Deinococcus murrayi, Deinococcaceae 

AY743262, Deinococcus hopiensis, Deinococcaceae 

AJ585981, Deinococcus frigens, Deinococcaceae 

AJ585984, Deinococcus saxicola, Deinococcaceae 

AJ585986, Deinococcus marmoris, Deinococcaceae 

Y11334, Deinococcus radiopugnans, Deinococcaceae 

EU622978, Deinococcus aerolatus, Deinococcaceae 

EU622979, Deinococcus aerophilus, Deinococcaceae 

DQ344634, Deinococcus yunweiensis, Deinococcaceae 

DQ017708, Deinococcus aquaticus, Deinococcaceae 

AB264134, Deinococcus depolymerans, Deinococcaceae 

DQ017709, Deinococcus caeni, Deinococcaceae 

Y11332, Deinococcus radiodurans, type sp., Deinococcaceae 

EU025028, Deinococcus wulumuqiensis, Deinococcaceae 

AJ549111, Deinococcus indicus, Deinococcaceae 

Y11329, Deinococcus grandis, Deinococcaceae 

JF806527, Deinococcus daejeonensis, Deinococcaceae 

AY743256, Deinococcus hohokamensis, Deinococcaceae 

AY743259, Deinococcus navajonensis, Deinococcaceae 

AY876378, Deinococcus deserti, Deinococcaceae 

AM940971, Deinococcus aquatilis, Deinococcaceae 

AY941086, Deinococcus ficus, Deinococcaceae 

EU427464, Deinococcus gobiensis, Deinococcaceae 

HM214546, Deinococcus reticulitermitis, Deinococcaceae 

EU626561, Deinococcus xinjiangensis, Deinococcaceae 

DQ683348, Deinococcus piscis, Deinococcaceae 

Y11331, Deinococcus proteolyticus, Deinococcaceae 

Y11333, Deinococcus radiophilus, Deinococcaceae 

EF635408, Deinococcus alpinitundrae, Deinococcaceae 

AB265180, Deinococcus aquiradiocola, Deinococcaceae 

EF635406, Deinococcus claudionis, Deinococcaceae 

EF635407, Deinococcus altitudinis, Deinococcaceae 

EF635404, Deinococcus radiomollis, Deinococcaceae 

AY743283, Deinococcus sonorensis, Deinococcaceae 

AY743274, Deinococcus maricopensis, Deinococcaceae 

DQ883809, Deinococcus cellulosilyticus, Deinococcaceae 

AB264136, Deinococcus roseus, Deinococcaceae 

AB264135, Deinococcus misasensis, Deinococcaceae 

AY743280, Deinococcus papagonensis, Deinococcaceae 

AY743279, Deinococcus yavapaiensis, Deinococcaceae 

EF141348, Deinococcus peraridilitoris, Deinococcaceae 

AY743277, Deinococcus pimensis, Deinococcaceae 

AM988777, Deinobacterium chartae, type sp., Deinococcaceae 

DQ022076, Truepera radiovictrix, type sp., Trueperaceae 

EU247889, Thermus arciformis, Thermaceae 

EU753247, Thermus islandicus, Thermaceae 

L09663, Thermus aquaticus, type sp., Thermaceae 

Z15062, Thermus brockianus, Thermaceae 

Y18406, Thermus igniterrae, Thermaceae 

Y18411, Thermus antranikianii, Thermaceae 

AF032127, Thermus scotoductus, Thermaceae 

EU701067, Thermus composti, Thermaceae 

X07998, Thermus thermophilus, Thermaceae 

FR749951, Thermus filiformis, Thermaceae 

Y18416, Thermus oshimai, Thermaceae 

EU247891, Meiothermus cateniformans, Thermaceae 

AF418001, Meiothermus taiwanensis, Thermaceae 

Z15059, Meiothermus ruber, type sp., Thermaceae 

Y13594, Meiothermus cerbereus, Thermaceae 

FN178496, Meiothermus rufus, Thermaceae 

GU584097, Meiothermus granaticius, Thermaceae

Nitrospira (8) 

Actinobacteria (2449) 

AB586707, Meiothermus hypogaeus, Thermaceae 

X84212, Meiothermus chliarophilus, Thermaceae 

AJ871168, Meiothermus timidus, Thermaceae 

CP002042, Meiothermus silvanus, Thermaceae 

AB079382, Marinithermus hydrothermalis, type sp., Thermaceae 

AB107956, Oceanithermus desulfurans, Thermaceae 

AJ430586, Oceanithermus profundus, type sp., Thermaceae 

HM856631, Rhabdothermus arcticus, type sp., Thermaceae 

AJ507298, Vulcanithermus mediatlanticus, type sp., Thermaceae 

X96726, Thermodesulfovibrio islandicus, Nitrospiraceae 

AB231858, Thermodesulfovibrio yellowstonii, type sp., Nitrospiraceae 

AB231857, Thermodesulfovibrio thiophilus, Nitrospiraceae 

AB021302, Thermodesulfovibrio aggregans, Nitrospiraceae 

EF081294, Thermodesulfovibrio hydrogeniphilus, Nitrospiraceae 

AF356829, Leptospirillum ferriphilum, Nitrospiraceae 

X86776, Leptospirillum ferrooxidans, type sp., Nitrospiraceae 

X82558, Nitrospira moscoviensis, Nitrospiraceae 

Micrococcaceae and Bifidobacteriaceae (157) 

Bifidobacteriaceae (53) 

M58733, Bifidobacterium coryneforme, Bifidobacteriaceae 

D86188, Bifidobacterium indicum, Bifidobacteriaceae 

FJ858731, Bifidobacterium actinocoloniiforme, Bifidobacteriaceae 

EF187235, Bifidobacterium asteroides, Bifidobacteriaceae 

EU127549, Bifidobacterium bombi, Bifidobacteriaceae 

GU361834, Bifidobacterium thermophilum, Bifidobacteriaceae 

AY148470, Bifidobacterium thermacidophilum subsp. porcinum, Bifidobacteriaceae 

AB016246, Bifidobacterium thermacidophilum subsp. thermacidophilum, Bifidobacteriaceae 

D86190, Bifidobacterium boum, Bifidobacteriaceae 

AB613259, Bifidobacterium reuteri, Bifidobacteriaceae 

D89332, Scardovia inopinata, type sp., Bifidobacteriaceae 

AY278626, Scardovia wiggsiae, Bifidobacteriaceae 

D89331, Parascardovia denticolens, type sp., Bifidobacteriaceae 

AM419460, Alloscardovia omnicolens, type sp., Bifidobacteriaceae 

AB241105, Metascardovia criceti, type sp., Bifidobacteriaceae 

AY174107, Aeriscardovia aeriphila, type sp., Bifidobacteriaceae 

AB241106, Bifidobacterium tsurumiense, Bifidobacteriaceae 

AP009256, Bifidobacterium adolescentis , Bifidobacteriaceae 

FJ611793, Bifidobacterium stercoris, Bifidobacteriaceae 

D86197, Bifidobacterium ruminantium, Bifidobacteriaceae 

D86182, Bifidobacterium angulatum, Bifidobacteriaceae 

D86192, Bifidobacterium merycicum, Bifidobacteriaceae 

AB559503, Bifidobacterium callitrichos, Bifidobacteriaceae 

AF432082, Bifidobacterium catenulatum, Bifidobacteriaceae 

D86187, Bifidobacterium pseudocatenulatum, Bifidobacteriaceae 

D86183, Bifidobacterium dentium, Bifidobacteriaceae 

AB425276, Bifidobacterium kashiwanohense, Bifidobacteriaceae 

AB559505, Bifidobacterium stellenboschense, Bifidobacteriaceae 

AB559506, Bifidobacterium biavatii, Bifidobacteriaceae 

AJ307005, Bifidobacterium scardovii, Bifidobacteriaceae 

U25952, Bifidobacterium bifidum, type sp., Bifidobacteriaceae 

AB050136, Bifidobacterium animalis subsp. lactis, Bifidobacteriaceae 

D86185, Bifidobacterium animalis subsp. animalis, Bifidobacteriaceae 

D86186, Bifidobacterium choerinum, Bifidobacteriaceae 

D86194, Bifidobacterium pseudolongum subsp. globosum, Bifidobacteriaceae 

D86195, Bifidobacterium pseudolongum subsp. pseudolongum, Bifidobacteriaceae 

D86193, Bifidobacterium magnum, Bifidobacteriaceae 

GU361818, Bifidobacterium cuniculi, Bifidobacteriaceae 

D86189, Bifidobacterium gallicum, Bifidobacteriaceae 

M58739, Bifidobacterium longum subsp. longum, Bifidobacteriaceae 

M58743, Bifidobacterium longum subsp. suis, Bifidobacteriaceae 

D86184, Bifidobacterium longum subsp. infantis, Bifidobacteriaceae 

AB559504, Bifidobacterium saguini, Bifidobacteriaceae 

AB006658, Bifidobacterium breve, Bifidobacteriaceae 

D86191, Bifidobacterium gallinarum, Bifidobacteriaceae 

D89328, Bifidobacterium saeculare, Bifidobacteriaceae 

D86196, Bifidobacterium pullorum, Bifidobacteriaceae 

M58744, Gardnerella vaginalis, type sp., Bifidobacteriaceae 

D89378, Bifidobacterium subtile, Bifidobacteriaceae 

M58741, Bifidobacterium minimum, Bifidobacteriaceae 

FJ858736, Bifidobacterium bohemicum, Bifidobacteriaceae 

AB433856, Bifidobacterium mongoliense, Bifidobacteriaceae 

AY174108, Bifidobacterium psychraerophilum, Bifidobacteriaceae 

EU086805, Arthrobacter sanguinis, Micrococcaceae 

AJ812213, Acaricomes phytoseiuli, type sp., Micrococcaceae 

AF180950, Renibacterium salmoninarum, type sp., Micrococcaceae 

AB071950, Arthrobacter russicus, Micrococcaceae 

GQ406811, Arthrobacter livingstonensis, Micrococcaceae 

GU784867, Arthrobacter cryoconiti, Micrococcaceae 

AJ640198, Arthrobacter stackebrandtii, Micrococcaceae 

GQ227413, Arthrobacter alpinus, Micrococcaceae 

AB588633, Arthrobacter psychrochitiniphilus, Micrococcaceae 

AF134179, Arthrobacter psychrolactophilus, Micrococcaceae 

AM176541, Arthrobacter phenanthrenivorans, Micrococcaceae 

X80741, Arthrobacter polychromogenes, Micrococcaceae 

X83408, Arthrobacter oxydans, Micrococcaceae 

AF330692, Arthrobacter scleromae, Micrococcaceae 

AJ278870, Arthrobacter roseus, Micrococcaceae 

AM409361, Arthrobacter defluvii, Micrococcaceae 

AB248526, Arthrobacter niigatensis, Micrococcaceae 

FN673551, Arthrobacter equi, Micrococcaceae 

AF102267, Arthrobacter chlorophenolicus, Micrococcaceae 

AF235091, Arthrobacter sulfonivorans, Micrococcaceae 

AM039435, Arthrobacter ramosus, Micrococcaceae 

X80744, Arthrobacter ureafaciens, Micrococcaceae 

X80743, Arthrobacter nicotinovorans, Micrococcaceae 

X83406, Arthrobacter histidinolovorans, Micrococcaceae 

JQ955626, Corynebacterium ilicis, Corynebacteriaceae 

X83407, Arthrobacter ilicis, Micrococcaceae 

X83405, Arthrobacter aurescens, Micrococcaceae 

AJ512504, Arthrobacter nitroguajacolicus, Micrococcaceae 

AJ639826, Arthrobacter castelli, Micrococcaceae 

AJ639827, Arthrobacter pigmenti, Micrococcaceae 

AJ315070, Arthrobacter monumenti, Micrococcaceae 

X80737, Arthrobacter citreus, Micrococcaceae 

AJ316140, Arthrobacter gandavensis, Micrococcaceae 

AY116496, Arthrobacter koreensis, Micrococcaceae

AJ243422, Arthrobacter luteolus, Micrococcaceae 

AB248527, Arthrobacter alkaliphilus, Micrococcaceae 

AF235090, Arthrobacter methylotrophus, Micrococcaceae 

AB279890, Arthrobacter humicola, Micrococcaceae 

AB279889, Arthrobacter oryzae, Micrococcaceae 

AJ639830, Arthrobacter parietis, Micrococcaceae 

AJ315069, Arthrobacter tumbae, Micrococcaceae 

DQ097525, Arthrobacter subterraneus, Micrococcaceae 

AJ639829, Arthrobacter tecti, Micrococcaceae 

AB537168, Arthrobacter flavus, Micrococcaceae 

X80748, Arthrobacter agilis, Micrococcaceae 

X80740, Arthrobacter pascens, Micrococcaceae 

X80736, Arthrobacter globiformis, type sp., Micrococcaceae 

X93353, Arthrobacter woluwensis, Micrococcaceae 

AJ616763, Arthrobacter psychrophenolicus, Micrococcaceae 

X83409, Arthrobacter sulfureus, Micrococcaceae 

AJ606062, Arthrobacter kerguelensis, Micrococcaceae 

AM931709, Arthrobacter antarcticus, Micrococcaceae 

AJ606061, Arthrobacter gangotriensis, Micrococcaceae 

Y15885, Arthrobacter rhombi, Micrococcaceae 

DQ372937, Zhihengliuella halotolerans, type sp., Micrococcaceae 

EU847536, Zhihengliuella alba, Micrococcaceae 

GQ406812, Arthrobacter cryotolerans, Micrococcaceae 

AJ617482, Arthrobacter mysorens, Micrococcaceae 

X83410, Arthrobacter uratoxydans, Micrococcaceae 

X80739, Arthrobacter nicotianae, Micrococcaceae 

AJ609628, Arthrobacter arilaitensis, Micrococcaceae 

AJ551163, Arthrobacter ardleyensis, Micrococcaceae 

AJ609630, Arthrobacter bergerei, Micrococcaceae 

X80745, Arthrobacter protophormiae, Micrococcaceae 

EF660748, Arthrobacter soli, Micrococcaceae 

D88211, Arthrobacter creatinolyticus, Micrococcaceae 

AY376164, Citricoccus alkalitolerans, Micrococcaceae 

AJ344143, Citricoccus muralis, type sp., Micrococcaceae 

FM992367, Citricoccus parietis, Micrococcaceae 

EU305672, Citricoccus zhacaiensis , Micrococcaceae 

GU797177, Citricoccus nitrophenolicus, Micrococcaceae 

DQ491453, Micrococcus flavus, Micrococcaceae 

AJ536198, Micrococcus luteus, type sp., Micrococcaceae 

FJ214355, Micrococcus yunnanensis, Micrococcaceae 

AJ005932, Micrococcus antarcticus, Micrococcaceae 

EU005372, Micrococcus endophyticus, Micrococcaceae 

X80750, Micrococcus lylae, Micrococcaceae 

FJ423763, Micrococcus terreus, Micrococcaceae 

FN673681, Micrococcus lactis, Micrococcaceae 

EU939716, Zhihengliuella aestuarii, Micrococcaceae 

AB248533, Sinomonas albida, Micrococcaceae 

X80746, Sinomonas atrocyanea, Micrococcaceae 

HQ605707, Sinomonas soli, Micrococcaceae 

EU370704, Sinomonas flava, type sp., Micrococcaceae 

AB248531, Sinomonas echigonensis, Micrococcaceae 

AY684123, Yaniella flava, Micrococcaceae 

AY228479, Yaniella halotolerans, type sp., Micrococcaceae 

FJ871122, Yaniella fodinae, Micrococcaceae 

FN554542, Auritidibacter ignavus, type sp., Micrococcaceae 

AJ243421, Arthrobacter albus, Micrococcaceae 

X93354, Arthrobacter cumminsii, Micrococcaceae 

AY226510, Nesterenkonia xinjiangensis, Micrococcaceae 

EU566871, Nesterenkonia alba, Micrococcaceae 

AY574575, Nesterenkonia aethiopica, Micrococcaceae 

EF680886, Nesterenkonia flava, Micrococcaceae 

AJ290397, Nesterenkonia lacusekhoensis, Micrococcaceae 

X80747, Nesterenkonia halobia, type sp., Micrococcaceae 

AY820953, Nesterenkonia halophila, Micrococcaceae 

AY226508, Nesterenkonia halotolerans, Micrococcaceae 

AY588277, Nesterenkonia sandarakina, Micrococcaceae 

AY928901, Nesterenkonia jeotgali, Micrococcaceae 

AY588278, Nesterenkonia lutea, Micrococcaceae 

AJ292364, Arthrobacter nasiphocae, Micrococcaceae 

X80738, Arthrobacter crystallopoietes, Micrococcaceae 

Brevibacteriaceae (24) 

AJ620364, Brevibacterium picturae, Brevibacteriaceae 

FN293377, Brevibacterium sandarakinum, Brevibacteriaceae 

AM421807, Brevibacterium marinum, Brevibacteriaceae 

AY243344, Brevibacterium antiquum, Brevibacteriaceae 

X76566, Brevibacterium aurantiacum, Brevibacteriaceae 

AY228463, Brevibacterium celere, Brevibacteriaceae 

AJ564859, Brevibacterium sanguinis, Brevibacteriaceae 

AJ251418, Brevibacterium casei, Brevibacteriaceae 

Y17962, Brevibacterium avium, Brevibacteriaceae 

AM158906, Brevibacterium oceani, Brevibacteriaceae 

X76565, Brevibacterium epidermidis, Brevibacteriaceae 

X83813, Brevibacterium iodinum, Brevibacteriaceae 

X77451, Brevibacterium linens, type sp., Brevibacteriaceae 

AY243343, Brevibacterium permense, Brevibacteriaceae 

AJ488509, Brevibacterium luteolum, Brevibacteriaceae 

AF133534, Brevibacterium otitidis, Brevibacteriaceae 

X93594, Brevibacterium mcbrellneri, Brevibacteriaceae 

AJ251463, Brevibacterium paucivorans, Brevibacteriaceae 

EU086793, Brevibacterium ravenspurgense, Brevibacteriaceae 

EU868814, Brevibacterium massiliense, Brevibacteriaceae 

DQ344485, Brevibacterium samyangense, Brevibacteriaceae 

EU484189, Brevibacterium pityocampae, Brevibacteriaceae 

EF158852, Brevibacterium album, Brevibacteriaceae 

GU117109, Brevibacterium salitolerans, Brevibacteriaceae 

AJ622907, Kocuria carniphila, Micrococcaceae 

EU286964, Kocuria gwangalliensis, Micrococcaceae 

AY211385, Kocuria marina, Micrococcaceae 

GQ352404, Kocuria salsicia, Micrococcaceae 

X87754, Kocuria varians, Micrococcaceae 

Y16264, Kocuria rhizophila, Micrococcaceae 

FJ607311, Kocuria atrinae, Micrococcaceae 

Y16263, Kocuria palustris, Micrococcaceae 

AB071952, Rothia aeria, Micrococcaceae 

M59055, Rothia dentocariosa, type sp., Micrococcaceae 

X87758, Rothia mucilaginosa, Micrococcaceae 

AJ131121, Rothia nasimurium, Micrococcaceae 

DQ822568, Rothia terrae, Micrococcaceae 

AY043359, Rothia amarae, Micrococcaceae 

DQ979377, Kocuria halotolerans, Micrococcaceae 

FJ607312, Kocuria koreensis, Micrococcaceae 

X80749, Kocuria kristinae, Micrococcaceae

EF602041, Kocuria flava, Micrococcaceae 

AJ278868, Kocuria polaris, Micrococcaceae 

X87756, Kocuria rosea, type sp., Micrococcaceae 

AY987383, Kocuria himachalensis, Micrococcaceae 

DQ059617, Kocuria aegyptia, Micrococcaceae 

DQ531634, Kocuria turfanensis, Micrococcaceae 

Dermabacteraceae (17) 

AB537169, Brachybacterium conglomeratum, Dermabacteraceae 

AJ415377, Brachybacterium paraconglomeratum, Dermabacteraceae 

X83810, Brachybacterium faecium, type sp., Dermabacteraceae 

EU937750, Brachybacterium saurashtrense, Dermabacteraceae 

AJ415384, Brachybacterium sacelli, Dermabacteraceae 

X91031, Brachybacterium alimentarium, Dermabacteraceae 

X91657, Brachybacterium tyrofermentans, Dermabacteraceae 

AJ415378, Brachybacterium fresconis, Dermabacteraceae 

X91034, Dermabacter hominis, type sp., Dermabacteraceae 

EU477050, Helcobacillus massiliensis, type sp., Dermabacteraceae 

EU009865, Devriesea agamarum, type sp., Dermabacteraceae 

DQ822566, Brachybacterium phenoliresistens, Dermabacteraceae 

EF125186, Brachybacterium zhongshanense, Dermabacteraceae 

GQ339911, Brachybacterium squillarum, Dermabacteraceae 

AJ537574, Brachybacterium muris, Dermabacteraceae 

AJ415376, Brachybacterium rhamnosum, Dermabacteraceae 

X91033, Brachybacterium nesterenkovii, Dermabacteraceae 

Demequinaceae (7) 

AB471559, Demequina salsinemoris, Demequinaceae 

AB522643, Demequina globuliformis, Demequinaceae 

AB522641, Demequina aurantiaca, Demequinaceae 

AB522640, Demequina oxidasica, Demequinaceae 

EF451745, Demequina lutea, Demequinaceae 

DQ010160, Demequina aestuarii, type sp., Demequinaceae 

AB639012, Lysinimicrobium mangrovi, type sp., Demequinaceae 

Actinomycetaceae (59) 

X80414, Actinomyces gerencseriae, Actinomycetaceae 

X82450, Actinomyces israelii, Actinomycetaceae 

EF558367, Actinomyces massiliensis, Actinomycetaceae 

AJ697609, Actinomyces dentalis, Actinomycetaceae 

DQ072005, Actinomyces ruminicola, Actinomycetaceae 

AJ507295, Actinomyces oricola, Actinomycetaceae 

X80411, Actinomyces howellii, Actinomycetaceae 

AB545935, Actinomyces oris, Actinomycetaceae 

X82453, Actinomyces viscosus, Actinomycetaceae 

X81062, Actinomyces naeslundii, Actinomycetaceae 

AB545933, Actinomyces johnsonii, Actinomycetaceae 

AJ234039, Actinomyces bowdenii, Actinomycetaceae 

AJ234066, Actinomyces slackii, Actinomycetaceae 

X80412, Actinomyces denticolens, Actinomycetaceae 

EU484334, Actinomyces timonensis, Actinomycetaceae 

X81061, Actinomyces bovis, type sp., Actinomycetaceae 

FN552454, Actinomyces weissii, Actinomycetaceae 

AJ243791, Actinomyces urogenitalis, Actinomycetaceae 

AJ276805, Actinomyces catuli, Actinomycetaceae 

AJ251986, Actinomyces radicidentis, Actinomycetaceae 

AJ540309, Actinomyces graevenitzii, Actinomycetaceae 

Y08828, Actinomyces europaeus, Actinomycetaceae 

FJ617539, Actinomyces hominis, Actinomycetaceae 

AJ249326, Actinomyces coleocanis, Actinomycetaceae 

AM084228, Actinomyces neuii subsp. neuii, Actinomycetaceae 

AM084229, Actinomyces neuii subsp. anitratus, Actinomycetaceae 

AJ428402, Varibaculum cambriense, type sp., Actinomycetaceae 

AJ427624, Mobiluncus curtisii subsp. holmesii, Actinomycetaceae 

AJ318408, Mobiluncus curtisii subsp. curtisii, type sp., Actinomycetaceae 

AJ318410, Mobiluncus mulieris, Actinomycetaceae 

FJ234421, Actinomyces naturae, Actinomycetaceae 

X78719, Actinomyces radingae, Actinomycetaceae 

X69616, Actinomyces hyovaginalis, Actinomycetaceae 

AJ277385, Actinomyces suimastitidis, Actinomycetaceae 

AJ404889, Actinomyces funkei, Actinomycetaceae 

X80413, Actinomyces georgiae, Actinomycetaceae 

X82451, Actinomyces meyeri, Actinomycetaceae 

AJ234040, Actinomyces odontolyticus, Actinomycetaceae 

AJ421779, Actinomyces cardiffensis, Actinomycetaceae 

AJ427451, Actinomyces vaccimaxillae, Actinomycetaceae 

X78720, Actinomyces turicensis, Actinomycetaceae 

AJ243891, Actinomyces canis, Actinomycetaceae 

AF433168, Actinomyces hongkongensis, Actinomycetaceae 

AJ276405, Actinomyces marimammalium, Actinomycetaceae 

X82448, Actinomyces hordeovulneris, Actinomycetaceae 

AJ508455, Actinomyces nasicola, Actinomycetaceae 

AB305159, Trueperella abortisuis, Actinomycetaceae 

X79224, Trueperella bernardiae, Actinomycetaceae 

X79225, Trueperella pyogenes, type sp., Actinomycetaceae 

AJ879696, Trueperella bialowiezense, Actinomycetaceae 

AJ879697, Trueperella bonasi, Actinomycetaceae 

AF487679, Actinobaculum massiliense, Actinomycetaceae 

S83623, Actinobaculum suis, type sp., Actinomycetaceae 

Y12329, Actinobaculum schaalii, Actinomycetaceae 

AJ439453, Actinobaculum urinale, Actinomycetaceae 

FR749960, Arcanobacterium phocae, Actinomycetaceae 

AJ250959, Arcanobacterium pluranimalium, Actinomycetaceae 

AJ234059, Arcanobacterium haemolyticum, type sp., Actinomycetaceae 

AJ300767, Arcanobacterium hippocoleae, Actinomycetaceae 

FJ969847, Haloactinobacterium album, type sp., Ruaniaceae 

DQ343153, Ruania albidiflava, type sp., Ruaniaceae 

Beutenbergiaceae (4) 

Y18378, Beutenbergia cavernae, type sp., Beutenbergiaceae 

AB522642, Miniimonas arenae, type sp., Beutenbergiaceae 

AB455532, Serinibacter salmoneus, type sp., Beutenbergiaceae 

AJ400627, Salana multivorans, type sp., Beutenbergiaceae 

Bogoriellaceae (7) 

FN356976, Georgenia soli, Bogoriellaceae 

HQ246163, Georgenia daeguensis, Bogoriellaceae 

X94155, Georgenia muralis, type sp., Bogoriellaceae 

DQ203185, Georgenia ruanii, Bogoriellaceae 

AB436534, Georgenia thermotolerans, Bogoriellaceae 

FJ717681, Georgenia halophila, Bogoriellaceae 

Y09911, Bogoriella caseilytica, type sp., Bogoriellaceae

Jonesiaceae (2) 

X78420, Jonesia denitrificans, type sp., Jonesiaceae 

AJ626896, Jonesia quinghaiensis, Jonesiaceae 

Rarobacteraceae (2) 

Y17870, Rarobacter faecitabidus, type sp., Rarobacteraceae 

AB056129, Rarobacter incanus, Rarobacteraceae 

X79451, Sanguibacter inulinus, Sanguibacteraceae 

X79452, Sanguibacter suarezii, Sanguibacteraceae 

X79450, Sanguibacter keddieii, type sp., Sanguibacteraceae 

EF211071, Sanguibacter antarcticus, Sanguibacteraceae 

AJ783958, Sanguibacter marinus, Sanguibacteraceae 

EF547937, Sanguibacter soli, Sanguibacteraceae 

FM995611, Koreibacter algae, type sp., Unclassified Suborder Micrococcineae 

AB445007, Paraoerskovia marina, type sp., Cellulomonadaceae 

AJ314851, Oerskovia paurometabola, Cellulomonadaceae 

X79454, Oerskovia turbata, type sp., Cellulomonadaceae 

AJ314848, Oerskovia jenensis, Cellulomonadaceae 

X83807, Oerskovia enterophila, Cellulomonadaceae 

Promicromonosporaceae (25) 

EU910872, Myceligenerans halotolerans, Promicromonosporaceae 

AY354285, Myceligenerans xiligouense, type sp., Promicromonosporaceae 

FR733716, Myceligenerans crystallogenes, Promicromonosporaceae 

AY789835, Isoptericola halotolerans, Promicromonosporaceae 

FJ469988, Isoptericola chiayiensis, Promicromonosporaceae 

DQ387860, Isoptericola dokdonensis, Promicromonosporaceae 

EU852101, Isoptericola jiangsuensis, Promicromonosporaceae 

AF105422, Xylanimicrobium pachnodae, type sp., Promicromonosporaceae 

AY273185, Xylanibacterium ulmi, type sp., Promicromonosporaceae 

AF403541, Xylanimonas cellulosilytica, type sp., Promicromonosporaceae 

AJ854061, Isoptericola hypogeus, Promicromonosporaceae 

HQ222356, Isoptericola nanjingensis, Promicromonosporaceae 

AJ298873, Isoptericola variabilis, type sp., Promicromonosporaceae 

FJ214352, Promicromonospora xylanilytica, Promicromonosporaceae 

GU434253, Promicromonospora endophytica, Promicromonosporaceae 

AJ487303, Promicromonospora aerolata, Promicromonosporaceae 

AJ487302, Promicromonospora vindobonensis, Promicromonosporaceae 

AM709608, Promicromonospora kroppenstedtii, Promicromonosporaceae 

FN293378, Promicromonospora umidemergens , Promicromonosporaceae 

AB023375, Promicromonospora sukumoe, Promicromonosporaceae 

X83808, Promicromonospora citrea, type sp., Promicromonosporaceae 

AM992980, Promicromonospora flava, Promicromonosporaceae 

EF076760, Cellulosimicrobium terreum, Promicromonosporaceae 

X83809, Cellulosimicrobium cellulans, type sp., Promicromonosporaceae 

AY501364, Cellulosimicrobium funkei, Promicromonosporaceae 

AB489904, Luteimicrobium subarcticum, Unclassified Suborder Micrococcineae 

Cellulomonadaceae (17) 

EU560979, Cellulomonas aerilata, Cellulomonadaceae 

X83804, Cellulomonas cellasea, Cellulomonadaceae 

X83802, Cellulomonas biazotea, Cellulomonadaceae 

X83803, Cellulomonas fimi, Cellulomonadaceae 

AB268586, Cellulomonas chitinilytica, Cellulomonadaceae 

AB166887, Cellulomonas composti, Cellulomonadaceae 

X79461, Cellulomonas gelida, Cellulomonadaceae 

AF064701, Cellulomonas persica, Cellulomonadaceae 

X83801, Cellulomonas uda, Cellulomonadaceae 

AF064702, Cellulomonas iranensis, Cellulomonadaceae 

X79463, Cellulomonas flavigena, type sp., Cellulomonadaceae 

AM902253, Cellulomonas phragmiteti, Cellulomonadaceae 

X82449, Cellulomonas humilata, Cellulomonadaceae 

AY303668, Cellulomonas xylanilytica, Cellulomonadaceae 

AY884570, Cellulomonas terrae, Cellulomonadaceae 

AY501362, Cellulomonas denverensis, Cellulomonadaceae 

X82598, Cellulomonas hominis, Cellulomonadaceae 

Microbacteriaceae (209) 

X77441, Microbacterium lacticum, type sp., Microbacteriaceae 

Y17237, Microbacterium schleiferi, Microbacteriaceae 

AB286029, Microbacterium flavum, Microbacteriaceae 

AY962574, Microbacterium koreense, Microbacteriaceae 

AB234028, Microbacterium aoyamense, Microbacteriaceae 

AB274908, Microbacterium hatanonis, Microbacteriaceae 

AM949677, Microbacterium invictum, Microbacteriaceae 

AB286030, Microbacterium lacus, Microbacteriaceae 

Y17229, Microbacterium aurum, Microbacteriaceae 

AB004721, Microbacterium terregens, Microbacteriaceae 

AB234025, Microbacterium terricola, Microbacteriaceae 

AB248875, Microbacterium pygmaeum, Microbacteriaceae 

AB234027, Microbacterium pumilum, Microbacteriaceae 

AB234026, Microbacterium deminutum, Microbacteriaceae 

AB286028, Microbacterium fluvii, Microbacteriaceae 

AB286027, Microbacterium awajiense, Microbacteriaceae 

Y17230, Microbacterium dextranolyticum, Microbacteriaceae 

Y17234, Microbacterium laevaniformans, Microbacteriaceae 

GQ351351, Microbacterium mitrae, Microbacteriaceae 

AB004726, Microbacterium aurantiacum, Microbacteriaceae 

AB013907, Microbacterium kitamiense, Microbacteriaceae 

AB004725, Microbacterium chocolatum, Microbacteriaceae 

AB004724, Microbacterium ketosireducens, Microbacteriaceae 

AB004720, Microbacterium terrae, Microbacteriaceae 

AM181507, Microbacterium thalassium, Microbacteriaceae 

EF567306, Microbacterium binotii, Microbacteriaceae 

AY376165, Microbacterium halotolerans, Microbacteriaceae 

FN547412, Microbacterium yannicii, Microbacteriaceae 

FN870023, Microbacterium arthrosphaerae, Microbacteriaceae 

AM181504, Microbacterium hominis, Microbacteriaceae 

GQ246683, Microbacterium suwonense, Microbacteriaceae 

EF593038, Microbacterium soli , Microbacteriaceae 

AJ853908, Microbacterium xylanilyticum, Microbacteriaceae 

AB004714, Microbacterium halophilum, Microbacteriaceae 

EU239498, Microbacterium insulae, Microbacteriaceae 

Y17240, Microbacterium trichothecenolyticum, Microbacteriaceae 

Y17232, Microbacterium flavescens, Microbacteriaceae 

X77443, Microbacterium arborescens, Microbacteriaceae 

AB271048, Microbacterium ginsengisoli, Microbacteriaceae 

X77442, Microbacterium imperiale, Microbacteriaceae 

GQ329713, Microbacterium radiodurans, Microbacteriaceae 

AY062021, Microbacterium ulmi, Microbacteriaceae 

AB286020, Microbacterium marinilacus, Microbacteriaceae 

AJ853909, Microbacterium paludicola, Microbacteriaceae 

AB286021, Microbacterium sediminicola, Microbacteriaceae

EF466125, Microbacterium kribbense, Microbacteriaceae 

AF263563, Microbacterium gubbeenense, Microbacteriaceae 

AM158907, Microbacterium indicum, Microbacteriaceae 

X77446, Microbacterium barkeri, Microbacteriaceae 

AM747814, Microbacterium luticocti, Microbacteriaceae 

X77445, Microbacterium testaceum, Microbacteriaceae 

AM778449, Microbacterium aquimaris, Microbacteriaceae 

FJ865214, Microbacterium pseudoresistens, Microbacteriaceae 

Y14699, Microbacterium resistens, Microbacteriaceae 

AJ698726, Microbacterium hydrocarbonoxydans, Microbacteriaceae 

AJ277840, Microbacterium phyllosphaerae, Microbacteriaceae 

AJ249780, Microbacterium foliorum, Microbacteriaceae 

AJ853910, Microbacterium maritypicum, Microbacteriaceae 

Y17227, Microbacterium oxydans, Microbacteriaceae 

X77444, Microbacterium liquefaciens, Microbacteriaceae 

AB004718, Microbacterium luteolum, Microbacteriaceae 

AB004719, Microbacterium saperdae, Microbacteriaceae 

AB004717, Microbacterium keratanolyticum, Microbacteriaceae 

EF623999, Microbacterium profundi, Microbacteriaceae 

AJ698725, Microbacterium oleivorans, Microbacteriaceae 

AY566291, Microbacterium natoriense, Microbacteriaceae 

AJ309929, Microbacterium aerolatum, Microbacteriaceae 

EU873314, Microbacterium ginsengiterrae, Microbacteriaceae 

AJ491806, Microbacterium paraoxydans, Microbacteriaceae 

EU912487, Microbacterium azadirachtae, Microbacteriaceae 

Y17228, Microbacterium arabinogalactanolyticum, Microbacteriaceae 

Y17231, Microbacterium esteraromaticum, Microbacteriaceae 

EU873539, Microbacterium lindanitolerans, Microbacteriaceae 

FJ807673, Microbacterium agarici, Microbacteriaceae 

FJ865215, Microbacterium humi, Microbacteriaceae 

AB012648, Mycetocola lacteus, Microbacteriaceae 

AB012647, Mycetocola saprophilus, type sp., Microbacteriaceae 

AB012646, Mycetocola tolaasinivorans, Microbacteriaceae 

DQ062097, Mycetocola reblochoni, Microbacteriaceae 

AB177868, Plantibacter auratus, Microbacteriaceae 

AJ310417, Plantibacter flavus, type sp., Microbacteriaceae 

AB042094, Okibacterium fritillariae, type sp., Microbacteriaceae 

X77449, Agromyces mediolanus, Microbacteriaceae 

GQ241325, Agromyces soli, Microbacteriaceae 

AF389342, Agromyces aurantiacus, Microbacteriaceae 

FJ529717, Agromyces flavus, Microbacteriaceae 

AB454378, Agromyces tropicus, Microbacteriaceae 

AB023359, Agromyces bracchium, Microbacteriaceae 

AB023356, Agromyces luteolus, Microbacteriaceae 

AY427830, Agromyces ulmi, Microbacteriaceae 

AY618215, Agromyces italicus, Microbacteriaceae 

AY618217, Agromyces lapidis, Microbacteriaceae 

DQ673873, Agromyces allii, Microbacteriaceae 

AY507129, Agromyces salentinus, Microbacteriaceae 

EF363711, Agromyces terreus, Microbacteriaceae 

AY618216, Agromyces humatus, Microbacteriaceae 

AY507128, Agromyces neolithicus, Microbacteriaceae 

FJ972171, Agromyces bauzanensis, Microbacteriaceae 

AY737778, Agromyces subbeticus, Microbacteriaceae 

X77447, Agromyces ramosus, type sp., Microbacteriaceae 

AF503917, Agromyces albus, Microbacteriaceae 

AY277619, Agromyces cerinus subsp. nitratus, Microbacteriaceae 

D45061, Agromyces hippuratus, Microbacteriaceae 

D45060, Agromyces cerinus subsp. cerinus, Microbacteriaceae 

FJ607310, Agromyces atrinae, Microbacteriaceae 

AB023357, Agromyces rhizospherae, Microbacteriaceae 

D45057, Leifsonia aquatica, type sp., Microbacteriaceae 

DQ232612, Leifsonia naganoensis, Microbacteriaceae 

DQ232614, Leifsonia shinshuensis, Microbacteriaceae 

AB016985, Leifsonia xyli subsp. cynodontis, Microbacteriaceae 

EU912483, Leifsonia soli, Microbacteriaceae 

AB278552, Leifsonia lichenia, Microbacteriaceae 

AF116342, Leifsonia poae, Microbacteriaceae 

AB046363, Curtobacterium albidum, Microbacteriaceae 

X77436, Curtobacterium citreum, type sp., Microbacteriaceae 

AB266597, Curtobacterium ammoniigenes, Microbacteriaceae 

AJ312209, Curtobacterium flaccumfaciens, Microbacteriaceae 

AJ310413, Curtobacterium herbarum, Microbacteriaceae 

GU269547, Flavobacterium oceanosedimentum, Flavobacteriaceae 

AJ784400, Curtobacterium pusillum, Microbacteriaceae 

X77437, Curtobacterium luteum, Microbacteriaceae 

EF587758, Curtobacterium ginsengisoli, Microbacteriaceae 

AM494541, Humibacter albus, type sp., Microbacteriaceae 

AB362159, Schumannella luteola, type sp., Microbacteriaceae 

AJ438585, Leifsonia rubra, Microbacteriaceae 

AJ459101, Rhodoglobus vestalii, type sp., Microbacteriaceae 

AJ438586, Rhodoglobus aureus, Microbacteriaceae 

AF539697, Salinibacterium amurskyense, type sp., Microbacteriaceae 

DQ515964, Salinibacterium xinjiangense, Microbacteriaceae 

EF466124, Leifsonia bigeumensis, Microbacteriaceae 

AF159363, Agreia bicolorata, type sp., Microbacteriaceae 

AJ310412, Agreia pratensis, Microbacteriaceae 

AF224722, Subtercola boreus, type sp., Microbacteriaceae 

AF224723, Subtercola frigoramans, Microbacteriaceae 

AJ717385, Microcella alkaliphila, Microbacteriaceae 

AJ717388, Microcella putealis, type sp., Microbacteriaceae 

DQ256087, Yonghaparkia alkaliphila, type sp., Microbacteriaceae 

EF373534, Chryseoglobus frigidaquae, type sp., Microbacteriaceae 

EF466129, Leifsonia kribbensis, Microbacteriaceae 

DQ473536, Herbiconiux ginsengi, type sp., Microbacteriaceae 

FN432340, Herbiconiux solani, Microbacteriaceae 

AB583921, Herbiconiux flava, Microbacteriaceae 

FJ828659, Herbiconiux moechotypicola, Microbacteriaceae 

AM072820, Leucobacter alluvii, Microbacteriaceae 

GU390657, Leucobacter chromiiresistens, Microbacteriaceae 

EU346911, Leucobacter chironomi, Microbacteriaceae 

GQ504012, Leucobacter celer, Microbacteriaceae 

AB012594, Leucobacter albus, Microbacteriaceae 

D45063, Leucobacter komagatae, type sp., Microbacteriaceae 

AJ781047, Leucobacter aridicollis, Microbacteriaceae 

AM040493, Leucobacter iarius, Microbacteriaceae 

GQ246672, Leucobacter denitrificans, Microbacteriaceae 

DQ845457, Leucobacter chromiireducens subsp. solipictus, Microbacteriaceae 

AJ781046, Leucobacter chromiireducens subsp. chromiireducens, Microbacteriaceae 

AM072819, Leucobacter luti, Microbacteriaceae 

FN597581, Leucobacter aerolatus, Microbacteriaceae 

GQ352403, Leucobacter salsicius, Microbacteriaceae 

AB514037, Leucobacter exalbidus, Microbacteriaceae

AM940158, Leucobacter tardus, Microbacteriaceae 

AM900767, Leifsonia pindariensis, Microbacteriaceae 

AB282862, Microterricola viridarii, type sp., Microbacteriaceae 

AM286414, Phycicola gilvus, type sp., Microbacteriaceae 

AB279547, Agrococcus citreus, Microbacteriaceae 

X92492, Agrococcus jenensis, type sp., Microbacteriaceae 

DQ156908, Agrococcus lahaulensis, Microbacteriaceae 

AB279548, Agrococcus baldri, Microbacteriaceae 

GQ504748, Agrococcus carbonis, Microbacteriaceae 

AM396260, Agrococcus jejuensis, Microbacteriaceae 

AM940157, Agrococcus versicolor, Microbacteriaceae 

FJ423764, Agrococcus terreus, Microbacteriaceae 

DQ168427, Agrococcus casei, Microbacteriaceae 

AB378301, Glaciibacter superstes, type sp., Microbacteriaceae 

AM931710, Leifsonia antarctica, Microbacteriaceae 

AM889135, Leifsonia kafniensis, Microbacteriaceae 

GQ406810, Leifsonia psychrotolerans, Microbacteriaceae 

GQ496083, Marisediminicola antarctica, type sp., Microbacteriaceae 

FN666417, Frondihabitans cladoniiphilus, Microbacteriaceae 

DQ525859, Frondihabitans australicus, type sp., Microbacteriaceae 

FM998017, Frondihabitans peucedani, Microbacteriaceae 

Y18807, Frigoribacterium faeni, type sp., Microbacteriaceae 

EF466126, Frigoribacterium mesophilum, Microbacteriaceae 

AM849034, Clavibacter michiganensis subsp. sepedonicus, Microbacteriaceae 

U09761, Clavibacter michiganensis subsp. insidiosus, Microbacteriaceae 

U30254, Clavibacter michiganensis subsp. tessellarius, Microbacteriaceae 

X77435, Clavibacter michiganensis subsp. michiganensis, type sp., Microbacteriaceae 

X77434, Clavibacter michiganensis subsp. nebraskensis, Microbacteriaceae 

AM410684, Rathayibacter iranicus, Microbacteriaceae 

D84127, Rathayibacter toxicus, Microbacteriaceae 

AF159364, Rathayibacter caricis, Microbacteriaceae 

X77439, Rathayibacter rathayi, type sp., Microbacteriaceae 

AM410683, Rathayibacter festucae, Microbacteriaceae 

X77438, Rathayibacter tritici, Microbacteriaceae 

EF467640, Cryobacterium roopkundense, Microbacteriaceae 

AJ544063, Cryobacterium psychrophilum, type sp., Microbacteriaceae 

HQ845193, Cryobacterium luteum, Microbacteriaceae 

HQ845195, Cryobacterium flavum, Microbacteriaceae 

DQ515963, Cryobacterium psychrotolerans, Microbacteriaceae 

GQ406814, Cryobacterium arcticum, Microbacteriaceae 

FJ527819, Amnibacterium kyonggiense, type sp., Microbacteriaceae 

DQ533552, Labedella gwakjiensis, type sp., Microbacteriaceae 

EF466127, Cryobacterium mesophilum, Microbacteriaceae 

AY372075, Klugiella xanthotipulae, type sp., Microbacteriaceae 

AJ306835, Gulosibacter molinativorax, type sp., Microbacteriaceae 

HQ268603, Gulosibacter chungangensis, Microbacteriaceae 

AF300651, Zimmermannella faecalis, Microbacteriaceae 

AB012595, Zimmermannella bifida, Microbacteriaceae 

X77440, Pseudoclavibacter helvolus, type sp., Microbacteriaceae 

FJ514934, Pseudoclavibacter chungangensis, Microbacteriaceae 

AB012590, Zimmermannella alba, Microbacteriaceae 

AF251035, Tropheryma whipplei, type sp., Cellulomonadaceae 

HQ266601, Pseudoclavibacter caeni, Microbacteriaceae 

AB329630, Pseudoclavibacter soli, Microbacteriaceae 

X79458, Actinotalea fermentans, type sp., Cellulomonadaceae 

HQ702749, Cellulomonas carbonis, Cellulomonadaceae 

X92152, Cellulomonas bogoriensis, Cellulomonadaceae 

AJ277650, Ornithinimicrobium humiphilum, type sp., Intrasporangiaceae 

DQ512860, Ornithinimicrobium pekingense, Intrasporangiaceae 

AY636111, Ornithinimicrobium kibberense, Intrasporangiaceae 

HM068886, Serinicoccus chungangensis, Intrasporangiaceae 

EU603762, Serinicoccus profundi, Intrasporangiaceae 

AY382898, Serinicoccus marinus, type sp., Intrasporangiaceae 

AB520822, Branchiibius hedensis, type sp., Dermacoccaceae 

Y14152, Demetria terragena, type sp., Dermacoccaceae 

Dermacoccaceae (6) 

AY894328, Dermacoccus barathri, Dermacoccaceae 

AY894329, Dermacoccus profundi, Dermacoccaceae 

AY894323, Dermacoccus abyssi, Dermacoccaceae 

X87757, Dermacoccus nishinomiyaensis, type sp., Dermacoccaceae 

AB468971, Luteipulveratus mongoliensis , type sp., Dermacoccaceae 

AB539735, Flexivirga alba, type sp., Dermacoccaceae 

EF187228, Calidifontibacter indicus, type.sp, Dermacoccaceae 

FJ528304, Yimella lutea , type sp., Dermacoccaceae 

Dermatophilaceae (7) 

AJ558133, Arsenicicoccus bolidensis, type sp., Intrasporangiaceae 

AB521998, Arsenicicoccus piscis, Intrasporangiaceae 

AJ243919, Austwickia chelonae, type sp., Dermatophilaceae 

AF109792, Kineosphaera limosa, type sp., Dermatophilaceae 

AB550799, Piscicoccus intestinalis, type sp., Dermatophilaceae 

AB550798, Mobilicoccus pelagius, type sp., Dermatophilaceae 

AJ243918, Dermatophilus congolensis, type sp., Dermatophilaceae 

FJ487951, Intrasporangium chromatireducens, Intrasporangiaceae 

Y08539, Janibacter limosus, type sp., Intrasporangiaceae 

AF176948, Janibacter terrae, Intrasporangiaceae 

FR749912, Janibacter hoylei, Intrasporangiaceae 

AY837752, Janibacter anophelis, Intrasporangiaceae 

AB286023, Janibacter corallicola, Intrasporangiaceae 

AJ297722, Kytococcus schroeteri, Dermacoccaceae 

FM992368, Kytococcus aerolatus, Dermacoccaceae 

X87755, Kytococcus sedentarius, type sp., Dermacoccaceae 

AB286025, Marihabitans asiaticum, type sp., Intrasporangiaceae 

AY522568, Janibacter melonis, Intrasporangiaceae 

DQ372707, Kribbia dieselivorans, type sp., Intrasporangiaceae 

AJ566282, Intrasporangium calvum, type sp., Intrasporangiaceae 

HQ204221, Intrasporangium mesophilum, Intrasporangiaceae 

AB282887, Intrasporangium oryzae, type sp., Intrasporangiaceae 

Y11928, Terracoccus luteus, type sp., Intrasporangiaceae 

EU573947, Terrabacter aeriphilus, Intrasporangiaceae 

AB282888, Humibacillus xanthopallidus, type sp., Intrasporangiaceae 

AF005023, Terrabacter tumescens, type sp., Intrasporangiaceae 

EU332827, Terrabacter ginsenosidimutans, Intrasporangiaceae 

FJ717334, Terrabacter carboxydivorans, Intrasporangiaceae 

AM690744, Terrabacter lapilli, Intrasporangiaceae 

EF212039, Terrabacter aerolatus, Intrasporangiaceae 

FJ423552, Terrabacter terrigena, Intrasporangiaceae 

AY944176, Terrabacter terrae, Intrasporangiaceae 

EF493847, Phycicoccus aerophilus, Intrasporangiaceae 

EU332824, Phycicoccus ginsenosidimutans, Intrasporangiaceae 

EF555583, Phycicoccus dokdonensis, Intrasporangiaceae 

EF466128, Phycicoccus bigeumensis, Intrasporangiaceae

DQ345443, Phycicoccus jejuensis, type sp., Intrasporangiaceae 

FJ529696, Phycicoccus cremeus, Intrasporangiaceae 

FJ796074, Ornithinibacter aureus, type sp., Intrasporangiaceae 

EU878005, Fodinibacter luteus, type sp., Intrasporangiaceae 

EF553529, Knoellia aerolata, Intrasporangiaceae 

HQ401007, Knoellia flava, Intrasporangiaceae 

AJ294412, Knoellia sinensis, type sp., Intrasporangiaceae 

AJ294413, Knoellia subterranea, Intrasporangiaceae 

HQ171909, Knoellia locipacati, Intrasporangiaceae 

AF125091, Tetrasphaera australiensis, Intrasporangiaceae 

DQ007321, Tetrasphaera jenkinsii, Intrasporangiaceae 

Y14595, Tetrasphaera veronensis, Intrasporangiaceae 

DQ007320, Tetrasphaera vanveenii, Intrasporangiaceae 

AB030911, Tetrasphaera elongata, Intrasporangiaceae 

AB072496, Tetrasphaera duodecadis, Intrasporangiaceae 

AF125092, Tetrasphaera japonica, type sp., Intrasporangiaceae 

AB537173, Tetrasphaera remsis, Intrasporangiaceae 

AM398397, Lapillicoccus jejuensis, type sp., Intrasporangiaceae 

AB193172, Oryzihumus leptocrescens, type sp., Intrasporangiaceae 

Y17869, Ornithinicoccus hortensis, type sp., Intrasporangiaceae 

AB512285, Angustibacter luteus, type sp., Kineosporiaceae 

Kineosporiaceae (11) 

AB377116, Kineosporia babensis, Kineosporiaceae 

AB377117, Kineosporia mikuniensis, Kineosporiaceae 

AF095336, Kineosporia aurantiaca, type sp., Kineosporiaceae 

AB003932, Kineosporia succinea, Kineosporiaceae 

FJ214362, Kineosporia mesophila, Kineosporiaceae 

FR749986, Kineosporia rhizophila, Kineosporiaceae 

AB003935, Kineosporia rhamnosa, Kineosporiaceae 

DQ200982, Pseudokineococcus marinus, Kineosporiaceae 

FN824365, Pseudokineococcus lusitanus, type.sp, Kineosporiaceae 

FM179321, Aquipuribacter hungaricus, type sp., Intrasporangiaceae 

AY831385, Quadrisphaera granulorum, type sp., Kineosporiaceae 

X77958, Kineococcus aurantiacus, type sp., Kineosporiaceae 

FM210338, Kineococcus rhizosphaerae, Kineosporiaceae 

AF247813, Kineococcus radiotolerans, Kineosporiaceae 

EF667339, Kineococcus gynurae, Kineosporiaceae 

EU543662, Kineococcus xinjiangensis, Kineosporiaceae 

Nakamurellaceae (3) 

DQ321750, Humicoccus flavidus, type sp., Nakamurellaceae 

AM778124, Saxeibacter lacteus, type sp., Nakamurellaceae 

Y08541, Nakamurella multipartita, type sp., Nakamurellaceae 

D85465, Cryptosporangium arvum, type sp., Cryptosporangiaceae 

D85466, Cryptosporangium japonicum, Cryptosporangiaceae 

AJ293746, Cryptosporangium aurantiacum, Cryptosporangiaceae 

AB037007, Cryptosporangium minutisporangium, Cryptosporangiaceae 

EF490376, Fodinicola feengrottensis, type sp., Cryptosporangiaceae 

Sporichthyaceae (2) 

AB006164, Sporichthya brevicatena, Sporichthyaceae 

AB025317, Sporichthya polymorpha, type sp., Sporichthyaceae 

Geodermatophilaceae (8) 

EU181225, Modestobacter marinus, Geodermatophilaceae 

AJ871304, Modestobacter versicolor, Geodermatophilaceae 

Y18646, Modestobacter multiseptatus, type sp., Geodermatophilaceae 

DQ200983, Blastococcus jejuensis, Geodermatophilaceae 

X92356, Geodermatophilus obscurus, type sp., Geodermatophilaceae 

EU438905, Geodermatophilus ruber, Geodermatophilaceae 

L40614, Blastococcus aggregatus, type sp., Geodermatophilaceae 

FN600641, Blastococcus saxobsidens, Geodermatophilaceae 

Streptomycetaceae (563) 

AB184869, Streptomyces bambergiensis, Streptomycetaceae 

DQ026658, Streptomyces prasinus, Streptomycetaceae 

AB184882, Streptomyces cyanoalbus, Streptomycetaceae 

DQ462649, Streptomyces emeiensis, Streptomycetaceae 

AB249968, Streptomyces prasinopilosus, Streptomycetaceae 

FR692091, Streptomyces herbaceus, Streptomycetaceae 

FR692095, Streptomyces incanus, Streptomycetaceae 

FR692098, Streptomyces pratens, Streptomycetaceae 

DQ445792, Streptomyces poonensis, Streptomycetaceae 

DQ442499, Streptomyces fumigatiscleroticus, Streptomycetaceae 

AB184251, Streptomyces roseiscleroticus, Streptomycetaceae 

AB184604, Streptomyces ruber, Streptomycetaceae 

EF178683, Streptomyces spiralis, Streptomycetaceae 

AB231805, Streptomyces nogalater, Streptomycetaceae 

AB184390, Streptomyces prasinosporus, Streptomycetaceae 

DQ442529, Streptomyces naganishii, Streptomycetaceae 

AY999807, Streptomyces griseoviridis, Streptomycetaceae 

GU225938, Streptomyces zinciresistens, Streptomycetaceae 

AB249981, Streptomyces brasiliensis, Streptomycetaceae 

AB184188, Streptomyces aurantiogriseus, Streptomycetaceae 

AB018095, Streptomyces thermodiastaticus, Streptomycetaceae 

AB184237, Streptomyces rochei, Streptomycetaceae 

AY999929, Streptomyces vinaceusdrappus, Streptomycetaceae 

AY999922, Streptomyces plicatus, Streptomycetaceae 

EF178679, Streptomyces mutabilis, Streptomycetaceae 

DQ442501, Streptomyces geysiriensis, Streptomycetaceae 

EF178696, Streptomyces minutiscleroticus, Streptomycetaceae 

AY999851, Streptomyces ghanaensis, Streptomycetaceae 

AB184402, Streptomyces anandii, Streptomycetaceae 

AB184137, Streptomyces griseomycini, Streptomycetaceae 

AB184140, Streptomyces griseostramineus, Streptomycetaceae 

AJ781333, Streptomyces graminearus, Streptomycetaceae 

AB184665, Streptomyces glaucus, Streptomycetaceae 

AF333113, Streptomyces thermospinosisporus, Streptomycetaceae 

DQ442556, Streptomyces viridosporus, Streptomycetaceae 

AB184706, Streptomyces asterosporus, Streptomycetaceae 

AB184710, Streptomyces aureorectus, Streptomycetaceae 

DQ442554, Streptomyces virens, Streptomycetaceae 

AB184329, Streptomyces calvus, Streptomycetaceae 

EF178674, Streptomyces azureus, Streptomycetaceae 

AB184657, Streptomyces djakartensis, Streptomycetaceae 

DQ442541, Streptomyces pseudogriseolus, Streptomycetaceae 

X80824, Streptomyces caelestis, Streptomycetaceae 

DQ442516, Streptomyces lavendulocolor, Streptomycetaceae 

AY999854, Streptomyces viridiviolaceus, Streptomycetaceae 

AB184273, Streptomyces fumanus, Streptomycetaceae 

AB184574, Streptomyces carpinensis, Streptomycetaceae 

AY999844, Streptomyces fimbriatus, Streptomycetaceae

AB184660, Streptomyces gancidicus, Streptomycetaceae 

AY999810, Streptomyces rubiginosus, Streptomycetaceae 

DQ442495, Streptomyces cellulosae, Streptomycetaceae 

AB184577, Streptomyces capillispiralis, Streptomycetaceae 

AB184670, Streptomyces levis, Streptomycetaceae 

AB184847, Streptomyces afghaniensis, Streptomycetaceae 

AY208912, Streptomyces africanus, Streptomycetaceae 

AB184690, Streptomyces tuirus, Streptomycetaceae 

AB184255, Streptomyces albidoflavus, Streptomycetaceae 

DQ442497, Streptomyces daghestanicus, Streptomycetaceae 

AB184868, Streptomyces hydrogenans, Streptomycetaceae 

AJ399491, Streptomyces griseochromogenes, Streptomycetaceae 

AY999737, Streptomyces violascens, Streptomycetaceae 

AJ399472, Streptomyces resistomycificus, Streptomycetaceae 

AY079156, Streptomyces koyangensis, Streptomycetaceae 

FN429653, Streptomyces tacrolimicus, Streptomycetaceae 

AJ399485, Streptomyces arenae, Streptomycetaceae 

AB184316, Streptomyces violarus, Streptomycetaceae 

AB184143, Streptomyces hawaiiensis, Streptomycetaceae 

AB184152, Streptomyces massasporeus, Streptomycetaceae 

AB184379, Streptomyces luteogriseus, Streptomycetaceae 

AB184851, Streptomyces janthinus, Streptomycetaceae 

AB184315, Streptomyces violaceus, Streptomycetaceae 

AJ781327, Streptomyces albosporeus subsp. albosporeus, Streptomycetaceae 

AJ399484, Streptomyces roseoviolaceus, Streptomycetaceae 

AB184842, Streptomyces flavoviridis, Streptomycetaceae 

AB184161, Streptomyces pilosus, Streptomycetaceae 

DQ026672, Streptomyces atrovirens, Streptomycetaceae 

AF361786, Streptomyces niveiscabiei, Streptomycetaceae 

HM748598, Streptomyces gramineus, Streptomycetaceae 

AB184507, Streptomyces cinerochromogenes, Streptomycetaceae 

AB184648, Streptomyces cinereospinus, Streptomycetaceae 

DQ026668, Streptomyces coeruleofuscus, Streptomycetaceae 

AB249966, Streptomyces mexicanus, Streptomycetaceae 

AJ007402, Streptomyces thermocoprophilus, Streptomycetaceae 

Z68094, Streptomyces thermovulgaris, Streptomycetaceae 

AB249980, Streptomyces thermogriseus, Streptomycetaceae 

AB249909, Streptomyces thermoalcalitolerans, Streptomycetaceae 

Z68095, Streptomyces thermoviolaceus subsp. apingens, Streptomycetaceae 

AB184194, Streptomyces chromofuscus, Streptomycetaceae 

AB184421, Streptomyces bluensis, Streptomycetaceae 

U94489, Streptomyces thermocarboxydovorans, Streptomycetaceae 

Z68096, Streptomyces thermoviolaceus subsp. thermoviolaceus, Streptomycetaceae 

FM998652, Streptomyces hyderabadensis, Streptomycetaceae 

AB184673, Streptomyces lomondensis, Streptomycetaceae 

AB184651, Streptomyces coeruleoprunus, Streptomycetaceae 

AJ007403, Streptomyces somaliensis, Streptomycetaceae 

DQ026630, Streptomyces fradiae, Streptomycetaceae 

AB249917, Streptomyces glomeratus, Streptomycetaceae 

AY750056, Streptomyces bangladeshensis, Streptomycetaceae 

AY999821, Streptomyces rameus, Streptomycetaceae 

AB184419, Streptomyces griseosporeus, Streptomycetaceae 

AB184553, Streptomyces indiaensis, Streptomycetaceae 

AJ399486, Streptomyces purpurascens, Streptomycetaceae 

AB184877, Streptomyces iakyrus, Streptomycetaceae 

AY999720, Streptomyces coerulescens, Streptomycetaceae 

AB184849, Streptomyces bellus, Streptomycetaceae 

AB184424, Streptomyces lusitanus, Streptomycetaceae 

U94490, Streptomyces thermocarboxydus, Streptomycetaceae 

AF452714, Streptomyces speibonae, Streptomycetaceae 

AB184440, Streptomyces longispororuber, Streptomycetaceae 

AY999852, Streptomyces viridodiastaticus, Streptomycetaceae 

AY999719, Streptomyces coeruleorubidus, Streptomycetaceae 

AB249954, Streptomyces malachitospinus, Streptomycetaceae 

AB184326, Streptomyces parvulus, Streptomycetaceae 

AB184578, Streptomyces spinoverrucosus, Streptomycetaceae 

AB184743, Streptomyces olivaceus, Streptomycetaceae 

AB184398, Streptomyces pactum, Streptomycetaceae 

AB184631, Streptomyces anthocyanicus, Streptomycetaceae 

AB184687, Streptomyces tricolor, Streptomycetaceae 

AF503496, Streptomyces coelescens, Streptomycetaceae 

AF503491, Streptomyces humiferus, Streptomycetaceae 

AF503497, Streptomyces violaceolatus, Streptomycetaceae 

AF503492, Streptomyces violaceoruber, Streptomycetaceae 

AB184650, Streptomyces coelicoflavus, Streptomycetaceae 

AY999917, Streptomyces fragilis, Streptomycetaceae 

AB184681, Streptomyces rubrogriseus, Streptomycetaceae 

AJ781374, Streptomyces violaceorubidus, Streptomycetaceae 

D63873, Streptomyces tendae, Streptomycetaceae 

DQ026631, Streptomyces diastaticus subsp. ardesiacus, Streptomycetaceae 

DQ345779, Streptomyces tritolerans, Streptomycetaceae 

AY295791, Streptomyces chattanoogensis, Streptomycetaceae 

AJ781353, Streptomyces lienomycini, Streptomycetaceae 

AY177662, Streptomyces albogriseolus, Streptomycetaceae 

AJ965470, Streptomyces marokkonensis, Streptomycetaceae 

FM202482, Streptomyces thinghirensis, Streptomycetaceae 

AY999846, Streptomyces achromogenes subsp. rubradiris, Streptomycetaceae 

AY999808, Streptomyces althioticus, Streptomycetaceae 

AB184221, Streptomyces matensis, Streptomycetaceae 

AB184139, Streptomyces griseorubens, Streptomycetaceae 

AB184704, Streptomyces labedae, Streptomycetaceae 

DQ442551, Streptomyces variabilis, Streptomycetaceae 

AJ781328, Streptomyces erythrogriseus, Streptomycetaceae 

AJ781321, Streptomyces griseoincarnatus, Streptomycetaceae 

AB184712, Streptomyces heliomycini, Streptomycetaceae 

AY999757, Streptomyces albaduncus, Streptomycetaceae 

AB184275, Streptomyces griseoloalbus, Streptomycetaceae 

AB184282, Streptomyces malachitofuscus, Streptomycetaceae 

AJ781322, Streptomyces griseoflavus, Streptomycetaceae 

AB184742, Streptomyces gougerotii, Streptomycetaceae 

AB184170, Streptomyces rutgersensis, Streptomycetaceae 

AB184785, Streptomyces diastaticus subsp. diastaticus, Streptomycetaceae 

AB184277, Streptomyces intermedius, Streptomycetaceae 

AY999774, Streptomyces aureoverticillatus, Streptomycetaceae 

EU812170, Streptomyces silaceus, Streptomycetaceae 

AB184359, Streptomyces flavofungini, Streptomycetaceae 

AB184787, Streptomyces fulvissimus, Streptomycetaceae 

AB184393, Streptomyces spectabilis, Streptomycetaceae 

EF178699, Streptomyces alboflavus, Streptomycetaceae 

AJ781371, Streptomyces variegatus, Streptomycetaceae 

AF184081, Streptomyces scopiformis, Streptomycetaceae 

AB184676, Streptomyces griseoaurantiacus, Streptomycetaceae 

AY314783, Streptomyces jietaisiensis, Streptomycetaceae 

AB184123, Streptomyces collinus, Streptomycetaceae

AB184628, Streptomyces paradoxus, Streptomycetaceae 

AY999867, Streptomyces violaceochromogenes, Streptomycetaceae 

AB184182, Streptomyces ambofaciens, Streptomycetaceae 

D63870, Streptomyces eurythermus, Streptomycetaceae 

AF114033, Streptomyces nodosus, Streptomycetaceae 

DQ442555, Streptomyces viridochromogenes, Streptomycetaceae 

AB184843, Streptomyces glaucescens, Streptomycetaceae 

AY699792, Streptomyces pharetrae, Streptomycetaceae 

AB184764, Streptomyces flaveolus, Streptomycetaceae 

EF178678, Streptomyces misionensis, Streptomycetaceae 

AJ391814, Streptomyces phaeoluteichromatogenes, Streptomycetaceae 

AB184206, Streptomyces griseofuscus, Streptomycetaceae 

AB184155, Streptomyces murinus, Streptomycetaceae 

AB249939, Streptomyces costaricanus, Streptomycetaceae 

AJ391813, Streptomyces phaeogriseichromatogenes, Streptomycetaceae 

AJ399465, Streptomyces echinatus, Streptomycetaceae 

AB184845, Streptomyces lanatus, Streptomycetaceae 

AY999785, Streptomyces durhamensis, Streptomycetaceae 

AB184198, Streptomyces filipinensis, Streptomycetaceae 

AF361785, Streptomyces puniciscabiei, Streptomycetaceae 

DQ026652, Streptomyces yokosukanensis, Streptomycetaceae 

AY999742, Streptomyces cellostaticus, Streptomycetaceae 

X79852, Streptomyces galbus, Streptomycetaceae 

AB184580, Streptomyces longwoodensis, Streptomycetaceae 

AB184696, Streptomyces bungoensis, Streptomycetaceae 

AB045877, Streptomyces capoamus, Streptomycetaceae 

DQ026649, Streptomyces regensis, Streptomycetaceae 

AB184267, Streptomyces corchorusii, Streptomycetaceae 

AB184288, Streptomyces olivaceoviridis, Streptomycetaceae 

AB184396, Streptomyces canarius, Streptomycetaceae 

DQ442522, Streptomyces lucensis, Streptomycetaceae 

DQ445796, Streptomyces niveoruber, Streptomycetaceae 

AB184109, Streptomyces achromogenes subsp. achromogenes, Streptomycetaceae 

AJ781339, Streptomyces griseorubiginosus, Streptomycetaceae 

DQ026666, Streptomyces phaeopurpureus, Streptomycetaceae 

DQ026659, Streptomyces prunicolor, Streptomycetaceae 

BA000030, Streptomyces avermitilis , Streptomycetaceae 

EU812169, Streptomyces atriruber, Streptomycetaceae 

AB184412, Streptomyces mirabilis, Streptomycetaceae 

AY094370, Streptomyces olivochromogenes, Streptomycetaceae 

AB184072, Streptomyces cinereus, Streptomycetaceae 

DQ026643, Streptomyces flaveus, Streptomycetaceae 

DQ442552, Streptomyces vastus, Streptomycetaceae 

EF157833, Streptomyces indicus, Streptomycetaceae 

AY999861, Streptomyces aureocirculatus, Streptomycetaceae 

AB184357, Streptomyces novaecaesareae, Streptomycetaceae 

AB184328, Streptomyces bobili, Streptomycetaceae 

AB045878, Streptomyces galilaeus, Streptomycetaceae 

AJ391815, Streptomyces phaeoluteigriseus, Streptomycetaceae 

EF178691, Streptomyces flavovariabilis, Streptomycetaceae 

AB184839, Streptomyces chartreusis, Streptomycetaceae 

FJ613126, Streptomyces osmaniensis, Streptomycetaceae 

EU526954, Streptomyces plumbiresistens, Streptomycetaceae 

AY845349, Streptomyces alboniger, Streptomycetaceae 

AY999751, Streptomyces griseoluteus, Streptomycetaceae 

AB184165, Streptomyces recifensis, Streptomycetaceae 

AB249970, Streptomyces seoulensis, Streptomycetaceae 

AB184233, Streptomyces pseudovenezuelae, Streptomycetaceae 

AY999775, Streptomyces canus, Streptomycetaceae 

AB184208, Streptomyces ciscaucasicus, Streptomycetaceae 

GQ329712, Streptomyces caeruleatus, Streptomycetaceae 

AB184279, Streptomyces lincolnensis, Streptomycetaceae 

FJ465151, Streptomyces shaanxiensis, Streptomycetaceae 

DQ067287, Streptomyces durmitorensis, Streptomycetaceae 

DQ026660, Streptomyces rectiviolaceus, Streptomycetaceae 

AY094368, Streptomyces aureus, Streptomycetaceae 

DQ442511, Streptomyces kanamyceticus, Streptomycetaceae 

AY999824, Streptomyces ederensis, Streptomycetaceae 

AB184305, Streptomyces umbrinus, Streptomycetaceae 

AB184738, Streptomyces phaeochromogenes, Streptomycetaceae 

AB045879, Streptomyces tauricus, Streptomycetaceae 

AJ781383, Streptomyces aurantiacus, Streptomycetaceae 

AB249983, Streptomyces glomeroaurantiacus, Streptomycetaceae 

AB184262, Streptomyces bottropensis, Streptomycetaceae 

AJ007429, Streptomyces stelliscabiei, Streptomycetaceae 

DQ026644, Streptomyces cacaoi subsp. asoensis, Streptomycetaceae 

DQ442508, Streptomyces humidus, Streptomycetaceae 

EF178682, Streptomyces rishiriensis, Streptomycetaceae 

AJ007428, Streptomyces reticuliscabiei, Streptomycetaceae 

AB026221, Streptomyces turgidiscabies, Streptomycetaceae 

AB184560, Streptomyces hygroscopicus subsp. ossamyceticus, Streptomycetaceae 

AJ781367, Streptomyces torulosus, Streptomycetaceae 

AB184857, Streptomyces ipomoeae, Streptomycetaceae 

EU170127, Streptomyces decoyicus, Streptomycetaceae 

D63869, Streptomyces neyagawaensis, Streptomycetaceae 

D63867, Streptomyces diastatochromogenes, Streptomycetaceae 

AY207598, Streptomyces europaeiscabiei, Streptomycetaceae 

D63862, Streptomyces scabiei, Streptomycetaceae 

EF219459, Streptomyces deccanensis, Streptomycetaceae 

AY999758, Streptomyces cinereoruber subsp. fructofermentans, Streptomycetaceae 

AB184360, Streptomyces phaeofaciens, Streptomycetaceae 

DQ442542, Streptomyces puniceus, Streptomycetaceae 

AF346475, Streptomyces cyaneus, Streptomycetaceae 

D63865, Streptomyces acidiscabies, Streptomycetaceae 

AB498741, Streptomyces spongiae, Streptomycetaceae 

AB184209, Streptomyces griseoruber, Streptomycetaceae 

AY999776, Streptomyces antibioticus, Streptomycetaceae 

AB184442, Streptomyces alanosinicus, Streptomycetaceae 

AB184266, Streptomyces cinnabarinus, Streptomycetaceae 

DQ442513, Streptomyces kunmingensis, Streptomycetaceae 

AB184841, Streptomyces curacoi, Streptomycetaceae 

AB184270, Streptomyces flavidovirens, Streptomycetaceae 

AJ399475, Streptomyces longisporus, Streptomycetaceae 

AB500703, Streptomyces coacervatus, Streptomycetaceae 

AJ781342, Streptomyces laurentii, Streptomycetaceae 

AB184302, Streptomyces termitum, Streptomycetaceae 

AB184327, Streptomyces roseofulvus, Streptomycetaceae 

AB184168, Streptomyces roseolus, Streptomycetaceae 

AB184130, Streptomyces filamentosus, Streptomycetaceae 

AB184389, Streptomyces showdoensis, Streptomycetaceae 

AJ781372, Streptomyces viridobrunneus, Streptomycetaceae 

AB184239, Streptomyces roseoviridis, Streptomycetaceae 

DQ317411, Streptomyces gulbargensis, Streptomycetaceae

AB249953, Streptomyces albidochromogenes, Streptomycetaceae 

AB249930, Streptomyces enissocaesilis, Streptomycetaceae 

AY999787, Streptomyces chryseus, Streptomycetaceae 

AB184367, Streptomyces helvaticus, Streptomycetaceae 

EU196762, Streptomyces hypolithicus, Streptomycetaceae 

AB184638, Streptomyces albosporeus subsp. labilomyceticus, Streptomycetaceae 

AB184286, Streptomyces nashvillensis, Streptomycetaceae 

AY999771, Streptomyces cinereoruber subsp. cinereoruber, Streptomycetaceae 

DQ442506, Streptomyces hirsutus, Streptomycetaceae 

AB184314, Streptomyces violaceorectus, Streptomycetaceae 

X79851, Streptomyces bikiniensis, Streptomycetaceae 

DQ311081, Streptomyces vietnamensis, Streptomycetaceae 

AB184149, Streptomyces litmocidini, Streptomycetaceae 

EF178684, Streptomyces yerevanensis, Streptomycetaceae 

EF178697, Streptomyces omiyaensis, Streptomycetaceae 

DQ442557, Streptomyces wedmorensis, Streptomycetaceae 

EF178685, Streptomyces zaomyceticus, Streptomycetaceae 

AB184324, Streptomyces exfoliatus, Streptomycetaceae 

DQ445794, Streptomyces narbonensis, Streptomycetaceae 

AJ781326, Streptomyces lateritius, Streptomycetaceae 

AB045890, Streptomyces venezuelae, Streptomycetaceae 

AJ781355, Streptomyces nojiriensis, Streptomycetaceae 

AB184394, Streptomyces vinaceus, Streptomycetaceae 

AJ781370, Streptomyces spororaveus, Streptomycetaceae 

DQ442560, Streptomyces xanthophaeus, Streptomycetaceae 

AY999794, Streptomyces cirratus, Streptomycetaceae 

AB184395, Streptomyces avidinii, Streptomycetaceae 

X80825, Streptomyces subrutilus, Streptomycetaceae 

AY999841, Streptomyces lavendulae subsp. grasserius, Streptomycetaceae 

DQ442544, Streptomyces sporoverrucosus, Streptomycetaceae 

EF178693, Streptomyces goshikiensis, Streptomycetaceae 

DQ026646, Streptomyces colombiensis, Streptomycetaceae 

D85116, Streptomyces lavendulae subsp. lavendulae, Streptomycetaceae 

AB184707, Streptomyces cinnamonensis, Streptomycetaceae 

AB184175, Streptomyces virginiae, Streptomycetaceae 

AJ781330, Streptomyces globosus, Streptomycetaceae 

DQ442548, Streptomyces toxytricini, Streptomycetaceae 

AY999915, Streptomyces flavotricini, Streptomycetaceae 

AB184292, Streptomyces polychromogenes, Streptomycetaceae 

DQ026656, Streptomyces racemochromogenes, Streptomycetaceae 

AB184409, Streptomyces katrae, Streptomycetaceae 

AY999718, Streptomyces clavuligerus, Streptomycetaceae 

AB184325, Streptomyces kurssanovii, Streptomycetaceae 

AB184349, Streptomyces xantholiticus, Streptomycetaceae 

AB045887, Streptomyces peucetius, Streptomycetaceae 

FJ261968, Streptomyces sanyensis, Streptomycetaceae 

AY999744, Streptomyces cremeus, Streptomycetaceae 

AB184814, Streptomyces spiroverticillatus, Streptomycetaceae 

AB249945, Streptomyces sanglieri, Streptomycetaceae 

AB006159, Streptomyces yanii, Streptomycetaceae 

DQ026638, Streptomyces atratus, Streptomycetaceae 

DQ026636, Streptomyces gelaticus, Streptomycetaceae 

AB184806, Streptomyces pulveraceus, Streptomycetaceae 

FR692106, Streptomyces laculatispora, Streptomycetaceae 

FR692104, Streptomyces brevispora, Streptomycetaceae 

AF385681, Streptomyces beijiangensis, Streptomycetaceae 

AB249957, Streptomyces drozdowiczii, Streptomycetaceae 

AB249958, Streptomyces albovinaceus, Streptomycetaceae 

EF178686, Streptomyces globisporus, Streptomycetaceae 

AB184240, Streptomyces rubiginosohelvolus, Streptomycetaceae 

AY999856, Streptomyces tanashiensis, Streptomycetaceae 

DQ442540, Streptomyces pluricolorescens, Streptomycetaceae 

AJ494864, Streptomyces flavogriseus, Streptomycetaceae 

DQ026635, Streptomyces flavovirens, Streptomycetaceae 

EF178680, Streptomyces nitrosporeus, Streptomycetaceae 

AB184768, Streptomyces griseolus, Streptomycetaceae 

EF178695, Streptomyces halstedii, Streptomycetaceae 

AB184646, Streptomyces cinereorectus, Streptomycetaceae 

AB184711, Streptomyces fulvorobeus, Streptomycetaceae 

DQ445795, Streptomyces microflavus, Streptomycetaceae 

AY207604, Streptomyces griseus, Streptomycetaceae 

AB184860, Streptomyces cyaneofuscatus, Streptomycetaceae 

DQ026637, Streptomyces anulatus, Streptomycetaceae 

AB184120, Streptomyces chrysomallus subsp. chrysomallus, Streptomycetaceae 

AY999784, Streptomyces fimicarius, Streptomycetaceae 

AY999894, Streptomyces griseoplanus, Streptomycetaceae 

AY999783, Streptomyces badius, Streptomycetaceae 

AB184759, Streptomyces sindenensis, Streptomycetaceae 

DQ442537, Streptomyces parvus, Streptomycetaceae 

AJ781320, Streptomyces atroolivaceus, Streptomycetaceae 

DQ026670, Streptomyces clavifer, Streptomycetaceae 

AB249951, Streptomyces mutomycini, Streptomycetaceae 

AY999788, Streptomyces finlayi, Streptomycetaceae 

DQ026663, Streptomyces candidus, Streptomycetaceae 

AB184425, Streptomyces albolongus, Streptomycetaceae 

DQ445791, Streptomyces cavourensis, Streptomycetaceae 

AB184439, Streptomyces bacillaris, Streptomycetaceae 

AB184652, Streptomyces crystallinus, Streptomycetaceae 

AB184413, Streptomyces avellaneus, Streptomycetaceae 

AY999862, Streptomyces psammoticus, Streptomycetaceae 

AY207608, Streptomyces aureofaciens, Streptomycetaceae 

AY189976, Kitasatospora putterlickiae, Streptomycetaceae 

AY260167, Kitasatospora sampliensis, Streptomycetaceae 

AB184645, Streptomyces chrysomallus subsp. fumigatus, Streptomycetaceae 

AJ781324, Streptomyces purpureus, Streptomycetaceae 

AY999858, Streptomyces xanthocidicus, Streptomycetaceae 

AY999886, Streptomyces aburaviensis, Streptomycetaceae 

AB278569, Kitasatospora kazusensis, Streptomycetaceae 

U93324, Kitasatospora mediocidica, Streptomycetaceae 

AY442265, Kitasatospora gansuensis, Streptomycetaceae 

DQ026645, Kitasatospora atroaurantiaca, Streptomycetaceae 

AJ781364, Streptomyces purpeofuscus, Streptomycetaceae 

AB184801, Streptomyces herbaricolor, Streptomycetaceae 

AB184214, Streptomyces indigoferus, Streptomycetaceae 

U93312, Kitasatospora azatica, Streptomycetaceae 

AY442263, Kitasatospora nipponensis, Streptomycetaceae 

U93322, Kitasatospora kifunensis, Streptomycetaceae 

AB022875, Kitasatospora cineracea, Streptomycetaceae 

AB249960, Kitasatospora niigatensis, Streptomycetaceae 

U93332, Kitasatospora setae, type sp., Streptomycetaceae 

U93316, Kitasatospora cochleata, Streptomycetaceae 

U93328, Kitasatospora paracochleata, Streptomycetaceae 

AY999887, Kitasatospora cystarginea, Streptomycetaceae 

U93320, Kitasatospora griseola, Streptomycetaceae

AF050493, Kitasatospora cheerisanensis, Streptomycetaceae 

AB022869, Kitasatospora phosalacinea, Streptomycetaceae 

AY442267, Kitasatospora arboriphila, Streptomycetaceae 

AY613990, Kitasatospora viridis, Streptomycetaceae 

AB278568, Kitasatospora saccharophila, Streptomycetaceae 

AY442266, Kitasatospora terrestris, Streptomycetaceae 

AY442268, Kitasatospora paranensis, Streptomycetaceae 

DQ904546, Streptacidiphilus anmyonensis, Streptomycetaceae 

AB249948, Streptacidiphilus jiangxiensis, Streptomycetaceae 

DQ994689, Streptacidiphilus melanogenes, Streptomycetaceae 

DQ904547, Streptacidiphilus rugosus, Streptomycetaceae 

AB249949, Streptacidiphilus neutrinimicus, Streptomycetaceae 

AF074415, Streptacidiphilus albus, type sp., Streptomycetaceae 

AF074412, Streptacidiphilus carbonis, Streptomycetaceae 

EF657884, Streptomyces scopuliridis, Streptomycetaceae 

AB184579, Streptomyces sannanensis, Streptomycetaceae 

AB184153, Streptomyces michiganensis, Streptomycetaceae 

DQ442559, Streptomyces xanthochromogenes, Streptomycetaceae 

AB184532, Streptomyces mauvecolor, Streptomycetaceae 

DQ141528, Streptomyces polyantibioticus, Streptomycetaceae 

AB184222, Streptomyces melanogenes, Streptomycetaceae 

AB184287, Streptomyces noboritoensis, Streptomycetaceae 

AY999781, Streptomyces amakusaensis, Streptomycetaceae 

AB184445, Streptomyces inusitatus, Streptomycetaceae 

DQ442523, Streptomyces luridus, Streptomycetaceae 

AB184167, Streptomyces roseolilacinus, Streptomycetaceae 

AB184666, Streptomyces gobitricini, Streptomycetaceae 

AJ781336, Streptomyces lavendofoliae, Streptomycetaceae 

DQ442558, Streptomyces werraensis, Streptomycetaceae 

AY999790, Streptomyces eurocidicus, Streptomycetaceae 

EF178671, Streptomyces netropsis, Streptomycetaceae 

AB184720, Streptomyces stramineus, Streptomycetaceae 

AB184636, Streptomyces olivoverticillatus, Streptomycetaceae 

AB184866, Streptomyces orinoci, Streptomycetaceae 

AJ781349, Streptomyces morookaense, Streptomycetaceae 

GQ184344, Streptomyces lacticiproducens, Streptomycetaceae 

DQ442515, Streptomyces lavenduligriseus, Streptomycetaceae 

AB184850, Streptomyces cinnamoneus, Streptomycetaceae 

AB184100, Streptomyces pseudoechinosporeus, Streptomycetaceae 

AB184819, Streptomyces lilacinus, Streptomycetaceae 

DQ442525, Streptomyces luteosporeus, Streptomycetaceae 

AB184864, Streptomyces ardus, Streptomycetaceae 

AY999802, Streptomyces blastmyceticus, Streptomycetaceae 

AB184789, Streptomyces hiroshimensis, Streptomycetaceae 

EF178675, Streptomyces caeruleus, Streptomycetaceae 

X99943, Streptomyces griseocarneus, Streptomycetaceae 

DQ442509, Streptomyces angustmyceticus, Streptomycetaceae 

AY999834, Streptomyces abikoensis, Streptomycetaceae 

DQ026653, Streptomyces varsoviensis, Streptomycetaceae 

AB249969, Streptomyces luteireticuli, Streptomycetaceae 

AB184753, Streptomyces thioluteus, Streptomycetaceae 

X79323, Streptomyces mashuensis, Streptomycetaceae 

DQ442528, Streptomyces mobaraensis, Streptomycetaceae 

AB184094, Streptomyces ochraceiscleroticus, Streptomycetaceae 

AJ621604, Streptomyces purpurogeneiscleroticus, Streptomycetaceae 

AJ621605, Streptomyces violens, Streptomycetaceae 

AJ621607, Streptomyces niger, Streptomycetaceae 

AJ621606, Streptomyces olivaceiscleroticus, Streptomycetaceae 

DQ445790, Streptomyces monomycini, Streptomycetaceae 

AB184640, Streptomyces caniferus, Streptomycetaceae 

AY999883, Streptomyces hygroscopicus subsp. decoyicus, Streptomycetaceae 

AJ781351, Streptomyces libani subsp. rufus, Streptomycetaceae 

AB184479, Streptomyces hygroscopicus subsp. glebosus, Streptomycetaceae 

AB045882, Streptomyces platensis, Streptomycetaceae 

Y15507, Streptomyces lydicus, Streptomycetaceae 

AB184414, Streptomyces libani subsp. libani, Streptomycetaceae 

AJ621612, Streptomyces tubercidicus, Streptomycetaceae 

DQ026662, Streptomyces ramulosus, Streptomycetaceae 

AJ621608, Streptomyces sclerotialus, Streptomycetaceae 

AB045883, Streptomyces rimosus subsp. rimosus, Streptomycetaceae 

AB045880, Streptomyces albofaciens, Streptomycetaceae 

AJ621609, Streptomyces chrestomyceticus, Streptomycetaceae 

AJ621610, Streptomyces rimosus subsp. paromomycinus, Streptomycetaceae 

AJ621613, Streptomyces catenulae, Streptomycetaceae 

AB217605, Streptomyces misakiensis, Streptomycetaceae 

DQ094838, Streptomyces lunalinharesii, Streptomycetaceae 

AJ391816, Streptomyces auratus, Streptomycetaceae 

FR692111, Streptomyces staurosporininus, Streptomycetaceae 

DQ442530, Streptomyces nigrescens, Streptomycetaceae 

DQ026654, Streptomyces sioyaensis, Streptomycetaceae 

AY999753, Streptomyces albospinus, Streptomycetaceae 

AB024440, Streptomyces albulus, Streptomycetaceae 

AB184678, Streptomyces noursei, Streptomycetaceae 

AF346818, Streptomyces yunnanensis, Streptomycetaceae 

AB184476, Streptomyces celluloflavus, Streptomycetaceae 

AB024441, Streptomyces kasugaensis, Streptomycetaceae 

FN421338, Streptomyces youssoufiensis, Streptomycetaceae 

DQ442546, Streptomyces sulphureus, Streptomycetaceae 

AB184090, Streptomyces cuspidosporus, Streptomycetaceae 

AB184301, Streptomyces sparsogenes, Streptomycetaceae 

EU170123, Streptomyces aldersoniae, Streptomycetaceae 

EU170126, Streptomyces milbemycinicus, Streptomycetaceae 

EU170124, Streptomyces wellingtoniae, Streptomycetaceae 

EU170121, Streptomyces ascomycinicus, Streptomycetaceae 

AB249974, Streptomyces sulfonofaciens, Streptomycetaceae 

EF408733, Streptomyces rapamycinicus, Streptomycetaceae 

AB249918, Streptomyces malaysiensis, Streptomycetaceae 

EU077190, Streptomyces samsunensis, Streptomycetaceae 

FJ472862, Streptomyces iranensis, Streptomycetaceae 

AB184428, Streptomyces hygroscopicus subsp. hygroscopicus, Streptomycetaceae 

AB249933, Streptomyces sporocinereus, Streptomycetaceae 

AY999911, Streptomyces endus, Streptomycetaceae 

DQ334782, Streptomyces demainii, Streptomycetaceae 

AJ391812, Streptomyces albiflaviniger, Streptomycetaceae 

AB184420, Streptomyces violaceusniger, Streptomycetaceae 

AB249942, Streptomyces yogyakartensis, Streptomycetaceae 

AJ391818, Streptomyces griseiniger, Streptomycetaceae 

AJ391833, Streptomyces javensis, Streptomycetaceae 

AJ391831, Streptomyces cangkringensis, Streptomycetaceae 

DQ334783, Streptomyces indonesiensis, Streptomycetaceae 

AB249947, Streptomyces asiaticus, Streptomycetaceae 

AB249941, Streptomyces rhizosphaericus, Streptomycetaceae 

DQ334781, Streptomyces geldanamycininus, Streptomycetaceae 

AB249962, Streptomyces yatensis, Streptomycetaceae

AJ271887, Streptomyces melanosporofaciens, Streptomycetaceae 

AB184185, Streptomyces antimycoticus, Streptomycetaceae 

AB249934, Streptomyces sporoclivatus, Streptomycetaceae 

AY508511, Streptomyces castelarensis, Streptomycetaceae 

EF408735, Streptomyces mordarskii, Streptomycetaceae 

EF408736, Streptomyces himastatinicus, Streptomycetaceae 

AB184624, Streptomyces aculeolatus, Streptomycetaceae 

EF121313, Streptomyces synnematoformans, Streptomycetaceae 

AB184501, Streptomyces albus subsp. pathocidicus, Streptomycetaceae 

AY277529, Streptomyces hebeiensis, Streptomycetaceae 

AM934703, Streptomyces specialis, Streptomycetaceae 

EU925562, Streptomyces sedi, Streptomycetaceae 

EU399234, Streptomyces avicenniae, Streptomycetaceae 

AM398645, Streptomyces hainanensis, Streptomycetaceae 

EU200683, Streptomyces mayteni, Streptomycetaceae 

DQ442494, Streptomyces carpaticus, Streptomycetaceae 

AY822606, Streptomyces cheonanensis, Streptomycetaceae 

EF012099, Streptomyces xiamenensis, Streptomycetaceae 

AY236339, Streptomyces sodiiphilus, Streptomycetaceae 

AB473557, Streptomyces rubrus, Streptomycetaceae 

AB473554, Streptomyces marinus, Streptomycetaceae 

EU589334, Streptomyces nanshensis, Streptomycetaceae 

AB473556, Streptomyces haliclonae, Streptomycetaceae 

AB473555, Streptomyces tateyamensis, Streptomycetaceae 

FR692107, Streptomyces cocklensis, Streptomycetaceae 

AB184771, Streptomyces almquistii, Streptomycetaceae 

AB184663, Streptomyces gibsonii, Streptomycetaceae 

AB184295, Streptomyces rangoonensis, Streptomycetaceae 

AJ621602, Streptomyces albus subsp. albus, type sp., Streptomycetaceae 

AB184272, Streptomyces flocculus, Streptomycetaceae 

HQ660227, Streptomyces qinglanensis, Streptomycetaceae 

AB184115, Streptomyces cacaoi subsp. cacaoi, Streptomycetaceae 

AB018092, Streptomyces armeniacus, Streptomycetaceae 

EU200685, Streptomyces artemisiae, Streptomycetaceae 

FR693804, Streptomyces pharmamarensis, Streptomycetaceae 

AB245388, Streptomyces panacagri, Streptomycetaceae 

AY999901, Streptomyces albiaxialis, Streptomycetaceae 

AY262826, Streptomyces ferralitis, Streptomycetaceae 

EF577247, Streptomyces xinghaiensis, Streptomycetaceae 

AY876941, Streptomyces rubidus, Streptomycetaceae 

AF101415, Streptomyces yeochonensis, Streptomycetaceae 

EU683612, Streptomyces axinellae, Streptomycetaceae 

DQ460470, Streptomyces alni, Streptomycetaceae 

AY876943, Streptomyces paucisporeus, Streptomycetaceae 

AY876940, Streptomyces yanglinensis, Streptomycetaceae 

AB249964, Streptomyces glauciniger, Streptomycetaceae 

AY876942, Streptomyces guanduensis, Streptomycetaceae 

AB441718, Streptomyces baliensis, Streptomycetaceae 

AJ849545, Streptomyces sparsus, Streptomycetaceae 

Z68099, Streptomyces macrosporus, Streptomycetaceae 

AB184617, Streptomyces megasporus, Streptomycetaceae 

AB184664, Streptomyces glaucosporus, Streptomycetaceae 

GU356598, Streptomyces fenghuangensis, Streptomycetaceae 

GQ871748, Streptomyces nanhaiensis, Streptomycetaceae 

DQ912930, Streptomyces radiopugnans, Streptomycetaceae 

Z68097, Streptomyces thermolineatus, Streptomycetaceae 

AB184589, Streptomyces vitaminophilus, Streptomycetaceae 

DQ208700, Streptacidiphilus oryzae, Streptomycetaceae 

AB030585, Streptomyces scabrisporus, Streptomycetaceae 

AB522686, Streptomyces aomiensis, Streptomycetaceae 

FM998003, Motilibacter peucedani, type sp., Unclassified suborder Frankineae 

Catenulisporaceae (4) 

AJ865857, Catenulispora acidiphila, type sp., Catenulisporaceae 

AB180773, Catenulispora rubra, Catenulisporaceae 

AB327248, Catenulispora subtropica, Catenulisporaceae 

AB327250, Catenulispora yoronensis, Catenulisporaceae 

Actinospicaceae (2) 

AJ865861, Actinospica acidiphila, Actinospicaceae 

AJ865863, Actinospica robiniae, type sp., Actinospicaceae 

Mycobacteriaceae (151) 

X52934, Mycobacterium avium subsp. paratuberculosis, Mycobacteriaceae 

EF521891, Mycobacterium avium subsp. silvaticum, Mycobacteriaceae 

AJ536037, Mycobacterium avium subsp. avium, Mycobacteriaceae 

EU834055, Mycobacterium vulneris, Mycobacteriaceae 

EF591053, Mycobacterium bouchedurhonense, Mycobacteriaceae 

AM062764, Mycobacterium colombiense, Mycobacteriaceae 

FJ042897, Mycobacterium mantenii, Mycobacteriaceae 

EF054881, Mycobacterium arosiense, Mycobacteriaceae 

AJ536036, Mycobacterium intracellulare, Mycobacteriaceae 

AJ548480, Mycobacterium chimaera, Mycobacteriaceae 

EU266632, Mycobacterium marseillense, Mycobacteriaceae 

GQ153270, Mycobacterium paraffinicum, Mycobacteriaceae 

AF480604, Mycobacterium scrofulaceum, Mycobacteriaceae 

DQ536403, Mycobacterium seoulense, Mycobacteriaceae 

DQ536404, Mycobacterium paraseoulense, Mycobacteriaceae 

X52930, Mycobacterium malmoense, Mycobacteriaceae 

AY368456, Mycobacterium nebraskense, Mycobacteriaceae 

U84502, Mycobacterium bohemicum, Mycobacteriaceae 

AJ131120, Mycobacterium caprae, Mycobacteriaceae 

X58890, Mycobacterium tuberculosis, type sp., Mycobacteriaceae 

AF480605, Mycobacterium africanum, Mycobacteriaceae 

AF480584, Mycobacterium microti, Mycobacteriaceae 

AF502574, Mycobacterium pinnipedii, Mycobacteriaceae 

AF456240, Mycobacterium marinum, Mycobacteriaceae 

AB548725, Mycobacterium ulcerans, Mycobacteriaceae 

AY570988, Mycobacterium pseudoshottsii, Mycobacteriaceae 

AY005147, Mycobacterium shottsii, Mycobacteriaceae 

AB268503, Mycobacterium shinjukuense, Mycobacteriaceae 

AF406783, Mycobacterium lacus, Mycobacteriaceae 

AF480602, Mycobacterium gastri, Mycobacteriaceae 

AJ536035, Mycobacterium kansasii, Mycobacteriaceae 

X67847, Mycobacterium intermedium, Mycobacteriaceae 

AJ012756, Mycobacterium botniense, Mycobacteriaceae 

AJ536033, Mycobacterium xenopi, Mycobacteriaceae 

AF174290, Mycobacterium heckeshornense, Mycobacteriaceae 

EU239955, Mycobacterium noviomagense, Mycobacteriaceae 

AJ005005, Mycobacterium shimoidei, Mycobacteriaceae 

EU274642, Mycobacterium riyadhense, Mycobacteriaceae 

X52926, Mycobacterium szulgai, Mycobacteriaceae

X88922, Mycobacterium conspicuum, Mycobacteriaceae 

AJ616230, Mycobacterium florentinum, Mycobacteriaceae 

AM884331, Mycobacterium stomatepiae, Mycobacteriaceae 

AF330038, Mycobacterium montefiorense, Mycobacteriaceae 

X60070, Mycobacterium genavense, Mycobacteriaceae 

U57632, Mycobacterium triplex, Mycobacteriaceae 

AF466821, Mycobacterium parmense, Mycobacteriaceae 

AJ000684, Mycobacterium heidelbergense, Mycobacteriaceae 

AF480583, Mycobacterium lentiflavum, Mycobacteriaceae 

X52931, Mycobacterium simiae, Mycobacteriaceae 

AY353699, Mycobacterium sherrisii, Mycobacteriaceae 

HM022196, Mycobacterium europaeum, Mycobacteriaceae 

AY337273, Mycobacterium parascrofulaceum, Mycobacteriaceae 

AF133902, Mycobacterium kubicae, Mycobacteriaceae 

AJ308603, Mycobacterium palustre, Mycobacteriaceae 

HM037998, Mycobacterium interjectum, Mycobacteriaceae 

AY208856, Mycobacterium saskatchewanense, Mycobacteriaceae 

X52923, Mycobacterium gordonae, Mycobacteriaceae 

AF480595, Mycobacterium asiaticum, Mycobacteriaceae 

AF480574, Mycobacterium branderi, Mycobacteriaceae 

AB370111, Mycobacterium kyorinense, Mycobacteriaceae 

L08169, Mycobacterium celatum, Mycobacteriaceae 

X53896, Mycobacterium cookii, Mycobacteriaceae 

DQ157760, Mycobacterium arupense, Mycobacteriaceae 

X52928, Mycobacterium nonchromogenicum, Mycobacteriaceae 

X67096, Mycobacterium hiberniae, Mycobacteriaceae 

DQ536408, Mycobacterium senuense, Mycobacteriaceae 

AB239925, Mycobacterium kumamotonense, Mycobacteriaceae 

GU564404, Mycobacterium algericum, Mycobacteriaceae 

M29568, Mycobacterium terrae, Mycobacteriaceae 

X55603, Mycobacterium chitae, Mycobacteriaceae 

AF480600, Mycobacterium fallax, Mycobacteriaceae 

JF271826, Mycobacterium koreense, Mycobacteriaceae 

DQ058405, Mycobacterium triviale, Mycobacteriaceae 

AF480576, Mycobacterium brumae, Mycobacteriaceae 

AJ010747, Mycobacterium elephantis, Mycobacteriaceae 

AJ310467, Mycobacterium holsaticum, Mycobacteriaceae 

AJ429046, Mycobacterium pulveris, Mycobacteriaceae 

AJ634379, Mycobacterium confluentis, Mycobacteriaceae 

AB537170, Mycobacterium madagascariense, Mycobacteriaceae 

U49401, Mycobacterium hassiacum, Mycobacteriaceae 

X55602, Mycobacterium thermoresistibile, Mycobacteriaceae 

AJ429044, Mycobacterium moriokaense, Mycobacteriaceae 

AB537171, Mycobacterium murale, Mycobacteriaceae 

AF480590, Mycobacterium tokaiense, Mycobacteriaceae 

X55594, Mycobacterium gadium, Mycobacteriaceae 

Y12872, Mycobacterium goodii, Mycobacteriaceae 

AJ131761, Mycobacterium smegmatis, Mycobacteriaceae 

AJ699399, Mycobacterium mageritense, Mycobacteriaceae 

AY457083, Mycobacterium wolinskyi, Mycobacteriaceae 

U94745, Mycobacterium duvalii, Mycobacteriaceae 

AJ429045, Mycobacterium agri, Mycobacteriaceae 

X52932, Mycobacterium flavescens, Mycobacteriaceae 

DQ370011, Mycobacterium rutilum, Mycobacteriaceae 

X55595, Mycobacterium aurum, Mycobacteriaceae 

AJ431371, Mycobacterium pyrenivorans, Mycobacteriaceae 

X93182, Mycobacterium austroafricanum, Mycobacteriaceae 

X84977, Mycobacterium vanbaalenii, Mycobacteriaceae 

AF480591, Mycobacterium vaccae, Mycobacteriaceae 

AF264700, Mycobacterium doricum, Mycobacteriaceae 

AF107039, Mycobacterium monacense, Mycobacteriaceae 

GU997640, Mycobacterium litorale, Mycobacteriaceae 

U96747, Mycobacterium novocastrense, Mycobacteriaceae 

AF058299, Mycobacterium tusciae, Mycobacteriaceae 

AF480597, Mycobacterium chubuense, Mycobacteriaceae 

AY943385, Mycobacterium rufum, Mycobacteriaceae 

X79292, Mycobacterium chlorophenolicum, Mycobacteriaceae 

AF480589, Mycobacterium poriferae, Mycobacteriaceae 

AJ534886, Mycobacterium psychrotolerans, Mycobacteriaceae 

X55597, Mycobacterium obuense, Mycobacteriaceae 

X93183, Mycobacterium parafortuitum, Mycobacteriaceae 

X81996, Mycobacterium gilvum, Mycobacteriaceae 

X55598, Mycobacterium aichiense, Mycobacteriaceae 

AY943386, Mycobacterium aromaticivorans, Mycobacteriaceae 

AJ429047, Mycobacterium rhodesiae, Mycobacteriaceae 

AF023664, Mycobacterium alvei, Mycobacteriaceae 

AY457069, Mycobacterium peregrinum, Mycobacteriaceae 

AY457070, Mycobacterium septicum, Mycobacteriaceae 

AY457077, Mycobacterium porcinum, Mycobacteriaceae 

AY457068, Mycobacterium neworleansense, Mycobacteriaceae 

AY859684, Mycobacterium conceptionense, Mycobacteriaceae 

X55591, Mycobacterium komossense, Mycobacteriaceae 

AY012573, Mycobacterium boenickei, Mycobacteriaceae 

FR733720, Mycobacterium fortuitum subsp. acetamidolyticum, Mycobacteriaceae 

AY457066, Mycobacterium fortuitum subsp. fortuitum, Mycobacteriaceae 

EF138818, Mycobacterium setense, Mycobacteriaceae 

AY457067, Mycobacterium houstonense, Mycobacteriaceae 

AY457081, Mycobacterium senegalense, Mycobacteriaceae 

AY457084, Mycobacterium farcinogenes, Mycobacteriaceae 

AJ617741, Mycobacterium fluoranthenivorans, Mycobacteriaceae 

AJ276274, Mycobacterium frederiksbergense, Mycobacteriaceae 

AF480599, Mycobacterium diernhoferi, Mycobacteriaceae 

X93184, Mycobacterium hodleri, Mycobacteriaceae 

AY012577, Mycobacterium brisbanense, Mycobacteriaceae 

AY255478, Mycobacterium canariasense, Mycobacteriaceae 

AY449728, Mycobacterium cosmeticum, Mycobacteriaceae 

AF480593, Mycobacterium neoaurum, Mycobacteriaceae 

AY457071, Mycobacterium abscessus subsp. abscessus, Mycobacteriaceae 

AY859681, Mycobacterium abscessus subsp. bolletii, Mycobacteriaceae 

AY457072, Mycobacterium chelonae, Mycobacteriaceae 

DQ866768, Mycobacterium salmoniphilum, Mycobacteriaceae 

AY859683, Mycobacterium aubagnense, Mycobacteriaceae 

AJ746070, Mycobacterium llatzerense, Mycobacteriaceae 

AY457074, Mycobacterium mucogenicum, Mycobacteriaceae 

AY859682, Mycobacterium phocaicum, Mycobacteriaceae 

DQ534008, Mycobacterium crocinum, Mycobacteriaceae 

DQ370008, Mycobacterium pallens, Mycobacteriaceae 

EU605695, Mycobacterium insubricum, Mycobacteriaceae 

AF480603, Mycobacterium phlei, Mycobacteriaceae 

FR733719, Mycobacterium sphagni, Mycobacteriaceae 

EF564379, Amycolicicoccus subflavus , Mycobacteriaceae 

FJ179485, Hoyosella altamirensis, type sp., Unclassified suborder Corynebacterineae 

AB491283, Tomitella biformata, type sp., Unclassified suborder Corynebacterineae

Tsukamurellaceae (11) 

AY238513, Tsukamurella pseudospumae, Tsukamurellaceae 

AF150494, Tsukamurella sunchonensis, Tsukamurellaceae 

X92981, Tsukamurella pulmonis, Tsukamurellaceae 

AY714239, Tsukamurella spongiae, Tsukamurellaceae 

EU521689, Tsukamurella carboxydivorans, Tsukamurellaceae 

AY238514, Tsukamurella tyrosinosolvens, Tsukamurellaceae 

AF283283, Tsukamurella strandjordii, Tsukamurellaceae 

Z37150, Tsukamurella spumae, Tsukamurellaceae 

AF283281, Tsukamurella inchonensis, Tsukamurellaceae 

AF283280, Tsukamurella paurometabola, type sp., Tsukamurellaceae 

FJ917743, Tsukamurella soli, Tsukamurellaceae 

Corynebacteriaceae (88) 

X96497, Corynebacterium coyleae, Corynebacteriaceae 

FN295567, Corynebacterium pilbarense, Corynebacteriaceae 

AM397636, Corynebacterium ureicelerivorans, Corynebacteriaceae 

X82055, Corynebacterium afermentans subsp. lipophilum, Corynebacteriaceae 

X82054, Corynebacterium afermentans subsp. afermentans, Corynebacteriaceae 

Y11200, Corynebacterium mucifaciens, Corynebacteriaceae 

X86688, Corynebacterium glucuronolyticum, Corynebacteriaceae 

FJ185225, Corynebacterium pyruviciproducens, Corynebacteriaceae 

X84252, Corynebacterium cystitidis, Corynebacteriaceae 

AJ297402, Corynebacterium capitovis, Corynebacteriaceae 

X84241, Corynebacterium mycetoides, Corynebacteriaceae 

Y09045, Corynebacterium lipophiloflavum, Corynebacteriaceae 

X81873, Corynebacterium auris, Corynebacteriaceae 

EF217055, Corynebacterium timonense, Corynebacteriaceae 

Y09655, Corynebacterium sundsvallense, Corynebacteriaceae 

AF010474, Corynebacterium thomssenii, Corynebacteriaceae 

Y09044, Corynebacterium imitans, Corynebacteriaceae 

Y14651, Corynebacterium riegelii, Corynebacteriaceae 

AJ431634, Corynebacterium glaucum, Corynebacteriaceae 

AJ314919, Corynebacterium appendicis, Corynebacteriaceae 

AY677186, Corynebacterium tuscaniense, Corynebacteriaceae 

Y09569, Corynebacterium camporealensis, Corynebacteriaceae 

AJ555193, Corynebacterium ciconiae, Corynebacteriaceae 

EF217056, Corynebacterium massiliense, Corynebacteriaceae 

AJ438050, Corynebacterium tuberculostearicum, Corynebacteriaceae 

AJ439346, Corynebacterium accolens, Corynebacteriaceae 

AJ439345, Corynebacterium macginleyi, Corynebacteriaceae 

X84438, Corynebacterium propinquum, Corynebacteriaceae 

AJ439343, Corynebacterium pseudodiphtheriticum, Corynebacteriaceae 

Y15886, Corynebacterium confusum, Corynebacteriaceae 

X84678, Corynebacterium minutissimum, Corynebacteriaceae 

Y10999, Corynebacterium singulare, Corynebacteriaceae 

AJ309207, Corynebacterium aurimucosum, Corynebacteriaceae 

AJ012837, Corynebacterium simulans, Corynebacteriaceae 

X84442, Corynebacterium striatum, Corynebacteriaceae 

AF267152, Corynebacterium casei, Corynebacteriaceae 

FJ172667, Corynebacterium stationis, Corynebacteriaceae 

X84440, Corynebacterium ammoniagenes, Corynebacteriaceae 

Y10076, Corynebacterium phocae, Corynebacteriaceae 

X84441, Corynebacterium flavescens, Corynebacteriaceae 

AJ441057, Corynebacterium atypicum, Corynebacteriaceae 

X73976, Turicella otitidis, type sp., Corynebacteriaceae 

Z97069, Corynebacterium durum, Corynebacteriaceae 

Y09806, Corynebacterium mastitidis, Corynebacteriaceae 

AJ566641, Corynebacterium caspium, Corynebacteriaceae 

X81909, Corynebacterium renale, Corynebacteriaceae 

FJ157329, Corynebacterium freiburgense, Corynebacteriaceae 

GQ871934, Corynebacterium canis, Corynebacteriaceae 

AJ429234, Corynebacterium spheniscorum, Corynebacteriaceae 

EU998655, Corynebacterium doosanense, Corynebacteriaceae 

AY226509, Corynebacterium halotolerans, Corynebacteriaceae 

FJ423600, Corynebacterium maris, Corynebacteriaceae 

FM173119, Corynebacterium lubricantis, Corynebacteriaceae 

X81908, Corynebacterium pilosum, Corynebacteriaceae 

X81916, Corynebacterium pseudotuberculosis, Corynebacteriaceae 

X84256, Corynebacterium ulcerans, Corynebacteriaceae 

X81871, Corynebacterium kutscheri, Corynebacteriaceae 

X82065, Corynebacterium matruchotii, Corynebacteriaceae 

FJ374773, Corynebacterium mustelae, Corynebacteriaceae 

X84248, Corynebacterium diphtheriae, type sp., Corynebacteriaceae 

AJ401282, Corynebacterium felinum, Corynebacteriaceae 

AJ295841, Corynebacterium testudinoris, Corynebacteriaceae 

AJ496733, Corynebacterium aquilae, Corynebacteriaceae 

X83955, Corynebacterium argentoratense, Corynebacteriaceae 

DQ219354, Corynebacterium marinum, Corynebacteriaceae 

GQ421281, Corynebacterium humireducens, Corynebacteriaceae 

AF314192, Corynebacterium glutamicum, Corynebacteriaceae 

HQ612241, Corynebacterium deserti, Corynebacteriaceae 

X84251, Corynebacterium callunae, Corynebacteriaceae 

AB055963, Corynebacterium efficiens, Corynebacteriaceae 

AJ243819, Corynebacterium auriscanis, Corynebacteriaceae 

AB128981, Corynebacterium resistens, Corynebacteriaceae 

AJ504424, Corynebacterium suicordis, Corynebacteriaceae 

X84250, Corynebacterium jeikeium, Corynebacteriaceae 

X81913, Corynebacterium urealyticum, Corynebacteriaceae 

Y13024, Corynebacterium falsenii, Corynebacteriaceae 

X84444, Corynebacterium bovis, Corynebacteriaceae 

HM165487, Corynebacterium nuruki, Corynebacteriaceae 

AJ222815, Corynebacterium variabile, Corynebacteriaceae 

AB004730, Corynebacterium terpenotabidum, Corynebacteriaceae 

Y10077, Corynebacterium kroppenstedtii, Corynebacteriaceae 

AJ292762, Corynebacterium freneyi, Corynebacteriaceae 

X81914, Corynebacterium xerosis, Corynebacteriaceae 

AM946639, Corynebacterium hansenii, Corynebacteriaceae 

X82057, Corynebacterium amycolatum, Corynebacteriaceae 

AM930556, Corynebacterium sputi, Corynebacteriaceae 

AJ440964, Corynebacterium sphenisci, Corynebacteriaceae 

AM922112, Corynebacterium ulceribovis, Corynebacteriaceae 

Dietziaceae (13) 

EU375846, Dietzia cercidiphylli, Dietziaceae 

X92157, Dietzia natronolimnaea, Dietziaceae 

AB049630, Dietzia psychralcaliphila, Dietziaceae 

EU821598, Dietzia lutea, Dietziaceae 

X79290, Dietzia maris, type sp., Dietziaceae 

EU375845, Dietzia schimae, Dietziaceae 

AY972480, Dietzia kunjamensis, Dietziaceae 

GQ368824, Dietzia alimentaria, Dietziaceae 

FR821260, Dietzia aurantiaca, Dietziaceae

FM995533, Dietzia aerolata, Dietziaceae 

AJ920289, Dietzia cinnamea, Dietziaceae 

AY643401, Dietzia papillomatosis, Dietziaceae 

AB377289, Dietzia timorensis, Dietziaceae 

Nocardiaceae 2 (41) 

X80635, Gordonia amarae, Nocardiaceae 

AB162799, Gordonia effusa, Nocardiaceae 

X87340, Gordonia hydrophobica, Nocardiaceae 

AM406674, Gordonia malaquae, Nocardiaceae 

FN561544, Gordonia humi, Nocardiaceae 

FJ938167, Gordonia neofelifaecis, Nocardiaceae 

EU244645, Gordonia cholesterolivorans, Nocardiaceae 

AJ416151, Gordonia sihwensis, Nocardiaceae 

X93485, Gordonia hirsuta, Nocardiaceae 

DQ420167, Gordonia shandongensis, Nocardiaceae 

AF101418, Gordonia amicalis, Nocardiaceae 

AF101416, Gordonia desulfuricans, Nocardiaceae 

AF432348, Gordonia paraffinivorans, Nocardiaceae 

AY995557, Gordonia rubripertincta, Nocardiaceae 

Y18054, Gordonia alkanivorans, Nocardiaceae 

AJ312907, Gordonia westfalica, Nocardiaceae 

AF380930, Gordonia namibiensis, Nocardiaceae 

EF151959, Gordonia lacunae, Nocardiaceae 

X79286, Gordonia terrae, Nocardiaceae 

AB162800, Gordonia araii, Nocardiaceae 

AY650265, Gordonia defluvii, Nocardiaceae 

AM883151, Gordonia kroppenstedtii, Nocardiaceae 

AB122026, Gordonia otitidis, Nocardiaceae 

X80634, Gordonia sputi, Nocardiaceae 

X80633, Gordonia aichiensis, Nocardiaceae 

AB004729, Gordonia rhizosphera, Nocardiaceae 

X79287, Gordonia bronchialis, type sp., Nocardiaceae 

AF380834, Gordonia sinesedis, Nocardiaceae 

AY894336, Williamsia marianensis, Nocardiaceae 

Y17384, Williamsia muralis, type sp., Nocardiaceae 

HQ157192, Williamsia limnetica, Nocardiaceae 

DQ157929, Williamsia faeni, Nocardiaceae 

AB010909, Williamsia maris, Nocardiaceae 

FR691321, Williamsia phyllosphaerae, Nocardiaceae 

AJ920290, Williamsia deligens, Nocardiaceae 

AM283464, Williamsia serinedens, Nocardiaceae 

FJ572038, Gordonia hankookensis, Nocardiaceae 

AY995560, Gordonia soli, Nocardiaceae 

Y18310, Gordonia polyisoprenivorans, Nocardiaceae 

AY534742, Millisia brevis, type sp., Nocardiaceae 

Z35435, Skermania piniformis, type sp., Nocardiaceae 

AY233201, Rhodococcus gordoniae, Nocardiaceae 

AF173005, Rhodococcus pyridinivorans, Nocardiaceae 

GU367155, Rhodococcus artemisiae, Nocardiaceae 

X79288, Rhodococcus rhodochrous, type sp., Nocardiaceae 

U93340, Rhodococcus coprophilus, Nocardiaceae 

AF447391, Rhodococcus aetherivorans, Nocardiaceae 

X80625, Rhodococcus ruber, Nocardiaceae 

AF191343, Rhodococcus zopfii, Nocardiaceae 

AY533293, Rhodococcus phenolicus, Nocardiaceae 

AF430066, Rhodococcus corynebacterioides, Nocardiaceae 

AY726605, Rhodococcus kroppenstedtii, Nocardiaceae 

AY525785, Rhodococcus imtechensis, Nocardiaceae 

AF124342, Rhodococcus koreensis, Nocardiaceae 

Z37138, Rhodococcus wratislaviensis, Nocardiaceae 

X80630, Rhodococcus opacus, Nocardiaceae 

X92114, Rhodococcus percolatus, Nocardiaceae 

X80617, Rhodococcus marinonascens, Nocardiaceae 

AB046357, Rhodococcus jostii, Nocardiaceae 

AF416566, Rhodococcus maanshanensis, Nocardiaceae 

AB067734, Rhodococcus tukisamuensis, Nocardiaceae 

DQ090961, Rhodococcus qingshengii, Nocardiaceae 

DQ185597, Rhodococcus jialingiae, Nocardiaceae 

AB071951, Rhodococcus baikonurensis, Nocardiaceae 

FR733721, Nocardia coeliaca, Nocardiaceae 

X79289, Rhodococcus erythropolis, Nocardiaceae 

FR749915, Nocardia globerula, Nocardiaceae 

X80619, Rhodococcus globerulus, Nocardiaceae 

AB269261, Rhodococcus kyotonensis, Nocardiaceae 

AY602219, Rhodococcus yunnanensis, Nocardiaceae 

X79186, Rhodococcus fascians, Nocardiaceae 

X80621, Rhodococcus rhodnii, Nocardiaceae 

AJ854055, Rhodococcus triatomae, Nocardiaceae 

Nocardiaceae 1 (87) 

AB126880, Nocardia concava, Nocardiaceae 

AF430039, Nocardia seriolae, Nocardiaceae 

AF430067, Nocardia otitidiscaviarum, Nocardiaceae 

AF430044, Nocardia uniformis, Nocardiaceae 

AB092560, Nocardia inohanensis, Nocardiaceae 

AB092561, Nocardia yamanashiensis, Nocardiaceae 

DQ659910, Nocardia niigatensis, Nocardiaceae 

AM402972, Nocardia acidivorans, Nocardiaceae 

AF430049, Nocardia crassostreae, Nocardiaceae 

AF430028, Nocardia nova, Nocardiaceae 

FR733723, Nocardia mexicana, Nocardiaceae 

HQ157184, Nocardia thraciensis, Nocardiaceae 

GU367157, Nocardia artemisiae, Nocardiaceae 

AB201298, Nocardia terpenica, Nocardiaceae 

AF430042, Nocardia pseudobrasiliensis, Nocardiaceae 

AY639902, Nocardia jiangxiensis, Nocardiaceae 

AY639901, Nocardia miyunensis, Nocardiaceae 

AY779043, Nocardia lijiangensis, Nocardiaceae 

AY626158, Nocardia polyresistens, Nocardiaceae 

AY333115, Nocardia xishanensis, Nocardiaceae 

AB158277, Nocardia takedensis, Nocardiaceae 

AB187522, Nocardia exalbida, Nocardiaceae 

DQ235272, Nocardia gamkensis, Nocardiaceae 

EU006090, Nocardia altamirensis, Nocardiaceae 

AF430038, Nocardia brasiliensis, Nocardiaceae 

DQ925490, Nocardia iowensis, Nocardiaceae 

AJ556157, Nocardia tenerifensis, Nocardiaceae 

AF430052, Nocardia cummidelens, Nocardiaceae 

AF430051, Nocardia soli, Nocardiaceae 

AF277204, Nocardia fluminea, Nocardiaceae 

AF430050, Nocardia salmonicida, Nocardiaceae 

DQ235688, Nocardia coubleae, Nocardiaceae

AJ303008, Nocardia ignorata, Nocardiaceae 

AY964666, Nocardia jejuensis, Nocardiaceae 

DQ235687, Nocardia ninae, Nocardiaceae 

AY222321, Nocardia alba, Nocardiaceae 

AF430046, Nocardia pseudovaccinii, Nocardiaceae 

AB024312, Nocardia vinacea, Nocardiaceae 

AB162801, Nocardia anaemiae, Nocardiaceae 

AF459443, Nocardia caishijiensis, Nocardiaceae 

HQ157183, Nocardia goodfellowii, Nocardiaceae 

AY282603, Nocardia neocaledoniensis, Nocardiaceae 

AF430019, Nocardia asteroides, type sp., Nocardiaceae 

AF430035, Nocardia carnea, Nocardiaceae 

EF418604, Nocardia rhamnosiphila, Nocardiaceae 

AB121770, Nocardia sienata, Nocardiaceae 

AB192415, Nocardia testacea, Nocardiaceae 

AF219974, Nocardia pigrifrangens, Nocardiaceae 

Z46754, Nocardia flavorosea, Nocardiaceae 

DQ462650, Nocardia jinanensis, Nocardiaceae 

AM422449, Nocardia speluncae, Nocardiaceae 

FR729900, Nocardia grenadensis, Nocardiaceae 

FJ805428, Nocardia callitridis, Nocardiaceae 

HM153801, Nocardia endophytica, Nocardiaceae 

DQ282122, Nocardia harenae, Nocardiaceae 

AF430040, Nocardia brevicatena, Nocardiaceae 

AF430041, Nocardia paucivorans, Nocardiaceae 

AF430027, Nocardia cyriacigeorgica, Nocardiaceae 

AF218292, Nocardia abscessus, Nocardiaceae 

AB126876, Nocardia aobensis, Nocardiaceae 

AF060790, Nocardia cerradoensis, Nocardiaceae 

EU484388, Nocardia mikamii, Nocardiaceae 

AY441974, Nocardia kruczakiae, Nocardiaceae 

AF430055, Nocardia veterana, Nocardiaceae 

AF430054, Nocardia africana, Nocardiaceae 

AJ854057, Nocardia elegans, Nocardiaceae 

AB126873, Nocardia vermiculata, Nocardiaceae 

AF430045, Nocardia vaccinii, Nocardiaceae 

AB126874, Nocardia thailandica, Nocardiaceae 

AB108775, Nocardia shimofusensis, Nocardiaceae 

AB108778, Nocardia higoensis, Nocardiaceae 

AJ508748, Nocardia puris, Nocardiaceae 

AB108779, Nocardia araoensis, Nocardiaceae 

FJ765056, Nocardia niwae, Nocardiaceae 

AB108781, Nocardia arthritidis, Nocardiaceae 

AB275164, Nocardia amamiensis, Nocardiaceae 

AB108780, Nocardia pneumoniae, Nocardiaceae 

AB184754, Streptomyces gardneri, Streptomycetaceae 

AF154129, Nocardia beijingensis, Nocardiaceae 

AB092566, Nocardia asiatica, Nocardiaceae 

EU099360, Nocardia blacklockiae, Nocardiaceae 

AF430047, Nocardia transvalensis, Nocardiaceae 

EU099357, Nocardia wallacei, Nocardiaceae 

Z36936, Nocardia farcinica, Nocardiaceae 

DQ997045, Rhodococcus kunmingensis, Nocardiaceae 

AF490539, Rhodococcus equi, Nocardiaceae 

AB243007, Smaragdicoccus niigatensis, type sp., Nocardiaceae 

Segniliparaceae (2) 

AY608918, Segniliparus rotundus, type sp., Segniliparaceae 

AY608920, Segniliparus rugosus, Segniliparaceae 

Pseudonocardiaceae (218) 

AY957506, Amycolatopsis benzoatilytica, Pseudonocardiaceae 

AB248537, Amycolatopsis niigatensis, Pseudonocardiaceae 

AB248535, Amycolatopsis echigonensis, Pseudonocardiaceae 

AJ252832, Amycolatopsis albidoflavus, Pseudonocardiaceae 

DQ000196, Amycolatopsis halotolerans, Pseudonocardiaceae 

HQ021204, Amycolatopsis equina, Pseudonocardiaceae 

HQ021203, Amycolatopsis hippodromi, Pseudonocardiaceae 

HQ021202, Amycolatopsis circi, Pseudonocardiaceae 

AF222022, Amycolatopsis rubida, Pseudonocardiaceae 

AJ508240, Amycolatopsis vancoresmycina, Pseudonocardiaceae 

AJ293757, Amycolatopsis tolypomycina, Pseudonocardiaceae 

AY262825, Amycolatopsis plumensis, Pseudonocardiaceae 

AY183358, Amycolatopsis lexingtonensis, Pseudonocardiaceae 

AY183356, Amycolatopsis pretoriensis, Pseudonocardiaceae 

AY083603, Amycolatopsis rifamycinica, Pseudonocardiaceae 

AY183357, Amycolatopsis kentuckyensis, Pseudonocardiaceae 

AJ508239, Amycolatopsis balhimycina, Pseudonocardiaceae 

AJ293754, Amycolatopsis mediterranei, Pseudonocardiaceae 

AY129753, Amycolatopsis australiensis, Pseudonocardiaceae 

AJ293753, Amycolatopsis coloradensis, Pseudonocardiaceae 

AF051340, Amycolatopsis alba, Pseudonocardiaceae 

FJ581021, Amycolatopsis thailandensis, Pseudonocardiaceae 

AJ400711, Amycolatopsis orientalis, type sp., Pseudonocardiaceae 

AY129760, Amycolatopsis regifaucium, Pseudonocardiaceae 

AJ508238, Amycolatopsis keratiniphila subsp. nogabecina, Pseudonocardiaceae 

AJ278496, Amycolatopsis keratiniphila subsp. keratiniphila, Pseudonocardiaceae 

AJ508237, Amycolatopsis decaplanina, Pseudonocardiaceae 

AJ508236, Amycolatopsis japonica, Pseudonocardiaceae 

AJ293755, Amycolatopsis lurida, Pseudonocardiaceae 

AJ400709, Amycolatopsis azurea, Pseudonocardiaceae 

DQ076482, Amycolatopsis minnesotensis, Pseudonocardiaceae 

DQ486888, Amycolatopsis nigrescens, Pseudonocardiaceae 

GQ381310, Amycolatopsis samaneae, Pseudonocardiaceae 

DQ792500, Amycolatopsis saalfeldensis, Pseudonocardiaceae 

FJ529702, Amycolatopsis xylanica, Pseudonocardiaceae 

DQ000200, Amycolatopsis jejuensis, Pseudonocardiaceae 

AJ293756, Amycolatopsis sulphurea, Pseudonocardiaceae 

FM177516, Amycolatopsis ultiminotia, Pseudonocardiaceae 

EU329845, Amycolatopsis marina, Pseudonocardiaceae 

AF479268, Amycolatopsis palatopharyngis, Pseudonocardiaceae 

FJ606836, Amycolatopsis halophila, Pseudonocardiaceae 

HQ436534, Amycolatopsis salitolerans, Pseudonocardiaceae 

AF223354, Amycolatopsis sacchari, Pseudonocardiaceae 

AB588632, Micropolyspora internatus, Nocardiaceae 

Z38007, Saccharomonospora viridis, type sp., Pseudonocardiaceae 

Z38003, Saccharomonospora glauca, Pseudonocardiaceae 

Z38018, Saccharomonospora cyanea, Pseudonocardiaceae 

AJ306300, Saccharomonospora xinjiangensis, Pseudonocardiaceae 

Z38017, Saccharomonospora azurea, Pseudonocardiaceae 

DQ367416, Saccharomonospora saliphila, Pseudonocardiaceae 

FJ812357, Saccharomonospora marina, Pseudonocardiaceae 

AJ278497, Saccharomonospora halophila, Pseudonocardiaceae

AF540959, Saccharomonospora paurometabolica, Pseudonocardiaceae 

FJ444992, Prauserella salsuginis, Pseudonocardiaceae 

FJ444995, Prauserella sediminis, Pseudonocardiaceae 

FJ444993, Prauserella flava, Pseudonocardiaceae 

AF435077, Prauserella alba, Pseudonocardiaceae 

AF466190, Prauserella halophila, Pseudonocardiaceae 

FJ444994, Prauserella aidingensis, Pseudonocardiaceae 

AF051342, Prauserella rugosa, type sp., Pseudonocardiaceae 

FJ444996, Prauserella marina, Pseudonocardiaceae 

FM956091, Prauserella muralis, Pseudonocardiaceae 

AJ000285, Amycolatopsis eurytherma, Pseudonocardiaceae 

DQ886938, Amycolatopsis tucumanensis, Pseudonocardiaceae 

AJ249135, Amycolatopsis methanolica, Pseudonocardiaceae 

AF052390, Amycolatopsis thermoflava, Pseudonocardiaceae 

HQ668524, Amycolatopsis ruanii, Pseudonocardiaceae 

AY129774, Amycolatopsis thermophila, Pseudonocardiaceae 

AF466095, Amycolatopsis viridis, Pseudonocardiaceae 

AF466101, Amycolatopsis granulosa, Pseudonocardiaceae 

HQ668525, Amycolatopsis thermalba, Pseudonocardiaceae 

AB327253, Amycolatopsis helveola, Pseudonocardiaceae 

DQ160215, Amycolatopsis taiwanensis, Pseudonocardiaceae 

AB327254, Amycolatopsis pigmentata, Pseudonocardiaceae 

X79183, Thermocrispum agreste, Pseudonocardiaceae 

X79184, Thermocrispum municipale, type sp., Pseudonocardiaceae 

GQ366705, Haloechinothrix alba, type sp., Pseudonocardiaceae 

FJ526746, Yuhushiella deserti, type sp., Pseudonocardiaceae 

EU503139, Sciscionella marina, type sp., Pseudonocardiaceae 

EU267029, Saccharopolyspora hirsuta subsp. kobensis, Pseudonocardiaceae 

EF143926, Saccharopolyspora jiangxiensis, Pseudonocardiaceae 

EF693956, Saccharopolyspora antimicrobica, Pseudonocardiaceae 

DQ381814, Saccharopolyspora hirsuta subsp. hirsuta, type sp., Pseudonocardiaceae 

FN179275, Saccharopolyspora hordei, Pseudonocardiaceae 

EF104116, Saccharopolyspora shandongensis, Pseudonocardiaceae 

AF002818, Saccharopolyspora spinosa, Pseudonocardiaceae 

AF127526, Saccharopolyspora thermophila, Pseudonocardiaceae 

GQ381309, Saccharopolyspora phatthalungensis, Pseudonocardiaceae 

AM992060, Saccharopolyspora rosea, Pseudonocardiaceae 

AM420293, Saccharopolyspora erythraea, Pseudonocardiaceae 

Y09571, Saccharopolyspora spinosporotrichia, Pseudonocardiaceae 

AF002819, Saccharopolyspora taberi, Pseudonocardiaceae 

EU005371, Saccharopolyspora gloriosae, Pseudonocardiaceae 

X76962, Saccharopolyspora gregorii, Pseudonocardiaceae 

Actinopolysporaceae (5) 

GQ480940, Actinopolyspora alba, Actinopolysporaceae 

GU479394, Actinopolyspora xinjiangensis, Actinopolysporaceae 

GQ480939, Actinopolyspora erythraea, Actinopolysporaceae 

DQ883812, Actinopolyspora mortivallis, Actinopolysporaceae 

X54287, Actinopolyspora halophila, type sp., Actinopolysporaceae 

JN010255, Saccharopolyspora rectivirgula, Pseudonocardiaceae 

EF687715, Saccharopolyspora qijiaojingensis, Pseudonocardiaceae 

AF154128, Saccharopolyspora flava, Pseudonocardiaceae 

FJ214364, Saccharopolyspora tripterygii, Pseudonocardiaceae 

DQ923129, Saccharopolyspora halophila, Pseudonocardiaceae 

EF030715, Saccharopolyspora cebuensis, Pseudonocardiaceae 

AB511316, Actinophytocola corallina, Pseudonocardiaceae 

AB511315, Actinophytocola timorensis, Pseudonocardiaceae 

AB535095, Actinophytocola burenkhanensis, Pseudonocardiaceae 

EU420070, Actinophytocola oryzae, type sp., Pseudonocardiaceae 

EU274339, Actinophytocola xinjiangensis, Pseudonocardiaceae 

AB514520, Actinomycetospora cinnamomea, Pseudonocardiaceae 

AB514519, Actinomycetospora chlora, Pseudonocardiaceae 

AB514517, Actinomycetospora chibensis, Pseudonocardiaceae 

AB514518, Actinomycetospora straminea, Pseudonocardiaceae 

AB514514, Actinomycetospora succinea, Pseudonocardiaceae 

AB514515, Actinomycetospora lutea, Pseudonocardiaceae 

AM398646, Actinomycetospora chiangmaiensis, type sp., Pseudonocardiaceae 

AB514513, Actinomycetospora corticicola, Pseudonocardiaceae 

AB581530, Actinomycetospora rishiriensis, Pseudonocardiaceae 

AB581531, Actinomycetospora iriomotensis, Pseudonocardiaceae 

EU921261, Pseudonocardia acaciae, Pseudonocardiaceae 

Y08536, Pseudonocardia asaccharolytica, Pseudonocardiaceae 

AB514449, Pseudonocardia babensis, Pseudonocardiaceae 

GU227146, Pseudonocardia artemisiae, Pseudonocardiaceae 

EU722520, Pseudonocardia xinjiangensis, Pseudonocardiaceae 

AJ252828, Pseudonocardia petroleophila, Pseudonocardiaceae 

AJ252829, Pseudonocardia saturnea, Pseudonocardiaceae 

FR733722, Pseudonocardia alaniniphila, Pseudonocardiaceae 

AJ252822, Pseudonocardia yunnanensis, Pseudonocardiaceae 

FR749916, Pseudonocardia aurantiaca, Pseudonocardiaceae 

AB521672, Pseudonocardia khuvsgulensis, Pseudonocardiaceae 

EF588218, Pseudonocardia thermophila, type sp., Pseudonocardiaceae 

FJ805427, Pseudonocardia adelaidensis, Pseudonocardiaceae 

AF325725, Pseudonocardia zijingensis, Pseudonocardiaceae 

FJ817377, Pseudonocardia kunmingensis, Pseudonocardiaceae 

AF454510, Pseudonocardia chloroethenivorans, Pseudonocardiaceae 

AB521671, Pseudonocardia mongoliensis, Pseudonocardiaceae 

DQ887489, Pseudonocardia endophytica, Pseudonocardiaceae 

AJ252833, Pseudonocardia kongjuensis, Pseudonocardiaceae 

AY500143, Pseudonocardia ammonioxydans, Pseudonocardiaceae 

AJ252824, Pseudonocardia autotrophica, Pseudonocardiaceae 

AJ252825, Pseudonocardia compacta, Pseudonocardiaceae 

X55609, Pseudonocardia nitrificans, Pseudonocardiaceae 

AJ252823, Pseudonocardia alni, Pseudonocardiaceae 

EF114314, Pseudonocardia carboxydivorans, Pseudonocardiaceae 

AJ576010, Pseudonocardia antarctica, Pseudonocardiaceae 

GQ906587, Pseudonocardia tropica, Pseudonocardiaceae 

FM863703, Pseudonocardia parietis, Pseudonocardiaceae 

AB547126, Pseudonocardia spinosa, Pseudonocardiaceae 

AJ249206, Pseudonocardia spinosispora, Pseudonocardiaceae 

FJ805426, Pseudonocardia eucalypti, Pseudonocardiaceae 

DQ344632, Pseudonocardia ailaonensis, Pseudonocardiaceae 

DQ343154, Pseudonocardia oroxyli, Pseudonocardiaceae 

AJ252827, Pseudonocardia halophobica, Pseudonocardiaceae 

AJ556156, Pseudonocardia benzenivorans, Pseudonocardiaceae 

AY340622, Pseudonocardia dioxanivorans, Pseudonocardiaceae 

AJ249200, Pseudonocardia tetrahydrofuranoxydans, Pseudonocardiaceae 

AJ252826, Pseudonocardia hydrocarbonoxydans, Pseudonocardiaceae 

Y08537, Pseudonocardia sulfidoxydans, Pseudonocardiaceae 

FM998036, Labedaea rhizosphaerae, type sp., Pseudonocardiaceae 

AJ512463, Kibdelosporangium aridum subsp. largum, Pseudonocardiaceae 

AJ512464, Kibdelosporangium philippinense, Pseudonocardiaceae 

AJ311174, Kibdelosporangium aridum subsp. aridum, type sp., Pseudonocardiaceae 

JN005785, Actinokineospora soli, Pseudonocardiaceae

D85497, Streptoalloteichus hindustanus, type sp., Pseudonocardiaceae 

AB184722, Streptoalloteichus tenebrarius, Pseudonocardiaceae 

X76966, Saccharothrix mutabilis subsp. mutabilis, Pseudonocardiaceae 

X76965, Saccharothrix mutabilis subsp. capreolus, Pseudonocardiaceae 

GQ917213, Saccharothrix variisporea, Pseudonocardiaceae 

AF114807, Saccharothrix espanaensis, Pseudonocardiaceae 

AF114814, Saccharothrix texasensis, Pseudonocardiaceae 

AF114803, Saccharothrix australiensis, type sp., Pseudonocardiaceae 

AB284261, Saccharothrix violaceirubra, Pseudonocardiaceae 

AY054972, Saccharothrix algeriensis, Pseudonocardiaceae 

AF114805, Saccharothrix coeruleofusca, Pseudonocardiaceae 

AF114812, Saccharothrix syringae, Pseudonocardiaceae 

AY135693, Saccharothrix xinjiangensis, Pseudonocardiaceae 

AF114809, Saccharothrix longispora, Pseudonocardiaceae 

AF328679, Actinosynnema mirum, type sp., Pseudonocardiaceae 

AB303364, Actinosynnema pretiosum subsp. auranticum, Pseudonocardiaceae 

AF114800, Actinosynnema pretiosum subsp. pretiosum, Pseudonocardiaceae 

AF114804, Lechevalieria aerocolonigenes, type sp., Pseudonocardiaceae 

DQ898283, Lechevalieria xinjiangensis, Pseudonocardiaceae 

AJ512462, Allokutzneria albata, type sp., Pseudonocardiaceae 

AF114808, Lechevalieria flava, Pseudonocardiaceae 

AF328680, Lentzea albidocapillata, type sp., Pseudonocardiaceae 

AJ242633, Lentzea violacea, Pseudonocardiaceae 

AF183957, Lentzea flaviverrucosa, Pseudonocardiaceae 

AB020029, Lentzea waywayandensis, Pseudonocardiaceae 

AF174435, Lentzea californiensis, Pseudonocardiaceae 

AB006176, Lentzea albida, Pseudonocardiaceae 

DQ291145, Lentzea kentuckyensis, Pseudonocardiaceae 

AY114175, Lechevalieria fradiae, Pseudonocardiaceae 

EU551683, Lechevalieria roselyniae, Pseudonocardiaceae 

EU551684, Lechevalieria atacamensis, Pseudonocardiaceae 

AB447489, Actinokineospora cibodasensis, Pseudonocardiaceae 

EU438907, Alloactinosynnema album, type sp., Pseudonocardiaceae 

AF114797, Actinokineospora diospyrosa, Pseudonocardiaceae 

AB473945, Actinokineospora cianjurensis, Pseudonocardiaceae 

AB058396, Actinokineospora auranticolor, Pseudonocardiaceae 

AB447488, Actinokineospora baliensis, Pseudonocardiaceae 

AF114798, Actinokineospora globicatena, Pseudonocardiaceae 

AB058394, Actinokineospora terrae, Pseudonocardiaceae 

AB058395, Actinokineospora enzanensis, Pseudonocardiaceae 

AF114799, Actinokineospora inagensis, Pseudonocardiaceae 

AF114802, Actinokineospora riparia, type sp., Pseudonocardiaceae 

GQ200601, Actinokineospora fastidiosa, Pseudonocardiaceae 

AB020031, Umezawaea tangerina, type sp., Pseudonocardiaceae 

EF543522, Kutzneria albida, Pseudonocardiaceae 

AF114801, Kutzneria kofuensis, Pseudonocardiaceae 

U58530, Kutzneria viridogrisea, type sp., Pseudonocardiaceae 

AB006178, Actinoalloteichus cyanogriseus, type sp., Pseudonocardiaceae 

AY426714, Actinoalloteichus spitiensis, Pseudonocardiaceae 

DQ144222, Actinoalloteichus hymeniacidonis, Pseudonocardiaceae 

GQ926935, Actinoalloteichus nanshanensis, Pseudonocardiaceae 

DQ093349, Goodfellowiella coeruleoviolacea, type sp., Pseudonocardiaceae 

AF114806, Crossiella cryophila, type sp., Pseudonocardiaceae 

AF245017, Crossiella equi, Pseudonocardiaceae 

Micromonosporaceae (136) 

AB036996, Actinoplanes consettensis, Micromonosporaceae 

AB037004, Actinoplanes humidus, Micromonosporaceae 

FR733685, Actinoplanes friuliensis, Micromonosporaceae 

AB037000, Actinoplanes digitatis, Micromonosporaceae 

AJ277568, Actinoplanes durhamensis, Micromonosporaceae 

X93188, Actinoplanes regularis, Micromonosporaceae 

AJ277573, Actinoplanes palleronii, Micromonosporaceae 

AB047494, Actinoplanes octamycinicus, Micromonosporaceae 

AB047495, Actinoplanes ianthinogenes, Micromonosporaceae 

AJ277574, Actinoplanes utahensis, Micromonosporaceae 

U58526, Actinoplanes auranticolor, Micromonosporaceae 

EU531458, Actinoplanes sichuanensis, Micromonosporaceae 

AB037006, Actinoplanes lobatus, Micromonosporaceae 

AB036995, Actinoplanes campanulatus, Micromonosporaceae 

AB013495, Actinoplanes capillaceus, Micromonosporaceae 

AB036997, Actinoplanes cyaneus, Micromonosporaceae 

AJ865471, Actinoplanes liguriensis, Micromonosporaceae 

AB037005, Actinoplanes italicus, Micromonosporaceae 

AM400230, Actinoplanes couchii, Micromonosporaceae 

AB037010, Actinoplanes rectilineatus, Micromonosporaceae 

AB036999, Actinoplanes derwentensis, Micromonosporaceae 

EU531457, Actinoplanes xinjiangensis, Micromonosporaceae 

AJ277572, Actinoplanes missouriensis, Micromonosporaceae 

U58525, Actinoplanes philippinensis, type sp., Micromonosporaceae 

AB047513, Actinoplanes teichomyceticus, Micromonosporaceae 

X92594, Micromonospora chalcea, type sp., Micromonosporaceae 

AB196712, Micromonospora marina , Micromonosporaceae 

X92604, Micromonospora aurantiaca, Micromonosporaceae 

X92601, Micromonospora halophytica, Micromonosporaceae 

X92611, Micromonospora purpureochromogenes, Micromonosporaceae 

AB241455, Micromonospora coxensis, Micromonosporaceae 

GU459068, Micromonospora humi, Micromonosporaceae 

AB241454, Micromonospora chokoriensis, Micromonosporaceae 

AJ783996, Micromonospora lupini, Micromonosporaceae 

AJ626950, Micromonospora mirobrigensis, Micromonosporaceae 

AB193565, Micromonospora siamensis, Micromonosporaceae 

AY561829, Micromonospora rifamycinica, Micromonosporaceae 

AF152109, Micromonospora matsumotoense, Micromonosporaceae 

AJ783993, Micromonospora saelicesensis, Micromonosporaceae 

AB196716, Micromonospora krabiensis, Micromonosporaceae 

X92599, Micromonospora carbonacea, Micromonosporaceae 

AM232832, Planosporangium flavigriseum, type sp., Micromonosporaceae 

GU126491, Planosporangium mesophilum, Micromonosporaceae 

X93185, Actinoplanes brasiliensis, Micromonosporaceae 

HQ157185, Actinoplanes abujensis, Micromonosporaceae 

AJ277569, Actinoplanes ferrugineus, Micromonosporaceae 

AB468944, Actinoplanes tereljensis, Micromonosporaceae 

AB468943, Actinoplanes toevensis, Micromonosporaceae 

AB048219, Actinoplanes globisporus, Micromonosporaceae 

AJ277565, Actinoplanes deccanensis, Micromonosporaceae 

AB236956, Krasilnikovia cinnamomea, type sp., Micromonosporaceae 

AB302183, Pseudosporangium ferrugineum, type sp., Micromonosporaceae 

X93202, Couchioplanes caeruleus subsp. azureus, Micromonosporaceae 

D85479, Couchioplanes caeruleus subsp. caeruleus, type sp., Micromonosporaceae 

AB490769, Phytohabitans suffuscus, type sp., Micromonosporaceae 

AB112081, Asanoa iriomotensis, Micromonosporaceae 

AJ294715, Asanoa ishikariensis, Micromonosporaceae

AF152108, Asanoa ferruginea, type sp., Micromonosporaceae 

FJ155992, Asanoa hainanensis, Micromonosporaceae 

EU560726, Jishengella endophytica, type sp., Micromonosporaceae 

AB588634, Catenuloplanes castaneus, Micromonosporaceae 

X93201, Catenuloplanes japonicus, type sp., Micromonosporaceae 

AJ294716, Catenuloplanes atrovinosus, Micromonosporaceae 

AJ294717, Catenuloplanes indicus, Micromonosporaceae 

AB588635, Catenuloplanes niger, Micromonosporaceae 

AB024701, Catenuloplanes crispus, Micromonosporaceae 

FJ715941, Catenuloplanes nepalensis, Micromonosporaceae 

EF191199, Verrucosispora lutea, Micromonosporaceae 

EU870859, Verrucosispora sediminis, Micromonosporaceae 

Y15523, Verrucosispora gifhornensis, type sp., Micromonosporaceae 

AY528866, Verrucosispora maris, Micromonosporaceae 

AB200231, Catellatospora chokoriensis, Micromonosporaceae 

AF152107, Catellatospora methionotrophica, Micromonosporaceae 

AF152106, Catellatospora citrea, type sp., Micromonosporaceae 

AB200232, Catellatospora coxensis, Micromonosporaceae 

AF171700, Catelliglobosispora koreensis, Micromonosporaceae 

FN386736, Allocatelliglobosispora scoriae, type sp., Micromonosporaceae 

AB200233, Catellatospora bangladeshensis, Micromonosporaceae 

AF152110, Hamadaea tsunoensis, Micromonosporaceae 

AB089241, Longispora albida, type sp., Micromonosporaceae 

AB489859, Longispora fulva, Micromonosporaceae 

X92607, Micromonospora echinospora, Micromonosporaceae 

X92620, Micromonospora fulviviridis, Micromonosporaceae 

X92629, Micromonospora inyonensis, Micromonosporaceae 

X92624, Micromonospora sagamiensis, Micromonosporaceae 

X92610, Micromonospora inositola, Micromonosporaceae 

X92618, Micromonospora echinaurantiaca, Micromonosporaceae 

X92613, Micromonospora olivasterospora, Micromonosporaceae 

X92623, Micromonospora viridifaciens, Micromonosporaceae 

X92608, Micromonospora pallida, Micromonosporaceae 

X92609, Micromonospora nigra, Micromonosporaceae 

X92598, Micromonospora coerulea, Micromonosporaceae 

AJ784008, Micromonospora coriariae, Micromonosporaceae 

X92625, Micromonospora echinofusca, Micromonosporaceae 

X92603, Micromonospora peucetia, Micromonosporaceae 

X92617, Micromonospora citrea, Micromonosporaceae 

X92628, Micromonospora chersina, Micromonosporaceae 

AJ560635, Micromonospora endolithica, Micromonosporaceae 

AB159779, Micromonospora auratinigra, Micromonosporaceae 

X92631, Micromonospora rosaria, Micromonosporaceae 

EU196562, Micromonospora tulbaghiae, Micromonosporaceae 

FJ261956, Micromonospora rhizosphaerae, Micromonosporaceae 

AB196710, Micromonospora chaiyaphumensis, Micromonosporaceae 

GU002071, Micromonospora yangpuensis, Micromonosporaceae 

AB107231, Micromonospora eburnea, Micromonosporaceae 

AB193559, Micromonospora narathiwatensis, Micromonosporaceae 

AB275607, Micromonospora pattaloongensis, Micromonosporaceae 

AM944497, Micromonospora pisi, Micromonosporaceae 

AY040619, Salinispora arenicola, type sp., Micromonosporaceae 

AY040617, Salinispora tropica, Micromonosporaceae 

AB454379, Actinaurispora siamensis, type sp., Micromonosporaceae 

AB223089, Polymorphospora rubra, type sp., Micromonosporaceae 

FJ214343, Plantactinospora mayteni, type sp., Micromonosporaceae 

D63912, Spirilliplanes yamanashiensis, type sp., Micromonosporaceae 

X93192, Dactylosporangium fulvum, Micromonosporaceae 

X93194, Dactylosporangium roseum, Micromonosporaceae 

X92630, Dactylosporangium thailandense, Micromonosporaceae 

FM882231, Dactylosporangium darangshiense, Micromonosporaceae 

FJ973605, Dactylosporangium luridum, Micromonosporaceae 

FJ973604, Dactylosporangium luteum, Micromonosporaceae 

X93191, Dactylosporangium aurantiacum, type sp., Micromonosporaceae 

AB495209, Dactylosporangium maewongense, Micromonosporaceae 

X93193, Dactylosporangium matsuzakiense, Micromonosporaceae 

X93196, Dactylosporangium vinaceum, Micromonosporaceae 

FJ973607, Dactylosporangium salmoneum, Micromonosporaceae 

AB454508, Dactylosporangium tropicum, Micromonosporaceae 

AB236959, Luedemannella flava, Micromonosporaceae 

AB236957, Luedemannella helvata, type sp., Micromonosporaceae 

FM208262, Rugosimonospora africana, Micromonosporaceae 

FM208261, Rugosimonospora acidiphila, type sp., Micromonosporaceae 

X93189, Pilimelia anulata, Micromonosporaceae 

X93190, Pilimelia terevasa, type sp., Micromonosporaceae 

AB548688, Pilimelia columellifera subsp. columellifera, Micromonosporaceae 

AB006169, Virgisporangium aurantiacum, Micromonosporaceae 

AB006167, Virgisporangium ochraceum, type sp., Micromonosporaceae 

AB548616, Virgisporangium aliadipatigenens, Micromonosporaceae 

Glycomycetaceae (13) 

AY462041, Glycomyces lechevalierae, Glycomycetaceae 

AJ293748, Glycomyces rutgersensis, Glycomycetaceae 

AY462044, Glycomyces algeriensis, Glycomycetaceae 

EU200681, Glycomyces endophyticus, Glycomycetaceae 

D85483, Glycomyces harbinensis, type sp., Glycomycetaceae 

DQ460469, Glycomyces sambucus, Glycomycetaceae 

EU200682, Glycomyces scopariae, Glycomycetaceae 

EU814511, Glycomyces mayteni, Glycomycetaceae 

AY462042, Glycomyces arizonensis, Glycomycetaceae 

D85482, Glycomyces tenuis, Glycomycetaceae 

EU660053, Haloglycomyces albus, type sp., Glycomycetaceae 

AY650268, Stackebrandtia nassauensis, type sp., Glycomycetaceae 

DQ985165, Stackebrandtia albiflava, Glycomycetaceae 

GU367156, Phytomonospora endophytica, type sp., Micromonosporaceae 

AB107233, Actinocatenispora thailandica, type sp., Micromonosporaceae 

AB263096, Actinocatenispora sera, Micromonosporaceae 

AM980986, Actinocatenispora rupis, Micromonosporaceae 

Jiangellaceae (5) 

FN645214, Jiangella muralis, Jiangellaceae 

FJ157186, Jiangella alba, Jiangellaceae 

AM422451, Jiangella alkaliphila, Jiangellaceae 

AY631071, Jiangella gansuensis, type sp., Jiangellaceae 

FJ969846, Haloactinopolyspora alba, type sp., Jiangellaceae 

Thermomonosporaceae (71) 

AJ293701, Actinocorallia aurantiaca, Thermomonosporaceae 

U49007, Actinocorallia libanotica, Thermomonosporaceae 

D85473, Actinocorallia herbida, type sp., Thermomonosporaceae 

AB006177, Actinocorallia aurea, Thermomonosporaceae 

AJ293704, Actinocorallia glomerata, Thermomonosporaceae 

AJ293707, Actinocorallia longicatena, Thermomonosporaceae

AY966427, Actinocorallia cavernae, Thermomonosporaceae 

AF163123, Spirillospora rubra, Thermomonosporaceae 

DQ285420, Actinomadura rudentiformis, Thermomonosporaceae 

AJ420137, Actinomadura fulvescens, Thermomonosporaceae 

D85498, Spirillospora albida, type sp., Thermomonosporaceae 

AJ293702, Actinomadura fibrosa, Thermomonosporaceae 

EU637009, Actinomadura keratinilytica, Thermomonosporaceae 

EF116925, Actinomadura miaoliensis, Thermomonosporaceae 

EU637008, Actinomadura rubrobrunea, Thermomonosporaceae 

D86943, Actinomadura viridilutea, Thermomonosporaceae 

AF163118, Actinomadura oligospora, Thermomonosporaceae 

FM210337, Actinomadura rupiterrae, Thermomonosporaceae 

X97890, Actinomadura kijaniata, Thermomonosporaceae 

AJ420134, Actinomadura namibiensis, Thermomonosporaceae 

AJ293705, Actinomadura hibisca, Thermomonosporaceae 

AY035999, Actinomadura nitritigenes, Thermomonosporaceae 

AJ293703, Actinomadura formosensis, Thermomonosporaceae 

U49000, Actinomadura atramentaria, Thermomonosporaceae 

FJ157185, Actinomadura flavalba, Thermomonosporaceae 

AY568292, Actinomadura napierensis, Thermomonosporaceae 

AY273787, Actinomadura meyerae, Thermomonosporaceae 

HQ157187, Actinomadura geliboluensis, Thermomonosporaceae 

U49008, Actinomadura luteofluorescens, Thermomonosporaceae 

U49011, Actinomadura verrucosospora, Thermomonosporaceae 

U49010, Actinomadura rugatobispora, Thermomonosporaceae 

U49009, Actinomadura macra, Thermomonosporaceae 

U49002, Actinomadura coerulea, Thermomonosporaceae 

AJ293710, Actinomadura pelletieri, Thermomonosporaceae 

FN646663, Actinomadura meridiana, Thermomonosporaceae 

U49003, Actinomadura rifamycini, Thermomonosporaceae 

AB557596, Actinomadura apis, Thermomonosporaceae 

AF134067, Actinomadura cremea subsp. cremea, Thermomonosporaceae 

JF272484, Actinomadura sediminis, Thermomonosporaceae 

AB184612, Actinomadura glauciflava, Thermomonosporaceae 

AJ420139, Actinomadura citrea, Thermomonosporaceae 

AF277195, Actinomadura mexicana, Thermomonosporaceae 

X97889, Actinomadura madurae, type sp., Thermomonosporaceae 

AY035998, Actinomadura latina, Thermomonosporaceae 

AB331652, Actinomadura bangladeshensis, Thermomonosporaceae 

AB331730, Actinomadura chokoriensis, Thermomonosporaceae 

AF134070, Actinomadura vinacea, Thermomonosporaceae 

AJ420141, Actinomadura viridis, Thermomonosporaceae 

AF163122, Actinomadura yumaensis, Thermomonosporaceae 

AB264086, Actinomadura chibensis, Thermomonosporaceae 

AF154127, Actinomadura catellatispora, Thermomonosporaceae 

AJ293706, Actinomadura livida, Thermomonosporaceae 

DQ076484, Actinomadura hallensis, Thermomonosporaceae 

FM957483, Actinomadura sputi, Thermomonosporaceae 

AJ293713, Actinomadura umbrina, Thermomonosporaceae 

D86945, Thermomonospora curvata, type sp., Thermomonosporaceae 

AJ420135, Actinomadura echinospora, Thermomonosporaceae 

AB364579, Actinoallomurus coprocola, Thermomonosporaceae 

EU420071, Actinoallomurus oryzae, Thermomonosporaceae 

AB364586, Actinoallomurus iriomotensis, Thermomonosporaceae 

AB578855, Actinoallomurus radicium, Thermomonosporaceae 

EU429322, Actinoallomurus acaciae , Thermomonosporaceae 

AB364589, Actinoallomurus caesius, Thermomonosporaceae 

AB364583, Actinoallomurus amamiensis, Thermomonosporaceae 

AB364582, Actinoallomurus fulvus, Thermomonosporaceae 

AB364584, Actinoallomurus yoronensis, Thermomonosporaceae 

AB364585, Actinoallomurus luridus, Thermomonosporaceae 

AB364588, Actinoallomurus purpureus, Thermomonosporaceae 

AF163120, Actinoallomurus spadix, type sp., Thermomonosporaceae 

FM210339, Actinomadura scrupuli, Thermomonosporaceae 

DQ985164, Actinomadura alba, Thermomonosporaceae 

Nocardiopsaceae (50) 

AY028325, Nocardiopsis exhalans, Nocardiopsaceae 

AY336503, Nocardiopsis valliformis, Nocardiopsaceae 

AY336513, Nocardiopsis ganjiahuensis, Nocardiopsaceae 

AJ420769, Nocardiopsis metallicus, Nocardiopsaceae 

X97884, Nocardiopsis prasina, Nocardiopsaceae 

AY230848, Nocardiopsis alkaliphila, Nocardiopsaceae 

X97887, Nocardiopsis listeri, Nocardiopsaceae 

X97883, Nocardiopsis alba, Nocardiopsaceae 

AF105971, Nocardiopsis tropica, Nocardiopsaceae 

AY036001, Nocardiopsis umidischolae, Nocardiopsaceae 

AJ539401, Nocardiopsis aegyptia, Nocardiopsaceae 

X97886, Nocardiopsis dassonvillei subsp. dassonvillei, type sp., Nocardiopsaceae 

Y13593, Nocardiopsis synnemataformans, Nocardiopsaceae 

X97882, Nocardiopsis dassonvillei subsp. albirubida, Nocardiopsaceae 

AJ290448, Nocardiopsis halotolerans, Nocardiopsaceae 

EU410477, Nocardiopsis arvandica, Nocardiopsaceae 

EU410476, Nocardiopsis sinuspersici, Nocardiopsaceae 

EF597511, Nocardiopsis quinghaiensis, Nocardiopsaceae 

X97888, Nocardiopsis lucentensis, Nocardiopsaceae 

AF195412, Nocardiopsis kunsanensis, Nocardiopsaceae 

EU583726, Nocardiopsis litoralis, Nocardiopsaceae 

AF251709, Nocardiopsis xinjiangensis, Nocardiopsaceae 

AY373031, Nocardiopsis salina, Nocardiopsaceae 

AB491226, Nocardiopsis nikkonensis, Nocardiopsaceae 

GU997639, Nocardiopsis flavescens, Nocardiopsaceae 

AY619716, Nocardiopsis baichengensis, Nocardiopsaceae 

AJ421018, Nocardiopsis halophila, Nocardiopsaceae 

AY619715, Nocardiopsis chromatogenes, Nocardiopsaceae 

AY619714, Nocardiopsis rhodophaea, Nocardiopsaceae 

AY619713, Nocardiopsis rosea, Nocardiopsaceae 

AY619712, Nocardiopsis gilva, Nocardiopsaceae 

JN006759, Nocardiopsis coralliicola, Nocardiopsaceae 

FM253114, Nocardiopsis potens, Nocardiopsaceae 

AF360734, Nocardiopsis composta, Nocardiopsaceae 

AF105972, Nocardiopsis trehalosi, Nocardiopsaceae 

AF462347, Streptomonospora alba, Nocardiopsaceae 

EU442553, Streptomonospora flavalba, Nocardiopsaceae 

EU442551, Streptomonospora amylolytica, Nocardiopsaceae 

AF178988, Streptomonospora salina, type sp., Nocardiopsaceae 

EF095149, Nocardiopsis arabia, Nocardiopsaceae 

EF423989, Streptomonospora halophila, Nocardiopsaceae 

DQ923130, Haloactinospora alba, type sp., Nocardiopsaceae 

GU253338, Salinactinospora qingdaonensis, type sp., Nocardiopsaceae 

EU698029, Marinactinospora thermotolerans, type sp., Nocardiopsaceae 

FN393755, Murinocardiopsis flavida, type sp., Nocardiopsaceae 

GU112453, Spinactinospora alkalitolerans, type sp., Nocardiopsaceae 

AJ298058, Thermobifida cellulosilytica, Nocardiopsaceae

AF028245, Thermobifida fusca, Nocardiopsaceae 

AF002260, Thermobifida alba, type sp., Nocardiopsaceae 

EU250489, Thermobifida halotolerans, Nocardiopsaceae 

Streptosporangiaceae (83) 

AB039961, Nonomuraea roseoviolacea subsp. carminata, Streptosporangiaceae 

AB039959, Nonomuraea roseoviolacea subsp. roseoviolacea, Streptosporangiaceae 

GU002054, Nonomuraea maritima, Streptosporangiaceae 

FJ418910, Nonomuraea jiangxiensis, Streptosporangiaceae 

FJ157184, Nonomuraea antimicrobica, Streptosporangiaceae 

AF277200, Nonomuraea rubra, Streptosporangiaceae 

U48843, Nonomuraea angiospora, Streptosporangiaceae 

U48983, Nonomuraea spiralis, Streptosporangiaceae 

U48975, Nonomuraea helvata, Streptosporangiaceae 

U48845, Nonomuraea ferruginea, Streptosporangiaceae 

U48977, Nonomuraea polychroma, Streptosporangiaceae 

AB274967, Nonomuraea coxensis, Streptosporangiaceae 

U48844, Nonomuraea fastidiosa, Streptosporangiaceae 

AB274966, Nonomuraea bangladeshensis, Streptosporangiaceae 

FJ261959, Nonomuraea wenchangensis, Streptosporangiaceae 

AJ746362, Nonomuraea kuesteri, Streptosporangiaceae 

AB290014, Nonomuraea maheshkhaliensis, Streptosporangiaceae 

AB018787, Nonomuraea longicatena, Streptosporangiaceae 

GU367158, Nonomuraea endophytica, Streptosporangiaceae 

X97892, Nonomuraea salmonea, Streptosporangiaceae 

DQ285421, Nonomuraea candida, Streptosporangiaceae 

AF277201, Nonomuraea turkmeniaca, Streptosporangiaceae 

AB018046, Microbispora corallina, Streptosporangiaceae 

FJ199993, Microbispora siamensis, Streptosporangiaceae 

D86936, Microbispora rosea subsp. rosea, type sp., Streptosporangiaceae 

U48984, Microbispora rosea subsp. aerata, Streptosporangiaceae 

AF002266, Microbispora mesophila, Streptosporangiaceae 

AB370244, Planotetraspora thailandica, Streptosporangiaceae 

AB112082, Planotetraspora silvatica, Streptosporangiaceae 

D85496, Planotetraspora mira, type sp., Streptosporangiaceae 

FJ426333, Planotetraspora kaengkrachanensis, Streptosporangiaceae 

AB025318, Acrocarpospora macrocephala, Streptosporangiaceae 

AB006174, Acrocarpospora pleiomorpha, type sp., Streptosporangiaceae 

AB188150, Acrocarpospora corrugata, Streptosporangiaceae 

D85485, Herbidospora cretacea, type sp., Streptosporangiaceae 

FJ214356, Herbidospora osyris, Streptosporangiaceae 

AY749433, Herbidospora daliensis, Streptosporangiaceae 

DQ246623, Herbidospora yilanensis, Streptosporangiaceae 

FJ199995, Herbidospora sakaeratensis, Streptosporangiaceae 

U48973, Microtetraspora fusca, Streptosporangiaceae 

U48976, Microtetraspora niveoalba, Streptosporangiaceae 

X97891, Microtetraspora glauca, type sp., Streptosporangiaceae 

AB062383, Microtetraspora malaysiensis, Streptosporangiaceae 

D85491, Nonomuraea pusilla, type sp., Streptosporangiaceae 

X89953, Sphaerisporangium viridialbum, Streptosporangiaceae 

AB208714, Sphaerisporangium melleum, Streptosporangiaceae 

HM043727, Sphaerisporangium siamense, Streptosporangiaceae 

HM037365, Sphaerisporangium krabiense, Streptosporangiaceae 

EU499344, Sphaerisporangium album, Streptosporangiaceae 

EU499338, Sphaerisporangium flaviroseum, Streptosporangiaceae 

AB208718, Sphaerisporangium rubeum, Streptosporangiaceae 

X89939, Sphaerisporangium cinnabarinum, Streptosporangiaceae 

AB028653, Planomonospora parontospora subsp. antibiotica, Streptosporangiaceae 

AB062382, Planomonospora sphaerica, Streptosporangiaceae 

D85495, Planomonospora parontospora subsp. parontospora, type sp., Streptosporangiaceae 

AB062381, Planomonospora alba, Streptosporangiaceae 

D85494, Planobispora longispora, type sp., Streptosporangiaceae 

AB028654, Planobispora rosea, Streptosporangiaceae 

AB028655, Planomonospora venezuelensis, Streptosporangiaceae 

JF742631, Nonomuraea soli, Streptosporangiaceae 

AY039253, Thermopolyspora flexuosa, type sp., Streptosporangiaceae 

AF191735, Streptosporangium purpuratum, Streptosporangiaceae 

AF191733, Streptosporangium yunnanense, Streptosporangiaceae 

U48999, Streptosporangium vulgare, Streptosporangiaceae 

X89944, Streptosporangium longisporum, Streptosporangiaceae 

AB537172, Streptosporangium amethystogenes subsp. fukuiense, Streptosporangiaceae 

X89935, Streptosporangium amethystogenes subsp. amethystogenes, Streptosporangiaceae 

AB594818, Streptosporangium oxazolinicum, Streptosporangiaceae 

X89934, Streptosporangium album, Streptosporangiaceae 

X89947, Streptosporangium roseum, type sp., Streptosporangiaceae 

AY996844, Streptosporangium canum, Streptosporangiaceae 

AF191734, Streptosporangium subroseum, Streptosporangiaceae 

X89945, Streptosporangium nondiastaticum, Streptosporangiaceae 

X89946, Streptosporangium pseudovulgare, Streptosporangiaceae 

U48992, Streptosporangium fragile, Streptosporangiaceae 

X89938, Streptosporangium carneum, Streptosporangiaceae 

U48997, Streptosporangium violaceochromogenes, Streptosporangiaceae 

U48842, Nonomuraea africana, Streptosporangiaceae 

U48979, Nonomuraea recticatena, Streptosporangiaceae 

AJ278221, Nonomuraea roseola, Streptosporangiaceae 

AB006156, Nonomuraea dietziae, Streptosporangiaceae 

FN356742, Nonomuraea rosea, Streptosporangiaceae 

HM755723, Nonomuraea rhizophila, Streptosporangiaceae 

EU438912, Sinosporangium album, type sp., Unclassified Suborder Streptosporangineae 

AF116558, Thermomonospora chromogena, Thermomonosporaceae 

U58523, Thermobispora bispora, type sp., Pseudonocardiaceae 

EF601829, Actinopolymorpha rutila, Nocardioidaceae 

EU438909, Actinopolymorpha cephalotaxi, Nocardioidaceae 

AF237815, Actinopolymorpha singaporensis, type sp., Nocardioidaceae 

FJ805429, Actinopolymorpha pittospori, Nocardioidaceae 

EU706350, Actinopolymorpha alba, Nocardioidaceae 

AB535715, Thermasporomyces composti, type sp., Nocardioidaceae 

FJ805430, Flindersiella endophytica, type sp., Nocardioidaceae 

Nocardioidaceae (71) 

AB245396, Nocardioides ginsengisoli, Nocardioidaceae 

AF005009, Pimelobacter simplex, type sp., Nocardioidaceae 

AF005024, Nocardioides nitrophenolicus, Nocardioidaceae 

AB087721, Nocardioides aromaticivorans, Nocardioidaceae 

DQ218275, Nocardioides kongjuensis, Nocardioidaceae 

FJ423551, Nocardioides caeni, Nocardioidaceae 

FM997998, Nocardioides ultimimeridianus, Nocardioidaceae 

FM998000, Nocardioides maradonensis, Nocardioidaceae 

EF623863, Nocardioides humi, Nocardioidaceae 

EF466107, Nocardioides tritolerans, Nocardioidaceae 

EF466113, Nocardioides agariphilus, Nocardioidaceae 

EF466123, Nocardioides islandensis, Nocardioidaceae 

AF004988, Nocardioides albus, type sp., Nocardioidaceae

AF005007, Nocardioides luteus, Nocardioidaceae 

DQ401093, Nocardioides marinus, Nocardioidaceae 

AB271053, Nocardioides panacihumi, Nocardioidaceae 

FJ423762, Nocardioides terrae, Nocardioidaceae 

DQ786794, Nocardioides insulae, Nocardioidaceae 

AY423719, Nocardioides aestuarii, Nocardioidaceae 

AB273624, Nocardioides exalbidus, Nocardioidaceae 

AM295258, Nocardioides hwasunensis, Nocardioidaceae 

AY423718, Nocardioides ganghwensis, Nocardioidaceae 

AJ698724, Nocardioides oleivorans, Nocardioidaceae 

DQ411542, Nocardioides furvisabuli, Nocardioidaceae 

GU784866, Nocardioides alpinus, Nocardioidaceae 

EF466110, Nocardioides sediminis, Nocardioidaceae 

EF363712, Nocardioides terrigena, Nocardioidaceae 

AF529063, Nocardioides aquiterrae, Nocardioidaceae 

U61298, Nocardioides pyridinolyticus, Nocardioidaceae 

FJ750845, Nocardioides caricicola, Nocardioidaceae 

EF466121, Nocardioides dilutus, Nocardioidaceae 

EF466122, Nocardioides halotolerans, Nocardioidaceae 

EF555584, Nocardioides hankookensis, Nocardioidaceae 

EF626689, Nocardioides fonticola, Nocardioidaceae 

AF005008, Nocardioides plantarum, Nocardioidaceae 

GQ339904, Nocardioides ginsengagri, Nocardioidaceae 

FJ666101, Nocardioides panacisoli, Nocardioidaceae 

EF466114, Nocardioides bigeumensis, Nocardioidaceae 

DQ121389, Nocardioides lentus, Nocardioidaceae 

X94145, Nocardioides aquaticus, Nocardioidaceae 

AM981198, Nocardioides hungaricus, Nocardioidaceae 

AY835924, Nocardioides kribbensis, Nocardioidaceae 

EU143365, Nocardioides basaltis, Nocardioidaceae 

DQ401092, Nocardioides salarius, Nocardioidaceae 

EF633986, Nocardioides dokdonensis, Nocardioidaceae 

AM422448, Nocardioides marinisabuli, Nocardioidaceae 

AM398438, Nocardioides daphniae, Nocardioidaceae 

AM295338, Marmoricola aequoreus, Nocardioidaceae 

FN386723, Marmoricola korecus, Nocardioidaceae 

Y18629, Marmoricola aurantiacus, type sp., Nocardioidaceae 

FN386750, Marmoricola scoriae, Nocardioidaceae 

AB544079, Nocardioides iriomotensis, Nocardioidaceae 

EF466117, Nocardioides mesophilus, Nocardioidaceae 

EF466120, Marmoricola bigeumensis, Nocardioidaceae 

GQ339901, Nocardioides ginsengisegetis, Nocardioidaceae 

EF466115, Nocardioides koreensis, Nocardioidaceae 

AY633969, Nocardioides alkalitolerans, Nocardioidaceae 

AF005006, Nocardioides jensenii, Nocardioidaceae 

FJ842646, Nocardioides daedukensis, Nocardioidaceae 

AY928902, Nocardioides dubius, Nocardioidaceae 

JF937066, Nocardioides daejeonensis, Nocardioidaceae 

AB245394, Aeromicrobium ginsengisoli, Nocardioidaceae 

AB245387, Aeromicrobium panaciterrae, Nocardioidaceae 

AY166703, Aeromicrobium marinum, Nocardioidaceae 

AF005022, Aeromicrobium fastidiosum, Nocardioidaceae 

AY822044, Aeromicrobium alkaliterrae, Nocardioidaceae 

EF133690, Aeromicrobium flavum, Nocardioidaceae 

DQ411541, Aeromicrobium tamlense, Nocardioidaceae 

AF005021, Aeromicrobium erythreum, type sp., Nocardioidaceae 

AM778683, Aeromicrobium ponti, Nocardioidaceae 

FJ042789, Aeromicrobium halocynthiae, Nocardioidaceae 

Propionibacteriaceae (44) 

AJ704570, Propionibacterium acidipropionici, Propionibacteriaceae 

AF234623, Propionibacterium microaerophilum, Propionibacteriaceae 

AJ704571, Propionibacterium jensenii, Propionibacteriaceae 

AJ704572, Propionibacterium thoenii, Propionibacteriaceae 

AJ003057, Propionibacterium granulosum, Propionibacteriaceae 

AJ003055, Propionibacterium avidum, Propionibacteriaceae 

AJ003058, Propionibacterium propionicum, Propionibacteriaceae 

AB042288, Propionibacterium acnes, Propionibacteriaceae 

EU979537, Propionibacterium acidifaciens, Propionibacteriaceae 

AF225962, Propionibacterium australiense, Propionibacteriaceae 

D82046, Propionibacterium cyclohexanicum, Propionibacteriaceae 

Y10819, Propionibacterium freudenreichii subsp. shermanii, Propionibacteriaceae 

X53217, Propionibacterium freudenreichii subsp. freudenreichii, type sp., Propionibacteriaceae 

AF038504, Tessaracoccus bendigoensis, type sp., Propionibacteriaceae 

AM393882, Tessaracoccus flavescens, Propionibacteriaceae 

FM178840, Tessaracoccus lubricantis, Propionibacteriaceae 

DQ196625, Brooklawnia cerclae, type sp., Propionibacteriaceae 

AJ003056, Propionimicrobium lymphophilum, type sp., Propionibacteriaceae 

GU111566, Tessaracoccus oleiagri, Propionibacteriaceae 

D85487, Luteococcus japonicus, type sp., Propionibacteriaceae 

AJ416758, Luteococcus sanguinis, Propionibacteriaceae 

AJ132334, Luteococcus peritonei, Propionibacteriaceae 

DQ830982, Aestuariimicrobium kwangyangense, type sp., Propionibacteriaceae 

Z78206, Friedmanniella antarctica, type sp., Propionibacteriaceae 

AF062535, Friedmanniella spumicola, Propionibacteriaceae 

AB445456, Friedmanniella sagamiharensis, Propionibacteriaceae 

AB445455, Friedmanniella okinawensis, Propionibacteriaceae 

AF084529, Friedmanniella capsulata, Propionibacteriaceae 

AJ132943, Friedmanniella lacustris, Propionibacteriaceae 

AB445453, Friedmanniella luteola, Propionibacteriaceae 

AB445454, Friedmanniella lucida, Propionibacteriaceae 

EF601828, Microlunatus aurantiacus, Propionibacteriaceae 

Z78207, Microlunatus phosphovorus, type sp., Propionibacteriaceae 

AB245389, Microlunatus ginsengisoli, Propionibacteriaceae 

FN556016, Microlunatus parietis, Propionibacteriaceae 

FJ807672, Microlunatus soli, Propionibacteriaceae 

AB271051, Microlunatus panaciterrae, Propionibacteriaceae 

FN552748, Auraticoccus monumenti, type sp., Propionibacteriaceae 

FR733712, Propionicimonas paludicola, type sp., Propionibacteriaceae 

DQ176646, Propionicicella superfundia, type sp., Propionibacteriaceae 

AB012607, Micropruina glycogenica, type sp., Propionibacteriaceae 

AB298731, Propioniciclava tarda, type sp., Propionibacteriaceae 

AY566575, Granulicoccus phenolivorans, type sp., Propionibacteriaceae 

AF227165, Propioniferax innocua, type sp., Propionibacteriaceae 

EF126967, Kribbella aluminosa, Nocardioidaceae 

AY995147, Kribbella swartbergensis, Nocardioidaceae 

AY253866, Kribbella jejuensis, Nocardioidaceae 

AY253862, Kribbella solani, Nocardioidaceae 

EF472955, Kribbella hippodromi, Nocardioidaceae 

AM778575, Kribbella catacumbae, Nocardioidaceae 

AY995146, Kribbella karoonensis, Nocardioidaceae 

AY253864, Kribbella sandramycini, Nocardioidaceae 

AY082061, Kribbella yunnanensis, Nocardioidaceae

AY082063, Kribbella antibiotica, Nocardioidaceae 

AB245391, Kribbella ginsengisoli, Nocardioidaceae 

Y09159, Kribbella koreensis, Nocardioidaceae 

AM778577, Kribbella sancticallisti, Nocardioidaceae 

HM368615, Kribbella amoyensis, Nocardioidaceae 

AY253863, Kribbella flavida, type sp., Nocardioidaceae 

AY082062, Kribbella alba, Nocardioidaceae 

AJ811962, Kribbella lupini, Nocardioidaceae 

CP000481, Acidothermus cellulolyticus, type sp., Acidothermaceae 

AB478418, Euzebya tangerina, type sp., Euzebyaceae 

EF422408, Nitriliruptor alkaliphilus, type sp., Nitriliruptoraceae 

Acidimicrobiaceae (4) 

U75647, Acidimicrobium ferrooxidans, type sp., Acidimicrobiaceae 

AF251436, Ferrimicrobium acidiphilum, type sp., Acidimicrobiaceae 

AY140237, Ferrithrix thermotolerans, type sp., Acidimicrobiaceae 

AB517669, Aciditerrimonas ferrireducens, type sp., Unclassified Acidimicrobineae 

AB360448, Iamia majanohamensis, type sp., Iamiaceae 

AB360343, Ilumatobacter fluminis, type sp., Acidimicrobiaceae 

Coriobacteriaceae (29) 

AB306661, Adlercreutzia equolifaciens, type sp., Coriobacteriaceae 

AB266102, Asaccharobacter celatus, type sp., Coriobacteriaceae 

DQ789120, Enterorhabdus caecimuris, Coriobacteriaceae 

AM747811, Enterorhabdus mucosicola, type sp., Coriobacteriaceae 

U43492, Denitrobacterium detoxificans, type sp., Coriobacteriaceae 

AF292375, Eggerthella lenta, type sp., Coriobacteriaceae 

AY321958, Eggerthella sinensis, Coriobacteriaceae 

AY288517, Paraeggerthella hongkongensis, type sp., Coriobacteriaceae 

AM886059, Gordonibacter pamelaeae, type sp., Coriobacteriaceae 

AB019260, Cryptobacterium curtum, type sp., Coriobacteriaceae 

AF101240, Slackia exigua, type sp., Coriobacteriaceae 

AF101241, Slackia heliotrinireducens, Coriobacteriaceae 

EU826403, Slackia isoflavoniconvertens, Coriobacteriaceae 

AJ608686, Slackia faecicanis, Coriobacteriaceae 

AB490806, Slackia piriformis, Coriobacteriaceae 

EU377663, Slackia equolifaciens, Coriobacteriaceae 

AB031063, Collinsella intestinalis, Coriobacteriaceae 

AB031061, Collinsella stercoris, Coriobacteriaceae 

AB011816, Collinsella aerofaciens, type sp., Coriobacteriaceae 

AB490807, Collinsella tanakaei, Coriobacteriaceae 

X79048, Coriobacterium glomerans, type sp., Coriobacteriaceae 

AF292373, Olsenella uli, type sp., Coriobacteriaceae 

FN178463, Olsenella umbonata, Coriobacteriaceae 

AF292374, Olsenella profusa, Coriobacteriaceae 

Y17195, Atopobium vaginae, Coriobacteriaceae 

L34620, Atopobium fossor, Coriobacteriaceae 

X67148, Atopobium minutum, type sp., Coriobacteriaceae 

CP001721, Atopobium parvulum, Coriobacteriaceae 

AF292371, Atopobium rimae, Coriobacteriaceae 

Solirubrobacterales (7) 

Patulibacteraceae (3) 

AB193261, Patulibacter minatonensis, type sp., Patulibacteraceae 

EU710748, Patulibacter ginsengiterrae, Patulibacteraceae 

AJ871306, Patulibacter americanus, Patulibacteraceae 

CP001854, Conexibacter woesei, type sp., Conexibacteraceae 

Solirubrobacteraceae (3) 

AY039806, Solirubrobacter pauli, type sp., Solirubrobacteraceae 

AB245334, Solirubrobacter soli, Solirubrobacteraceae 

EU332825, Solirubrobacter ginsenosidimutans, Solirubrobacteraceae 

AJ458462, Thermoleophilum album, type sp., Thermoleophilaceae 

JF423906, Gaiella occulta, type sp., Gaiellaceae 

Rubrobacteraceae (3) 

U65647, Rubrobacter radiotolerans, type sp., Rubrobacteraceae 

AF465803, Rubrobacter taiwanensis, Rubrobacteraceae 

CP000386, Rubrobacter xylanophilus , Rubrobacteraceae 

Chloroflexi (20) 

Chloroflexi (5) 

Chloroflexales (3) 

Thermomicrobia (2) 

CP001337, Chloroflexus aggregans, Chloroflexaceae 

D38365, Chloroflexus aurantiacus, type sp., Chloroflexaceae 

CP000804, Roseiflexus castenholzii, type sp., Chloroflexaceae 

Herpetosiphonales (2) 

CP000875, Herpetosiphon aurantiacus, type sp., Herpetosiphonaceae 

AF039293, Herpetosiphon geysericola, Herpetosiphonaceae 

AJ420142, Sphaerobacter thermophilus, type sp., Sphaerobacteraceae 

M34115, Thermomicrobium roseum, type sp., Thermomicrobiaceae 

Ktedonobacteria (4) 

Ktedonobacterales (2) 

AM180156, Ktedonobacter racemifer, type sp., Ktedonobacteraceae 

AB500145, Thermosporothrix hazakensis, type sp., Thermosporotrichaceae 

Thermogemmatisporales (2) 

AB547913, Thermogemmatispora foliorum, Thermogemmatisporaceae 

AB547912, Thermogemmatispora onikobensis, type sp., Thermogemmatisporaceae 

Anaerolineae (6) 

Firmicutes and Tenericutes (2081) 

AB243672, Bellilinea caldifistulae, type sp., Anaerolineaceae 

AB109439, Levilinea saccharolytica, type sp., Anaerolineaceae 

AB243673, Longilinea arvoryzae, type sp., Anaerolineaceae 

AB109438, Leptolinea tardivitalis, type sp., Anaerolineaceae 

AB046413, Anaerolinea thermophila, type sp., Anaerolineaceae 

AB109437, Anaerolinea thermolimosa, Anaerolineaceae 

AB067647, Caldilinea aerophila, type sp., Caldilineaceae 

HM134893, Caldilinea tarbellica, Caldilineaceae 

EU679419, Dehalogenimonas lykanthroporepellens, type sp., Dehalococcoidetes

Bacilli and Tenericutes (1402) 

Lactobacillales (407) 

Lactobacillaceae and Leuconostocaceae (205) 

AB366386, Lactobacillus otakiensis, Lactobacillaceae 

AB366385, Lactobacillus sunkii, Lactobacillaceae 

AJ621553, Lactobacillus kefiri, Lactobacillaceae 

AB205056, Lactobacillus parabuchneri, Lactobacillaceae 

AY026750, Lactobacillus parakefiri, Lactobacillaceae 

AB205055, Lactobacillus buchneri, Lactobacillaceae 

AB366388, Lactobacillus kisonensis, Lactobacillaceae 

AB366389, Lactobacillus rapi, Lactobacillaceae 

AF264701, Lactobacillus diolivorans, Lactobacillaceae 

AB262734, Lactobacillus parafarraginis, Lactobacillaceae 

AB262731, Lactobacillus farraginis, Lactobacillaceae 

M58821, Lactobacillus hilgardii, Lactobacillaceae 

AB602570, Lactobacillus senioris, Lactobacillaceae 

X95421, Lactobacillus lindneri, Lactobacillaceae 

AB498045, Lactobacillus florum, Lactobacillaceae 

X76327, Lactobacillus sanfranciscensis, Lactobacillaceae 

X76330, Lactobacillus fructivorans, Lactobacillaceae 

AJ621552, Lactobacillus homohiochii, Lactobacillaceae 

Y11374, Lactobacillus kunkeei, Lactobacillaceae 

AB572588, Lactobacillus ozensis, Lactobacillaceae 

FJ904277, Lactobacillus koreensis, Lactobacillaceae 

FN185731, Lactobacillus paucivorans, Lactobacillaceae 

AM158249, Lactobacillus parabrevis, Lactobacillaceae 

AJ632219, Lactobacillus hammesii, Lactobacillaceae 

AB297927, Lactobacillus senmaizukei, Lactobacillaceae 

M58810, Lactobacillus brevis, Lactobacillaceae 

AJ534844, Lactobacillus spicheri, Lactobacillaceae 

AJ632158, Lactobacillus acidifarinae, Lactobacillaceae 

AJ632157, Lactobacillus zymae, Lactobacillaceae 

AM259118, Lactobacillus namurensis, Lactobacillaceae 

AB005893, Lactobacillus collinoides, Lactobacillaceae 

AJ786665, Lactobacillus paracollinoides, Lactobacillaceae 

AB365975, Lactobacillus odoratitofui, Lactobacillaceae 

AB282889, Lactobacillus similis, Lactobacillaceae 

EU678893, Lactobacillus kimchicus, Lactobacillaceae 

AM113783, Lactobacillus malefermentans, Lactobacillaceae 

D79211, Lactobacillus pentosus, Lactobacillaceae 

AJ965482, Lactobacillus plantarum subsp. plantarum, Lactobacillaceae 

AJ640078, Lactobacillus plantarum subsp. argentoratensis, Lactobacillaceae 

AJ306297, Lactobacillus paraplantarum, Lactobacillaceae 

HM443954, Lactobacillus xiangfangensis, Lactobacillaceae 

AM905388, Lactobacillus fabifermentans, Lactobacillaceae 

AY253659, Lactobacillus antri, Lactobacillaceae 

X94229, Lactobacillus oris, Lactobacillaceae 

X94230, Lactobacillus panis, Lactobacillaceae 

X76329, Lactobacillus pontis, Lactobacillaceae 

AF243177, Lactobacillus vaginalis, Lactobacillaceae 

AJ250074, Lactobacillus frumenti, Lactobacillaceae 

L23507, Lactobacillus reuteri, Lactobacillaceae 

AM113776, Lactobacillus coleohominis, Lactobacillaceae 

AM279150, Lactobacillus secaliphilus, Lactobacillaceae 

AF333975, Lactobacillus ingluviei, Lactobacillaceae 

AB288050, Lactobacillus equigenerosi, Lactobacillaceae 

AY253658, Lactobacillus gastricus, Lactobacillaceae 

ACGI01000130, Lactobacillus fermentum, Lactobacillaceae 

AF126738, Lactobacillus mucosae, Lactobacillaceae 

AJ564009, Lactobacillus rossiae, Lactobacillaceae 

AB370882, Lactobacillus siliginis, Lactobacillaceae 

AY733084, Lactobacillus oligofermentans, Lactobacillaceae 

AJ575744, Lactobacillus suebicus, Lactobacillaceae 

AJ621556, Lactobacillus vaccinostercus, Lactobacillaceae 

AF469172, Lactobacillus casei, Lactobacillaceae 

D86516, Lactobacillus zeae, Lactobacillaceae 

AB181950, Lactobacillus paracasei subsp. tolerans, Lactobacillaceae 

D79212, Lactobacillus paracasei subsp. paracasei, Lactobacillaceae 

D16552, Lactobacillus rhamnosus, Lactobacillaceae 

AB257864, Lactobacillus camelliae, Lactobacillaceae 

AF000162, Lactobacillus manihotivorans, Lactobacillaceae 

AB608051, Lactobacillus nasuensis, Lactobacillaceae 

AF413523, Lactobacillus pantheris, Lactobacillaceae 

AB257863, Lactobacillus thailandensis, Lactobacillaceae 

M58831, Lactobacillus sharpeae, Lactobacillaceae 

AJ305320, Pediococcus acidilactici, Lactobacillaceae 

AB362985, Pediococcus lolii, Lactobacillaceae 

AJ305321, Pediococcus pentosaceus, Lactobacillaceae 

AJ621555, Pediococcus claussenii, Lactobacillaceae 

AJ973157, Pediococcus stilesii, Lactobacillaceae 

AM709786, Pediococcus argentinicus, Lactobacillaceae 

AY956788, Pediococcus cellicola, Lactobacillaceae 

AB258357, Pediococcus siamensis, Lactobacillaceae 

AY956789, Pediococcus ethanolidurans, Lactobacillaceae 

AJ318414, Pediococcus damnosus, type sp., Lactobacillaceae 

AJ271383, Pediococcus inopinatus, Lactobacillaceae 

D88528, Pediococcus parvulus, Lactobacillaceae 

AB602569, Lactobacillus saniviri, Lactobacillaceae 

AF183558, Lactobacillus kimchii, Lactobacillaceae 

AB018528, Lactobacillus paralimentarius, Lactobacillaceae 

AY681134, Lactobacillus bobalius, Lactobacillaceae 

M58804, Lactobacillus alimentarius, Lactobacillaceae 

M58817, Lactobacillus farciminis, Lactobacillaceae 

HQ322270, Lactobacillus futsaii, Lactobacillaceae 

AM285450, Lactobacillus crustorum, Lactobacillaceae 

AJ313530, Lactobacillus mindensis, Lactobacillaceae 

AY690834, Lactobacillus nantensis, Lactobacillaceae 

AJ496791, Lactobacillus versmoldensis, Lactobacillaceae 

AB332024, Lactobacillus nodensis, Lactobacillaceae 

AJ576006, Lactobacillus tucceti, Lactobacillaceae 

AJ575741, Lactobacillus coryniformis subsp. torquens, Lactobacillaceae 

M58813, Lactobacillus coryniformis subsp. coryniformis, Lactobacillaceae 

AJ576007, Lactobacillus rennini, Lactobacillaceae 

AM113777, Lactobacillus curvatus, Lactobacillaceae 

AM113784, Lactobacillus sakei subsp. sakei, Lactobacillaceae 

AY204889, Lactobacillus sakei subsp. carnosus, Lactobacillaceae 

AM113778, Lactobacillus graminis, Lactobacillaceae 

AB370875, Lactobacillus fuchuensis, Lactobacillaceae 

Y17361, Lactobacillus amylolyticus, Lactobacillaceae 

AJ306298, Lactobacillus hamsteri, Lactobacillaceae 

AY944408, Lactobacillus amylovorus, Lactobacillaceae

AB107638, Lactobacillus kitasatonis, Lactobacillaceae 

AY773947, Lactobacillus acidophilus, Lactobacillaceae 

AM113782, Lactobacillus kefiranofaciens subsp. kefirgranum, Lactobacillaceae 

AM113781, Lactobacillus kefiranofaciens subsp. kefiranofaciens, Lactobacillaceae 

AF257097, Lactobacillus crispatus, Lactobacillaceae 

AY253660, Lactobacillus ultunensis, Lactobacillaceae 

AJ417737, Lactobacillus gallinarum, Lactobacillaceae 

AM113779, Lactobacillus helveticus, Lactobacillaceae 

AY253657, Lactobacillus kalixensis, Lactobacillaceae 

FR681899, Lactobacillus gigeriorum, Lactobacillaceae 

AJ306299, Lactobacillus intestinalis, Lactobacillaceae 

AY773949, Lactobacillus delbrueckii subsp. delbrueckii, type sp., Lactobacillaceae 

AY050173, Lactobacillus delbrueckii subsp. lactis, Lactobacillaceae 

CR954253, Lactobacillus delbrueckii subsp. bulgaricus , Lactobacillaceae 

AY421720, Lactobacillus delbrueckii subsp. indicus, Lactobacillaceae 

AB290830, Lactobacillus equicursoris, Lactobacillaceae 

M58801, Lactobacillus acetotolerans, Lactobacillaceae 

Y18654, Lactobacillus fornicalis, Lactobacillaceae 

AF243176, Lactobacillus jensenii, Lactobacillaceae 

AJ272391, Lactobacillus psittaci, Lactobacillaceae 

AF519171, Lactobacillus gasseri, Lactobacillaceae 

AJ002515, Lactobacillus johnsonii, Lactobacillaceae 

EU487512, Lactobacillus taiwanensis, Lactobacillaceae 

Y16329, Lactobacillus iners, Lactobacillaceae 

M58806, Lactobacillus amylophilus, Lactobacillaceae 

AM236149, Lactobacillus amylotrophicus, Lactobacillaceae 

AY683322, Lactobacillus concavus, Lactobacillaceae 

D87679, Lactobacillus dextrinicus, Lactobacillaceae 

AB196123, Lactobacillus harbinensis, Lactobacillaceae 

Y19167, Lactobacillus perolens, Lactobacillaceae 

AB268118, Lactobacillus composti, Lactobacillaceae 

AF049745, Paralactobacillus selangorensis, type sp., Lactobacillaceae 

Leuconostocaceae (38) 

AF175402, Leuconostoc gelidum, Leuconostocaceae 

AF173986, Leuconostoc kimchii, Leuconostocaceae 

AF439560, Leuconostoc inhae, Leuconostocaceae 

AF231131, Leuconostoc gasicomitatum, Leuconostocaceae 

AB022925, Leuconostoc carnosum, Leuconostocaceae 

HQ263024, Leuconostoc miyukkimchii, Leuconostocaceae 

AF111948, Leuconostoc citreum, Leuconostocaceae 

AM600682, Leuconostoc holzapfelii, Leuconostocaceae 

AB023968, Leuconostoc lactis, Leuconostocaceae 

AM940225, Leuconostoc palmae, Leuconostocaceae 

AB023237, Leuconostoc pseudomesenteroides, Leuconostocaceae 

AB023244, Leuconostoc mesenteroides subsp. dextranicum, Leuconostocaceae 

CP000414, Leuconostoc mesenteroides subsp. mesenteroides , type sp., Leuconostocaceae 

AB023247, Leuconostoc mesenteroides subsp. cremoris, Leuconostocaceae 

HM443957, Leuconostoc mesenteroides subsp. suionicum, Leuconostocaceae 

AY169967, Fructobacillus pseudoficulneus, Leuconostocaceae 

AB542054, Fructobacillus tropaeoli, Leuconostocaceae 

AF360736, Fructobacillus ficulneus, Leuconostocaceae 

AJ780981, Fructobacillus durionis, Leuconostocaceae 

AF360737, Fructobacillus fructosus, Leuconostocaceae 

AF360738, Leuconostoc fallax, Leuconostocaceae 

AB221475, Oenococcus kitaharae, Leuconostocaceae 

AB022924, Oenococcus oeni, type sp., Leuconostocaceae 

AB022926, Weissella halotolerans, Leuconostocaceae 

FN813251, Weissella ceti, Leuconostocaceae 

AB022920, Weissella minor, Leuconostocaceae 

AB023236, Weissella viridescens, type sp., Leuconostocaceae 

AB023238, Weissella paramesenteroides, Leuconostocaceae 

AB023838, Weissella thailandensis, Leuconostocaceae 

S67831, Weissella hellenica, Leuconostocaceae 

AB023241, Weissella confusa, Leuconostocaceae 

AJ295989, Weissella cibaria, Leuconostocaceae 

M23038, Weissella kandleri, Leuconostocaceae 

AY035891, Weissella koreensis, Leuconostocaceae 

AY028260, Weissella soli, Leuconostocaceae 

FM179678, Weissella fabaria, Leuconostocaceae 

AM882997, Weissella ghanensis, Leuconostocaceae 

EU439435, Weissella beninensis, Leuconostocaceae 

AB523780, Lactobacillus floricola, Lactobacillaceae 

AB023836, Lactobacillus acidipiscis, Lactobacillaceae 

AB326358, Lactobacillus pobuzihii, Lactobacillaceae 

M58808, Lactobacillus aviarius subsp. aviarius, Lactobacillaceae 

AB267406, Lactobacillus hayakitensis, Lactobacillaceae 

AF089108, Lactobacillus salivarius, Lactobacillaceae 

AY255802, Lactobacillus saerimneri, Lactobacillaceae 

AM292799, Lactobacillus ceti, Lactobacillaceae 

M58803, Lactobacillus agilis, Lactobacillaceae 

AB048833, Lactobacillus equi, Lactobacillaceae 

AB326354, Lactobacillus ruminis, Lactobacillaceae 

AB326350, Lactobacillus animalis, Lactobacillaceae 

AJ621554, Lactobacillus murinus, Lactobacillaceae 

AJ871178, Lactobacillus apodemi, Lactobacillaceae 

DQ523489, Lactobacillus ghanensis, Lactobacillaceae 

AB162131, Lactobacillus nagelii, Lactobacillaceae 

AJ576009, Lactobacillus vini, Lactobacillaceae 

AY681127, Lactobacillus oeni, Lactobacillaceae 

AB154519, Lactobacillus satsumensis, Lactobacillaceae 

AB365976, Lactobacillus capillatus, Lactobacillaceae 

AB433982, Lactobacillus sucicola, Lactobacillaceae 

DQ664203, Lactobacillus aquaticus, Lactobacillaceae 

AY681126, Lactobacillus uvarum, Lactobacillaceae 

EU074850, Lactobacillus hordei, Lactobacillaceae 

M58824, Lactobacillus mali, Lactobacillaceae 

AM905389, Lactobacillus cacaonum, Lactobacillaceae 

AB033209, Lactobacillus algidus, Lactobacillaceae 

Enterococcaceae and Streptococcaceae (145) 

Streptococcaceae (88) 

AY099095, Streptococcus oligofermentans, Streptococcaceae 

AF432856, Streptococcus sinensis, Streptococcaceae 

AY188347, Streptococcus cristatus, Streptococcaceae 

AY485604, Streptococcus australis, Streptococcaceae 

AF003933, Streptococcus parasanguinis, Streptococcaceae 

AF003930, Streptococcus pneumoniae, Streptococcaceae 

AY612844, Streptococcus pseudopneumoniae, Streptococcaceae 

AF003929, Streptococcus mitis, Streptococcaceae 

AY485602, Streptococcus oralis, Streptococcaceae 

AY485603, Streptococcus infantis, Streptococcaceae

AF003928, Streptococcus sanguinis, Streptococcaceae 

AY309095, Streptococcus constellatus subsp. pharyngis, Streptococcaceae 

AF104676, Streptococcus constellatus subsp. constellatus, Streptococcaceae 

AF104671, Streptococcus intermedius, Streptococcaceae 

AF104678, Streptococcus anginosus, Streptococcaceae 

AY769997, Streptococcus massiliensis, Streptococcaceae 

AF003931, Streptococcus gordonii, Streptococcaceae 

GU045364, Streptococcus lactarius, Streptococcaceae 

AB008314, Streptococcus peroris, Streptococcaceae 

AM774228, Streptococcus plurextorum, Streptococcaceae 

AM941160, Streptococcus porci, Streptococcaceae 

AF009477, Streptococcus suis, Streptococcaceae 

AJ307888, Streptococcus gallinaceus, Streptococcaceae 

AF201898, Streptococcus hyointestinalis, Streptococcaceae 

AF429763, Streptococcus infantarius subsp. coli, Streptococcaceae 

AJ297215, Streptococcus lutetiensis, Streptococcaceae 

AF177729, Streptococcus infantarius subsp. infantarius, Streptococcaceae 

AJ301607, Streptococcus equinus, Streptococcaceae 

DQ232528, Streptococcus gallolyticus subsp. pasteurianus, Streptococcaceae 

X94337, Streptococcus gallolyticus subsp. gallolyticus, Streptococcaceae 

Z94012, Streptococcus gallolyticus subsp. macedonicus, Streptococcaceae 

AF201899, Streptococcus alactolyticus, Streptococcaceae 

AY188352, Streptococcus salivarius subsp. salivarius, Streptococcaceae 

AY188353, Streptococcus vestibularis, Streptococcaceae 

AY188354, Streptococcus salivarius subsp. thermophilus, Streptococcaceae 

FN643224, Streptococcus porcorum, Streptococcaceae 

AJ420201, Streptococcus ratti, Streptococcaceae 

AB501126, Streptococcus ursoris, Streptococcaceae 

AY188348, Streptococcus mutans, Streptococcaceae 

AJ564067, Streptococcus devriesei, Streptococcaceae 

AB469560, Streptococcus dentapri, Streptococcaceae 

AY188351, Streptococcus macacae, Streptococcaceae 

AY058218, Streptococcus ferus, Streptococcaceae 

AB002516, Streptococcus equi subsp. zooepidemicus, Streptococcaceae 

DQ303186, Streptococcus equi subsp. equi, Streptococcaceae 

AJ605748, Streptococcus equi subsp. ruminatorum, Streptococcaceae 

AB259061, Streptococcus dentirousetti, Streptococcaceae 

AY188350, Streptococcus downei, Streptococcaceae 

AY188349, Streptococcus sobrinus, Streptococcaceae 

AJ420198, Streptococcus criceti, Streptococcaceae 

AB182324, Streptococcus orisuis, Streptococcaceae 

AJ409287, Streptococcus entericus, Streptococcaceae 

AY232832, Streptococcus minor, Streptococcaceae 

Y07601, Streptococcus hyovaginalis, Streptococcaceae 

Y09007, Streptococcus thoraltensis, Streptococcaceae 

AJ634751, Streptococcus marimammalium, Streptococcaceae 

AM396401, Streptococcus merionis, Streptococcaceae 

FN813250, Streptococcus rupicaprae, Streptococcaceae 

Y17358, Streptococcus ovis, Streptococcaceae 

EF364098, Streptococcus caballi, Streptococcaceae 

AF124350, Streptococcus orisratti, Streptococcaceae 

EF364097, Streptococcus henryi, Streptococcaceae 

AB023573, Streptococcus uberis, Streptococcaceae 

AJ131965, Streptococcus urinalis, Streptococcaceae 

AB002483, Streptococcus canis, Streptococcaceae 

AB002521, Streptococcus pyogenes, type sp., Streptococcaceae 

DQ462421, Streptococcus ictaluri, Streptococcaceae 

AJ606047, Streptococcus castoreus, Streptococcaceae 

DQ303209, Streptococcus pseudoporcinus, Streptococcaceae 

AB002523, Streptococcus porcinus, Streptococcaceae 

AF176103, Streptococcus didelphis, Streptococcaceae 

AJ621053, Streptococcus phocae, Streptococcaceae 

AB023574, Streptococcus agalactiae, Streptococcaceae 

AJ606046, Streptococcus halichoeri, Streptococcaceae 

DQ232540, Streptococcus dysgalactiae subsp. equisimilis, Streptococcaceae 

AB002485, Streptococcus dysgalactiae subsp. dysgalactiae, Streptococcaceae 

AY584477, Streptococcus parauberis, Streptococcaceae 

AF335572, Streptococcus iniae, Streptococcaceae 

AB100804, Lactococcus lactis subsp. hordniae, Streptococcaceae 

AB100803, Lactococcus lactis subsp. lactis, type sp., Streptococcaceae 

AB100802, Lactococcus lactis subsp. cremoris, Streptococcaceae 

EU770697, Lactococcus lactis subsp. tructae, Streptococcaceae 

AB598994, Lactococcus garvieae, Streptococcaceae 

AJ439543, Lactovum miscens, type sp., Streptococcaceae 

EF694028, Lactococcus chungangensis, Streptococcaceae 

EF694030, Lactococcus raffinolactis, Streptococcaceae 

DQ343754, Lactococcus piscium, Streptococcaceae 

EF694029, Lactococcus plantarum, Streptococcaceae 

AY533171, Pilibacter termitis, type sp., Enterococcaceae 

AY396047, Enterococcus hermanniensis, Enterococcaceae 

DQ411812, Enterococcus pallens, Enterococcaceae 

AF133535, Enterococcus avium, Enterococcaceae 

Y18296, Enterococcus raffinosus, Enterococcaceae 

DQ411810, Enterococcus gilvus, Enterococcaceae 

AJ301835, Enterococcus malodoratus, Enterococcaceae 

AJ891167, Enterococcus devriesei, Enterococcaceae 

AF061002, Enterococcus pseudoavium, Enterococcaceae 

HQ378515, Enterococcus viikkiensis, Enterococcaceae 

AJ301830, Enterococcus faecium, Enterococcaceae 

GU983697, Enterococcus lactis, Enterococcaceae 

AF539705, Enterococcus ratti, Enterococcaceae 

Y17302, Enterococcus hirae, Enterococcaceae 

AJ276354, Enterococcus durans, Enterococcaceae 

EF197994, Enterococcus thailandicus, Enterococcaceae 

AF061013, Enterococcus mundtii, Enterococcaceae 

AJ271329, Enterococcus villorum, Enterococcaceae 

AF039903, Enterococcus casseliflavus, Enterococcaceae 

AF039900, Enterococcus gallinarum, Enterococcaceae 

X76177, Enterococcus canis, Enterococcaceae 

AY862507, Melissococcus plutonius, type sp., Enterococcaceae 

AJ888906, Enterococcus canintestini, Enterococcaceae 

AF061007, Enterococcus dispar, Enterococcaceae 

EU522087, Tetragenococcus halophilus subsp. flandriensis, Enterococcaceae 

D88668, Tetragenococcus halophilus subsp. halophilus, type sp., Enterococcaceae 

AJ301840, Tetragenococcus solitarius, Enterococcaceae 

AY690334, Tetragenococcus koreensis, Enterococcaceae 

D88824, Tetragenococcus muriaticus, Enterococcaceae 

EU522083, Tetragenococcus osmophilus, Enterococcaceae 

EF154454, Enterococcus camelliae, Enterococcaceae 

AJ582753, Enterococcus italicus, Enterococcaceae 

AF061001, Enterococcus sulfureus, Enterococcaceae 

AF061004, Enterococcus saccharolyticus, Enterococcaceae 

Y11621, Enterococcus asini, Enterococcaceae

AF061009, Enterococcus cecorum, Enterococcaceae 

AF061006, Enterococcus columbae, Enterococcaceae 

AJ854484, Catellicoccus marimammalium, type sp., Enterococcaceae 

AJ877015, Enterococcus aquimarinus, Enterococcaceae 

AY028437, Enterococcus phoeniculicola, Enterococcaceae 

AY943820, Enterococcus caccae, Enterococcaceae 

AM039966, Enterococcus silesiacus, Enterococcaceae 

GU457264, Enterococcus ureasiticus, Enterococcaceae 

AF286832, Enterococcus haemoperoxidus, Enterococcaceae 

AF286831, Enterococcus moraviensis, Enterococcaceae 

HQ847537, Enterococcus plantarum, Enterococcaceae 

AB012212, Enterococcus faecalis, type sp., Enterococcaceae 

GU457262, Enterococcus quebecensis, Enterococcaceae 

AM039968, Enterococcus termitis, Enterococcaceae 

AF445297, Vagococcus elongatus, Enterococcaceae 

Y17152, Vagococcus lutrae, Enterococcaceae 

FJ211190, Vagococcus acidifermentans, Enterococcaceae 

FJ360897, Vagococcus penaei, Enterococcaceae 

AY179329, Vagococcus carniphilus, Enterococcaceae 

Y18098, Vagococcus fluvialis, type sp., Enterococcaceae 

Y18097, Vagococcus salmoninarum, Enterococcaceae 

AJ243326, Vagococcus fessus, Enterococcaceae 

GU459067, Pisciglobus halotolerans, type sp., Carnobacteriaceae 

Y17300, Desemzia incerta, type sp., Carnobacteriaceae 

AB268549, Alkalibacterium indicireducens, Carnobacteriaceae 

AB294166, Alkalibacterium pelagium, Carnobacteriaceae 

AB294165, Alkalibacterium thalassium, Carnobacteriaceae 

AF143511, Alkalibacterium olivapovliticus, type sp., Carnobacteriaceae 

AB188091, Alkalibacterium iburiense, Carnobacteriaceae 

AB125938, Alkalibacterium psychrotolerans, Carnobacteriaceae 

AB294171, Alkalibacterium kapii, Carnobacteriaceae 

AB555562, Alkalibacterium subtropicum, Carnobacteriaceae 

AB294167, Alkalibacterium putridalgicola, Carnobacteriaceae 

AB247277, Marinilactibacillus piezotolerans, Carnobacteriaceae 

AB083406, Marinilactibacillus psychrotolerans, type sp., Carnobacteriaceae 

AJ410303, Allofustis seminis, type sp., Carnobacteriaceae 

AF445248, Atopostipes suicloacalis, type sp., Carnobacteriaceae 

X59765, Alloiococcus otitis, type sp., Carnobacteriaceae 

X70907, Dolosigranulum pigrum, type sp., Carnobacteriaceae 

AJ634917, Atopococcus tabaci, type sp., Carnobacteriaceae 

AB430339, Lacticigenium naphtae, type sp., Carnobacteriaceae 

S86170, Carnobacterium funditum, Carnobacteriaceae 

AB083414, Carnobacterium mobile, Carnobacteriaceae 

Z73313, Carnobacterium inhibens, Carnobacteriaceae 

AF425608, Carnobacterium viridans, Carnobacteriaceae 

EU817500, Carnobacterium jeotgali, Carnobacteriaceae 

AF450136, Carnobacterium pleistocenium, Carnobacteriaceae 

AJ302648, Isobaculum melis, type sp., Carnobacteriaceae 

AJ387905, Carnobacterium gallinarum, Carnobacteriaceae 

M58825, Carnobacterium maltaromaticum, Carnobacteriaceae 

M58816, Carnobacterium divergens, type sp., Carnobacteriaceae 

AJ306612, Trichococcus collinsii, Carnobacteriaceae 

AF394926, Trichococcus patagoniensis, Carnobacteriaceae 

X87150, Trichococcus pasteurii, Carnobacteriaceae 

AJ306611, Trichococcus flocculiformis, type sp., Carnobacteriaceae 

AJ296179, Trichococcus palustris, Carnobacteriaceae 

Y16546, Atopobacter phocae, type sp., Carnobacteriaceae 

FM177901, Bavariicoccus seileri, type sp., Enterococcaceae 

D50540, Granulicatella adiacens, type sp., Carnobacteriaceae 

AF016390, Granulicatella elegans, Carnobacteriaceae 

Y16547, Granulicatella balaenopterae, Carnobacteriaceae 

Aerococcaceae (18) 

Y18053, Facklamia languida, Aerococcaceae 

AJ277381, Facklamia miroungae, Aerococcaceae 

Y10772, Facklamia hominis, type sp., Aerococcaceae 

Y15716, Facklamia ignava, Aerococcaceae 

Y17820, Facklamia tabacinasalis, Aerococcaceae 

Y16426, Ignavigranum ruoffiae, type sp., Aerococcaceae 

AJ012666, Dolosicoccus paucivorans, type sp., Aerococcaceae 

Y17312, Facklamia sourekii, Aerococcaceae 

AJ297627, Globicatella sulfidifaciens, Aerococcaceae 

Y17780, Eremococcus coleocola, type sp., Aerococcaceae 

D50541, Abiotrophia defectiva, type sp., Aerococcaceae 

D87677, Pediococcus urinaeequi, Lactobacillaceae 

ADNT01000041, Aerococcus viridans, type sp., Aerococcaceae 

AM230658, Aerococcus suis, Aerococcaceae 

AJ278341, Aerococcus urinaehominis, Aerococcaceae 

Y17005, Aerococcus christensenii, Aerococcaceae 

M77819, Aerococcus urinae, Aerococcaceae 

AJ276512, Aerococcus sanguinicola, Aerococcaceae 

Tenericutes (186) 

Mycoplasmatales (109) 

M24290, Mycoplasma agalactiae, Mycoplasmataceae 

U02968, Mycoplasma bovis, Mycoplasmataceae 

AF221118, Mycoplasma primatum, Mycoplasmataceae 

U16760, Mycoplasma leopharyngis, Mycoplasmataceae 

AF221116, Mycoplasma maculosum, Mycoplasmataceae 

U67943, Mycoplasma adleri, Mycoplasmataceae 

U15795, Mycoplasma felifaucium, Mycoplasmataceae 

AF221117, Mycoplasma opalescens, Mycoplasmataceae 

AF221111, Mycoplasma caviae, Mycoplasmataceae 

M24289, Mycoplasma fermentans, Mycoplasmataceae 

AF221119, Mycoplasma spermatophilum, Mycoplasmataceae 

AF221115, Mycoplasma lipofaciens, Mycoplasmataceae 

M24291, Mycoplasma bovigenitalium, Mycoplasmataceae 

M24582, Mycoplasma californicum, Mycoplasmataceae 

U16323, Mycoplasma simbae, Mycoplasmataceae 

AM774638, Mycoplasma mucosicanis, Mycoplasmataceae 

AF304324, Mycoplasma phocirhinis, Mycoplasmataceae 

AF221112, Mycoplasma columbinasale, Mycoplasmataceae 

AF221114, Mycoplasma iners, Mycoplasmataceae 

AF221113, Mycoplasma columbinum, Mycoplasmataceae 

L24105, Mycoplasma gallinarum, Mycoplasmataceae 

L24106, Mycoplasma meleagridis, Mycoplasmataceae 

U58997, Mycoplasma hyopharyngis, Mycoplasmataceae 

M24581, Mycoplasma lipophilum, Mycoplasmataceae 

AF412973, Mycoplasma citelli, Mycoplasmataceae 

AF412987, Mycoplasma oxoniensis, Mycoplasmataceae 

AF412975, Mycoplasma columborale, Mycoplasmataceae 

U22013, Mycoplasma sturni, Mycoplasmataceae

Entomoplasmatales (59) 

AF412971, Mycoplasma buteonis, Mycoplasmataceae 

AF412980, Mycoplasma gallopavonis, Mycoplasmataceae 

AF412981, Mycoplasma glycophilum, Mycoplasmataceae 

L08054, Mycoplasma corogypsi, Mycoplasmataceae 

AF340023, Mycoplasma canis, Mycoplasmataceae 

AF412978, Mycoplasma cynos, Mycoplasmataceae 

U44766, Mycoplasma bovirhinis, Mycoplasmataceae 

U16759, Mycoplasma leonicaptivi, Mycoplasmataceae 

X52083, Mycoplasma synoviae, Mycoplasmataceae 

U09787, Mycoplasma felis, Mycoplasmataceae 

AF412986, Mycoplasma mustelae, Mycoplasmataceae 

L24104, Mycoplasma gallinaceum, Mycoplasmataceae 

AF412989, Mycoplasma verecundum, Mycoplasmataceae 

AF412969, Mycoplasma alligatoris, Mycoplasmataceae 

AF412977, Mycoplasma crocodyli, Mycoplasmataceae 

AF412970, Mycoplasma anatis, Mycoplasmataceae 

U58504, Mycoplasma pullorum, Mycoplasmataceae 

AF221121, Mycoplasma elephantis, Mycoplasmataceae 

AF221120, Mycoplasma equigenitalium, Mycoplasmataceae 

AF125593, Mycoplasma indiense, Mycoplasmataceae 

AY796060, Mycoplasma orale, Mycoplasmataceae 

U26730, Mycoplasma hyosynoviae, Mycoplasmataceae 

AF125590, Mycoplasma faucium, Mycoplasmataceae 

AF125588, Mycoplasma subdolum, Mycoplasmataceae 

AF125586, Mycoplasma buccale, Mycoplasmataceae 

AF125583, Mycoplasma salivarium, Mycoplasmataceae 

M24580, Mycoplasma arthritidis, Mycoplasmataceae 

AF125585, Mycoplasma equirhinis, Mycoplasmataceae 

AF304325, Mycoplasma phocidae, Mycoplasmataceae 

AF443616, Mycoplasma hominis, Mycoplasmataceae 

AF125581, Mycoplasma arginini, Mycoplasmataceae 

U15796, Mycoplasma gateae, Mycoplasmataceae 

U44769, Mycoplasma canadense, Mycoplasmataceae 

U44764, Mycoplasma alkalescens, Mycoplasmataceae 

U67944, Mycoplasma auris, Mycoplasmataceae 

AF304323, Mycoplasma phocicerebrale, Mycoplasmataceae 

FR682077, Mycoplasma neophronis, Mycoplasmataceae 

AF125587, Mycoplasma spumans, Mycoplasmataceae 

AF125591, Mycoplasma falconis, Mycoplasmataceae 

AF125584, Mycoplasma anseris, Mycoplasmataceae 

AF125592, Mycoplasma cloacale, Mycoplasmataceae 

AF125589, Mycoplasma gypis, Mycoplasmataceae 

U09786, Mycoplasma agassizii, Mycoplasmataceae 

U19768, Mycoplasma testudineum, Mycoplasmataceae 

AF125582, Mycoplasma pulmonis, Mycoplasmataceae 

AF412979, Mycoplasma dispar, Mycoplasmataceae 

U44771, Mycoplasma ovipneumoniae, Mycoplasmataceae 

X62699, Mycoplasma flocculare, Mycoplasmataceae 

AE017243, Mycoplasma hyopneumoniae, Mycoplasmataceae 

U44768, Mycoplasma bovoculi, Mycoplasmataceae 

U44770, Mycoplasma conjunctivae, Mycoplasmataceae 

AF412982, Mycoplasma hyorhinis, Mycoplasmataceae 

AF538681, Mycoplasma collis, Mycoplasmataceae 

AF412976, Mycoplasma cricetuli, Mycoplasmataceae 

M23944, Mycoplasma neurolyticum, Mycoplasmataceae 

AF412983, Mycoplasma lagogenitalium, Mycoplasmataceae 

AF538683, Mycoplasma molare, Mycoplasmataceae 

AY714305, Mycoplasma iguanae, Mycoplasmataceae 

AF412984, Mycoplasma moatsii, Mycoplasmataceae 

AF412988, Mycoplasma sualvi, Mycoplasmataceae 

M24480, Mycoplasma mobile, Mycoplasmataceae 

D78651, Ureaplasma felinum, Mycoplasmataceae 

D78649, Ureaplasma cati, Mycoplasmataceae 

D78648, Ureaplasma canigenitalium, Mycoplasmataceae 

D78650, Ureaplasma diversum, Mycoplasmataceae 

AF073456, Ureaplasma parvum, Mycoplasmataceae 

AF073450, Ureaplasma urealyticum , type sp., Mycoplasmataceae 

U62937, Ureaplasma gallorale, Mycoplasmataceae 

M24293, Mycoplasma iowae, Mycoplasmataceae 

M23939, Mycoplasma muris, Mycoplasmataceae 

L10839, Mycoplasma penetrans, Mycoplasmataceae 

AF212859, Mycoplasma microti, Mycoplasmataceae 

AY531655, Mycoplasma amphoriforme, Mycoplasmataceae 

U09788, Mycoplasma testudinis, Mycoplasmataceae 

M23940, Mycoplasma pirum, Mycoplasmataceae 

U44765, Mycoplasma alvi, Mycoplasmataceae 

L24103, Mycoplasma imitans, Mycoplasmataceae 

X77334, Mycoplasma genitalium, Mycoplasmataceae 

AF132740, Mycoplasma pneumoniae, Mycoplasmataceae 

AF125879, Mycoplasma cavipharyngis, Mycoplasmataceae 

AF125878, Mycoplasma fastidiosum, Mycoplasmataceae 

DQ860100, Spiroplasma lineolae, Spiroplasmataceae 

FR733693, Spiroplasma tabanidicola, Spiroplasmataceae 

M24475, Spiroplasma gladiatoris, Spiroplasmataceae 

AY189132, Spiroplasma helicoides, Spiroplasmataceae 

AY189126, Spiroplasma chinense, Spiroplasmataceae 

AY189311, Spiroplasma velocicrescens, Spiroplasmataceae 

AY189129, Spiroplasma culicicola, Spiroplasmataceae 

AY189307, Spiroplasma montanense, Spiroplasmataceae 

GU993267, Spiroplasma apis, Spiroplasmataceae 

FR733690, Spiroplasma clarkii, Spiroplasmataceae 

AY189306, Spiroplasma litorale, Spiroplasmataceae 

AY189310, Spiroplasma turonicum, Spiroplasmataceae 

AY189128, Spiroplasma corruscae, Spiroplasmataceae 

AY345990, Entomoplasma melaleucae, Entomoplasmataceae 

FR733691, Spiroplasma diabroticae, Spiroplasmataceae 

AY189131, Spiroplasma floricola, Spiroplasmataceae 

GU585673, Spiroplasma monobiae, Spiroplasmataceae 

DQ861914, Spiroplasma cantharicola, Spiroplasmataceae 

AY189130, Spiroplasma diminutum, Spiroplasmataceae 

HM037992, Spiroplasma taiwanense, Spiroplasmataceae 

AY189134, Spiroplasma lampyridicola, Spiroplasmataceae 

AY189305, Spiroplasma leptinotarsae, Spiroplasmataceae 

AY189125, Spiroplasma alleghenense, Spiroplasmataceae 

AY189308, Spiroplasma sabaudiense, Spiroplasmataceae 

U26046, Mycoplasma capricolum subsp. capricolum, Mycoplasmataceae 

U26054, Mycoplasma leachii, Mycoplasmataceae 

M94728, Mycoplasma capricolum subsp. capripneumoniae, Mycoplasmataceae 

BX293980, Mycoplasma mycoides subsp. mycoides, type sp., Mycoplasmataceae 

U26037, Mycoplasma mycoides subsp. capri, Mycoplasmataceae 

U67945, Mycoplasma cottewii, Mycoplasmataceae 

U67946, Mycoplasma yeatsii, Mycoplasmataceae

U26055, Mycoplasma putrefaciens, Mycoplasmataceae 

AF305693, Mesoplasma entomophilum, Entomoplasmataceae 

AY174170, Mesoplasma grammopterae, Entomoplasmataceae 

AF300327, Mesoplasma florum, type sp., Entomoplasmataceae 

AY187288, Mesoplasma tabanidae, Entomoplasmataceae 

DQ514605, Mesoplasma coleopterae, Entomoplasmataceae 

AY166704, Mesoplasma chauliocola, Entomoplasmataceae 

AY168929, Mesoplasma corruscae, Entomoplasmataceae 

AY351331, Mesoplasma seiffertii, Entomoplasmataceae 

AY231458, Mesoplasma syrphidae, Entomoplasmataceae 

AY177627, Mesoplasma photuris, Entomoplasmataceae 

AF036954, Entomoplasma freundtii, Entomoplasmataceae 

AY157871, Entomoplasma somnilux, Entomoplasmataceae 

AF547212, Entomoplasma lucivorax, Entomoplasmataceae 

AY155670, Entomoplasma luminosum, Entomoplasmataceae 

AF303132, Mesoplasma lactucae, Entomoplasmataceae 

Spiroplasmataceae (10) 

X63781, Spiroplasma citri, type sp., Spiroplasmataceae 

AY325304, Spiroplasma melliferum, Spiroplasmataceae 

GU562447, Spiroplasma kunkelii, Spiroplasmataceae 

AY772395, Spiroplasma phoeniceum, Spiroplasmataceae 

AY189133, Spiroplasma insolitum, Spiroplasmataceae 

AY771927, Spiroplasma penaei, Spiroplasmataceae 

M24483, Spiroplasma poulsonii, Spiroplasmataceae 

DQ917753, Spiroplasma eriocheiris, Spiroplasmataceae 

AY189127, Spiroplasma chrysopicola, Spiroplasmataceae 

AY189309, Spiroplasma syrphidicola, Spiroplasmataceae 

GU585671, Spiroplasma ixodetis, Spiroplasmataceae 

GU993266, Spiroplasma platyhelix, Spiroplasmataceae 

Acholeplasmataceae (15) 

U14905, Acholeplasma laidlawii, type sp., Acholeplasmataceae 

AY257485, Acholeplasma pleciae, Acholeplasmataceae 

AY538166, Acholeplasma granularum, Acholeplasmataceae 

U14904, Acholeplasma oculi, Acholeplasmataceae 

AY538165, Acholeplasma equifetale, Acholeplasmataceae 

AY538167, Acholeplasma hippikon, Acholeplasmataceae 

AY538164, Acholeplasma cavigenitalium, Acholeplasmataceae 

M23933, Acholeplasma modicum, Acholeplasmataceae 

AF412968, Acholeplasma axanthum, Acholeplasmataceae 

L33734, Acholeplasma palmae, Acholeplasmataceae 

AY538170, Acholeplasma parvum, Acholeplasmataceae 

U16758, Mycoplasma feliminutum, Mycoplasmataceae 

AY538168, Acholeplasma morum, Acholeplasmataceae 

AF031479, Acholeplasma vituli, Acholeplasmataceae 

AY538163, Acholeplasma brassicae, Acholeplasmataceae 

Anaeroplasmataceae (3) 

M25049, Anaeroplasma bactoclasticum, Anaeroplasmataceae 

M23934, Anaeroplasma varium, Anaeroplasmataceae 

M25050, Anaeroplasma abactoclasticum, type sp., Anaeroplasmataceae 

AJ417075, Allobaculum stercoricanis, type sp., Erysipelotrichaceae 

M59230, Eubacterium biforme, Eubacteriaceae 

L34617, Eubacterium cylindroides, Eubacteriaceae 

M23730, Streptococcus pleomorphus, Streptococcaceae 

M23732, Clostridium innocuum, Clostridiaceae 

L34683, Eubacterium tortuosum, Eubacteriaceae 

L34682, Eubacterium dolichum, Eubacteriaceae 

AF220064, Bulleidia extructa, type sp., Erysipelotrichaceae 

AB031056, Solobacterium moorei, type sp., Erysipelotrichaceae 

GU585668, Anaerorhabdus furcosa, type sp., Bacteroidaceae 

Y11466, Holdemania filiformis, type sp., Erysipelotrichaceae 

AB034200, Erysipelothrix rhusiopathiae, type sp., Erysipelotrichaceae 

AB055906, Erysipelothrix tonsillarum, Erysipelotrichaceae 

AJ550617, Erysipelothrix inopinata, Erysipelotrichaceae 

AJ621549, Eggerthia catenaformis, type sp., Erysipelotrichaceae 

AB210824, Sharpea azabuensis, type sp., Lactobacillaceae 

AB210825, Kandleria vitulina, type sp., Erysipelotrichaceae 

AB030224, Catenibacterium mitsuokai, type sp., Erysipelotrichaceae 

AB030219, Coprobacillus cateniformis, type sp., Erysipelotrichaceae 

Y18188, Clostridium cocleatum, Clostridiaceae 

X75908, Clostridium spiroforme, Clostridiaceae 

DQ100445, Clostridium saccharogumia, Clostridiaceae 

X73440, Clostridium ramosum, Clostridiaceae 

M22351, Asteroleplasma anaerobium, type sp., Anaeroplasmataceae 

AF349724, Turicibacter sanguinis, type sp., Erysipelotrichaceae 

EF999972, Haloplasma contractile, type sp., Haloplasmataceae 

Incertae Sedis XI (7) 

Y13365, Gemella bergeri, Unclassified Bacillales 

AJ251987, Gemella cuniculi, Unclassified Bacillales 

Y17280, Gemella palaticanis, Unclassified Bacillales 

EU427463, Gemella asaccharolytica, Unclassified Bacillales 

L14327, Gemella morbillorum, Unclassified Bacillales 

L14326, Gemella haemolysans, type sp., Unclassified Bacillales 

Y13364, Gemella sanguinis, Unclassified Bacillales 

Staphylococcaceae (87) 

AB009938, Staphylococcus delphini, Staphylococcaceae 

D83369, Staphylococcus intermedius, Staphylococcaceae 

AJ780976, Staphylococcus pseudintermedius, Staphylococcaceae 

S83568, Staphylococcus schleiferi subsp. schleiferi, Staphylococcaceae 

AB009945, Staphylococcus schleiferi subsp. coagulans, Staphylococcaceae 

HM484980, Staphylococcus agnetis, Staphylococcaceae 

D83368, Staphylococcus hyicus, Staphylococcaceae 

D83360, Staphylococcus chromogenes, Staphylococcaceae 

D83364, Staphylococcus felis, Staphylococcaceae 

X84731, Staphylococcus lutrae, Staphylococcaceae 

EU888120, Staphylococcus microti , Staphylococcaceae 

FM242137, Staphylococcus rostri, Staphylococcaceae 

FR733703, Staphylococcus muscae, Staphylococcaceae 

Y15750, Staphylococcus condimenti, Staphylococcaceae 

Y15754, Staphylococcus piscifermentans, Staphylococcaceae 

AB233329, Staphylococcus carnosus subsp. utilis, Staphylococcaceae 

D83373, Staphylococcus simulans, Staphylococcaceae 

AB009934, Staphylococcus carnosus subsp. carnosus, Staphylococcaceae 

D83358, Staphylococcus auricularis, Staphylococcaceae 

AP008934, Staphylococcus saprophyticus subsp. saprophyticus, Staphylococcaceae 

AB233327, Staphylococcus saprophyticus subsp. bovis, Staphylococcaceae 

D83374, Staphylococcus xylosus, Staphylococcaceae 

AB009933, Staphylococcus arlettae, Staphylococcaceae

D83366, Staphylococcus gallinarum, Staphylococcaceae 

AF527483, Staphylococcus equorum subsp. linens, Staphylococcaceae 

AB009939, Staphylococcus equorum subsp. equorum, Staphylococcaceae 

AF004220, Staphylococcus succinus subsp. succinus, Staphylococcaceae 

AJ320272, Staphylococcus succinus subsp. casei, Staphylococcaceae 

AB009940, Staphylococcus kloosii, Staphylococcaceae 

AB009936, Staphylococcus cohnii subsp. urealyticus, Staphylococcaceae 

D83361, Staphylococcus cohnii subsp. cohnii, Staphylococcaceae 

AJ517414, Staphylococcus nepalensis, Staphylococcaceae 

EU707796, Staphylococcus massiliensis, Staphylococcaceae 

AF322002, Staphylococcus pettenkoferi, Staphylococcaceae 

L37599, Staphylococcus capitis subsp. capitis, Staphylococcaceae 

AB009935, Staphylococcus caprae, Staphylococcaceae 

AB009937, Staphylococcus capitis subsp. urealyticus, Staphylococcaceae 

D83363, Staphylococcus epidermidis, Staphylococcaceae 

L37602, Staphylococcus saccharolyticus, Staphylococcaceae 

L36472, Staphylococcus aureus subsp. aureus, type sp., Staphylococcaceae 

AY727530, Staphylococcus simiae, Staphylococcaceae 

D83355, Staphylococcus aureus subsp. anaerobius, Staphylococcaceae 

AB009944, Staphylococcus pasteuri, Staphylococcaceae 

L37603, Staphylococcus warneri, Staphylococcaceae 

FJ389206, Staphylococcus devriesei, Staphylococcaceae 

AB233326, Staphylococcus hominis subsp. novobiosepticus, Staphylococcaceae 

X66101, Staphylococcus hominis subsp. hominis, Staphylococcaceae 

X66100, Staphylococcus haemolyticus, Staphylococcaceae 

AB009941, Staphylococcus lugdunensis, Staphylococcaceae 

AB233332, Staphylococcus sciuri subsp. rodentium, Staphylococcaceae 

AB233331, Staphylococcus sciuri subsp. carnaticus, Staphylococcaceae 

AJ421446, Staphylococcus sciuri subsp. sciuri, Staphylococcaceae 

AB233330, Staphylococcus fleurettii, Staphylococcaceae 

AB009946, Staphylococcus vitulinus, Staphylococcaceae 

D83370, Staphylococcus lentus, Staphylococcaceae 

GQ222244, Staphylococcus stepanovicii, Staphylococcaceae 

Y15714, Macrococcus bovicus, Staphylococcaceae 

AY119687, Macrococcus lamae, Staphylococcaceae 

AY119686, Macrococcus brunensis, Staphylococcaceae 

Y15713, Macrococcus carouselicus, Staphylococcaceae 

Y15712, Macrococcus equipercicus, type sp., Staphylococcaceae 

AY119685, Macrococcus hajekii, Staphylococcaceae 

D83359, Macrococcus caseolyticus, Staphylococcaceae 

GU295938, Jeotgalicoccus coquinae, Staphylococcaceae 

AY028926, Jeotgalicoccus psychrophilus, Staphylococcaceae 

GU295939, Jeotgalicoccus aerolatus, Staphylococcaceae 

FJ386517, Jeotgalicoccus halophilus, Staphylococcaceae 

AY028925, Jeotgalicoccus halotolerans, type sp., Staphylococcaceae 

FJ237390, Jeotgalicoccus nanhaiensis, Staphylococcaceae 

FJ158840, Jeotgalicoccus huakuii, Staphylococcaceae 

EU583727, Jeotgalicoccus marinus, Staphylococcaceae 

AJ251530, Jeotgalicoccus pinnipedialis, Staphylococcaceae 

EU240886, Nosocomiicoccus ampullae, type sp., Staphylococcaceae 

DQ837380, Salinicoccus kunmingensis, Staphylococcaceae 

FJ436724, Salinicoccus qingdaonensis, Staphylococcaceae 

EF177692, Salinicoccus albus, Staphylococcaceae 

AF275710, Salinicoccus alkaliphilus, Staphylococcaceae 

DQ471329, Salinicoccus jeotgali, Staphylococcaceae 

DQ333949, Salinicoccus salsiraiae, Staphylococcaceae 

AB258358, Salinicoccus siamensis, Staphylococcaceae 

DQ989633, Salinicoccus halodurans, Staphylococcaceae 

FJ182049, Salinicoccus carnicancri , Staphylococcaceae 

AY028927, Salinicoccus hispanicus, Staphylococcaceae 

FR669114, Salinicoccus sesuvii, Staphylococcaceae 

DQ352839, Salinicoccus luteus, Staphylococcaceae 

DQ767692, Salinicoccus iranensis, Staphylococcaceae 

X94559, Salinicoccus roseus, type sp., Staphylococcaceae 

Paenibacillaceae 2 (25) 

AB271756, Brevibacillus brevis, type sp., Paenibacillaceae 

AB112712, Brevibacillus formosus, Paenibacillaceae 

AB112716, Brevibacillus agri, Paenibacillaceae 

D78458, Brevibacillus centrosporus, Paenibacillaceae 

AB112713, Brevibacillus choshinensis, Paenibacillaceae 

AB112715, Brevibacillus reuszeri, Paenibacillaceae 

AB112714, Brevibacillus parabrevis, Paenibacillaceae 

AB112717, Brevibacillus limnophilus, Paenibacillaceae 

AF378232, Brevibacillus invocatus, Paenibacillaceae 

EU383033, Brevibacillus panacihumi, Paenibacillaceae 

D16271, Brevibacillus laterosporus, Paenibacillaceae 

EU375457, Brevibacillus fluminis, Paenibacillaceae 

AB112721, Brevibacillus borstelensis, Paenibacillaceae 

AB245376, Brevibacillus ginsengisoli, Paenibacillaceae 

AJ715378, Brevibacillus levickii, Paenibacillaceae 

HQ419073, Brevibacillus aydinogluensis, Paenibacillaceae 

Z26921, Brevibacillus thermoruber, Paenibacillaceae 

X94194, Aneurinibacillus aneurinilyticus, type sp., Paenibacillaceae 

X94195, Aneurinibacillus migulanus, Paenibacillaceae 

AB112725, Aneurinibacillus danicus, Paenibacillaceae 

AJ715385, Aneurinibacillus terranovensis, Paenibacillaceae 

X94196, Aneurinibacillus thermoaerophilus, Paenibacillaceae 

Y14578, Ammoniphilus oxalaticus, type sp., Paenibacillaceae 

Y14580, Ammoniphilus oxalivorans, Paenibacillaceae 

Y14581, Oxalophagus oxalicus, type sp., Paenibacillaceae 

Incertae Sedis XII (13) 

DQ019166, Exiguobacterium aurantiacum, type sp., Unclassified Bacillales 

AM072764, Exiguobacterium mexicanum, Unclassified Bacillales 

AY594264, Exiguobacterium aestuarii, Unclassified Bacillales 

AY818050, Exiguobacterium profundum, Unclassified Bacillales 

AY594266, Exiguobacterium marinum, Unclassified Bacillales 

CP001022, Exiguobacterium sibiricum, Unclassified Bacillales 

DQ019165, Exiguobacterium undae, Unclassified Bacillales 

AM072763, Exiguobacterium artemiae, Unclassified Bacillales 

AB105164, Exiguobacterium oxidotolerans, Unclassified Bacillales 

DQ019164, Exiguobacterium antarcticum, Unclassified Bacillales 

AY864633, Exiguobacterium soli, Unclassified Bacillales 

DQ019167, Exiguobacterium acetylicum, Unclassified Bacillales 

AJ846291, Exiguobacterium indicum, Unclassified Bacillales 

Listeriaceae (11) 

X98529, Listeria ivanovii subsp. londoniensis, Listeriaceae 

X98528, Listeria ivanovii subsp. ivanovii, Listeriaceae 

DQ065845, Listeria seeligeri, Listeriaceae 

X56153, Listeria monocytogenes, type sp., Listeriaceae 

X98527, Listeria innocua, Listeriaceae

DQ065846, Listeria welshimeri, Listeriaceae 

EU545982, Listeria marthii, Listeriaceae 

FJ557241, Listeria rocourtiae, Listeriaceae 

X56156, Brochothrix campestris, Listeriaceae 

AY543023, Brochothrix thermosphacta, type sp., Listeriaceae 

X98526, Listeria grayi, Listeriaceae 

AY667496, Bacillus koreensis, Bacillaceae 

AJ010478, Anoxybacillus pushchinoensis, type sp., Bacillaceae 

FJ438370, Anoxybacillus tengchongensis, Bacillaceae 

GQ153549, Anoxybacillus eryuanensis, Bacillaceae 

HM016869, Anoxybacillus flavithermus subsp. yunnanensis, Bacillaceae 

EF654664, Anoxybacillus mongoliensis, Bacillaceae 

Z26932, Anoxybacillus flavithermus subsp. flavithermus, Bacillaceae 

AM409184, Anoxybacillus bogrovensis, Bacillaceae 

AY122325, Anoxybacillus gonensis, Bacillaceae 

AY248711, Anoxybacillus kestanbolensis, Bacillaceae 

AF001963, Anoxybacillus ayderensis, Bacillaceae 

AF510985, Anoxybacillus kamchatkensis, Bacillaceae 

EU326496, Anoxybacillus salavatliensis, Bacillaceae 

AJ551330, Anoxybacillus contaminans, Bacillaceae 

AB110008, Anoxybacillus voinovskiensis, Bacillaceae 

AJ618979, Anoxybacillus amylolyticus, Bacillaceae 

AJ879076, Anoxybacillus rupiensis, Bacillaceae 

FN428691, Anoxybacillus tepidamans, Bacillaceae 

FN428698, Anoxybacillus caldiproteolyticus, Bacillaceae 

FR749979, Geobacillus gargensis, Bacillaceae 

AY608935, Geobacillus thermocatenulatus, Bacillaceae 

AY044055, Geobacillus lituanicus, Bacillaceae 

AY312404, Geobacillus jurassicus, Bacillaceae 

AF276304, Geobacillus uzenensis, Bacillaceae 

AB021196, Geobacillus stearothermophilus, type sp., Bacillaceae 

X60618, Geobacillus kaustophilus, Bacillaceae 

Z26923, Geobacillus thermoleovorans, Bacillaceae 

AJ293805, Geobacillus vulcani, Bacillaceae 

AF276306, Geobacillus subterraneus, Bacillaceae 

EU477773, Geobacillus thermodenitrificans subsp. calidus, Bacillaceae 

AY608961, Geobacillus thermodenitrificans subsp. thermodenitrificans, Bacillaceae 

FN428699, Caldibacillus debilis, type sp., Bacillaceae 

FR749957, Geobacillus thermantarcticus, Bacillaceae 

AY608981, Geobacillus thermoglucosidasius, Bacillaceae 

AF326278, Geobacillus toebii, Bacillaceae 

L09227, Saccharococcus thermophilus, type sp., Bacillaceae 

AY605232, Bacillus alveayuensis, Bacillaceae 

Z26930, Aeribacillus pallidus, type sp., Bacillaceae 

AY397764, Bacillus thermolactis, Bacillaceae 

L27478, Bacillus thermoamylovorans, Bacillaceae 

U20385, Bacillus infernus, Bacillaceae 

AB112727, Bacillus methanolicus, Bacillaceae 

AJ504797, Bacillus aeolius, Bacillaceae 

Z26935, Bacillus smithii, Bacillaceae 

AY443039, Bacillus fordii, Bacillaceae 

AY443038, Bacillus fortis, Bacillaceae 

AY443036, Bacillus farraginis, Bacillaceae 

AJ535638, Bacillus galactosidilyticus, Bacillaceae 

AJ535639, Bacillus ruris, Bacillaceae 

GU322908, Bacillus graminis, Bacillaceae 

AB021189, Bacillus lentus, Bacillaceae 

X77790, Bacillus badius, Bacillaceae 

DQ870688, Bacillus canaveralius, Bacillaceae 

Planococcaceae (75) 

AJ314745, Planococcus antarcticus, Planococcaceae 

X62173, Planococcus kocurii, Planococcaceae 

EF079063, Planococcus donghaensis, Planococcaceae 

JF742665, Planococcus halocryophilus, Planococcaceae 

AY437845, Planomicrobium stackebrandtii, Planococcaceae 

D55729, Planomicrobium okeanokoites, Planococcaceae 

AF041791, Planomicrobium mcmeekinii, Planococcaceae 

FJ265708, Planomicrobium flavidum, Planococcaceae 

EU036220, Planomicrobium glaciei, Planococcaceae 

AF029364, Planomicrobium alkanoclasticum, Planococcaceae 

FJ765415, Planococcus salinarum, Planococcaceae 

AJ314746, Planomicrobium psychrophilum, Planococcaceae 

AF144750, Planomicrobium koreense, type sp., Planococcaceae 

AJ697862, Planomicrobium chinense, Planococcaceae 

AF500007, Planococcus maritimus, Planococcaceae 

JF775504, Planococcus plakortidis, Planococcaceae 

X62172, Planococcus citreus, type sp., Planococcaceae 

AJ493659, Planococcus rifietoensis, Planococcaceae 

AJ966515, Planococcus columbae, Planococcaceae 

AJ544622, Planococcus maitriensis, Planococcaceae 

X68415, Sporosarcina globispora, Planococcaceae 

D16277, Sporosarcina psychrophila, Planococcaceae 

AJ292316, Filibacter limicola, type sp., Planococcaceae 

DQ073394, Sporosarcina soli, Planococcaceae 

HQ676600, Sporosarcina pasteurii, Planococcaceae 

FN298444, Sporosarcina contaminans, Planococcaceae 

DQ073393, Sporosarcina koreensis, Planococcaceae 

AB473560, Sporosarcina luteola, Planococcaceae 

GU994085, Sporosarcina newyorkensis, Planococcaceae 

AF202057, Sporosarcina ureae, type sp., Planococcaceae 

AF202056, Sporosarcina aquimarina, Planococcaceae 

AB243859, Sporosarcina saromensis, Planococcaceae 

EF371374, Bacillus beijingensis, Bacillaceae 

AM286423, Bhargavaea cecembensis, type sp., Planococcaceae 

EF371375, Bacillus ginsengi, Bacillaceae 

GU937385, Chungangia koreensis, type sp., Unclassified Bacillales 

AB199591, Lysinibacillus boronitolerans, type sp., Bacillaceae 

AJ628749, Lysinibacillus macroides, Bacillaceae 

FJ477040, Lysinibacillus xylanilyticus, Bacillaceae 

AJ310083, Lysinibacillus fusiformis, Bacillaceae 

AJ310084, Lysinibacillus sphaericus, Bacillaceae 

FM178866, Acetobacter pasteurianus subsp. ascendens, Acetobacteraceae 

AB300598, Lysinibacillus parviboronicapiens, Bacillaceae 

X70314, Caryophanon latum, type sp., Planococcaceae 

X70315, Caryophanon tenue, Planococcaceae 

AM773821, Bacillus cecembensis, Bacillaceae 

AJ006086, Solibacillus silvestris, type sp., Unclassified Bacillales 

AF526913, Bacillus odysseyi, Bacillaceae 

DQ348071, Ureibacillus composti, Planococcaceae 

DQ348072, Ureibacillus thermophilus, Planococcaceae 

AY850379, Ureibacillus suwonensis, Planococcaceae 

AJ276403, Ureibacillus terrenus, Planococcaceae

AB101594, Ureibacillus thermosphaericus, type sp., Planococcaceae 

AY677116, Bacillus massiliensis, Bacillaceae 

DQ465405, Bacillus decisifrondis, Bacillaceae 

AJ277983, Psychrobacillus psychrotolerans, Bacillaceae 

AJ277984, Psychrobacillus psychrodurans, Bacillaceae 

AM980508, Psychrobacillus insolitus, type sp., Bacillaceae 

GQ927308, Chryseomicrobium imtechense, type sp., Planococcaceae 

AB271738, Kurthia gibsonii, Planococcaceae 

AB271740, Kurthia zopfii, type sp., Planococcaceae 

AJ605774, Kurthia sibirica, Planococcaceae 

AJ627212, Viridibacillus arenosi, Bacillaceae 

AJ627211, Viridibacillus arvi, type sp., Bacillaceae 

AF169520, Viridibacillus neidei, Bacillaceae 

AB271739, Rummeliibacillus pycnus, Unclassified Bacillales 

DQ870754, Rummeliibacillus stabekisii, type sp., Unclassified Bacillales 

AJ514408, Paenisporosarcina macmurdoensis, Planococcaceae 

EF154512, Sporosarcina antarctica, Planococcaceae 

DQ333897, Paenisporosarcina quisquiliarum, type sp., Planococcaceae 

AY190535, Jeotgalibacillus campisalis, Planococcaceae 

AJ237708, Jeotgalibacillus marinus, Planococcaceae 

FR693626, Jeotgalibacillus soli, Planococcaceae 

AF281158, Jeotgalibacillus alimentarius, type sp., Planococcaceae 

EU874389, Jeotgalibacillus salarius, Planococcaceae 

AB021192, Bacillus mycoides, Bacillaceae 

AB021199, Bacillus weihenstephanensis, Bacillaceae 

D16281, Bacillus thuringiensis, Bacillaceae 

AE016877, Bacillus cereus, Bacillaceae 

AB190217, Bacillus anthracis, Bacillaceae 

AF013121, Bacillus pseudomycoides, Bacillaceae 

AF483625, Bacillus aquimaris, Bacillaceae 

AB099708, Bacillus vietnamensis, Bacillaceae 

AF483624, Bacillus marisflavi, Bacillaceae 

AY667495, Bacillus seohaeanensis, Bacillaceae 

EF014452, Bacillus coahuilensis, Bacillaceae 

EU861362, Bacillus horneckiae, Bacillaceae 

FN995265, Bacillus kochii, Bacillaceae 

FR666703, Bacillus purgationiresistans, Bacillaceae 

X76447, Bacillus halmapalus, Bacillaceae 

AB043865, Bacillus horikoshii, Bacillaceae 

X76437, Bacillus cohnii, Bacillaceae 

DQ374637, Bacillus acidiceler, Bacillaceae 

AJ419629, Bacillus luciferensis, Bacillaceae 

GU434676, Bacillus endoradicis, Bacillaceae 

AB021185, Bacillus flexus, Bacillaceae 

D16273, Bacillus megaterium, Bacillaceae 

AB049195, Bacillus funiculus, Bacillaceae 

AB245380, Bacillus panaciterrae, Bacillaceae 

AB363732, Bacillus azotoformans, Bacillaceae 

AJ316309, Bacillus muralis, Bacillaceae 

AM747813, Brevibacterium frigoritolerans, Brevibacteriaceae 

AJ439078, Bacillus simplex, Bacillaceae 

EF206294, Bacillus butanolivorans, Bacillaceae 

AB021195, Bacillus psychrosaccharolyticus, Bacillaceae 

AB109209, Bacillus asahii, Bacillaceae 

AJ542512, Bacillus novalis, Bacillaceae 

AJ542509, Bacillus vireti, Bacillaceae 

AJ542506, Bacillus drentensis, Bacillaceae 

AJ542508, Bacillus bataviensis, Bacillaceae 

AJ542513, Bacillus soli, Bacillaceae 

AJ250056, Bacillus fumarioli, Bacillaceae 

AB021194, Bacillus niacini, Bacillaceae 

AB245377, Bacillus pocheonensis, Bacillaceae 

X60615, Bacillus fastidiosus, Bacillaceae 

AY608605, Bacillus litoralis, Bacillaceae 

AY998119, Bacillus niabensis, Bacillaceae 

AJ583158, Bacillus indicus, Bacillaceae 

AY550276, Bacillus cibi, Bacillaceae 

AY904033, Bacillus idriensis, Bacillaceae 

AJ781029, Bacillus herbersteinensis, Bacillaceae 

FM162181, Bacillus galliciensis, Bacillaceae 

GQ925365, Bacillus luteolus, Bacillaceae 

AJ627210, Bacillus humi, Bacillaceae 

AY829448, Bacillus alkalitelluris, Bacillaceae 

AB198719, Bacillus boroniphilus, Bacillaceae 

AB262082, Bacillus selenatarsenatis, Bacillaceae 

AF221061, Bacillus jeotgali, Bacillaceae 

FR733689, Bacillus subterraneus, Bacillaceae 

DQ371431, Bacillus thioparans, Bacillaceae 

AJ717382, Bacillus foraminis, Bacillaceae 

AY043084, Bacillus circulans, Bacillaceae 

EU656111, Bacillus nealsonii, Bacillaceae 

EU603328, Bacillus korlensis, Bacillaceae 

AF071856, Bacillus siralis, Bacillaceae 

X60611, Bacillus benzoevorans, Bacillaceae 

D16268, Bacillus firmus, Bacillaceae 

AY904032, Bacillus infantis, Bacillaceae 

GQ292772, Bacillus oceanisediminis, Bacillaceae 

EU364818, Falsibacillus pallidus, type sp., Bacillaceae 

DQ280367, Bacillus kribbensis, Bacillaceae 

Bacillaceae 1 (21) 

AB255669, Bacillus amyloliquefaciens, Bacillaceae 

GQ281299, Bacillus siamensis, Bacillaceae 

EU194897, Bacillus methylotrophicus, Bacillaceae 

AJ276351, Bacillus subtilis subsp. subtilis, type sp., Bacillaceae 

EU138467, Bacillus subtilis subsp. inaquosorum, Bacillaceae 

AB021191, Bacillus mojavensis, Bacillaceae 

AM747812, Brevibacterium halotolerans, Brevibacteriaceae 

AF074970, Bacillus subtilis subsp. spizizenii, Bacillaceae 

HQ223107, Bacillus tequilensis, Bacillaceae 

AB021198, Bacillus vallismortis, Bacillaceae 

AJ831844, Bacillus aerophilus, Bacillaceae 

AJ831841, Bacillus stratosphericus, Bacillaceae 

AJ831842, Bacillus altitudinis, Bacillaceae 

AY876289, Bacillus pumilus, Bacillaceae 

AF234854, Bacillus safensis, Bacillaceae 

AB021181, Bacillus atrophaeus, Bacillaceae 

CP000560, Bacillus amyloliquefaciens subsp. plantarum, Bacillaceae 

FN597644, Bacillus amyloliquefaciens subsp. amyloliquefaciens, Bacillaceae 

AJ831843, Bacillus aerius, Bacillaceae 

CP000002, Bacillus licheniformis , Bacillaceae 

AF302118, Bacillus sonorensis, Bacillaceae 

AB021182, Bacillus carboniphilus, Bacillaceae

AF295302, Bacillus endophyticus, Bacillaceae 

FJ514932, Bacillus chungangensis, Bacillaceae 

AM503357, Bacillus isabeliae, Bacillaceae 

AB271752, Bacillus coagulans, Bacillaceae 

EF379274, Bacillus acidiproducens, Bacillaceae 

AY988598, Bacillus oleronius, Bacillaceae 

U49078, Bacillus sporothermodurans, Bacillaceae 

AF547209, Bacillus acidicola, Bacillaceae 

AB245378, Bacillus ginsengihumi, Bacillaceae 

AJ250318, Bacillus shackletonii, Bacillaceae 

AY793550, Bacillus lehensis, Bacillaceae 

AB188090, Bacillus oshimensis, Bacillaceae 

AY258614, Bacillus patagoniensis, Bacillaceae 

HM054474, Bacillus xiaoxiensis, Bacillaceae 

X76440, Bacillus clausii, Bacillaceae 

X76446, Bacillus gibsonii, Bacillaceae 

AJ880003, Bacillus plakortidis, Bacillaceae 

AJ316316, Bacillus murimartini, Bacillaceae 

X76449, Bacillus pseudalcaliphilus, Bacillaceae 

AB434284, Bacillus trypoxylicola, Bacillaceae 

X76436, Bacillus alcalophilus, Bacillaceae 

AY376312, Bacillus bogoriensis, Bacillaceae 

AB043858, Bacillus akibai, Bacillaceae 

AJ606037, Bacillus alkalisediminis, Bacillaceae 

AB086897, Bacillus krulwichiae, Bacillaceae 

DQ026060, Bacillus okhensis, Bacillaceae 

AB043851, Bacillus wakoensis, Bacillaceae 

AB043846, Bacillus hemicellulosilyticus, Bacillaceae 

GQ292773, Bacillus nanhaiisediminis, Bacillaceae 

DQ675454, Anaerobacillus alkalilacustris, Bacillaceae 

AY032601, Bacillus macyae, Bacillaceae 

AF064705, Anaerobacillus arseniciselenatis, type sp., Bacillaceae 

EU143680, Anaerobacillus alkalidiazotrophicus, Bacillaceae 

EF422411, Bacillus alkalinitrilicus, Bacillaceae 

X76439, Bacillus pseudofirmus, Bacillaceae 

EU621902, Bacillus marmarensis, Bacillaceae 

AJ302709, Bacillus halodurans, Bacillaceae 

AB047684, Bacillus okuhidensis, Bacillaceae 

Sporolactobacillaceae (8) 

AB101595, Sporolactobacillus inulinus, type sp., Sporolactobacillaceae 

AJ634662, Sporolactobacillus terrae, Sporolactobacillaceae 

AB374522, Sporolactobacillus putidus, Sporolactobacillaceae 

EF581819, Sporolactobacillus vineae, Sporolactobacillaceae 

AJ698860, Sporolactobacillus nakayamae subsp. racemicus, Sporolactobacillaceae 

AJ634663, Sporolactobacillus nakayamae subsp. nakayamae, Sporolactobacillaceae 

D16270, Sporolactobacillus laevolacticus, Sporolactobacillaceae 

AB374517, Sporolactobacillus kofuensis, Sporolactobacillaceae 

AJ551329, Bacillus gelatini, Bacillaceae 

EU046268, Bacillus solisalsi, Bacillaceae 

AY373018, Bacillus macauensis, Bacillaceae 

EU939689, Bacillus rigui, Bacillaceae 

AJ422145, Bacillus barbaricus, Bacillaceae 

GU477780, Bacillus nanhaiensis, Bacillaceae 

AJ606700, Bacillus arsenicus, Bacillaceae 

AJ315075, Bacillus decolorationis, Bacillaceae 

JN187498, Bacillus berkeleyi, Bacillaceae 

AF541966, Bacillus hwajinpoensis, Bacillaceae 

HM460885, Bacillus hemicentroti, Bacillaceae 

AY228462, Bacillus algicola, Bacillaceae 

AY603978, Bacillus taeanensis, Bacillaceae 

Bacillaceae 2 (129) 

EF486356, Halobacillus campisalis, Bacillaceae 

EF612763, Halobacillus seohaensis, Bacillaceae 

AF500003, Halobacillus salinus, Bacillaceae 

FJ456889, Halobacillus salsuginis, Bacillaceae 

AM295006, Halobacillus alkaliphilus, Bacillaceae 

HE717023, Halobacillus halophilus, type sp., Bacillaceae 

X94558, Halobacillus litoralis, Bacillaceae 

AY881246, Halobacillus yeomjeoni, Bacillaceae 

AY190534, Halobacillus locisalis, Bacillaceae 

AB243865, Halobacillus faecis, Bacillaceae 

AJ310149, Halobacillus trueperi, Bacillaceae 

AY351389, Halobacillus aidingensis, Bacillaceae 

AB195680, Halobacillus kuroshimensis, Bacillaceae 

AB021188, Salimicrobium halophilum, Bacillaceae 

DQ227305, Salimicrobium luteum, Bacillaceae 

FJ357160, Salimicrobium flavidum, Bacillaceae 

FR714935, Salimicrobium salexigens, Bacillaceae 

X90834, Salimicrobium album, type sp., Bacillaceae 

AB189298, Halobacillus profundi, Bacillaceae 

AJ486874, Halobacillus karajensis, Bacillaceae 

AY351395, Halobacillus dabanensis, Bacillaceae 

DQ888316, Halobacillus mangrovi, Bacillaceae 

AY553296, Pontibacillus chungwhensis, type sp., Bacillaceae 

AY603977, Pontibacillus marinus, Bacillaceae 

EU583724, Pontibacillus litoralis , Bacillaceae 

EF533969, Pontibacillus yanchengensis, Bacillaceae 

EU583728, Pontibacillus halophilus, Bacillaceae 

AJ717299, Thalassobacillus devorans, type sp., Bacillaceae 

FM864226, Thalassobacillus cyri, Bacillaceae 

EU817571, Thalassobacillus hwangdonensis, Bacillaceae 

FN690978, Thalassobacillus pellis, Bacillaceae 

DQ989634, Sediminibacillus albus, Bacillaceae 

AM905297, Sediminibacillus halophilus, type sp., Bacillaceae 

AY616012, Virgibacillus koreensis, Bacillaceae 

AB196783, Halolactibacillus halophilus, type sp., Bacillaceae 

AB196784, Halolactibacillus miurensis, Bacillaceae 

EF554593, Halolactibacillus alkaliphilus, Bacillaceae 

FJ746578, Streptohalobacillus salinus, type sp., Bacillaceae 

AF418603, Amphibacillus fermentum, Bacillaceae 

EU135728, Paraliobacillus quinghaiensis, Bacillaceae 

AB243866, Amphibacillus sediminis, Bacillaceae 

FJ169626, Amphibacillus jilinensis, Bacillaceae 

EU143681, Natronobacillus azotifigens, type sp., Bacillaceae 

D82065, Amphibacillus xylanus, type sp., Bacillaceae 

AF418602, Amphibacillus tropicus, Bacillaceae 

AB087828, Paraliobacillus ryukyuensis, type sp., Bacillaceae 

DQ664540, Gracilibacillus lacisalsi, Bacillaceae 

FJ182214, Gracilibacillus thailandensis, Bacillaceae 

EU784646, Gracilibacillus saliphilus, Bacillaceae 

AM040716, Gracilibacillus orientalis, Bacillaceae 

AB197126, Gracilibacillus boraciitolerans, Bacillaceae

HQ439902, Gracilibacillus kekensis, Bacillaceae 

AF036922, Gracilibacillus halotolerans, type sp., Bacillaceae 

AB101591, Gracilibacillus dipsosauri, Bacillaceae 

EU709020, Gracilibacillus ureilyticus, Bacillaceae 

EU135704, Gracilibacillus halophilus, Bacillaceae 

EF520006, Gracilibacillus bigeumensis, Bacillaceae 

DQ359731, Alkalibacillus halophilus, Bacillaceae 

AY671976, Alkalibacillus salilacus, Bacillaceae 

EU874387, Alkalibacillus flavidus, Bacillaceae 

AB264528, Alkalibacillus silvisoli, Bacillaceae 

AJ493661, Alkalibacillus filiformis, Bacillaceae 

AJ238041, Alkalibacillus haloalkaliphilus, type sp., Bacillaceae 

AB194046, Piscibacillus salipiscarius, type sp., Bacillaceae 

FM864227, Piscibacillus halophilus, Bacillaceae 

AM911047, Aquisalibacillus elongatus, type sp., Bacillaceae 

AJ238042, Filobacillus milosensis, type sp., Bacillaceae 

AY319933, Tenuibacillus multivorans, type sp., Bacillaceae 

AB264529, Halalkalibacillus halophilus, type sp., Bacillaceae 

FJ347755, Allobacillus halotolerans, type sp., Bacillaceae 

AY321436, Salinibacillus aidingensis, type sp., Bacillaceae 

AY321434, Salinibacillus kushneri, Bacillaceae 

AM292417, Salirhabdus euzebyi, type sp., Bacillaceae 

DQ519571, Terribacillus goriensis, Bacillaceae 

AB243845, Terribacillus saccharophilus, type sp., Bacillaceae 

AB243849, Terribacillus halophilus, Bacillaceae 

FJ386524, Terribacillus aidingensis, Bacillaceae 

AY321433, Lentibacillus halodurans, Bacillaceae 

AY667493, Lentibacillus salarius, Bacillaceae 

EF601571, Lentibacillus salinarum, Bacillaceae 

AY057394, Lentibacillus salicampi, type sp., Bacillaceae 

FN376846, Lentibacillus persicus, Bacillaceae 

AB231905, Lentibacillus kapialis, Bacillaceae 

FJ182050, Lentibacillus jeotgali, Bacillaceae 

AB191345, Lentibacillus halophilus, Bacillaceae 

AB127980, Lentibacillus juripiscarius, Bacillaceae 

AY762976, Lentibacillus salis, Bacillaceae 

AY667497, Lentibacillus lacisalsi, Bacillaceae 

AY121439, Virgibacillus kekensis, Bacillaceae 

EF675742, Virgibacillus arcticus, Bacillaceae 

AJ316302, Virgibacillus carmonensis, Bacillaceae 

AJ315056, Virgibacillus necropolis, Bacillaceae 

FJ357159, Virgibacillus byunsanensis, Bacillaceae 

FM205010, Virgibacillus salinus, Bacillaceae 

FJ746573, Virgibacillus subterraneus, Bacillaceae 

AB365482, Virgibacillus siamensis, Bacillaceae 

AY543169, Virgibacillus halodenitrificans, Bacillaceae 

AY121430, Virgibacillus sediminis, Bacillaceae 

DQ664543, Virgibacillus xinjiangensis, Bacillaceae 

Y11603, Virgibacillus salexigens, Bacillaceae 

AJ009793, Virgibacillus marismortui, Bacillaceae 

AB197851, Virgibacillus salarius, Bacillaceae 

DQ139839, Virgibacillus olivae, Bacillaceae 

AB366005, Oceanobacillus kapialis, Bacillaceae 

AJ315060, Oceanobacillus picturae, Bacillaceae 

EF101168, Virgibacillus chiguensis, Bacillaceae 

AY822043, Virgibacillus dokdonensis, Bacillaceae 

D16275, Virgibacillus pantothenticus, type sp., Bacillaceae 

AJ012667, Virgibacillus proomii, Bacillaceae 

GU202420, Virgibacillus alimentarius, Bacillaceae 

GU586225, Virgibacillus campisalis, Bacillaceae 

AJ640134, Oceanobacillus oncorhynchi subsp. incaldanensis, Bacillaceae 

EU817570, Oceanobacillus locisalsi, Bacillaceae 

AB188089, Oceanobacillus oncorhynchi subsp. oncorhynchi, Bacillaceae 

EU709018, Oceanobacillus neutriphilus, Bacillaceae 

AB473561, Oceanobacillus sojae, Bacillaceae 

AB010863, Oceanobacillus iheyensis, type sp., Bacillaceae 

GU784860, Oceanobacillus kimchii, Bacillaceae 

DQ298074, Oceanobacillus chironomi, Bacillaceae 

DQ386635, Oceanobacillus profundus, Bacillaceae 

AB275883, Oceanobacillus caeni, Bacillaceae 

Z26939, Bacillus thermocloacae, Bacillaceae 

AM114102, Paucisalibacillus globulus, type sp., Bacillaceae 

Y13066, Ornithinibacillus bavariensis, type sp., Bacillaceae 

AF326365, Ornithinibacillus californiensis, Bacillaceae 

FN597064, Ornithinibacillus contaminans, Bacillaceae 

AB107894, Cerasibacillus quisquiliarum, type sp., Bacillaceae 

EU213011, Virgibacillus soli, Bacillaceae 

AB243851, Virgibacillus halophilus, Bacillaceae 

AB021193, Pullulanibacillus naganoensis, type sp., Sporolactobacillaceae 

AB231786, Tuberibacillus calidus, type sp., Sporolactobacillaceae 

DQ115802, Bacillus qingdaonensis, Bacillaceae 

AM982516, Bacillus halochares, Bacillaceae 

DQ504377, Bacillus aidingensis, Bacillaceae 

AY667494, Bacillus salarius, Bacillaceae 

HQ433452, Bacillus iranensis, Bacillaceae 

FM244839, Bacillus persepolensis, Bacillaceae 

AB449106, Geomicrobium halophilum, Unclassified Bacillales 

AB449109, Natribacillus halophilus, type sp., Bacillaceae 

EU581835, Salsuginibacillus halophilus, Bacillaceae 

AM492160, Salsuginibacillus kocurii, type sp., Bacillaceae 

AY817493, Marinococcus halotolerans, Bacillaceae 

FJ214659, Marinococcus luteus, Bacillaceae 

X90835, Marinococcus halophilus, type sp., Bacillaceae 

DQ168584, Sinobaca qinghaiensis, type sp., Sporolactobacillaceae 

FJ825145, Bacillus beveridgei, Bacillaceae 

AF064704, Bacillus selenitireducens, Bacillaceae 

EU925618, Bacillus neizhouensis, Bacillaceae 

X76445, Bacillus agaradhaerens, Bacillaceae 

AM492159, Bacillus chagannorensis, Bacillaceae 

GU583651, Bacillus daliensis, Bacillaceae 

AJ493660, Bacillus saliphilus, Bacillaceae 

FR714930, Bacillus locisalis, Bacillaceae 

AJ605773, Bacillus aurantiacus, Bacillaceae 

Z48306, Bacillus vedderi, Bacillaceae 

AB043852, Bacillus cellulosilyticus, Bacillaceae 

X76444, Bacillus clarkii, Bacillaceae 

AB292819, Bacillus polygoni, Bacillaceae 

D87035, Bacillus horti, Bacillaceae 

AB043864, Bacillus mannanilyticus, Bacillaceae 

AM050346, Vulcanibacillus modesticaldus, type sp., Bacillaceae 

Paenibacillaceae 1 (155) 

D85396, Paenibacillus amylolyticus, Paenibacillaceae

EU558281, Paenibacillus xylanexedens, Paenibacillaceae 

EU558284, Paenibacillus tundrae, Paenibacillaceae 

EU179327, Paenibacillus taichungensis, Paenibacillaceae 

AB045094, Paenibacillus pabuli, Paenibacillaceae 

AY427832, Paenibacillus xylanilyticus, Paenibacillaceae 

AJ716019, Paenibacillus barcinonensis, Paenibacillaceae 

AB073192, Paenibacillus illinoisensis, Paenibacillaceae 

AY323608, Paenibacillus massiliensis, Paenibacillaceae 

AB245384, Paenibacillus panacisoli, Paenibacillaceae 

EF212893, Paenibacillus provencensis, Paenibacillaceae 

EF212892, Paenibacillus urinalis, Paenibacillaceae 

AF273740, Paenibacillus brasilensis, Paenibacillaceae 

AF391124, Paenibacillus terrae, Paenibacillaceae 

D16276, Paenibacillus polymyxa, type sp., Paenibacillaceae 

AF391123, Paenibacillus kribbensis, Paenibacillaceae 

AJ320494, Paenibacillus peoriae, Paenibacillaceae 

AJ271157, Paenibacillus jamilae, Paenibacillaceae 

EU741036, Paenibacillus hunanensis, Paenibacillaceae 

AB073189, Paenibacillus glucanolyticus, Paenibacillaceae 

AB073188, Paenibacillus lautus, Paenibacillaceae 

AY257868, Paenibacillus lactis, Paenibacillaceae 

AF021924, Paenibacillus campinasensis, Paenibacillaceae 

EU888513, Paenibacillus purispatii, Paenibacillaceae 

FN556467, Paenibacillus uliginis, Paenibacillaceae 

AJ318909, Paenibacillus anaericanus, Paenibacillaceae 

GQ355277, Paenibacillus sediminis, Paenibacillaceae 

AB248087, Paenibacillus terrigena, Paenibacillaceae 

GQ423056, Paenibacillus pini, Paenibacillaceae 

AF378694, Paenibacillus turicensis, Paenibacillaceae 

AJ575658, Paenibacillus cineris, Paenibacillaceae 

AY751754, Paenibacillus rhizosphaerae, Paenibacillaceae 

AY208751, Paenibacillus favisporus, Paenibacillaceae 

FJ178001, Paenibacillus cellulositrophicus, Paenibacillaceae 

AJ272249, Paenibacillus azoreducens, Paenibacillaceae 

AB073194, Paenibacillus chibensis, Paenibacillaceae 

AJ250317, Paenibacillus cookii, Paenibacillaceae 

AY741810, Paenibacillus motobuensis, Paenibacillaceae 

AY167814, Paenibacillus barengoltzii, Paenibacillaceae 

EU977789, Paenibacillus phoenicis, Paenibacillaceae 

AY323612, Paenibacillus timonensis, Paenibacillaceae 

AY323609, Paenibacillus sanguinis, Paenibacillaceae 

GU187433, Paenibacillus puldeungensis, Paenibacillaceae 

AB073196, Paenibacillus macerans, Paenibacillaceae 

EU081509, Paenibacillus konsidensis, Paenibacillaceae 

GQ303568, Fontibacillus panacisegetis, Paenibacillaceae 

DQ023221, Fontibacillus aquaticus, type sp., Paenibacillaceae 

DQ453131, Paenibacillus fonticola, Paenibacillaceae 

AY847463, Paenibacillus woosongensis, Paenibacillaceae 

AF480935, Paenibacillus nematophilus, Paenibacillaceae 

GQ214052, Cohnella luojiensis, Paenibacillaceae 

HQ315787, Cohnella arctica, Paenibacillaceae 

GU181267, Cohnella suwonensis, Paenibacillaceae 

GU181266, Cohnella soli, Paenibacillaceae 

EU014872, Cohnella phaseoli, Paenibacillaceae 

HQ704069, Cohnella cellulosilytica, Paenibacillaceae 

AF433165, Cohnella hongkongensis, Paenibacillaceae 

FJ001842, Cohnella terrae, Paenibacillaceae 

FJ001841, Cohnella xylanilytica, Paenibacillaceae 

AJ971483, Cohnella thermotolerans, type sp., Paenibacillaceae 

EU912527, Cohnella damuensis, Paenibacillaceae 

FJ001840, Cohnella thailandensis, Paenibacillaceae 

AB271056, Cohnella panacarvi, Paenibacillaceae 

EF368008, Cohnella yongneupensis , Paenibacillaceae 

DQ459874, Cohnella laeviribosi, Paenibacillaceae 

AB362828, Cohnella fontinalis, Paenibacillaceae 

EU046270, Saccharibacillus kuerlensis, Paenibacillaceae 

EU014873, Saccharibacillus sacchari, type sp., Paenibacillaceae 

X60625, Paenibacillus macquariensis subsp. macquariensis, Paenibacillaceae 

AB360546, Paenibacillus macquariensis subsp. defensor, Paenibacillaceae 

AJ605292, Paenibacillus antarcticus, Paenibacillaceae 

EU815294, Paenibacillus glacialis, Paenibacillaceae 

AJ633647, Paenibacillus wynnii, Paenibacillaceae 

AJ223990, Paenibacillus odorifer, Paenibacillaceae 

AJ011322, Paenibacillus borealis, Paenibacillaceae 

DQ338443, Paenibacillus forsythiae, Paenibacillaceae 

DQ338444, Paenibacillus sabinae, Paenibacillaceae 

DQ471303, Paenibacillus zanthoxyli, Paenibacillaceae 

X77846, Paenibacillus durus, Paenibacillaceae 

GQ985395, Paenibacillus sophorae, Paenibacillaceae 

AJ316013, Paenibacillus stellifer, Paenibacillaceae 

EU257201, Paenibacillus riograndensis, Paenibacillaceae 

DQ358736, Paenibacillus sonchi, Paenibacillaceae 

AJ223987, Paenibacillus graminis, Paenibacillaceae 

GQ985393, Paenibacillus jilunlii, Paenibacillaceae 

AB073199, Paenibacillus lentimorbus, Paenibacillaceae 

AB073198, Paenibacillus popilliae, Paenibacillaceae 

AB073197, Paenibacillus thiaminolyticus, Paenibacillaceae 

AY359885, Paenibacillus dendritiformis, Paenibacillaceae 

AJ320491, Paenibacillus alvei, Paenibacillaceae 

AB073201, Paenibacillus apiarius, Paenibacillaceae 

AY884046, Paenibacillus assamensis, Paenibacillaceae 

DQ890521, Paenibacillus taiwanensis, Paenibacillaceae 

AM411528, Paenibacillus humicus, Paenibacillaceae 

AY167820, Paenibacillus pasadenensis, Paenibacillaceae 

EU939687, Paenibacillus wooponensis, Paenibacillaceae 

GQ423057, Paenibacillus pinihumi, Paenibacillaceae 

EF125184, Paenibacillus tarimensis, Paenibacillaceae 

AF290916, Paenibacillus daejeonensis, Paenibacillaceae 

AB042938, Paenibacillus glycanilyticus, Paenibacillaceae 

FJ820995, Paenibacillus prosopidis, Paenibacillaceae 

GQ383922, Paenibacillus algorifonticola, Paenibacillaceae 

AY839868, Paenibacillus xinjiangensis, Paenibacillaceae 

EU099594, Paenibacillus castaneae, Paenibacillaceae 

DQ407282, Paenibacillus cellulosilyticus, Paenibacillaceae 

AB073202, Paenibacillus curdlanolyticus, Paenibacillaceae 

AB073363, Paenibacillus kobensis, Paenibacillaceae 

AY598818, Paenibacillus phyllosphaerae, Paenibacillaceae 

GU124597, Paenibacillus sacheonensis, Paenibacillaceae 

AF537343, Paenibacillus mendelii, Paenibacillaceae 

DQ291142, Paenibacillus sepulcri, Paenibacillaceae 

AB295646, Paenibacillus montaniterrae, Paenibacillaceae 

AB295645, Paenibacillus siamensis, Paenibacillaceae 

AF237682, Paenibacillus granivorans, Paenibacillaceae 

EU400621, Paenibacillus camelliae, Paenibacillaceae

AB295647, Paenibacillus septentrionalis, Paenibacillaceae 

AB265206, Paenibacillus nanensis, Paenibacillaceae 

AB265205, Paenibacillus thailandensis, Paenibacillaceae 

AJ345023, Paenibacillus agaridevorans, Paenibacillaceae 

GU187432, Paenibacillus chungangensis, Paenibacillaceae 

FN394513, Paenibacillus sputi, Paenibacillaceae 

AY960748, Paenibacillus alkaliterrae, Paenibacillaceae 

AY839867, Paenibacillus harenae, Paenibacillaceae 

AJ345020, Paenibacillus agarexedens, Paenibacillaceae 

EF626690, Paenibacillus contaminans, Paenibacillaceae 

FN293173, Paenibacillus residui, Paenibacillaceae 

EF452662, Paenibacillus ginsengihumi, Paenibacillaceae 

EU391156, Paenibacillus pueri, Paenibacillaceae 

AF353681, Paenibacillus naphthalenovorans, Paenibacillaceae 

AB073203, Paenibacillus validus, Paenibacillaceae 

AB495094, Paenibacillus xylanisolvens, Paenibacillaceae 

AF006076, Paenibacillus edaphicus, Paenibacillaceae 

AF164345, Paenibacillus chinjuensis, Paenibacillaceae 

GQ423055, Paenibacillus filicis, Paenibacillaceae 

AF006077, Paenibacillus mucilaginosus, Paenibacillaceae 

EU939688, Paenibacillus rigui, Paenibacillaceae 

DQ309072, Paenibacillus soli, Paenibacillaceae 

AY116665, Paenibacillus ehimensis, Paenibacillaceae 

AF130254, Paenibacillus koreensis, Paenibacillaceae 

AY090110, Paenibacillus elgii, Paenibacillaceae 

FJ719490, Paenibacillus tianmuensis, Paenibacillaceae 

AB073362, Paenibacillus alginolyticus, Paenibacillaceae 

D82064, Paenibacillus chondroitinus, Paenibacillaceae 

AB245386, Paenibacillus pocheonensis, Paenibacillaceae 

EU570250, Paenibacillus aestuarii , Paenibacillaceae 

EU391157, Paenibacillus pectinilyticus, Paenibacillaceae 

FN689718, Paenibacillus chartarius, Paenibacillaceae 

AB045100, Paenibacillus chitinolyticus, Paenibacillaceae 

AY839866, Paenibacillus gansuensis, Paenibacillaceae 

AB271057, Paenibacillus ginsengarvi, Paenibacillaceae 

AB179866, Paenibacillus hodogayensis, Paenibacillaceae 

AB041720, Paenibacillus koleovorans, Paenibacillaceae 

AY530294, Paenibacillus larvae, Paenibacillaceae 

AB254031, Thermobacillus composti, Paenibacillaceae 

AJ005795, Thermobacillus xylanilyticus, type sp., Paenibacillaceae 

Alicyclobacillaceae (20) 

AJ133633, Alicyclobacillus hesperidum, Alicyclobacillaceae 

AB264020, Alicyclobacillus sacchari, Alicyclobacillaceae 

AB076660, Alicyclobacillus acidiphilus, Alicyclobacillaceae 

AB042057, Alicyclobacillus acidoterrestris, Alicyclobacillaceae 

AB264021, Alicyclobacillus fastidiosus, Alicyclobacillaceae 

AB059674, Alicyclobacillus acidocaldarius subsp. rittmannii, Alicyclobacillaceae 

AB084128, Alicyclobacillus sendaiensis, Alicyclobacillaceae 

AJ496806, Alicyclobacillus acidocaldarius subsp. acidocaldarius, type sp., Alicyclobacillaceae 

AY425985, Alicyclobacillus vulcanalis, Alicyclobacillaceae 

AB264025, Alicyclobacillus macrosporangiidus, Alicyclobacillaceae 

AB042059, Alicyclobacillus cycloheptanicus, Alicyclobacillaceae 

AB264022, Alicyclobacillus kakegawensis, Alicyclobacillaceae 

AB264024, Alicyclobacillus shizuokensis, Alicyclobacillaceae 

AB042055, Alicyclobacillus herbarius, Alicyclobacillaceae 

AB089843, Alicyclobacillus disulfidooxidans, Alicyclobacillaceae 

Z21979, Alicyclobacillus tolerans, Alicyclobacillaceae 

AB264026, Alicyclobacillus contaminans, Alicyclobacillaceae 

AB089840, Alicyclobacillus pomorum, Alicyclobacillaceae 

EU137838, Alicyclobacillus ferrooxydans, Alicyclobacillaceae 

FM179383, Alicyclobacillus aeris, Alicyclobacillaceae 

AB245375, Tumebacillus ginsengisoli, Alicyclobacillaceae 

DQ444975, Tumebacillus permanentifrigoris, type sp., Alicyclobacillaceae 

AJ564766, Alicyclobacillus pohliae, Alicyclobacillaceae 

FN552009, Microaerobacter geothermalis, type sp., Bacillaceae 

AJ242495, Thermicanus aegyptius, type sp., Unclassified Bacillales 

AY753654, Caldalkalibacillus thermarum, type sp., Bacillaceae 

DQ221694, Caldalkalibacillus uzonensis, Bacillaceae 

Thermoactinomycetaceae (18) 

AM940019, Desmospora activa, type sp., Thermoactinomycetaceae 

JN006758, Marininema mesophilum, type sp., Thermoactinomycetaceae 

HQ383683, Melghirimyces algeriensis, type sp., Thermoactinomycetaceae 

FN665656, Kroppenstedtia eburnea, type sp., Thermoactinomycetaceae 

AB239532, Mechercharimyces asporophorigenens, Thermoactinomycetaceae 

AB239529, Mechercharimyces mesophilus, type sp., Thermoactinomycetaceae 

AF138735, Seinonella peptonophila, type sp., Thermoactinomycetaceae 

AB049939, Shimazuella kribbensis, type sp., Thermoactinomycetaceae 

AJ251779, Laceyella sacchari, type sp., Thermoactinomycetaceae 

FJ426598, Laceyella tengchongensis, Thermoactinomycetaceae 

FJ422144, Laceyella sediminis, Thermoactinomycetaceae 

AF138736, Laceyella putida, Thermoactinomycetaceae 

AF138734, Thermoactinomyces intermedius, Thermoactinomycetaceae 

AF138739, Thermoactinomyces vulgaris, type sp., Thermoactinomycetaceae 

AF138733, Thermoflavimicrobium dichotomicum, type sp., Thermoactinomycetaceae 

AB088362, Planifilum fulgidum, Thermoactinomycetaceae 

DQ119659, Planifilum yunnanense, Thermoactinomycetaceae 

AB088364, Planifilum fimeticola, type sp., Thermoactinomycetaceae 

AB042060, Bacillus schlegelii, Bacillaceae 

CP002017, Kyrpidia tusciae, type sp., Alicyclobacillaceae 

AB250968, Calditerricola satsumensis, type sp., Bacillaceae 

AB308475, Calditerricola yamamurae, Bacillaceae 

Clostridia (609) 

Clostridiaceae 1 (111) 

AB018184, Eubacterium multiforme, Eubacteriaceae 

AB018185, Eubacterium nitritogenes, Eubacteriaceae 

AB018183, Eubacterium budayi, Eubacteriaceae 

X68174, Clostridium baratii, Clostridiaceae 

AB161367, Clostridium sardiniense, Clostridiaceae 

AB540985, Eubacterium moniliforme, Eubacteriaceae 

AJ420008, Clostridium colicanis, Clostridiaceae 

X68183, Clostridium aurantibutyricum, Clostridiaceae 

X71850, Clostridium chartatabidum, Clostridiaceae 

X97432, Clostridium vincentii, Clostridiaceae 

X75907, Clostridium paraputrificum, Clostridiaceae 

AJ458418, Clostridium diolis, Clostridiaceae 

Y18171, Clostridium roseum, Clostridiaceae 

X68179, Clostridium beijerinckii, Clostridiaceae 

U16122, Clostridium saccharoperbutylacetonicum, Clostridiaceae

U16147, Clostridium saccharobutylicum, Clostridiaceae 

X71857, Clostridium puniceum, Clostridiaceae 

AJ458420, Clostridium butyricum, type sp., Clostridiaceae 

AY228334, Clostridium chromiireducens, Clostridiaceae 

AF092548, Clostridium gasigenes, Clostridiaceae 

AJ276992, Clostridium uliginosum, Clostridiaceae 

U51843, Clostridium chauvoei, Clostridiaceae 

U59278, Clostridium septicum, Clostridiaceae 

X98395, Clostridium isatidis, Clostridiaceae 

M59091, Clostridium carnis, Clostridiaceae 

Y18174, Clostridium tertium, Clostridiaceae 

Y18175, Clostridium sartagoforme, Clostridiaceae 

X77844, Clostridium celatum, Clostridiaceae 

Y18176, Clostridium disporicum, Clostridiaceae 

X76745, Clostridium quinii, Clostridiaceae 

X76650, Sarcina maxima, Clostridiaceae 

X76649, Sarcina ventriculi, type sp., Clostridiaceae 

FR733677, Eubacterium tarantellae, Eubacteriaceae 

CP000246, Clostridium perfringens , Clostridiaceae 

AF069742, Clostridium frigidicarnis, Clostridiaceae 

DQ196623, Clostridium hydrogeniformans, Clostridiaceae 

X76740, Clostridium intestinale, Clostridiaceae 

AF127023, Clostridium algidicarnis, Clostridiaceae 

AF127024, Clostridium putrefaciens, Clostridiaceae 

M59088, Clostridium fallax, Clostridiaceae 

Y18189, Anaerobacter polyendosporus, type sp., Clostridiaceae 

EU037903, Clostridium amylolyticum, Clostridiaceae 

AB542932, Clostridium cadaveris, Clostridiaceae 

FR749900, Acetivibrio multivorans, Ruminococcaceae 

DQ852338, Proteiniclasticum ruminis, type sp., Clostridiaceae 

DQ196621, Clostridium cavendishii, Clostridiaceae 

X71849, Clostridium cellulovorans, Clostridiaceae 

CP000673, Clostridium kluyveri, Clostridiaceae 

FR733688, Clostridium ljungdahlii, Clostridiaceae 

M59113, Clostridium tyrobutyricum, Clostridiaceae 

DQ114945, Clostridium aciditolerans, Clostridiaceae 

AM261414, Clostridium nitrophenolicum, Clostridiaceae 

FR733710, Clostridium carboxidivorans, Clostridiaceae 

Y18813, Clostridium drakei, Clostridiaceae 

X77835, Clostridium magnum, Clostridiaceae 

FR870440, Clostridium pasteurianum, Clostridiaceae 

EU816420, Clostridium arbusti, Clostridiaceae 

AJ237756, Clostridium acidisoli, Clostridiaceae 

AJ237755, Clostridium akagii, Clostridiaceae 

AE001437, Clostridium acetobutylicum , Clostridiaceae 

AF270501, Clostridium felsineum, Clostridiaceae 

X73439, Clostridium collagenovorans, Clostridiaceae 

AY858804, Clostridium lundense, Clostridiaceae 

DQ241819, Clostridium tetanomorphum, Clostridiaceae 

FR749893, Clostridium malenominatum, Clostridiaceae 

AJ506115, Clostridium estertheticum subsp. laramiense, Clostridiaceae 

AJ506116, Clostridium frigoris, Clostridiaceae 

S46734, Clostridium estertheticum subsp. estertheticum, Clostridiaceae 

AJ506118, Clostridium lacusfryxellense, Clostridiaceae 

AJ297443, Clostridium psychrophilum, Clostridiaceae 

AJ506119, Clostridium bowmanii, Clostridiaceae 

AY117755, Clostridium algoriphilum, Clostridiaceae 

DQ296031, Clostridium tagluense, Clostridiaceae 

EF199998, Clostridium sulfidigenes, Clostridiaceae 

AY024332, Clostridium thiosulfatireducens, Clostridiaceae 

AF241844, Clostridium subterminale, Clostridiaceae 

X68316, Clostridium argentinense, Clostridiaceae 

AM114453, Clostridium schirmacherense, Clostridiaceae 

X96736, Clostridium pascui, Clostridiaceae 

AF156796, Clostridium peptidivorans, Clostridiaceae 

M59093, Clostridium cochlearium, Clostridiaceae 

X74770, Clostridium tetani, Clostridiaceae 

X79862, Clostridium acetireducens, Clostridiaceae 

AB037910, Clostridium haemolyticum, Clostridiaceae 

AB045606, Clostridium novyi, Clostridiaceae 

X72869, Clostridium thermopalmarium, Clostridiaceae 

X72868, Clostridium thermobutyricum, Clostridiaceae 

DQ126679, Clostridium aestuarii, Clostridiaceae 

X75272, Clostridium grantii, Clostridiaceae 

AY903294, Clostridium ganghwense, Clostridiaceae 

X76744, Clostridium homopropionicum, Clostridiaceae 

FR733681, Ilyobacter delafieldii, Fusobacteriaceae 

L37585, Clostridium botulinum, Clostridiaceae 

AY533380, Eubacterium combesii, Eubacteriaceae 

X68189, Clostridium sporogenes, Clostridiaceae 

EF197795, Clostridium tepidiprofundi, Clostridiaceae 

FR870444, Clostridium limosum, Clostridiaceae 

X73448, Clostridium proteolyticum, Clostridiaceae 

AB566416, Clostridium histolyticum, Clostridiaceae 

X77838, Oxobacter pfennigii, type sp., Clostridiaceae 

X75788, Caloramator indicus, Clostridiaceae 

X99238, Thermobrachium celere, type sp., Clostridiaceae 

X90488, Caloramator proteoclasticus, Clostridiaceae 

AF104215, Caloramator coolhaasii, Clostridiaceae 

EU409943, Caloramator australicus, Clostridiaceae 

L09187, Caloramator fervidus, type sp., Clostridiaceae 

GU723692, Caloramator mitchellensis, Clostridiaceae 

FM244718, Caloramator boliviensis, Clostridiaceae 

AF181848, Caloramator viterbiensis, Clostridiaceae 

FJ481102, Fervidicella metallireducens, type sp., Clostridiaceae 

Y18179, Clostridium cylindrosporum, Clostridiaceae 

FR749965, Thermohydrogenium kirishiense, type sp., Syntrophomonadaceae 

FR870449, Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterales 

X93359, Thermoanaerobacterium aotearoense, Thermoanaerobacterales 

FM999998, Thermoanaerobacterium thermostercoris, Thermoanaerobacterales 

L09171, Thermoanaerobacterium thermosulfurigenes, type sp., Thermoanaerobacterales 

L09172, Thermoanaerobacterium xylanolyticum, Thermoanaerobacterales 

L09169, Thermoanaerobacterium saccharolyticum, Thermoanaerobacterales 

AY350594, Thermoanaerobacterium aciditolerans, Thermoanaerobacterales 

JF262044, Caloribacterium cisternae, type sp., Thermoanaerobacteraceae 

U40229, Caldanaerobius polysaccharolyticus, Thermoanaerobacteraceae 

U75993, Caldanaerobius zeae, Thermoanaerobacteraceae 

EF507903, Caldanaerobius fijiensis, type sp., Thermoanaerobacteraceae 

AY331143, Mahella australiensis, type sp., Thermoanaerobacterales 

Lachnospiraceae (103) 

Y18184, Clostridium indolis, Clostridiaceae 

AF067965, Clostridium methoxybenzovorans, Clostridiaceae 

AY353957, Clostridium amygdalinum, Clostridiaceae

Y18185, Clostridium saccharolyticum, Clostridiaceae 

AB075772, Clostridium sphenoides, Clostridiaceae 

Y11568, Desulfotomaculum guttoideum, Peptococcaceae 

X71848, Clostridium celerecrescens, Clostridiaceae 

X76163, Clostridium aerotolerans, Clostridiaceae 

X76739, Clostridium xylanolyticum, Clostridiaceae 

AF092549, Clostridium algidixylanolyticum, Clostridiaceae 

AJ311620, Clostridium hathewayi, Clostridiaceae 

DQ279736, Clostridium aldenense, Clostridiaceae 

DQ279737, Clostridium citroniae, Clostridiaceae 

M59089, Clostridium clostridioforme, Clostridiaceae 

AJ582080, Clostridium asparagiforme, Clostridiaceae 

EF564277, Clostridium lavalense, Clostridiaceae 

AJ508452, Clostridium bolteae, Clostridiaceae 

M59112, Clostridium symbiosum, Clostridiaceae 

HQ223106, Fusobacterium naviforme, Fusobacteriaceae 

DQ377947, Moryella indoligenes, type sp., Lachnospiraceae 

AY323228, Oribacterium sinus, type sp., Lachnospiraceae 

AJ428553, Butyrivibrio hungatei, Lachnospiraceae 

U37378, Butyrivibrio proteoclasticus, Lachnospiraceae 

U41172, Butyrivibrio fibrisolvens, type sp., Lachnospiraceae 

L04165, Clostridium aminophilum, Clostridiaceae 

AB525414, Eubacterium saburreum, Eubacteriaceae 

X87152, Johnsonella ignava, type sp., Lachnospiraceae 

ABWN01000012, Butyrivibrio crossotus, Lachnospiraceae 

X71860, Eubacterium cellulosolvens, Eubacteriaceae 

AF202264, Syntrophococcus sucromutans, type sp., Lachnospiraceae 

AJ505973, Marvinbryantia formatexigens, type sp., Lachnospiraceae 

L76602, Ruminococcus lactaris, Ruminococcaceae 

L76604, Ruminococcus torques, Ruminococcaceae 

FJ611794, Ruminococcus faecis, Ruminococcaceae 

AB233029, Clostridium glycyrrhizinilyticum, Clostridiaceae 

EF031542, Coprococcus comes, Lachnospiraceae 

X73443, Clostridium nexile, Clostridiaceae 

AB023973, Clostridium hylemonae, Clostridiaceae 

AF262238, Clostridium scindens, Clostridiaceae 

L34619, Dorea formicigenerans, type sp., Lachnospiraceae 

AJ132842, Dorea longicatena, Lachnospiraceae 

AF445239, Hespellia porcina, Lachnospiraceae 

AF445264, Hespellia stercorisuis, type sp., Lachnospiraceae 

FR749917, Clostridium oroticum, Clostridiaceae 

FR749936, Eubacterium fissicatena, Eubacteriaceae 

FR749946, Eubacterium contortum, Eubacteriaceae 

X94967, Ruminococcus gnavus, Ruminococcaceae 

DQ100449, Lactonifactor longoviformis, type sp., Clostridiaceae 

EF529620, Ruminococcus gauvreauii, Ruminococcaceae 

AJ133124, Blautia luti, Unclassified Clostridiales 

X85101, Ruminococcus obeum, Ruminococcaceae 

EF036467, Blautia wexlerae, Unclassified Clostridiales 

AB439724, Blautia glucerasea, Unclassified Clostridiales 

X94965, Blautia schinkii, Unclassified Clostridiales 

AB571656, Blautia coccoides, Unclassified Clostridiales 

L76595, Blautia producta, Unclassified Clostridiales 

AB534168, Blautia hansenii, Unclassified Clostridiales 

HM626177, Blautia stercoris, Unclassified Clostridiales 

X95624, Blautia hydrogenotrophica, Unclassified Clostridiales 

AF445285, Robinsoniella peoriensis, type sp., Lachnospiraceae 

GU233441, Roseburia cecicola, type sp., Lachnospiraceae 

AJ270482, Roseburia hominis, Lachnospiraceae 

AJ312385, Roseburia intestinalis, Lachnospiraceae 

AY305310, Roseburia faecis, Lachnospiraceae 

AJ270473, Roseburia inulinivorans, Lachnospiraceae 

L34627, Eubacterium rectale, Eubacteriaceae 

AF298663, Lachnobacterium bovis, type sp., Lachnospiraceae 

FR733672, Eubacterium oxidoreducens, Eubacteriaceae 

AF399956, Shuttleworthia satelles, type sp., Lachnospiraceae 

X95893, Pseudobutyrivibrio ruminis, type sp., Lachnospiraceae 

AJ428548, Pseudobutyrivibrio xylanivorans, Lachnospiraceae 

DQ497994, Bacteroides galacturonicus, Bacteroidaceae 

GU269544, Lactobacillus rogosae, Lactobacillaceae 

L34420, Eubacterium eligens, Eubacteriaceae 

FR733699, Lachnospira multipara, type sp., Lachnospiraceae 

DQ925472, Howardella ureilytica, type sp., Unclassified Clostridiales 

AF126687, Clostridium fimetarium, Clostridiaceae 

M59083, Acetitomaculum ruminis, type sp., Lachnospiraceae 

AB038359, Coprococcus catus, Lachnospiraceae 

ABVQ01000036, Bacteroides pectinophilus, Bacteroidaceae 

X87151, Catonella morbi, type sp., Lachnospiraceae 

AJ270487, Anaerostipes caccae, type sp., Lachnospiraceae 

FR749932, Eubacterium hadrum, Eubacteriaceae 

FJ947528, Anaerostipes butyraticus, Lachnospiraceae 

FR749897, Acetivibrio ethanolgignens, Ruminococcaceae 

GU269550, Eubacterium uniforme, Eubacteriaceae 

L34421, Eubacterium ventriosum, Eubacteriaceae 

AJ272036, Parasporobacterium paucivorans, type sp., Lachnospiraceae 

AF116854, Sporobacterium olearium, type sp., Lachnospiraceae 

AY494606, Clostridium jejuense, Clostridiaceae 

AF116920, Clostridium xylanovorans, Clostridiaceae 

X73436, Clostridium aminovalericum, Clostridiaceae 

CP000885, Clostridium phytofermentans, Clostridiaceae 

X71853, Clostridium populeti, Clostridiaceae 

L34418, Clostridium herbivorans, Clostridiaceae 

X77839, Clostridium polysaccharolyticum, Clostridiaceae 

AY534872, Anaerosporobacter mobilis, type sp., Clostridiaceae 

L34628, Eubacterium xylanophilum, Eubacteriaceae 

L34621, Eubacterium hallii, Eubacteriaceae 

AB008552, Eubacterium ruminantium, Eubacteriaceae 

EF031543, Coprococcus eutactus, type sp., Lachnospiraceae 

EF382648, Cellulosilyticum ruminicola, Lachnospiraceae 

X71851, Cellulosilyticum lentocellum, Lachnospiraceae 

HQ020487, Defluviitalea saccharophila, type sp., Defluviitaleaceae 

GQ922846, Natranaerovirga pectinivora, Unclassified Clostridiales 

GQ863487, Natranaerovirga hydrolytica, type sp., Unclassified Clostridiales 

X76746, Clostridium neopropionicum, Clostridiaceae 

X77841, Clostridium propionicum, Clostridiaceae 

AY033434, Clostridium lactatifermentans, Clostridiaceae 

X76748, Clostridium colinum, Clostridiaceae 

DQ117465, Gracilibacter thermotolerans, type sp., Gracilibacteraceae 

AB186360, Lutispora thermophila, type sp., Clostridiaceae 

FR749980, Acetomicrobium faecale, Bacteroidaceae 

AB450762, Caldicoprobacter oshimai, type sp., Caldicoprobacteraceae 

GU216701, Caldicoprobacter algeriensis, Caldicoprobacteraceae 

AB490809, Christensenella minuta, type sp., Christensenellaceae

Peptostreptococcaceae (29) 

AY326462, Peptostreptococcus anaerobius, type sp., Peptostreptococcaceae 

DQ160208, Peptostreptococcus stomatis, Peptostreptococcaceae 

AY167952, Peptostreptococcus russellii, Peptostreptococcaceae 

AB023970, Clostridium hiranonis, Clostridiaceae 

AB075770, Clostridium difficile, Clostridiaceae 

FR733662, Clostridium mangenotii, Clostridiaceae 

X73447, Clostridium irregulare, Clostridiaceae 

X76750, Clostridium glycolicum, Clostridiaceae 

FR733682, Clostridium mayombei, Clostridiaceae 

AY438672, Clostridium bartlettii, Clostridiaceae 

M59107, Clostridium lituseburense, Clostridiaceae 

AB075769, Clostridium bifermentans, Clostridiaceae 

AB542933, Clostridium ghonii, Clostridiaceae 

AB075771, Clostridium sordellii, Clostridiaceae 

FR749984, Eubacterium tenue, Eubacteriaceae 

AY245527, Tepidibacter formicigenes, Peptostreptococcaceae 

AY158079, Tepidibacter thalassicus, type sp., Peptostreptococcaceae 

GQ231514, Tepidibacter mesophilus, Peptostreptococcaceae 

Z69929, Clostridium paradoxum, Clostridiaceae 

FR749954, Clostridium thermoalcaliphilum, Clostridiaceae 

AY682207, Sporacetigenium mesophilum, type sp., Peptostreptococcaceae 

GU269551, Eubacterium yurii subsp. yurii, Eubacteriaceae 

AY533381, Eubacterium yurii subsp. margaretiae, Eubacteriaceae 

AY533382, Eubacterium yurii subsp. schtitka, Eubacteriaceae 

AF537211, Filifactor villosus, type sp., Peptostreptococcaceae 

AF450134, Proteocatella sphenisci, type sp., Unclassified Clostridiales 

GU562448, Acetoanaerobium noterae, type sp., Unclassified Clostridiales 

X77845, Clostridium litorale, Clostridiaceae 

AF071416, Eubacterium acidaminophilum, Eubacteriaceae 


Y18183, Clostridium aceticum, Clostridiaceae 

X77836, Clostridium formicaceticum, Clostridiaceae 

AB201750, Anaerovirgula multivorans, type sp., Unclassified Clostridiales 

EU878275, Natronincola ferrireducens, Clostridiaceae 

EF382661, Natronincola peptidivorans, Clostridiaceae 

Y16716, Natronincola histidinovorans, type sp., Clostridiaceae 

AF373919, Tindallia californiensis, Clostridiaceae 

Y15626, Tindallia magadiensis, type sp., Clostridiaceae 

DQ234901, Tindallia texcoconensis, Clostridiaceae 

AF522323, Anoxynatronum sibiricum, type sp., Clostridiaceae 

DQ250645, Alkaliphilus oremlandii, Clostridiaceae 

EU627628, Alkaliphilus halophilus, Clostridiaceae 

AF467248, Alkaliphilus crotonatoxidans, Clostridiaceae 

EF382660, Alkaliphilus peptidifermentans, Clostridiaceae 

AB037677, Alkaliphilus transvaalensis, type sp., Clostridiaceae 

Incertae Sedis XIII (14) 

U13037, Eubacterium minutum, Eubacteriaceae 

Z36274, Eubacterium nodatum, Eubacteriaceae 

AJ310135, Eubacterium pyruvativorans, Eubacteriaceae 

U13039, Eubacterium infirmum, Eubacteriaceae 

AJ006963, Eubacterium sulci, Eubacteriaceae 

AB037874, Mogibacterium diversum, Unclassified Clostridiales 

AB037875, Mogibacterium neglectum, Unclassified Clostridiales 

AB021702, Mogibacterium vescum, Unclassified Clostridiales 

Z36296, Mogibacterium timidum, Unclassified Clostridiales 

AB021701, Mogibacterium pumilum, type sp., Unclassified Clostridiales 

Z36272, Eubacterium brachy, Eubacteriaceae 

AJ251215, Anaerovorax odorimutans, type sp., Unclassified Clostridiales 

U65987, Eubacterium saphenum, Eubacteriaceae 

AF016691, Acidaminobacter hydrogenoformans, type sp., Unclassified Clostridiales 

Incertae Sedis XII (3) 

AF050099, Fusibacter paucivorans, type sp., Unclassified Clostridiales 

FR851323, Fusibacter tunisiensis, Unclassified Clostridiales 

AY272039, Guggenheimella bovis, type sp., Unclassified Clostridiales 


DQ643978, Geosporobacter subterraneus, type sp., Clostridiaceae 

EU443727, Thermotalea metallivorans, type sp., Clostridiaceae 

AJ320233, Caminicella sporogenes, type sp., Clostridiaceae 

AF458779, Clostridium caminithermale, Clostridiaceae 

X77837, Clostridium halophilum, Clostridiaceae 

FR749894, Clostridium purinilyticum, Clostridiaceae 

L34612, Eubacterium angustum, Eubacteriaceae 

EF116488, Proteiniborus ethanoligenes, type sp., Unclassified Clostridiales 

Incertae Sedis XI (35) 

AF542232, Anaerococcus prevotii, type sp., Unclassified Clostridiales 

AF542234, Anaerococcus tetradius, Unclassified Clostridiales 

Y07841, Anaerococcus octavius, Unclassified Clostridiales 

AF542233, Anaerococcus lactolyticus, Unclassified Clostridiales 

DQ911243, Anaerococcus murdochii, Unclassified Clostridiales 

ABXA01000039, Anaerococcus hydrogenalis, Unclassified Clostridiales 

AF542229, Anaerococcus vaginalis, Unclassified Clostridiales 

EU483153, Murdochiella asaccharolytica, type sp., Unclassified Clostridiales 

X69837, Helcococcus kunzii, type sp., Unclassified Clostridiales 

Y16279, Helcococcus ovis, Unclassified Clostridiales 

AJ579914, Helcococcus sueciensis, Unclassified Clostridiales 

AF542227, Finegoldia magna, type sp., Unclassified Clostridiales 

AB038361, Gallicola barnesae, type sp., Unclassified Clostridiales 

AY323523, Parvimonas micra, type sp., Unclassified Clostridiales 

DQ911241, Peptoniphilus gorbachii, Unclassified Clostridiales 

Y07839, Peptoniphilus harei, Unclassified Clostridiales 

DQ911242, Peptoniphilus olsenii, Unclassified Clostridiales 

AF542230, Peptoniphilus lacrimalis, Unclassified Clostridiales 

AB298735, Anaerosphaera aminiphila, type sp., Peptostreptococcaceae 

AF542228, Peptoniphilus asaccharolyticus, type sp., Unclassified Clostridiales 

AY153431, Peptoniphilus indolicus, Unclassified Clostridiales 

GU440754, Peptoniphilus methioninivorax, Unclassified Clostridiales 

Y07840, Peptoniphilus ivorii, Unclassified Clostridiales 

AB547639, Bacteroides coagulans, Bacteroidaceae 

EF522948, Tepidimicrobium xylanilyticum, Clostridiaceae 

AY656718, Tepidimicrobium ferriphilum, type sp., Clostridiaceae 

Z69293, Clostridium ultunense, Clostridiaceae 

X80227, Tissierella creatinophila, Unclassified Clostridiales 

X80832, Tissierella praeacuta, type sp., Unclassified Clostridiales 

FR749955, Tissierella creatinini, Unclassified Clostridiales 

AY353956, Soehngenia saccharolytica, type sp., Unclassified Clostridiales 

AF358114, Sporanaerobacter acetigenes, type sp., Unclassified Clostridiales

L11305, Sedimentibacter hydroxybenzoicus, type sp., Unclassified Clostridiales 

AJ404680, Sedimentibacter saalensis, Unclassified Clostridiales 

AB218661, Dethiosulfatibacter aminovorans, type sp., Unclassified Clostridiales 


EF026082, Clostridiisalibacter paucivorans, type sp., Clostridiaceae 

EU567322, Sporosalibacterium faouarense, type sp., Clostridiaceae 

AF113543, Thermohalobacter berrensis, type sp., Clostridiaceae 

AJ272422, Caloranaerobacter azorensis, type sp., Clostridiaceae 

AY176772, Garciella nitratireducens, type sp., Eubacteriaceae 

Eubacteriaceae (16) 

X96958, Acetobacterium paludosum, Eubacteriaceae 

AJ297449, Acetobacterium tundrae, Eubacteriaceae 

X96960, Acetobacterium bakii, Eubacteriaceae 

X96959, Acetobacterium fimetarium, Eubacteriaceae 

X96956, Acetobacterium carbinolicum, Eubacteriaceae 

X96957, Acetobacterium malicum, Eubacteriaceae 

X96954, Acetobacterium woodii, type sp., Eubacteriaceae 

X96955, Acetobacterium wieringae, Eubacteriaceae 

AF073898, Eubacterium aggregans, Eubacteriaceae 

M23927, Eubacterium barkeri, Eubacteriaceae 

AB036759, Pseudoramibacter alactolyticus, type sp., Eubacteriaceae 

X96961, Eubacterium callanderi, Eubacteriaceae 

M59120, Eubacterium limosum, type sp., Eubacteriaceae 

AY312403, Alkalibacter saccharofermentans, type sp., Eubacteriaceae 

FJ438469, Alkalibaculum bacchi, type sp., Eubacteriaceae 

AJ518871, Anaerofustis stercorihominis, type sp., Eubacteriaceae 

Incertae Sedis XIV (3) 

AY064217, Anaerobranca californiensis, Unclassified Clostridiales 

EF190921, Anaerobranca zavarzinii, Unclassified Clostridiales 

AF203703, Anaerobranca gottschalkii, Unclassified Clostridiales 

Ruminococcaceae (48) 

AJ305238, Clostridium leptum, Clostridiaceae 

X66002, Clostridium sporosphaeroides, Clostridiaceae 

L76600, Ruminococcus bromii, Ruminococcaceae 

HM037995, Eubacterium coprostanoligenes, Eubacteriaceae 

L09177, Clostridium cellulosi, Clostridiaceae 

AY295777, Ethanoligenens harbinense, type sp., Ruminococcaceae 

GU562446, Gemmiger formicilis, type sp., Hyphomicrobiaceae 

AJ518869, Subdoligranulum variabile, type sp., Ruminococcaceae 

AJ413954, Faecalibacterium prausnitzii, type sp., Ruminococcaceae 

X98011, Anaerofilum agile, Ruminococcaceae 

X97852, Anaerofilum pentosovorans, type sp., Ruminococcaceae 

AJ315980, Anaerotruncus colihominis, type sp., Ruminococcaceae 

EU158190, Hydrogenoanaerobacterium saccharovorans, type sp., Ruminococcaceae 

AY487928, Acetanaerobacterium elongatum, type sp., Ruminococcaceae 

L76596, Ruminococcus callidus, Ruminococcaceae 

L76603, Ruminococcus flavefaciens, type sp., Ruminococcaceae 

AJ515913, Ruminococcus champanellensis, Ruminococcaceae 

L76598, Ruminococcus albus, Ruminococcaceae 

Y18181, Clostridium methylpentosum, Clostridiaceae 

L34625, Eubacterium siraeum, Eubacteriaceae 

AY136666, Pseudoflavonifractor capillosus, type sp., Unclassified Clostridiales 

AY724678, Flavonifractor plautii, type sp., Unclassified Clostridiales 

X81125, Clostridium viride, Clostridiaceae 

AB238598, Oscillibacter valericigenes, type sp., Oscillospiraceae 

AF167711, Papillibacter cinnamivorans, type sp., Ruminococcaceae 

Z49863, Sporobacter termitidis, type sp., Ruminococcaceae 

EU410376, Butyricicoccus pullicaecorum, type sp., Clostridiaceae 

L34618, Eubacterium desmolans, Eubacteriaceae 

X71847, Clostridium cellulolyticum, Clostridiaceae 

X71852, Clostridium papyrosolvens, Clostridiaceae 

FR749966, Clostridium hungatei, Clostridiaceae 

AB267266, Clostridium sufflavum, Clostridiaceae 

X71856, Clostridium cellobioparum, Clostridiaceae 

FR733680, Clostridium termitidis, Clostridiaceae 

Y18180, Clostridium thermosuccinogenes, Clostridiaceae 

L35517, Bacteroides cellulosolvens, Bacteroidaceae 

L35516, Acetivibrio cellulolyticus, type sp., Ruminococcaceae 

X71846, Clostridium aldrichii, Clostridiaceae 

AY959944, Clostridium alkalicellulosi, Clostridiaceae 

AB186359, Clostridium clariflavum, Clostridiaceae 

CP000568, Clostridium thermocellum , Clostridiaceae 

AB125279, Clostridium straminisolvens, Clostridiaceae 

AY949857, Saccharofermentans acetigenes, type sp., Clostridiaceae 

AJ575187, Fastidiosipila sanguinis, type sp., Ruminococcaceae 

X72870, Clostridium stercorarium subsp. thermolacticum, Clostridiaceae 

AF266461, Clostridium stercorarium subsp. leptospartum, Clostridiaceae 

AJ310082, Clostridium stercorarium subsp. stercorarium, Clostridiaceae 

AB221372, Clostridium caenicola, Clostridiaceae 

AJ251214, Pelospora glutarica, type sp., Syntrophomonadaceae 

AB274039, Syntrophomonas palmitatica, Syntrophomonadaceae 

AY290767, Syntrophomonas curvata, Syntrophomonadaceae 

AF022249, Syntrophomonas sapovorans, Syntrophomonadaceae 

DQ666175, Syntrophomonas wolfei subsp. saponavida, Syntrophomonadaceae 

DQ898277, Syntrophomonas zehnderi, Syntrophomonadaceae 

DQ288691, Syntrophomonas cellicola, Syntrophomonadaceae 

CP000448, Syntrophomonas wolfei subsp. wolfei, type sp., Syntrophomonadaceae 

AY536889, Syntrophomonas erecta, Syntrophomonadaceae 

X99980, Thermosyntropha lipolytica, type sp., Syntrophomonadaceae 

HM807481, Thermosyntropha tengcongensis, Syntrophomonadaceae 

AB021305, Syntrophothermus lipocalidus, type sp., Syntrophomonadaceae 

AY538171, Desulfitibacter alkalitolerans, type sp., Peptococcaceae 

FJ788525, Desulfitispora alkaliphila, type sp., Peptococcaceae 

Veillonellaceae (73) 

GQ422716, Selenomonas artemidis, Veillonellaceae 

AF287799, Selenomonas noxia, Veillonellaceae 

AF287803, Selenomonas flueggei, Veillonellaceae 

AF287802, Selenomonas infelix, Veillonellaceae 

AF287801, Selenomonas dianae, Veillonellaceae 

AJ010963, Centipeda periodontii, type sp., Veillonellaceae 

Y09434, Schwartzia succinivorans, type sp., Veillonellaceae 

AF479674, Mitsuokella jalaludinii, Veillonellaceae 

X81878, Mitsuokella multacida, type sp., Veillonellaceae 

M62702, Selenomonas ruminantium subsp. ruminantium, Veillonellaceae 

AB003379, Selenomonas ruminantium subsp. lactilytica, Veillonellaceae 

EF139191, Selenomonas bovis, Veillonellaceae 

AF001901, Selenomonas lipolytica, Veillonellaceae

AF287793, Selenomonas sputigena, type sp., Veillonellaceae 

AB034191, Anaerovibrio lipolyticus, type sp., Veillonellaceae 

AB300988, Megamonas funiformis, Veillonellaceae 

EU346729, Megamonas rupellensis, Veillonellaceae 

AJ420107, Megamonas hypermegale, type sp., Veillonellaceae 

FR870446, Pectinatus cerevisiiphilus, type sp., Veillonellaceae 

DQ223731, Pectinatus haikarae, Veillonellaceae 

AY428574, Pectinatus portalensis, Veillonellaceae 

Y18190, Propionispira arboris, type sp., Veillonellaceae 

DQ217599, Zymophilus raffinosivorans, type sp., Veillonellaceae 

AJ010960, Anaerosinus glycerini, type sp., Veillonellaceae 

AJ010962, Dendrosporobacter quercicolus, type sp., Veillonellaceae 

AJ508927, Propionispora hippei, Veillonellaceae 

AJ279802, Propionispora vibrioides, type sp., Veillonellaceae 

DQ145536, Pelosinus fermentans, type sp., Veillonellaceae 

AM258975, Pelosinus propionicus, type sp., Veillonellaceae 

JF750003, Pelosinus defluvii, Veillonellaceae 

AJ010964, Acetonema longum, type sp., Veillonellaceae 

AF071415, Anaeromusa acidaminophila, type sp., Veillonellaceae 

AJ010961, Anaeroarcus burkinensis, type sp., Veillonellaceae 

AF548373, Allisonella histaminiformans, type sp., Veillonellaceae 

X82500, Dialister pneumosintes, type sp., Veillonellaceae 

AY162469, Dialister invisus, Veillonellaceae 

AB370249, Dialister succinatiphilus, Veillonellaceae 

AY850119, Dialister propionicifaciens, Veillonellaceae 

AF473837, Dialister micraerophilus, Veillonellaceae 

FJ715930, Negativicoccus succinicivorans, type sp., Veillonellaceae 

DQ223730, Megasphaera paucivorans, Veillonellaceae 

DQ223729, Megasphaera sueciensis, Veillonellaceae 

L37040, Megasphaera cerevisiae, Veillonellaceae 

U95027, Megasphaera elsdenii, type sp., Veillonellaceae 

AF338413, Anaeroglobus geminatus, type sp., Veillonellaceae 

AF473834, Megasphaera micronuciformis, Veillonellaceae 

EF185167, Veillonella denticariosi, Veillonellaceae 

AY514996, Veillonella rodentium, Veillonellaceae 

AF439641, Veillonella atypica, Veillonellaceae 

AY995767, Veillonella parvula, type sp., Veillonellaceae 

EF108443, Veillonella rogosae, Veillonellaceae 

AF439639, Veillonella dispar, Veillonellaceae 

AY355140, Veillonella caviae, Veillonellaceae 

AF473836, Veillonella montpellierensis, Veillonellaceae 

AF186072, Veillonella criceti, Veillonellaceae 

AY355138, Veillonella ratti, Veillonellaceae 

EU096495, Veillonella magna, Veillonellaceae 

AAWL01000022, Thermosinus carboxydivorans, type sp., Veillonellaceae 

FJ169187, Sporolituus thermophilus, type sp., Veillonellaceae 

FR749939, Sporomusa paucivorans, Veillonellaceae 

AJ279801, Sporomusa sphaeroides, type sp., Veillonellaceae 

AJ279798, Sporomusa acidovorans, Veillonellaceae 

AJ279799, Sporomusa malonica, Veillonellaceae 

AJ279800, Sporomusa ovata, Veillonellaceae 

Y09976, Sporomusa silvacetica, Veillonellaceae 

AJ506191, Sporomusa aerivorans, Veillonellaceae 

AM158322, Sporomusa rhizae, Veillonellaceae 

X72865, Phascolarctobacterium faecium, type sp., Acidaminococcaceae 

X81137, Succiniclasticum ruminis, type sp., Acidaminococcaceae 

AB490811, Phascolarctobacterium succinatutens, Acidaminococcaceae 

X78017, Acidaminococcus fermentans, type sp., Acidaminococcaceae 

AF473835, Acidaminococcus intestini, Acidaminococcaceae 

AJ006980, Succinispira mobilis, type sp., Acidaminococcaceae 

Halobacteroidaceae (15) 

L37423, Halobacteroides elegans, Halobacteroidaceae 

Y14212, Halanaerobacter salinarius, Halobacteroidaceae 

X89075, Halanaerobacter lacunarum, Halobacteroidaceae 

GU265900, Halanaerobacter jeridensis, Halobacteroidaceae 

X89074, Halobacteroides halobius, type sp., Halobacteroidaceae 

EU327343, Halanaerobaculum tunisiense, type sp., Halobacteroidaceae 

AY014858, Halonatronum saccharophilum, type sp., Halobacteroidaceae 

AF152595, Orenia sivashensis, Halobacteroidaceae 

X89073, Orenia marismortui, type sp., Halobacteroidaceae 

Y18485, Orenia salinaria, Halobacteroidaceae 

X95817, Natroniella acetigena, type sp., Halobacteroidaceae 

GU452711, Natroniella sulfidigena, Halobacteroidaceae 

AF310247, Selenihalanaerobacter shriftii, type sp., Halobacteroidaceae 

HQ828140, Fuchsiella alkaliacetigena, type sp., Halobacteroidaceae 

CP002105, Acetohalobium arabaticum, type sp., Halobacteroidaceae 

Halanaerobiaceae (12) 

X89071, Halanaerobium acetethylicum, Halanaerobiaceae 

U86446, Halanaerobium kushneri, Halanaerobiaceae 

AB022034, Halanaerobium praevalens, type sp., Halanaerobiaceae 

X89070, Halanaerobium saccharolyticum subsp. senegalense, Halanaerobiaceae 

X89069, Halanaerobium saccharolyticum subsp. saccharolyticum, Halanaerobiaceae 

U76632, Halanaerobium congolense, Halanaerobiaceae 

AB023308, Halanaerobium fermentans, Halanaerobiaceae 

L39787, Halanaerobium lacusrosei, Halanaerobiaceae 

L22890, Halanaerobium salsuginis, Halanaerobiaceae 

X89072, Halocella cellulosilytica, type sp., Halanaerobiaceae 

AY965613, Halarsenatibacter silvermanii, type sp., Halanaerobiaceae 

L22016, Halothermothrix orenii, type sp., Halanaerobiaceae 

Cyanobacteria (9) 

AB115964, Crinalium epipsammum, type sp., Oscillatoriales 

HM748317, Iphinoe spelaeobios, type sp., Stigonematales 

HM748318, Loriellopsis cavernicola, type sp., Stigonematales 

Y18791, Halospirulina tapeticola, type sp., Oscillatoriales 

EF126149, Rubidibacter lacunae, type sp., Chroococcales 

AB045960, Planktothricoides raciborskii, type sp., Oscillatoriales 

Prochlorococcaceae (2) 

AF180967, Prochlorococcus marinus subsp. pastoris, Prochlorococcaceae 

AE017126, Prochlorococcus marinus subsp. marinus , type sp., Prochlorococcaceae 

AM709625, Prochlorothrix hollandica, type sp., Prochlorotrichaceae 

HM038000, Vampirovibrio chlorellavorus, type sp., Bdellovibrionaceae 

AY603000, Thermincola carboxydiphila, type sp., Peptococcaceae 

AY631277, Thermincola ferriacetica, Peptococcaceae 

Y11571, Desulfosporosinus hippei, Peptococcaceae 

AF076527, Desulfosporosinus meridiei, Peptococcaceae 

AJ493051, Desulfosporosinus auripigmenti, Peptococcaceae 

AJ582757, Desulfosporosinus lacus, Peptococcaceae 

DQ117470, Desulfosporosinus youngiae, Peptococcaceae

FJ951625, Desulfosporosinus acidiphilus, Peptococcaceae 

Y11570, Desulfosporosinus orientis, type sp., Peptococcaceae 

CP001336, Desulfitobacterium hafniense, Peptococcaceae 



U68528, Desulfitobacterium chlororespirans, Peptococcaceae 

L28946, Desulfitobacterium dehalogenans, type sp., Peptococcaceae 

AF297871, Desulfitobacterium metallireducens, Peptococcaceae 

EU711071, Desulfitobacterium aromaticivorans , Peptococcaceae 

U84497, Dehalobacter restrictus, type sp., Peptococcaceae 

Heliobacteriaceae (8) 

AB100837, Heliobacterium gestii, Heliobacteriaceae 

CP000930, Heliobacterium modesticaldum, Heliobacteriaceae 

AF249678, Heliobacterium sulfidophilum, Heliobacteriaceae 

AF249679, Heliobacterium undosum, Heliobacteriaceae 

AB100835, Heliobacillus mobilis, type sp., Heliobacteriaceae 

M11212, Heliobacterium chlorum, type sp., Heliobacteriaceae 

AF249680, Heliorestis baculata, Heliobacteriaceae 

AF079102, Heliorestis daurensis, type sp., Heliobacteriaceae 

Peptococcaceae 1 (2) 

Y18214, Desulfonispora thiosulfatigenes, type sp., Peptococcaceae 

X55797, Peptococcus niger, type sp., Peptococcaceae 

AY084078, Desulfotomaculum solfataricum, Peptococcaceae 

DQ208688, Desulfotomaculum thermosubterraneum, Peptococcaceae 

Y11569, Desulfotomaculum kuznetsovii, Peptococcaceae 

M96665, Desulfotomaculum australicum, Peptococcaceae 

U33455, Desulfotomaculum thermocisternum, Peptococcaceae 

DQ208689, Desulfovirgula thermocuniculi, type sp., Thermoanaerobacteraceae 

AJ294429, Desulfotomaculum thermobenzoicum subsp. thermobenzoicum, Peptococcaceae 

AY007190, Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum, Peptococcaceae 

Y11573, Desulfotomaculum thermoacetoxidans, Peptococcaceae 

AY548776, Desulfurispora thermophila, type sp., Peptococcaceae 

AB232785, Pelotomaculum isophthalicicum, Peptococcaceae 

AB091323, Pelotomaculum terephthalicicum, Peptococcaceae 

AY327251, Cryptanaerobacter phenolicus, type sp., Peptococcaceae 

X91170, Pelotomaculum schinkii, Peptococcaceae 

AB154390, Pelotomaculum propionicicum, Peptococcaceae 

AB035723, Pelotomaculum thermopropionicum, type sp., Peptococcaceae 

Y14845, Sporotomaculum hydroxybenzoicum, type sp., Peptococcaceae 

AB076610, Sporotomaculum syntrophicum, Peptococcaceae 

AF168365, Desulfotomaculum sapomandens, Peptococcaceae 

Z26315, Desulfotomaculum thermosapovorans, Peptococcaceae 

Y11576, Desulfotomaculum gibsoniae, Peptococcaceae 

AY548778, Desulfotomaculum alcoholivorax, Peptococcaceae 

DQ148942, Desulfotomaculum arcticum, Peptococcaceae 

AJ294428, Desulfotomaculum geothermicum, Peptococcaceae 

AY961415, Desulfotomaculum carboxydivorans, Peptococcaceae 

X62176, Desulfotomaculum nigrificans, type sp., Peptococcaceae 

EF081293, Desulfotomaculum hydrothermale, Peptococcaceae 

AF053929, Desulfotomaculum putei, Peptococcaceae 

X98407, Desulfotomaculum aeronauticum, Peptococcaceae 

Y11572, Desulfotomaculum ruminis, Peptococcaceae 

AF097024, Desulfotomaculum alkaliphilum, Peptococcaceae 

U88891, Desulfotomaculum halophilum, Peptococcaceae 

Y11566, Desulfotomaculum acetoxidans, Peptococcaceae 

Incertae Sedis XVI (3) 

AY673988, Carboxydocella sporoproducens, Unclassified Clostridiales 

AY061974, Carboxydocella thermautotrophica, type sp., Unclassified Clostridiales 

GU584133, Carboxydocella manganica, Unclassified Clostridiales 

Thermolithobacteria (2) 

DQ095862, Thermolithobacter carboxydivorans, Thermolithobacteraceae 

AF282253, Thermolithobacter ferrireducens, type sp., Thermolithobacteraceae 

Natranaerobiaceae (3) 

EU338490, Natranaerobius trueperi, Natranaerobiaceae 

EU338489, Natronovirga wadinatrunensis, type sp., Natranaerobiaceae 

DQ417202, Natranaerobius thermophilus, type sp., Natranaerobiaceae 

EF422412, Dethiobacter alkaliphilus, type sp., Syntrophomonadaceae 

EF679212, Sulfobacillus benefaciens, Unclassified Clostridiales 

AB089844, Sulfobacillus thermosulfidooxidans, type sp., Unclassified Clostridiales 

AY079150, Sulfobacillus sibiricus, Unclassified Clostridiales 

DQ124681, Sulfobacillus thermotolerans, Unclassified Clostridiales 

AB089842, Sulfobacillus acidophilus, Unclassified Clostridiales 

AP006840, Symbiobacterium thermophilum , type sp., Unclassified Clostridiales 

AF321086, Gelria glutamica, type sp., Thermoanaerobacteraceae 

U76363, Carboxydothermus ferrireducens, Thermoanaerobacteraceae 

CP000141, Carboxydothermus hydrogenoformans, type sp., Thermoanaerobacteraceae 

EF542810, Carboxydothermus siderophilus, Thermoanaerobacteraceae 

GQ324698, Carboxydothermus islandicus, Thermoanaerobacteraceae 

AB573433, Carboxydothermus pertinax, Thermoanaerobacteraceae 




EU386162, Syntrophaceticus schinkii, type sp., Thermoanaerobacterales 

AB020336, Thermacetogenium phaeum, type sp., Thermoanaerobacteraceae 

U82327, Moorella glycerini, Thermoanaerobacteraceae 

AF487538, Moorella mulderi, Thermoanaerobacteraceae 

GQ872425, Moorella humiferrea, Thermoanaerobacteraceae 

L09168, Moorella thermoautotrophica, Thermoanaerobacteraceae 

AY656675, Moorella thermoacetica, type sp., Thermoanaerobacteraceae 

Thermoanaerobacteraceae (24) 

L09163, Thermoanaerobacter acetoethylicus, Thermoanaerobacteraceae 

L09162, Thermoanaerobacter ethanolicus, type sp., Thermoanaerobacteraceae 

CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae 

L09161, Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacteraceae 

Y16940, Thermoanaerobacter sulfurophilus, Thermoanaerobacteraceae 

X92513, Thermoanaerobacter wiegelii, Thermoanaerobacteraceae 

AF120479, Thermoanaerobacter siderophilus, Thermoanaerobacteraceae 

L09160, Thermoanaerobacter kivui, Thermoanaerobacteraceae 

L09166, Thermoanaerobacter brockii subsp. finnii, Thermoanaerobacteraceae 

L09165, Thermoanaerobacter brockii subsp. brockii, Thermoanaerobacteraceae 

U14330, Thermoanaerobacter brockii subsp. lactiethylicus, Thermoanaerobacteraceae 

CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae 

Y11279, Thermoanaerobacter mathranii subsp. mathranii, Thermoanaerobacteraceae 

AY701758, Thermoanaerobacter mathranii subsp. alimentarius, Thermoanaerobacteraceae 

AJ250846, Thermoanaerobacter italicus, Thermoanaerobacteraceae 

L09167, Thermoanaerobacter thermocopriae, Thermoanaerobacteraceae 

AF234164, Thermoanaerobacter sulfurigignens, Thermoanaerobacteraceae

EF530067, Thermoanaerobacter uzonensis, Thermoanaerobacteraceae 

ABXP01000185, Caldanaerobacter subterraneus subsp. pacificus, Thermoanaerobacteraceae 

AE008691, Caldanaerobacter subterraneus subsp. tengcongensis, Thermoanaerobacteraceae 

AF212925, Caldanaerobacter subterraneus subsp. yonseiensis, Thermoanaerobacteraceae 

EF195126, Caldanaerobacter uzonensis, Thermoanaerobacteraceae 

CP001785, Ammonifex degensii, type sp., Thermoanaerobacteraceae 

EF554597, Ammonifex thiophilus, Thermoanaerobacteraceae 

EF530069, Caldanaerovirga acetigignens, type sp., Thermoanaerobacterales 

EU370564, Thermovorax subterraneus, type sp., Thermoanaerobacterales 

EU443728, Fervidicola ferrireducens, type sp., Syntrophomonadaceae 

AY703479, Thermosediminibacter litoriperuensis, Thermoanaerobacterales 

AY703478, Thermosediminibacter oceani, type sp., Thermoanaerobacterales 

AY033493, Thermovenabulum ferriorganovorum, type sp., Thermoanaerobacterales 

EU443729, Thermovenabulum gondwanense, Thermoanaerobacterales 

AB106353, Tepidanaerobacter syntrophicus, type sp., Thermoanaerobacteraceae 

Dictyoglomi (2) 

X69194, Dictyoglomus thermophilum, type sp., Dictyoglomaceae 

CP001251, Dictyoglomus turgidum, Dictyoglomaceae 

AB062280, Thermanaeromonas toyohensis, type sp., Thermoanaerobacteraceae 

AY772476, Caldicellulosiruptor acetigenus, Thermoanaerobacterales 

AJ004811, Caldicellulosiruptor kristjanssonii, Thermoanaerobacterales 

X82842, Caldicellulosiruptor lactoaceticus, Thermoanaerobacterales 

L09178, Caldicellulosiruptor saccharolyticus, type sp., Thermoanaerobacterales 

U80596, Caldicellulosiruptor owensensis, Thermoanaerobacterales 

EF100908, Caldicellulosiruptor hydrothermalis, Thermoanaerobacterales 

CP001393, Caldicellulosiruptor bescii, Thermoanaerobacterales 

EF100909, Caldicellulosiruptor kronotskyensis, Thermoanaerobacterales 

AB061441, Thermaerobacter nagasakiensis, Unclassified Clostridiales 

AF343566, Thermaerobacter subterraneus, Unclassified Clostridiales 

AY936496, Thermaerobacter litoralis, Unclassified Clostridiales 

AB454087, Thermaerobacter composti, Unclassified Clostridiales 

AB011495, Thermaerobacter marianensis, type sp., Unclassified Clostridiales 

Aquificae (28) 

Aquificaceae (11) 

AB120294, Hydrogenivirga caldilitoris, type sp., Aquificaceae 

AB235314, Hydrogenivirga okinawensis, Aquificaceae 

M83548, Aquifex pyrophilus, type sp., Aquificaceae 

AJ278895, Thermocrinis albus, Aquificaceae 

AJ005640, Thermocrinis ruber, type sp., Aquificaceae 

AM260555, Thermocrinis minervae, Aquificaceae 

Z30242, Hydrogenobacter hydrogenophilus, Aquificaceae 

CP002221, Hydrogenobacter thermophilus, type sp., Aquificaceae 

AB026268, Hydrogenobacter subterraneus, Aquificaceae 

GU233444, Thermothrix azorensis, Burkholderiaceae 

D16296, Hydrogenobaculum acidophilum, type sp., Aquificaceae 

Hydrogenothermaceae (9) 

AF528192, Sulfurihydrogenibium azorense, Hydrogenothermaceae 

AM259502, Sulfurihydrogenibium rodmanii, Hydrogenothermaceae 

AM778960, Sulfurihydrogenibium kristjanssonii, Hydrogenothermaceae 

AB071324, Sulfurihydrogenibium subterraneum, type sp., Hydrogenothermaceae 

AY686713, Sulfurihydrogenibium yellowstonense, Hydrogenothermaceae 

DQ989208, Venenivibrio stagnispumantis, type sp., Hydrogenothermaceae 

AF385630, Persephonella guaymasensis, Hydrogenothermaceae 

AF188332, Persephonella marina, type sp., Hydrogenothermaceae 

AB086419, Persephonella hydrogeniphila, Hydrogenothermaceae 

Desulfurobacteriaceae (7) 

AY263403, Thermovibrio ammonificans, Desulfurobacteriaceae 

AY268937, Thermovibrio guaymasensis, Desulfurobacteriaceae 

AB105049, Balnearium lithotrophicum, type sp., Desulfurobacteriaceae 

AJ316619, Thermovibrio ruber, type sp., Desulfurobacteriaceae 

AY268939, Desulfurobacterium atlanticum, Desulfurobacteriaceae 

AY268936, Desulfurobacterium pacificum, Desulfurobacteriaceae 

AJ001049, Desulfurobacterium thermolithotrophum, type sp., Desulfurobacteriaceae 

AB282756, Thermosulfidibacter takaii, type sp., Unclassified Aquificales 

Thermodesulfobacteria (7) 

Synergistetes (18) 

Thermotogae (39) 

X96725, Thermodesulfobacterium hveragerdense, Thermodesulfobacteriaceae 

AF334601, Thermodesulfobacterium thermophilum, Thermodesulfobacteriaceae 

AF418169, Thermodesulfobacterium commune, type sp., Thermodesulfobacteriaceae 

AF332514, Thermodesulfobacterium hydrogeniphilum, Thermodesulfobacteriaceae 

EF554596, Caldimicrobium rimae, type sp., Thermodesulfobacteriaceae 

AF393376, Thermodesulfatator indicus, type sp., Thermodesulfobacteriaceae 

EU435435, Thermodesulfatator atlanticus, Thermodesulfobacteriaceae 

AB428365, Caldisericum exile, type sp., Caldisericaceae 

AF234544, Dethiosulfovibrio marinus, Synergistaceae 

AF234542, Dethiosulfovibrio russensis, Synergistaceae 

AY005466, Dethiosulfovibrio acidaminovorans, Synergistaceae 

U52817, Dethiosulfovibrio peptidovorans, type sp., Synergistaceae 

EU719657, Dethiosulfovibrio salsuginis, Synergistaceae 

EF436500, Jonquetella anthropi, type sp., Synergistaceae 

EU309492, Pyramidobacter piscolens, type sp., Synergistaceae 

AF069287, Aminobacterium colombiense, type sp., Synergistaceae 

AF073521, Aminobacterium mobile, Synergistaceae 

CU463952, Cloacibacillus evryensis, type sp., Synergistaceae 

L08066, Synergistes jonesii, type sp., Synergistaceae 

CP001818, Thermanaerovibrio acidaminovorans, type sp., Synergistaceae 

FR733707, Thermanaerovibrio velox, Synergistaceae 

AY642589, Aminiphilus circumscriptus, type sp., Synergistaceae 

DQ071273, Thermovirga lienii, type sp., Synergistaceae 

FJ862996, Anaerobaculum hydrogeniformans, Synergistaceae 

U50711, Anaerobaculum thermoterrenum, type sp., Synergistaceae 

FR733692, Acetomicrobium flavidum, type sp., Bacteroidaceae 

Y08935, Coprothermobacter platensis, Thermodesulfobiaceae 

X69335, Coprothermobacter proteolyticus, type sp., Thermodesulfobiaceae 

AB077817, Thermodesulfobium narugense, type sp., Thermodesulfobiaceae 

Thermotogaceae (21) 

DQ647057, Thermosipho africanus, type sp., Thermotogaceae 

AB024932, Thermosipho japonicus, Thermotogaceae 

AB257289, Thermosipho globiformans, Thermotogaceae 

Z70248, Thermosipho melanesiensis, Thermotogaceae 

GQ292553, Thermosipho affectus, Thermotogaceae

Archaea (361) 

AJ577471, Thermosipho atlanticus, Thermotogaceae 

AJ272022, Thermosipho geolei, Thermotogaceae 

Z49117, Fervidobacterium gondwanense, Thermotogaceae 

EU851047, Fervidobacterium riparium, Thermotogaceae 

CP000771, Fervidobacterium nodosum, type sp., Thermotogaceae 

AY878719, Fervidobacterium changbaicum, Thermotogaceae 

M59176, Fervidobacterium islandicum, Thermotogaceae 

X80790, Thermotoga elfii, Thermotogaceae 

AF355615, Thermotoga lettingae, Thermotogaceae 

U22664, Thermotoga subterranea, Thermotogaceae 

U89768, Thermotoga hypogea, Thermotogaceae 

AB039769, Thermotoga thermarum, Thermotogaceae 

M21774, Thermotoga maritima, type sp., Thermotogaceae 

AB039768, Thermotoga neapolitana, Thermotogaceae 

AJ872269, Thermotoga petrophila, Thermotogaceae 

AJ872268, Thermotoga naphthophila, Thermotogaceae 

Euryarchaeota (313) 

AY800102, Petrotoga halophila, Thermotogaceae 

FR733705, Petrotoga miotherma, type sp., Thermotogaceae 

Y15479, Petrotoga mobilis, Thermotogaceae 

AY125964, Petrotoga mexicana, Thermotogaceae 

AJ311703, Petrotoga olearia, Thermotogaceae 

AJ311702, Petrotoga sibirica, Thermotogaceae 

FR850164, Defluviitoga tunisiensis, type sp., Thermotogaceae 

HM037999, Geotoga petraea, type sp., Thermotogaceae 

L10659, Geotoga subterranea, Thermotogaceae 

EU588727, Oceanotoga teriensis, type sp., Thermotogaceae 

AJ250439, Marinitoga camini, type sp., Thermotogaceae 

AF326121, Marinitoga piezophila, Thermotogaceae 

AB262395, Marinitoga okinawensis, Thermotogaceae 

FM253687, Marinitoga litoralis, Thermotogaceae 

AJ786363, Marinitoga hydrogenitolerans, Thermotogaceae 

EU980631, Kosmotoga olearia, type sp., Thermotogaceae 

EU276414, Thermococcoides shengliensis, Thermotogaceae 

AB530678, Kosmotoga arenicorallina, Thermotogaceae 

Halobacteria (139) 

AB489220, Halostagnicola kamekurae, Halobacteriaceae 

AM117571, Halostagnicola larsenii, type sp., Halobacteriaceae 

AB533255, Halostagnicola alkaliphila, Halobacteriaceae 

AM039978, Halovivax asiaticus, type sp., Halobacteriaceae 

AM269467, Halovivax ruber, Halobacteriaceae 

DQ367242, Haloterrigena longa, Halobacteriaceae 

AM231733, Natrinema ejinorense, Halobacteriaceae 

FJ545273, Haloterrigena daqingensis, Halobacteriaceae 

FN376859, Natronorubrum sediminis, Halobacteriaceae 

DQ535889, Natronorubrum sulfidifaciens, Halobacteriaceae 

Y14028, Natronorubrum bangense, type sp., Halobacteriaceae 

DQ205516, Natronorubrum aibiense, Halobacteriaceae 

AB005656, Natronorubrum tibetense, Halobacteriaceae 

D14123, Natrialba asiatica, type sp., Halobacteriaceae 

D14124, Natrialba taiwanensis, Halobacteriaceae 

AF251941, Natrialba aegyptia, Halobacteriaceae 

AF262026, Natrialba hulunbeirensis, Halobacteriaceae 

X72495, Natrialba magadii, Halobacteriaceae 

AJ004806, Natrialba chahannaoensis, Halobacteriaceae 

AJ002949, Natrinema pallidum, Halobacteriaceae 

AJ002947, Natrinema pellirubrum, type sp., Halobacteriaceae 

D14125, Halorubrum trapanicum, Halobacteriaceae 

AY208972, Natrinema altunense, Halobacteriaceae 

AB023426, Natrinema versiforme, Halobacteriaceae 

AB289741, Natrinema gari, Halobacteriaceae 

EF077633, Haloterrigena jeotgali, Halobacteriaceae 

AF115478, Haloterrigena thermotolerans, Halobacteriaceae 

AY820137, Haloterrigena saccharevitans, Halobacteriaceae 

AM942763, Haloterrigena salina, Halobacteriaceae 

CP001860, Haloterrigena turkmenica, type sp., Halobacteriaceae 

AM285297, Haloterrigena hispanica, Halobacteriaceae 

DQ367241, Haloterrigena limicola, Halobacteriaceae 

AB125106, Natronolimnobius baerhuensis, type sp., Halobacteriaceae 

AB125108, Natronolimnobius innermongolicus, Halobacteriaceae 

AF333759, Halopiger aswanensis , Halobacteriaceae 

AM268114, Halopiger xanaduensis, type sp., Halobacteriaceae 

AF333760, Halobiforma haloterrestris, type sp., Halobacteriaceae 

AY277582, Halobiforma lacisalsi, Halobacteriaceae 

AB045012, Halobiforma nitratireducens, Halobacteriaceae 

D87970, Natronobacterium gregoryi, type sp., Halobacteriaceae 

EF077631, Natronococcus jeotgali, Halobacteriaceae 

Z28378, Natronococcus occultus, type sp., Halobacteriaceae 

D43628, Natronococcus amylolyticus, Halobacteriaceae 

AB501361, Natronoarchaeum mannanilyticum, type sp., Halobacteriaceae 

JF293279, Haloarchaeobius iranensis, type sp., Halobacteriaceae 

JF293278, Haloarchaeobius iranensis, type sp., Halobacteriaceae 

AY243109, Halococcus qingdaonensis, Halobacteriaceae 

AB220647, Halococcus thailandensis, Halobacteriaceae 

D11106, Halococcus morrhuae, type sp., Halobacteriaceae 

AJ420376, Halococcus dombrowskii, Halobacteriaceae 

DQ017835, Halococcus hamelinensis, Halobacteriaceae 

AB004876, Halococcus saccharolyticus, Halobacteriaceae 

AB004877, Halococcus salifodinae, Halobacteriaceae 

EF077632, Halalkalicoccus jeotgali, Halobacteriaceae 

AF435112, Halalkalicoccus tibetensis, type sp., Halobacteriaceae 

EF660747, Haladaptatus cibarius, Halobacteriaceae 

EU887285, Haladaptatus litoreus, Halobacteriaceae 

DQ344973, Haladaptatus paucihalophilus, type sp., Halobacteriaceae 

D13379, Halorubrum sodomense, Halobacteriaceae 

AB090169, Halorubrum terrestre, Halobacteriaceae 

D63572, Halorubrum distributum, Halobacteriaceae 

EF028067, Halorubrum litoreum, Halobacteriaceae 

L00922, Halorubrum coriense, Halobacteriaceae 

EF139654, Halorubrum californiense, Halobacteriaceae 

AM048786, Halorubrum chaoviator, Halobacteriaceae 

DQ118426, Halorubrum ezzemoulense, Halobacteriaceae 

AY510707, Halorubrum xinjiangense, Halobacteriaceae 

FR870448, Halorubrum tebenquichense, Halobacteriaceae 

AM491830, Halorubrum ejinorense, Halobacteriaceae 

DQ355793, Halorubrum arcis, Halobacteriaceae 

U17364, Halorubrum saccharovorum, type sp., Halobacteriaceae 

DQ355813, Halorubrum aidingense, Halobacteriaceae 

AM900832, Halorubrum kocurii, Halobacteriaceae

0.01 

Methanomicrobia (71) 

U17365, Halorubrum lacusprofundi, Halobacteriaceae 

DQ355814, Halorubrum lipolyticum, Halobacteriaceae 

AM235786, Halorubrum orientale, Halobacteriaceae 

AY149598, Halorubrum tibetense, Halobacteriaceae 

AM268115, Halorubrum aquaticum, Halobacteriaceae 

EF077639, Halorubrum cibi, Halobacteriaceae 

AY510708, Halorubrum alkaliphilum, Halobacteriaceae 

D87972, Halorubrum vacuolatum, Halobacteriaceae 

JF979130, Halopenitus persicus, type sp., Halobacteriaceae 

AY498641, Halonotius pteroides, type sp., Halobacteriaceae 

GQ282625, Haloplanus aerogenes, Halobacteriaceae 

DQ417339, Haloplanus natans, type sp., Halobacteriaceae 

EU931578, Haloplanus vescus, Halobacteriaceae 

EU887283, Halogranum rubrum, type sp., Halobacteriaceae 

FN594944, Halogranum salarium, Halobacteriaceae 

GQ282623, Halogranum amylolyticum, Halobacteriaceae 

GQ282624, Halogranum gelatinilyticum, Halobacteriaceae 

AB037474, Haloferax alexandrinus, Halobacteriaceae 

AY425724, Haloferax volcanii, type sp., Halobacteriaceae 

D14128, Haloferax denitrificans, Halobacteriaceae 

D13378, Haloferax gibbonsii, Halobacteriaceae 

AB258305, Haloferax prahovense, Halobacteriaceae 

AB081732, Haloferax lucentense, Halobacteriaceae 

D11107, Haloferax mediterranei, Halobacteriaceae 

DQ860980, Haloferax mucosum, Halobacteriaceae 

AY458601, Haloferax sulfurifontis, Halobacteriaceae 

DQ860977, Haloferax elongans, Halobacteriaceae 

AY838278, Haloferax larsenii, Halobacteriaceae 

EU887284, Halopelagius inordinatus, type sp., Halobacteriaceae 

GQ282620, Halobellus clavatus, type sp., Halobacteriaceae 

HQ451075, Halobellus salinus, Halobacteriaceae 

GU208828, Halobellus limi, Halobacteriaceae 

AY676200, Haloquadratum walsbyi, type sp., Halobacteriaceae 

AF002984, Halogeometricum borinquense, type sp., Halobacteriaceae 

EU887286, Halogeometricum rufum, Halobacteriaceae 

EF055454, Halosarcina pallida, type sp., Halobacteriaceae 

EU931577, Halosarcina limi, Halobacteriaceae 

GU208826, Halolamina pelagica, type sp., Halobacteriaceae 

AB285020, Halobacterium piscisalsi, Halobacteriaceae 

AJ496185, Halobacterium salinarum, type sp., Halobacteriaceae 

DQ256409, Halobacterium jilantaiense, Halobacteriaceae 

AJ548827, Halobacterium noricense, Halobacteriaceae 

AB454051, Salarchaeum japonicum, type sp., Halobacteriaceae 

AB371717, Halarchaeum acidiphilum, type sp., Halobacteriaceae 

HM159611, Halobaculum gomorrense, type sp., Halobacteriaceae 

AB072815, Halosimplex carlsbadense, type sp., Halobacteriaceae 

HQ197980, Halovenus aranensis, type sp., Halobacteriaceae 

AY596297, Haloarcula marismortui, Halobacteriaceae 

EF645688, Haloarcula vallismortis, type sp., Halobacteriaceae 

AB010964, Haloarcula quadrata, Halobacteriaceae 

AB090167, Haloarcula hispanica, Halobacteriaceae 

EF645681, Haloarcula argentinensis, Halobacteriaceae 

DQ826513, Haloarcula amylolytica, Halobacteriaceae 

EF645685, Haloarcula japonica, Halobacteriaceae 

FJ429317, Haloarcula salaria, Halobacteriaceae 

EF533994, Halomicrobium katesii, Halobacteriaceae 

FJ429313, Haloarcula tradensis, Halobacteriaceae 

AY596297, Haloarcula marismortui, Halobacteriaceae 

EF645690, Halomicrobium mukohataei, type sp., Halobacteriaceae 

HM063952, Halomicrobium zhouii, Halobacteriaceae 

EF127229, Halorhabdus tiamatea, Halobacteriaceae 

AF071880, Halorhabdus utahensis, type sp., Halobacteriaceae 

GQ282621, Halorientalis regularis, type sp., Halobacteriaceae 

AY498645, Natronomonas moolapensis, Halobacteriaceae 

CR936257, Natronomonas pharaonis , type sp., Halobacteriaceae 

AB519798, Halomarina oriensis, type sp., Halobacteriaceae 

Methanomicrobiales (37) 

AF347025, Methanocalculus chunghsingensis, Unclassified Methanomicrobiales 

AF033672, Methanocalculus halotolerans, type sp., Unclassified Methanomicrobiales 

AF411470, Methanocalculus taiwanensis, Unclassified Methanomicrobiales 

AB008853, Methanocalculus pumilus, Unclassified Methanomicrobiales 

Methanocorpusculaceae (4) 

AY196676, Methanocorpusculum bavaricum, Methanocorpusculaceae 

M59147, Methanocorpusculum parvum, type sp., Methanocorpusculaceae 

AY260436, Methanocorpusculum labreanum, Methanocorpusculaceae 

FR749947, Methanocorpusculum sinense, Methanocorpusculaceae 

Y16428, Methanofollis liminatans, Methanomicrobiaceae 

AF095272, Methanofollis tationis, type sp., Methanomicrobiaceae 

AB371073, Methanofollis ethanolicus, Methanomicrobiaceae 

AF262035, Methanofollis aquaemaris, Methanomicrobiaceae 

AY186542, Methanofollis formosanus, Methanomicrobiaceae 

Methanospirillaceae (2) 

AY196683, Methanospirillum hungatei, type sp., Methanospirillaceae 

AB517986, Methanospirillum lacunae, Methanospirillaceae 

AB447467, Methanolinea mesophila, Methanoregulaceae 

DQ282124, Methanoregula boonei, type sp., Methanoregulaceae 

AB479390, Methanoregula formicica, Methanoregulaceae 

AB162774, Methanolinea tarda, type sp., Methanoregulaceae 

EU156000, Methanosphaerula palustris, type sp., Methanoregulaceae 

FJ977567, Methanoculleus hydrogenitrophicus, Methanomicrobiaceae 

AB065297, Methanoculleus thermophilus, Methanomicrobiaceae 

AY196674, Methanoculleus bourgensis, type sp., Methanomicrobiaceae 

M59134, Methanoculleus marisnigri, Methanomicrobiaceae 

AF531178, Methanoculleus submarinus, Methanomicrobiaceae 

AB038795, Methanoculleus chikugoensis, Methanomicrobiaceae 

Y16382, Methanoculleus palmolei, Methanomicrobiaceae 

DQ787476, Methanoculleus receptaculi, Methanomicrobiaceae 

Methanomicrobiaceae (9) 

U76631, Methanoplanus petrolearius, Methanomicrobiaceae 

AY196678, Methanolacinia paynteri, type sp., Methanomicrobiaceae 

M59142, Methanomicrobium mobile, type sp., Methanomicrobiaceae 

FR733674, Methanoplanus endosymbiosus, Methanomicrobiaceae 

M59143, Methanoplanus limicola, type sp., Methanomicrobiaceae 

FR733663, Methanogenium cariaci, type sp., Methanomicrobiaceae 

FR749908, Methanogenium frigidum, Methanomicrobiaceae 

DQ177344, Methanogenium marinum, Methanomicrobiaceae 

M59131, Methanogenium organophilum, Methanomicrobiaceae

Methanosarcinales (31) 

Archaeoglobi (8) 

Methanosarcinaceae (26) 

AJ012094, Methanosarcina barkeri, Methanosarcinaceae 

FR733661, Methanosarcina vacuolata, Methanosarcinaceae 

M59140, Methanosarcina thermophila, Methanosarcinaceae 

M59137, Methanosarcina acetivorans, Methanosarcinaceae 

FR733698, Methanosarcina siciliae, Methanosarcinaceae 

AJ012095, Methanosarcina mazei, Methanosarcinaceae 

AB288262, Methanosarcina horonobensis, Methanosarcinaceae 

AF432127, Methanosarcina lacustris, Methanosarcinaceae 

AJ238648, Methanosarcina baltica, Methanosarcinaceae 

AJ012742, Methanosarcina semesiae, Methanosarcinaceae 

AJ238002, Methanimicrococcus blatticola, type sp., Methanosarcinaceae 

FR733684, Methanolobus bombayensis, Methanosarcinaceae 

U20155, Methanolobus vulcani, Methanosarcinaceae 

AB370245, Methanolobus profundi, Methanosarcinaceae 

U20154, Methanolobus taylorii, Methanosarcinaceae 

U20152, Methanolobus oregonensis, Methanosarcinaceae 

EU711413, Methanolobus zinderi, Methanosarcinaceae 

AF120163, Methanomethylovorans hollandica, type sp., Methanosarcinaceae 

AY672821, Methanomethylovorans thermophila, Methanosarcinaceae 

AY941801, Methanococcoides alaskense, Methanosarcinaceae 

CP000300, Methanococcoides burtonii , Methanosarcinaceae 

FR733669, Methanococcoides methylutens, type sp., Methanosarcinaceae 

FR733671, Methanohalophilus halophilus, Methanosarcinaceae 

M59133, Methanohalophilus mahii, type sp., Methanosarcinaceae 

AY290717, Methanohalophilus portucalensis, Methanosarcinaceae 

FJ224366, Methanosalsum zhilinae, type sp., Methanosarcinaceae 

FR733675, Methanohalobium evestigatum, type sp., Methanosarcinaceae 

CP002565, Methanosaeta concilii, type sp., Methanosaetaceae 

AB071701, Methanosaeta thermophila, Methanosaetaceae 

AY817738, Methanosaeta harundinacea, Methanosaetaceae 

DQ787474, Methermicoccus shengliensis, type sp., Methermicoccaceae 

Methanocellales (3) 

AB196288, Methanocella paludicola, type sp., Methanocellaceae 

JN048683, Methanocella conradii, Methanocellaceae 

AM114193, Methanocella arvoryzae, Methanocellaceae 

AJ299219, Archaeoglobus profundus, Archaeoglobaceae 

AF220166, Ferroglobus placidus, type sp., Archaeoglobaceae 

AE000782, Archaeoglobus fulgidus , type sp., Archaeoglobaceae 

AF220165, Geoglobus ahangari, type sp., Archaeoglobaceae 

FJ216404, Geoglobus acetivorans, Archaeoglobaceae 

AB274307, Archaeoglobus infectus, Archaeoglobaceae 

AF418181, Archaeoglobus veneficus, Archaeoglobaceae 

FJ810190, Archaeoglobus sulfaticallidus, Archaeoglobaceae 

Methanobacteria (40) 

AB542742, Methanobacterium petrolearium, Methanobacteriaceae 

AB368917, Methanobacterium kanagiense, Methanobacteriaceae 

AB542743, Methanobacterium ferruginis, Methanobacteriaceae 

X99044, Methanobacterium subterraneum, Methanobacteriaceae 

AF169245, Methanobacterium formicicum, type sp., Methanobacteriaceae 

AF093061, Methanobacterium palustre, Methanobacteriaceae 

DQ649335, Methanobacterium alcaliphilum, Methanobacteriaceae 

AF233586, Methanobacterium congolense, Methanobacteriaceae 

HQ110085, Methanobacterium lacus, Methanobacteriaceae 

AF095261, Methanobacterium ivanovii, Methanobacteriaceae 

DQ517520, Methanobacterium arcticum, Methanobacteriaceae 

EF016285, Methanobacterium veterum, Methanobacteriaceae 

AY196657, Methanobacterium bryantii, Methanobacteriaceae 

AF028690, Methanobacterium oryzae, Methanobacteriaceae 

AY350742, Methanobacterium beijingense, Methanobacteriaceae 

U62533, Methanobrevibacter curvatus, Methanobacteriaceae 

U82322, Methanobrevibacter filiformis, Methanobacteriaceae 

U41095, Methanobrevibacter cuticularis, Methanobacteriaceae 

AY196665, Methanobrevibacter arboriphilus, Methanobacteriaceae 

AF242652, Methanobrevibacter acididurans, Methanobacteriaceae 

U55238, Methanobrevibacter gottschalkii, Methanobacteriaceae 

U55236, Methanobrevibacter thaueri, Methanobacteriaceae 

AY196673, Methanobrevibacter millerae, Methanobacteriaceae 

U55233, Methanobrevibacter smithii, Methanobacteriaceae 

U55237, Methanobrevibacter woesei, Methanobacteriaceae 

AY615201, Methanobrevibacter olleyae, Methanobacteriaceae 

AY196666, Methanobrevibacter ruminantium, type sp., Methanobacteriaceae 

U55240, Methanobrevibacter wolinii, Methanobacteriaceae 

CP000102, Methanosphaera stadtmanae , type sp., Methanobacteriaceae 

AY386124, Methanobacterium aarhusense, Methanobacteriaceae 

EU333914, Methanobacterium flexile, Methanobacteriaceae 

EU366499, Methanobacterium movens, Methanobacteriaceae 

X99047, Methanothermobacter thermoflexus, Methanobacteriaceae 

X99048, Methanothermobacter thermophilus, Methanobacteriaceae 

X99046, Methanothermobacter defluvii, Methanobacteriaceae 

AY196660, Methanothermobacter thermautotrophicus, type sp., Methanobacteriaceae 

AB104858, Methanothermobacter wolfeii, Methanobacteriaceae 

X15364, Methanothermobacter marburgensis, Methanobacteriaceae 

HQ283273, Methanothermobacter crinale, Methanobacteriaceae 

CP002278, Methanothermus fervidus, type sp., Methanothermaceae 

Thermococci (33) 

AY099173, Thermococcus barossii, Thermococcaceae 

AY099174, Thermococcus celer, type sp., Thermococcaceae 

AY099179, Thermococcus hydrothermalis, Thermococcaceae 

AB107767, Thermococcus coalescens, Thermococcaceae 

AF394925, Thermococcus thioreducens, Thermococcaceae 

AB107768, Thermococcus celericrescens, Thermococcaceae 

AY099185, Thermococcus siculi, Thermococcaceae 

AJ310754, Thermococcus atlanticus, Thermococcaceae 

AY099186, Thermococcus stetteri, Thermococcaceae 

AY099176, Thermococcus fumicolans, Thermococcaceae 

AF479014, Thermococcus gammatolerans, Thermococcaceae 

D38650, Thermococcus kodakarensis, Thermococcaceae 

AY099183, Thermococcus peptonophilus, Thermococcaceae 

AY099187, Thermococcus waiotapuensis, Thermococcaceae 

U76534, Thermococcus zilligii, Thermococcaceae 

AY099182, Thermococcus pacificus, Thermococcaceae 

AY099170, Thermococcus acidaminovorans, Thermococcaceae 

AY099184, Thermococcus profundus, Thermococcaceae

AY099177, Thermococcus gorgonarius, Thermococcaceae 

AY099178, Thermococcus guaymasensis, Thermococcaceae 

AE009950, Pyrococcus furiosus, type sp., Thermococcaceae 

AY099169, Pyrococcus horikoshii, Thermococcaceae 

AY099168, Pyrococcus glycovorans, Thermococcaceae 

AY099175, Thermococcus chitonophagus, Thermococcaceae 

EU682399, Pyrococcus yayanosii, Thermococcaceae 

AY099172, Thermococcus barophilus, Thermococcaceae 

Y08384, Thermococcus aggregans, Thermococcaceae 

AY099171, Thermococcus aegaeus, Thermococcaceae 

AJ238992, Thermococcus sibiricus, Thermococcaceae 

FR749899, Thermococcus litoralis, Thermococcaceae 

AB055121, Thermococcus alcaliphilus, Thermococcaceae 

AB019239, Palaeococcus ferrophilus, type sp., Thermococcaceae 

AY134472, Palaeococcus helgesonii, Thermococcaceae 

Methanococci (12) 

Thermoplasmata (8) 

Ferroplasmaceae (3) 

AM943980, Acidiplasma aeolicum, type sp., Ferroplasmaceae 

AY907888, Acidiplasma cupricumulans, Ferroplasmaceae 

AJ224936, Ferroplasma acidiphilum, type sp., Ferroplasmaceae 

Picrophilaceae (2) 

X84901, Picrophilus oshimae, type sp., Picrophilaceae 

AE017261, Picrophilus torridus , Picrophilaceae 

Thermoplasmataceae (2) 

M38637, Thermoplasma acidophilum, type sp., Thermoplasmataceae 

AJ299215, Thermoplasma volcanium, Thermoplasmataceae 

AB269873, Thermogymnomonas acidicola, type sp., Unclassified Thermoplasmatales 

HQ896499, Methanomassiliicoccus luminyensis, type sp., Unclassified Methanomicrobia 

DQ195164, Methanococcus aeolicus, Methanococcaceae 

AB057722, Methanothermococcus okinawensis, Methanococcaceae 

AY196675, Methanococcus vannielii, Methanococcaceae 

M59128, Methanothermococcus thermolithotrophicus, type sp., Methanococcaceae 

AB100884, Methanotorris formicicus, Methanocaldococcaceae 

CP002737, Methanotorris igneus, Methanocaldococcaceae 

Methanocaldococcaceae (6) 

AF547621, Methanocaldococcus indicus, Methanocaldococcaceae 

AF025822, Methanocaldococcus infernus, Methanocaldococcaceae 

FJ766848, Methanocaldococcus villosus, Methanocaldococcaceae 

AF051404, Methanocaldococcus vulcanius, Methanocaldococcaceae 

L77117, Methanocaldococcus jannaschii , type sp., Methanocaldococcaceae 

AF056938, Methanocaldococcus fervens, Methanocaldococcaceae 

AE009439, Methanopyrus kandleri, type sp., Methanopyraceae 

Crenarchaeota (48) 

Sulfolobaceae (16) 

X90482, Metallosphaera prunae, Sulfolobaceae 

D26491, Metallosphaera sedula, type sp., Sulfolobaceae 

D86414, Metallosphaera hakonensis, Sulfolobaceae 

FN796482, Metallosphaera cuprina, Sulfolobaceae 

D26489, Acidianus brierleyi, Sulfolobaceae 

D85506, Acidianus ambivalens, Sulfolobaceae 

D85505, Acidianus infernus, type sp., Sulfolobaceae 

AY907891, Acidianus sulfidivorans, Sulfolobaceae 

AB022438, Sulfolobus tokodaii, Sulfolobaceae 

D85507, Sulfurisphaera ohwakuensis, type sp., Sulfolobaceae 

AB010957, Sulfolobus yangmingensis, Sulfolobaceae 

D14876, Sulfolobus acidocaldarius, type sp., Sulfolobaceae 

D85520, Stygiolobus azoricus, type sp., Sulfolobaceae 

D85519, Sulfolobus metallicus, Sulfolobaceae 

M32504, Sulfolobus shibatae, Sulfolobaceae 

D26490, Sulfolobus solfataricus, Sulfolobaceae 

Thermoproteales (11) 

Thermoproteaceae (10) 

AJ277124, Pyrobaculum arsenaticum, Thermoproteaceae 

AB087402, Pyrobaculum oguniense, Thermoproteaceae 

CP001014, Thermoproteus neutrophilus, Thermoproteaceae 

L07510, Pyrobaculum aerophilum, Thermoproteaceae 

AB078332, Pyrobaculum calidifontis, Thermoproteaceae 

M35966, Thermoproteus tenax, type sp., Thermoproteaceae 

AB063630, Vulcanisaeta distributa, type sp., Thermoproteaceae 

AB063645, Vulcanisaeta souniana, Thermoproteaceae 

AB013926, Caldivirga maquilingensis, type sp., Thermoproteaceae 

AB005296, Thermocladium modestius, type sp., Thermoproteaceae 

X14835, Thermofilum pendens, type sp., Thermofilaceae 

Desulfurococcales and Fervidicoccales (11) 

AY264344, Desulfurococcus fermentans, Desulfurococcaceae 

EU167539, Desulfurococcus kamchatkensis, Desulfurococcaceae 

CP002363, Desulfurococcus mucosus, type sp., Desulfurococcaceae 

X99556, Thermosphaera aggregans, type sp., Desulfurococcaceae 

X98064, Sulfophobococcus zilligii, type sp., Desulfurococcaceae 

AJ012645, Staphylothermus hellenicus, Desulfurococcaceae 

X99560, Staphylothermus marinus, type sp., Desulfurococcaceae 

EF552404, Fervidicoccus fontis, type sp., Fervidicoccaceae 

X99562, Ignicoccus islandicus, type sp., Desulfurococcaceae 

AJ271794, Ignicoccus pacificus, Desulfurococcaceae 

AJ318042, Ignicoccus hospitalis, Desulfurococcaceae 

AB109559, Aeropyrum camini, Desulfurococcaceae 

D83259, Aeropyrum pernix, type sp., Desulfurococcaceae 

X99554, Thermodiscus maritimus, type sp., Desulfurococcaceae 

Y07784, Stetteria hydrogenophila, type sp., Desulfurococcaceae 

Acidilobales (3) 

AF191225, Acidilobus aceticus, type sp., Acidilobaceae 

AY350586, Acidilobus saccharovorans, Acidilobaceae 

AB087499, Caldisphaera lagunensis, type sp., Caldisphaeraceae 

DQ060321, Ignisphaera aggregans, type sp., Desulfurococcaceae 

Pyrodictiaceae (2) 

CP000493, Hyperthermus butylicus , type sp., Pyrodictiaceae 

M21087, Pyrodictium occultum, type sp., Pyrodictiaceae

The All-Species Living Tree (Release LTPs111): 16S rRNA ... - Silva

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