Supplementary table 7: Type Species not covered by the ALL ... - Silva

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Acetoanaerobium noterae orphan Sleat et al. 1985, sp. nov. (Type species of the
genus).
Acetofilamentum rigidum orphan Dietrich et al. 1989, sp. nov. (Type species of
the genus).
Acetomicrobium flavidum orphan Soutschek et al. 1985, sp. nov. (Type species of
the genus).
Acetothermus paucivorans orphan Dietrich et al. 1988, sp. nov. (Type species of
the genus).
Achromatium oxaliferum orphan Schewiakoff 1893, species. (Type species of the
genus).
Advenella incenata below Parc Coenye et al. 2005, sp. nov. (Type species of
the genus).
Aegyptianella pullorum orphan Carpano 1929, species. (Type species of the
genus).
Aerococcus viridans below Parc Williams et al. 1953, species. (Type species of
the genus).
Agitococcus lubricus orphan Franzmann and Skerman 1981, sp. nov. (Type
species of the genus).
Albibacter methylovorans below Parc Doronina et al. 2001, sp. nov. (Type species of
the genus).
Allochromatium vinosum orphan (Ehrenberg 1838) Imhoff et al. 1998, comb.
nov. (Type species of the genus).
Aminomonas paucivorans below Parc Baena et al. 1999, sp. nov. (Type species of the
genus).
Ammonifex degensii below Parc Huber and Stetter 1996, sp. nov. (Type species
of the genus).
Anaerobranca horikoshii below Parc Engle et al. 1995, sp. nov. (Type species of the
genus).
Anaerorhabdus furcosa orphan corrig. (Veillon and Zuber 1898) Shah and
Collins 1986, comb. nov. (Type species of the
genus).
Anaplasma marginale orphan Theiler 1910, species. (Type species of the
genus).
Ancalochloris perfilievii orphan Gorlenko and Lebedeva 1971, species. (Type
species of the genus).
Ancalomicrobium adetum orphan Staley 1968, species. (Type species of the
genus).
Angiococcus disciformis below Parc (Thaxter 1904) Hook et al. 1980, comb. nov.
(Type species of the genus).
Aquabacter spiritensis orphan Irgens et al. 1993, sp. nov. (Type species of
the genus).
strain NOT-3 = ATCC 35199.
strain MN = DSM 20769.
strain ATCC 43122 = DSM 20664 = LMG
6941.
strain TN = DSM 20768.
----
strain CCUG 45225 = LMG 22250.
----
strain ATCC 11563 = CCUG 4311 = CIP
54.145 = DSM 20340 = HAMBI 1583 = IFO
(now NBRC) 12219 = JCM 20461 = LMG
17931 = NCAIM B.01070 = NCTC 8251.
strain DSM 5822 = UQM 1981.
strain DM10 = DSM 13819 = VKM B-2236.
strain D = ATCC 17899 = DSM 180.
strain GLU-3 = ATCC BAA-6 = DSM 12260.
strain KC4 = DSM 10501
strain JW/YL-138 = ATCC 700319 = DSM
9786.
strain ATCC 25662 = VPI 3253.
----
----
strain ATCC 23632 = DSM 4722 = JCM
21375 = VKM B-1375.
strain CMU-1 = ATCC 33172.
strain SPL-1 = ATCC 43981 = DSM 9035 =
LMG 8611.
1

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Aurantimonas coralicida below Parc Denner et al. 2003, sp. nov. (Type species of
the genus).
strain WP1 = CIP 107386 = DSM 14790.
Bactoderma alba orphan Tepper and Korshunova 1973, species. (Type
species of the genus).
----
Bergeyella zoohelcum below Parc (Holmes et al. 1987) Vandamme et al. 1994, strain D658 = ATCC 43767 = CCUG 12568 =
comb. nov. (Type species of the genus). CCUG 30535 = CIP 103041 = IFO (now
NBRC) 16014 = JCM 21249 = LMG 8351 =
LMG 12996 = NCTC 11660.
Blastobacter henricii orphan Zavarzin 1961, species. (Type species of the
genus).
----
Blattabacterium cuenoti orphan (Mercier 1906) Hollande and Favre 1931,
species. (Type species of the genus).
----
Borrelia anserina orphan (Sakharoff 1891) Bergey et al. 1925, species.
(Type species of the genus).
----
Brevinema andersonii below Parc Defosse et al. 1995, sp. nov. (Type species of
the genus).
strain CT11616 = ATCC 43811.
Buchnera aphidicola orphan Munson et al. 1991, sp. nov. (Type species of
the genus).
----
Caldanaerobacter subterraneus subsp. subterraneus below Living Tree (Fardeau et al. 2000) Fardeau et al. 2004, strain ATCC BAA-225 = CNCM I-2383 = DSM
subsp. nov.
13054 = SEBR 7858.
Carbophilus carboxidus orphan (ex Nozhevnikova and Zavarzin 1974) Meyer et strain Z-1171 = ATCC 51424 = CIP 105722
al. 1994, nom. rev., comb. nov. (Type species
of the genus).
= DSM 1086.
Carboxydothermus hydrogenoformans below Ref Svetlichny et al. 1991, sp. nov. (Type species
of the genus).
strain Z-2901 = ATCC BAA-161 = DSM 6008.
Catenococcus thiocycli below Ref corrig. Sorokin 1994, sp. nov. (Type species of strain TG 5-3 = ATCC 51228 = DSM 9165 =
the genus).
LMD 92.12.
Cellulophaga lytica below Living Tree (Lewin 1969) Johansen et al. 1999, comb. nov. strain ATCC 23178 = CIP 103822 = DSM
(Type species of the genus).
7489 = IFO (now NBRC) 14961 = JCM 8516
= LMG 1344 = VKM B-1433.
Chloronema giganteum orphan Dubinina and Gorlenko 1975, species. (Type
species of the genus).
----
Chondromyces crocatus orphan Berkeley and Curtis 1874, species. (Type
species of the genus).
strain TC 601.
Clevelandina reticulitermitidis orphan Bermudes et al. 1988, sp. nov. (Type species of
the genus).
----
Coxiella burnetii orphan (Derrick 1939) Philip 1948, species. (Type
species of the genus).
strain ATCC VR-615.
Crenothrix polyspora orphan Cohn 1870, species. (Type species of the
genus).
----
Cristispira pectinis orphan Gross 1910, species. (Type species of the
genus).
----
2

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Desulfurococcus mucosus orphan Zillig and Stetter 1983, sp. nov. (Type species
of the genus).
Dichotomicrobium thermohalophilum orphan Hirsch and Hoffman 1989, sp. nov. (Type
species of the genus).
Diplocalyx calotermitidis orphan (ex Gharagozlou 1968) Bermudes et al. 1988,
sp. nov., nom. rev. (Type species of the
genus).
Ehrlichia canis orphan (Donatien and Lestoquard 1935) Moshkovski
1945, species. (Type species of the genus).
Eikenella corrodens below Parc (Eiken 1958) Jackson and Goodman 1972,
species. (Type species of the genus).
Entomoplasma ellychniae below Parc (Tully et al. 1989) Tully et al. 1993, comb. nov.
(Type species of the genus).
Ewingella americana orphan Grimont et al. 1984, sp. nov. (Type species of
the genus).
Fervidobacterium nodosum below Parc Patel et al. 1985, sp. nov. (Type species of the
genus).
Frankia alni orphan (Woronin 1866) Von Tubeuf 1895, species.
(Type species of the genus).
Gallionella ferruginea orphan Ehrenberg 1838, species. (Type species of the
genus).
Gemmiger formicilis orphan Gossling and Moore 1975, species. (Type
species of the genus).
Gemmobacter aquatilis orphan Rothe et al. 1988, sp. nov. (Type species of the
genus).
Geotoga petraea below Parc Davey et al. 1993, sp. nov. (Type species of the
genus).
Globicatella sanguinis below Parc corrig. Collins et al. 1995, sp. nov. (Type
species of the genus).
Halanaerobacter chitinivorans below Living Tree corrig. Liaw and Mah 1996, sp. nov. (Type
species of the genus).
Halobacillus halophilus orphan (Claus et al. 1984) Spring et al. 1996, comb.
nov. (Type species of the genus).
Halobaculum gomorrense below Parc Oren et al. 1995, sp. nov. (Type species of the
genus).
Halomethanococcus doii orphan Yu and Kawamura 1988, sp. nov. (Type species
of the genus).
strain ATCC 35584 = DSM 2162 = JCM 9187.
strain ATCC 49408 = DSM 5002 = IFAM 954.
----
----
strain ATCC 23834 = CCUG 2138 = CIP
70.75 = DSM 8340 = JCM 12952 = LMG
15557 = NCTC 10596.
strain ELCN-1 = ATCC 43707 = NCTC 11714.
strain ATCC 33852 = CCUG 14506 = CDC
1468-78 = CIP 81.94 = DSM 4580 = JCM
5911 = LMG 7869 = NCTC 12157.
strain Rt17-B1 = ATCC 35602 = DSM 5306.
----
----
strain ATCC 27749.
strain ATCC 49971 = DSM 3857 = IFAM
1031.
strain T5 = ATCC 51226.
strain 1152-78 = ATCC 51173 = CCUG
32999 = CIP 107044 = DSM 7447 = IFO
(now NBRC) 15551 = LMG 18987 = NCIMB
702835 (formerly NCFB 2835).
strain W5C8 = CIP 105156 = DSM 9569 =
OCM 229.
strain 3 = ATCC 35676 = DSM 2266 = JCM
20832 = LMG 17431.
strain ATCC 700876 = DS2807 = DSM 9297
= JCM 9908.
strain 1Y-1 = ATCC 43619.
3

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Halorhodospira halophila orphan (Raymond and Sistrom 1969) Imhoff and
Süling 1997, comb. nov. (Type species of the
genus).
Halothiobacillus neapolitanus below Parc (Parker 1957) Kelly and Wood 2000, comb.
nov. (Type species of the genus).
Halovibrio variabilis below Parc Fendrich 1989, sp. nov. (Type species of the
genus).
Heliophilum fasciatum below Parc Ormerod et al. 1996, sp. nov. (Type species of
the genus).
Heliothrix oregonensis below Ref Pierson et al. 1986, sp. nov. (Type species of
the genus).
Hollandina pterotermitidis orphan (ex To et al. 1978) Bermudes et al. 1988, sp.
nov., nom. rev. (Type species of the genus).
"Holospora undulata" * orphan (ex Hafkine 1890) Gromov and Ossipov 1981,
sp. nov., nom. rev. (Type species of the genus
Holospora (ex Hafkine 1890) Gromov and
Ossipov 1981).
Hydrogenobacter thermophilus below Parc Kawasumi et al. 1984, sp. nov. (Type species of
the genus).
Hydrogenothermus marinus below Parc Stöhr et al. 2001, sp. nov. (Type species of the
genus).
Hyphomicrobium vulgare orphan Stutzer and Hartleb 1899, species. (Type
species of the genus).
Iodobacter fluviatilis below Parc corrig. (Moss et al. 1981) Logan 1989, comb.
nov. (Type species of the genus).
Jahnella thaxteri orphan corrig. (ex Jahn 1924) Reichenbach 2007, nom.
rev., comb. nov. (Type species of the genus).
Kofleria flava orphan (ex Kofler 1913) Reichenbach 2007, nom. rev.,
comb. nov. (Type species of the genus).
"Koserella trabulsii" * orphan Hickman-Brenner et al. 1985, sp. nov. (Type
species of the genus).
Leclercia adecarboxylata orphan (Leclerc 1962) Tamura et al. 1987, comb. nov.
(Type species of the genus).
strain DSM 244.
strain Parker strain X = CIP 104769 = DSM
15147 = NCIMB 8539.
strain III = ATCC 49240 = CIP 105504 =
DSM 3051 = IAM 14440 = JCM 21223.
strain Tanzania = ATCC 51790 = DSM
11170.
strain IS/F-1
----
----
strain TK-6 = DSM 6534 = IAM 12695 = JCM
7687.
strain VM1 = DSM 12046 = JCM 10974.
strain ATCC 33404 = JCM 6889 = NCIB
9698.
strain Logan C009
strain Pl t4 = CIP 109123 = DSM 14626.
strain Pl vt1 = CIP 109120 = DSM 14601.
strain ATCC 35313 = CCUG 18772 = CDC
3349-72 = LMG 7872 = NCTC 12131 = PCM
2476. =
strain ATCC 23216 = CIP 82.92 = DSM 5077
= HAMBI 1696 = JCM 1667 = LMG 2803 =
NCTC 13032.
Legionella pneumophila subsp. pneumophila below Parc Brenner et al. 1979, subsp. nov. strain Philadelphia 1 = ATCC 33152 = CCUG
9568 = CIP 103854 = DSM 7513 = JCM
7571 = NCTC 11192.
Leptothrix ochracea orphan (Roth 1797) Kützing 1843, species. (Type
species of the genus).
----
Leptotrichia buccalis below Parc (Robin 1853) Trevisan 1879, species. (Type
species of the genus).
strain ATCC 14201 = CCUG 34316 = CIP
105792 = DSM 1135 = JCM 12969 = NCTC
10249.
4

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Lyticum flagellatum orphan (ex Preer et al. 1974) Preer and Preer 1982, sp.
nov., nom. rev. (Type species of the genus).
Macromonas mobilis orphan (Lauterborn 1915) Utermöhl and Koppe 1924,
species. (Type species of the genus).
Marinilabilia salmonicolor below Parc (Veldkamp 1961) Nakagawa and Yamasato
1996, comb. nov. (Type species of the genus).
Melittangium boletus orphan Jahn 1924, species. (Type species of the
genus).
Meniscus glaucopis orphan Irgens 1977, species. (Type species of the
genus).
Mesophilobacter marinus orphan Nishimura et al. 1989, sp. nov. (Type species of
the genus).
Methanococcoides methylutens below Parc Sowers and Ferry 1985, sp. nov. (Type species
of the genus).
Methanogenium cariaci below Parc Romesser et al. 1981, sp. nov. (Type species of
the genus).
Methanohalobium evestigatum below Parc corrig. Zhilina and Zavarzin 1988, sp. nov.
(Type species of the genus).
Methanolobus tindarius below Parc König and Stetter 1983, sp. nov. (Type species
of the genus).
Methanopyrus kandleri below Parc Kurr et al. 1992, sp. nov. (Type species of the
genus).
Methanosaeta concilii orphan (Patel 1985) Patel and Sprott 1990, comb. nov.
(Type species of the genus).
Methanosalsum zhilinae orphan (Mathrani et al. 1988) Boone and Baker 2002,
comb. nov. (Type species of the genus).
"Methanosarcina methanica" * orphan (Smit 1930) Kluyver and van Niel 1936,
species. (Type species of the genus).
Methanothermus fervidus below Parc Stetter 1982, sp. nov. (Type species of the
genus).
Methanothrix soehngenii orphan Huser et al. 1983, sp. nov. (Type species of the
genus).
"Methanotorris igneus" ** below Parc (Burggraf et al. 1990) Whitman 2002, comb.
nov. (Type species of the genus).
Methylobacillus glycogenes below Parc Yordy and Weaver 1977, species. (Type species
of the genus).
Methylovorus glucosotrophus orphan Govorukhina and Trotsenko 1991, sp. nov.
(Type species of the genus).
strain 299 = ATCC 30700 (the accession
numbers refer to protozoan strains carrying
the endosymbionts).
----
strain ATCC 19041 = CIP 104809 = DSM
6480 = IFO (now NBRC) 15948 = JCM 21150
= LMG 1346.
----
strain ATCC 29398.
strain: strain 14S-4 = IAM 13185.
strain TMA-10 = ATCC 33938 = DSM 2657 =
OCM 158.
strain JR1 = ATCC 35093 = DSM 1497 = JCM
10550 = OCM 49.
strain Z-7303 = DSM 3721 = OCM 161.
strain Tindari 3 = T3 = ATCC 35996 = DSM
2278 = OCM 150.
strain AV19 = DSM 6324 = JCM 9639.
strain GP6 = ATCC 35969 = DSM 3671 =
JCM 10134 = NRC 2989 = OCM 69 (OGC
69).
strain WeN5 = DSM 4017 = OCM 62.
----
strain ATCC 43054 = DSM 2088 = JCM
10308.
strain Opfikon = DSM 2139.
strain Kol 5 = DSM 5666 = JCM 11834.
strain TK 0113 = Yordy and Weaver T-11 =
ATCC 29475 = DSM 5685 = JCM 2850 =
LMG 6082 = NCIB (now NCIMB) 11375 =
VKM B-2060.
strain 6B1 = ATCC 49758 = DSM 6874 =
NCIMB 13222 = UCM B-1745 = VKM B-1745.
5

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Micavibrio admirandus orphan Lambina et al. 1989, sp. nov. (Type species of
the genus).
strain ARL-14 = VKM B-1619.
Microvirga subterranea below Living Tree Kanso and Patel 2003, sp. nov. (Type species of
the genus).
strain FaiI4 = ATCC BAA-295 = DSM 14364.
Moellerella wisconsensis orphan Hickman-Brenner et al. 1984, sp. nov. (Type strain 2896-78 = ATCC 35017 = CIP 103034
species of the genus).
= DSM 5076 = JCM 5895 = LMG 10145 =
NCTC 12132.
Morococcus cerebrosus orphan Long et al. 1981, sp. nov. (Type species of the strain UQM 858 = ATCC 33486 = CIP 81.93
genus).
= NCTC 11393.
Mycoplasma mycoides subsp. mycoides orphan (Borrel et al. 1910) Freundt 1955, subspecies. strain NCTC 10114.
Neorickettsia helminthoeca orphan Philip et al. 1953, species. (Type species of the
genus).
Nitrococcus mobilis below Living Tree Watson and Waterbury 1971, species. (Type
species of the genus).
Nitrosococcus nitrosus orphan (Migula 1900) Buchanan 1925, species. (Type
species of the genus).
Nitrosospira briensis orphan Winogradsky and Winogradsky 1933, species.
(Type species of the genus).
Nitrospina gracilis orphan Watson and Waterbury 1971, species. (Type
species of the genus).
Nitrospira marina orphan Watson et al. 1986, sp. nov. (Type species of
the genus).
Oceanospirillum linum below Parc (Williams and Rittenberg 1957) Hylemon et al.
1973, species. (Type species of the genus).
Oligotropha carboxidovorans orphan (ex Meyer and Schlegel 1978) Meyer et al.
1994, nom. rev., comb. nov. (Type species of
the genus).
Olleya marilimosa below Living Tree Mancuso Nichols et al. 2005, sp. nov. (Type
species of the genus).
Oscillochloris chrysea orphan Gorlenko and Pivovarova 1989, sp. nov. (Type
species of the genus).
Oscillospira guilliermondii orphan corrig. Chatton and Pérard 1913, species. (Type
species of the genus).
Pasteuria ramosa orphan Metchnikoff 1888, species. (Type species of the
genus).
Pectinatus cerevisiiphilus below Parc Lee et al. 1978, species. (Type species of the
genus).
Pedomicrobium ferrugineum orphan Aristovskaya 1961, species. (Type species of
the genus).
"Pelczaria aurantia" * orphan Poston 1994, sp. nov. (Type species of the
genus).
----
strain ATCC 25380 = CIP 104751.
----
----
----
strain ATCC 43039.
strain ATCC 11336 = CIP 103374 = DSM
6292 = IFO (now NBRC) 15448 = LMG 5214
= VKM B-1416.
strain DM5 = ATCC 49405 = DSM 1227.
strain CAM030 = ACAM 1065 = CIP 108537.
----
----
strain ATCC 27377 = DSM 6068.
strain ATCC 29359 = DSM 20467 = HAMBI
1348.
strain ATCC 33119 = IFAM S-1290.
strain ATCC 49321 = DSM 12801 = IFO (now
NBRC) 15588.
6

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Pelistega europaea below Parc Vandamme et al. 1998, sp. nov. (Type species
of the genus).
strain Hommez N57 = ATCC 700725 = CCUG
39967 = CIP 105809 = CIP 105842 = LMG
10982.
strain SW256 = DSM 16809 = NCIMB 14027.
Persicivirga xylanidelens below Living Tree O'Sullivan et al. 2006, sp. nov. (Type species of
the genus).
Petrotoga miotherma below Parc Davey et al. 1993, sp. nov. (Type species of the
genus).
strain 42-6 = ATCC 51224 = DSM 10691.
Pillotina calotermitidis orphan (ex Hollande and Gharagozlou 1967) Bermudes
et al. 1988, sp. nov., nom. rev. (Type species
of the genus).
----
Planctomyces bekefii orphan Gimesi 1924, species. (Type species of the
genus).
----
Polyangium vitellinum orphan Link 1809, species. (Type species of the
genus).
strain TC 4564.
Polynucleobacter necessarius orphan Heckmann and Schmidt 1987, sp. nov. (Type
species of the genus).
----
Prochloron didemni orphan (ex Lewin 1975) Florenzano et al. 1986, sp.
nov., nom. rev. (Type species of the genus).
----
Prolinoborus fasciculus orphan (Strength et al. 1976) Pot et al. 1992, comb. strain ATCC 27740 = CIP 103579 = LMG
nov. (Type species of the genus).
12892.
Propionicimonas paludicola below Living Tree Akasaka et al. 2003, sp. nov. (Type species of
the genus).
strain Wd = DSM 15597 = JCM 11933.
Pseudocaedibacter conjugatus orphan (ex Preer et al. 1974) Quackenbush 1982, nom.
rev., comb. nov. (Type species of the genus).
strain 540 = ATCC 30796.
Pseudonocardia thermophila below Parc Henssen 1957, species. (Type species of the strain ATCC 19285 = DSM 43832 = IFO (now
genus).
NBRC) 15559 = JCM 3095 = VKM Ac-896.
Pyrolobus fumarii below Parc Blöchl et al. 1999, sp. nov. (Type species of the
genus).
strain 1A = DSM 11204.
Quinella ovalis orphan Krumholz et al. 1993, sp. nov. (Type species of
the genus).
----
Rhodoblastus acidophilus below Parc (Pfennig 1969) Imhoff 2001, comb. nov. (Type strain Pfennig 7050 = ATCC 25092 = CIP
species of the genus).
103962 = DSM 137 = LMG 4304.
Rhodomicrobium vannielii below Parc Duchow and Douglas 1949, species. (Type
species of the genus).
strain ATCC 17100 = DSM 162 = LMG 4299.
Rickettsiella popilliae orphan (Dutky and Gooden 1952) Philip 1956, species.
(Type species of the genus).
----
Roseburia cecicola below Parc Stanton and Savage 1983, sp. nov. (Type
species of the genus).
strain GM = ATCC 33874.
Roseibacterium elongatum below Living Tree Suzuki et al. 2006, sp. nov. (Type species of
the genus).
strain OCh 323 = CIP 107377 = JCM 11220.
Roseospira mediosalina below Living Tree Imhoff et al. 1998, sp. nov. (Type species of
the genus).
strain BN 280.
7

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Rugamonas rubra orphan Austin and Moss 1987, sp. nov. (Type species strain MOM 28/2/79 = ATCC 43154 = CCM
of the genus).
3730.
Saccharobacter fermentatus orphan Yaping et al. 1990, sp. nov. (Type species of
the genus).
strain WVB8512.
Salmonella enterica subsp. enterica orphan (ex Kauffmann and Edwards 1952) Le Minor strain LT2 (serovar Typhimurium) = ATCC
and Popoff 1987, subsp. nov.
43971 = CIP 60.62 = NCIMB 11450 = NCTC
12416.
Saprospira grandis below Parc Gross 1911, species. (Type species of the strain ATCC 23119 = JCM 21750 = LMG
genus).
10407.
Seliberia stellata orphan Aristovskaya and Parinkina 1963, species.
(Type species of the genus).
strain INMI N-9 = JCM 21594 = VKM B-1340.
Serpens flexibilis orphan Hespell 1977, species. (Type species of the
genus).
strain ATCC 29606.
Sorangium cellulosum orphan (Brockman 1989) Reichenbach 2007, comb. strain So ce1871 = CIP 109122 = DSM
nov. (Type species of the genus).
14627.
Sphaerotilus natans orphan Kützing 1833, species. (Type species of the strain ATCC 13338 = DSM 6575 = LMG
genus).
7172.
Spirillum volutans below Parc Ehrenberg 1832, species. (Type species of the
genus).
strain ATCC 19554.
Spirochaeta plicatilis orphan Ehrenberg 1835, species. (Type species of the
genus).
----
Sporohalobacter lortetii below Parc (Oren 1984) Oren et al. 1988, comb. nov.
(Type species of the genus).
strain MD-2 = ATCC 35059 = DSM 3070.
Stibiobacter senarmontii orphan Lyalikova 1974, species. (Type species of the
genus).
strain VKM MV-1130.
Sulfuricurvum kujiense below Living Tree Kodama and Watanabe 2004, sp. nov. (Type strain YK-1 = ATCC BAA-921 = JCM 11577 =
species of the genus).
MBIC 06352.
Sulfurococcus mirabilis orphan Golovacheva et al. 1995, sp. nov. (Type species
of the genus).
strain INMI AT-59.
Sutterella wadsworthensis orphan Wexler et al. 1996, sp. nov. (Type species of strain WAL 9799 = ATCC 51579 = CCUG
the genus).
42229 = CIP 104799 = DSM 14016.
Symbiotes lectularius orphan (Arkwright et al. 1921) Philip 1956, species.
(Type species of the genus).
----
Syntrophobotulus glycolicus orphan Friedrich et al. 1996, sp. nov. (Type species of
the genus).
strain FlGlyR = DSM 8271.
Syntrophomonas wolfei subsp. wolfei orphan McInerney et al. 1982, subsp. nov. strain Göttingen G311 = DSM 2245A (the
Göttingen strain grown in coculture with
Desulfovibrio sp. strain G-11 with sulfate in
the medium) and DSM 2245B (the same
strain grown in coculture with the type strain
of Methanospirillum hungatei, strain DSM
864).
8

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Tectibacter vulgaris orphan (ex Preer et al. 1974) Preer and Preer 1982, sp.
nov., nom. rev. (Type species of the genus).
strain 225 = ATCC 30697 (The accession
numbers refer to protozoan strains carrying
the endosymbionts).
strain 26-4b1 = ATCC BAA-1305 = KACC
11899.
strain Su883 = ATCC 49978 = DSM 6589.
Telmatospirillum siberiense orphan Sizova et al. 2007, sp. nov. (Type species of
the genus).
Thermanaerovibrio acidaminovorans below Living Tree (Guangsheng et al. 1997) Baena et al. 1999,
comb. nov. (Type species of the genus).
Thermochromatium tepidum below Parc (Madigan 1986) Imhoff et al. 1998, comb. nov.
(Type species of the genus).
strain MC = ATCC 43061 = DSM 3771.
Thermohydrogenium kirishiense orphan Zacharova et al. 1996, sp. nov. (Type species strain ZE-7 (strain deposited in the collection
of the genus).
of the Department of Microbiology, Moscow
State University, Moscow, Russia) = DSM
11055.
Thermosinus carboxydivorans below Ref Sokolova et al. 2004, sp. nov. (Type species of
the genus).
strain Nor1 = DSM 14886 = VKM B-2281.
Thermothrix thiopara below Ref Caldwell et al. 1981, sp. nov. (Type species of
the genus).
strain ATCC 29244.
Thiobacterium bovistum orphan corrig. (ex Molisch 1912) La Riviere and Kuenen
1989, sp. nov., nom. rev. (Type species of the
genus).
----
Thiomargarita namibiensis orphan Schulz et al. 1999, sp. nov. (Type species of
the genus).
----
Thiopedia rosea orphan Winogradsky 1888, species. (Type species of
the genus).
----
Thioploca schmidlei orphan Lauterborn 1907, species. (Type species of the
genus).
----
Thiospira winogradskyi orphan (Omelianski 1905) Visloukh 1914, species.
(Type species of the genus).
----
Thiospirillum jenense orphan (Ehrenberg 1838) Migula 1900, species. (Type
species of the genus).
strain DSM 216.
Thiothrix nivea orphan (Rabenhorst 1865) Winogradsky 1888, species.
(Type species of the genus).
----
Thiovulum majus orphan Hinze 1913, species. (Type species of the
genus).
----
Toxothrix trichogenes orphan (Cholodny 1924) Beger 1953, species. (Type
species of the genus).
----
Treponema pallidum orphan (Schaudinn and Hoffmann 1905) Schaudinn
1905, species. (Type species of the genus).
----
Vampirovibrio chlorellavorus orphan (ex Gromov and Mamkayeva 1972) Gromov
and Mamkayeva 1980, nom. rev., comb. nov.
(Type species of the genus).
strain ATCC 29753.
Vitreoscilla beggiatoides orphan Pringsheim 1949, species. (Type species of the
genus).
----
9

Supplementary table 7: Type Species not covered by the ALL-Species Living Tree.
Taxon name Status Author(s) Type strain cited in its effective publication
Wigglesworthia glossinidia orphan Aksoy 1995, sp. nov. (Type species of the
genus).
Wolbachia pipientis orphan Hertig 1936, species. (Type species of the
genus).
Yokenella regensburgei orphan Kosako et al. 1985, sp. nov. (Type species of
the genus).
Zavarzinia compransoris orphan (ex Nozhevnikova and Zavarzin 1974) Meyer et
al. 1994, nom. rev., comb. nov. (Type species
of the genus).
----
----
strain ATCC 49455 = BCRC (formerly CCRC)
12225 = CIP 105435 = JCM 2403 = NCTC
11966 = NIH 725-83.
strain Z-1155 = ATCC 51430 = CCUG 15334
= DSM 1231 = LMG 5821 = LMG 8357.
The field Status contains the reason for which the type species is missing in the tree. Orphan, type strain without any SSU sequence in public repositories; below Parc, type
strain with only sequences below the SILVA Parc quality treshold; below Ref, type strain with sequences standing in Parc database; below Living Tree, type strain with
sequences in the Ref database but still below the Living Tree quality criteria.
---- Species without type strain available in culture collections.
* Do not meet the criteria required by the Bacteriological Code (1990 revision), or they are
incorrect, or they are rejected.
** Do not meet the criteria required by the Bacteriological Code (1990 revision), or they are incorrect, or they are rejected, but they are cited in the Request for an Opinion by
Euzéby and Tindall (Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301).
10