R1-C
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FastQC Report<br />
Sat 18 Feb 2017<br />
<strong>R1</strong>_fastx_sickle.fastq<br />
Summary<br />
• Basic Statistics<br />
• Per base sequence quality<br />
• Per tile sequence quality<br />
• Per sequence quality scores<br />
• Per base sequence content<br />
• Per sequence GC content<br />
• Per base N content<br />
• Sequence Length Distribution<br />
• Sequence Duplication Levels<br />
• Overrepresented sequences<br />
• Adapter Content<br />
• Kmer Content
Basic Statistics<br />
Measure<br />
Value<br />
Filename<br />
<strong>R1</strong>_fastx_sickle.fastq<br />
File type<br />
Conventional base calls<br />
Encoding Sanger / Illumina 1.9<br />
Total Sequences 1807796<br />
Sequences flagged as poor quality 0<br />
Sequence length 20-270<br />
%GC 64
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences<br />
No overrepresented sequences
Adapter Content
Kmer Content
Sequence Count PValue Obs/Exp Max Max Obs/Exp Position<br />
ATATGAA 280 1.5026219E-4 24.209892 9<br />
GTTATAG 115 0.0029327774 22.32684 260-264<br />
CTTATAC 305 0.0035678928 11.85045 260-264<br />
AAGTCCA 1340 0.008496351 7.5881743 8<br />
CTGTCTC 1465 9.681338E-4 5.2867675 260-264<br />
Produced by FastQC (version 0.11.5)
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