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On the validity of the steady state assumption of enzyme kinetics

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Bulletin <strong>of</strong> Ma<strong>the</strong>matical Biolooy Vol. 50, No. 6, pp. 579-593, 1988.<br />

Printed in Great Britain.<br />

ON THE VALIDITY OF THE STEADY STATE<br />

ASSUMPTION OF ENZYME KINETICS<br />

LEE A. SEGEL<br />

Department <strong>of</strong> Applied Ma<strong>the</strong>matics and Computer Science,<br />

The Weizmann Institute <strong>of</strong> Science,<br />

Rehovot IL-76100,<br />

Israel<br />

0092-8240/8853.00 + 0.00<br />

Pergamon Press plc<br />

Society for Ma<strong>the</strong>matical Biology<br />

By estimating relevant time scales, a simple new condition can be found that ensures <strong>the</strong> <strong>validity</strong><br />

<strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> for a standard <strong>enzyme</strong>-substrate reaction. The generality <strong>of</strong> <strong>the</strong><br />

approach is demonstrated by applying it to <strong>the</strong> determination <strong>of</strong> <strong>validity</strong> criteria for <strong>the</strong> <strong>steady</strong><br />

<strong>state</strong> <strong>assumption</strong> applied to an <strong>enzyme</strong>-substrate-inhibitor system,<br />

Introduction. Virtually every biochemistry text shows how <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong> can be used to approximate <strong>the</strong> kinetic equations governing an<br />

<strong>enzyme</strong>-substrate reaction and <strong>the</strong>rewith to derive <strong>the</strong> informative straight-<br />

line graph <strong>of</strong> <strong>the</strong> Lineweaver-Burk plot. But texts do not present a simple clear<br />

criterion for <strong>the</strong> <strong>validity</strong> <strong>of</strong> this <strong>assumption</strong>, nor do <strong>the</strong>y provide general<br />

principles that can be used to ascertain <strong>the</strong> possible use <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong> to simplify more complicated kinetic equations. This lack is not<br />

surprising, for even <strong>the</strong> research literature does not contain <strong>the</strong> required<br />

material. It is <strong>the</strong> purpose <strong>of</strong> this paper to take steps to remedy <strong>the</strong> situation. It<br />

will be seen that our approach is applicable to a variety <strong>of</strong> kinetic problems.<br />

To set <strong>the</strong> stage, consider <strong>the</strong> <strong>enzyme</strong>-substrate reaction<br />

k 1 k 2<br />

E+S. -----~ C ~ E+P (1)<br />

k-I<br />

with governing differential equations for <strong>enzyme</strong>, substrate, <strong>enzyme</strong>-substrate<br />

complex, and product<br />

dE/dt=--klES+k_lC+k2C, dS/dt=-kiES+k ~C, (2a,b)<br />

dC/dt = k~ES- k_ ~C- kzC, dP/dt = k2C. (2c,d)<br />

Conventional initial conditions will be assumed:<br />

E(0)=Eo, S(0)=S o, C(0)=0, P(0)=0. (3)<br />

There are two conservation laws:<br />

579


580 LEE A. SEGEL<br />

E(t) + C(t) = Eo, S(t) + C(t) + P(t) = S o . (4a,b)<br />

Employment <strong>of</strong> (4a) to eliminate E yields <strong>the</strong> basic ma<strong>the</strong>matical problem<br />

dS/dt = - kl (Eo - C)S + k_ ~ C, (5a)<br />

dC/dt= kx(E o - C)S- (k_ , + k2)C, (5b)<br />

S(O)=S o, C(O)=O. (5c,d)<br />

According to <strong>the</strong> <strong>steady</strong> <strong>state</strong> approximation, after an initial brief transient<br />

period it is <strong>of</strong>ten possible to neglect <strong>the</strong> dC/dt term in (5b). With its left side<br />

replaced by zero, (5b) becomes an algebraic equation that is easily solved to<br />

yield<br />

C=EoS/(Km+ S), Km ==-(k_~ +k2)/k ~. (6a,b)<br />

Upon substituting (6a) into (5a) one obtains<br />

dS/dt = - k2EoS/(K . + S). (7)<br />

It is also conventionally assumed that a negligible amount <strong>of</strong> substrate is<br />

consumed during <strong>the</strong> fast transition period, so that (7) can be solved subject to<br />

<strong>the</strong> initial condition<br />

In addition, substitution <strong>of</strong> (6a) into (2d) shows that<br />

s(o) = So. (8)<br />

VmaxS V dP Vma x = k2E o. (9a,b,c)<br />

V-Km+S where =dt'<br />

It is frequently <strong>the</strong> case in <strong>the</strong> laboratory that <strong>the</strong> initial value (just after <strong>the</strong><br />

brief transient) <strong>of</strong> <strong>the</strong> derivative dS/dt can be estimated by observing a linear<br />

decrease in substrate over a "relatively short" time period, so that S does not<br />

decrease appreciably from S O . Then (9) can be applied to <strong>the</strong> initial reaction<br />

velocity V 0 :<br />

1<br />

V~ K,. + S O or Vo -- Vmax 1 + . (lOa,b)<br />

Equation (10b) in principle permits determination <strong>of</strong> Vma ~ and K,, from a<br />

Lineweaver-Burk) plot <strong>of</strong> 1/V o as a function <strong>of</strong> 1/S o . [It is outside <strong>the</strong> scope <strong>of</strong><br />

this paper to consider <strong>the</strong> most efficient way to plot <strong>the</strong> data. Fersht (1985) is an<br />

excellent general reference for enzymology.]<br />

This recapitulation <strong>of</strong> standard material allows us to pose several questions,<br />

which turn out to be closely related. (a) How can we estimate <strong>the</strong> duration <strong>of</strong>


STEADY STATE ASSUMPTION OF ENZYME KINETICS 581<br />

<strong>the</strong> fast transition period? (b) How can we estimate how long it takes for <strong>the</strong><br />

substrate concentration to decrease significantly? (c) For what ranges <strong>of</strong><br />

parameters is <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> valid? (d) If <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong> is regarded as a first approximation, how can a second<br />

approximation be found?<br />

A Didactic Example. It is instructive at this point to consider a simple exactly<br />

solvable example. Consider <strong>the</strong> kinetic scheme<br />

with <strong>the</strong> corresponding equations<br />

k 1 k 2<br />

A ~B ~C<br />

dA/dt=-kiA, A(0)=Ao;<br />

dB/dt=klA-k2B, B(0)=B o.<br />

C(t)=T-A(t)-B(t); T=Ao+Bo+Co, Co=C(0 ).<br />

The elementary <strong>the</strong>ory <strong>of</strong> differential equations yields <strong>the</strong> solutions<br />

and, if k 1 ~ k2,<br />

B(t) = B o exp(-- k2t )<br />

A(t)=Ao exp(-klt),<br />

kiAo<br />

Now C(t) can be determined from (14a).<br />

Consider <strong>the</strong> situation wherein<br />

- - [exp(-- k2t ) - exp(-- k 1 t)].<br />

k 2 - k 1<br />

(11)<br />

(12a,b)<br />

(13a,b)<br />

(14a,b)<br />

(15)<br />

(16)<br />

k 2 ~ kl, i.e. k i 1 ~ k? 1. (17a,b)<br />

For a relatively short time <strong>of</strong> order k~-l, exp(_klt) ~ 1 so that (16) can be<br />

approximated by<br />

B(t),,~ B o exp(-- k2t )- (klAo/k2) [exp(- k2t )- 1]. (18)<br />

According to (18), B(t) rapidly approaches <strong>the</strong> value klAo/k2. For longer times<br />

exp(- k2t ) is negligible. Now <strong>the</strong> following approximation <strong>of</strong> (16) describes <strong>the</strong><br />

relatively slow decay <strong>of</strong> B(t) from its "initial" (after <strong>the</strong> fast transient) value<br />

kiAo/k 2 "..<br />

B( t ) ~ (ki Ao/k2)exp(- kit ). (19)<br />

The key observation is that from (15) and (19) it follows that


582 LEE A. SEGEL<br />

B(t),~ (kl/k2)A(t), after <strong>the</strong> initial transient. (20)<br />

Equation (20) would be obtained from (13a) if we assumed that dB/dt could be<br />

set equal to zero. But nei<strong>the</strong>r B(t) nor A(t) are in a <strong>steady</strong> <strong>state</strong>: <strong>the</strong>y vary in time<br />

according to (15) and (16). Evidently dB/dt can be regarded as "very small"<br />

(after <strong>the</strong> fast transient), yielding what is <strong>of</strong>ten called a quasi-<strong>steady</strong> <strong>state</strong><br />

relation (20). Such a relation holds under <strong>the</strong> conditions (17) because <strong>the</strong> time<br />

scale k 21 for a change in B(t) is so short compared to <strong>the</strong> corresponding time<br />

scale k 11 for <strong>the</strong> change in A(t). With this relation between time scales, B(t) can<br />

always completely "keep up" with--i.e, remain in a "<strong>steady</strong>-<strong>state</strong>" with respect<br />

to--<strong>the</strong> changing concentration A(t).<br />

The principles just enunciated are quite general. The counterpart <strong>of</strong> <strong>the</strong><br />

quasi-<strong>steady</strong> <strong>state</strong> relation (20) between B(t) and A(t) is relation (6a) between<br />

<strong>the</strong> complex C(t) and <strong>the</strong> substrate S(t). Analogously to (17) we expect <strong>the</strong><br />

(quasi) <strong>steady</strong>-<strong>state</strong> relation to be valid only if <strong>the</strong> time-scale t c that<br />

characterizes changes in complex concentration is small compared to <strong>the</strong> time-<br />

scale t s for substrate changes. The question is, how can we obtain estimates <strong>of</strong> t c<br />

and ts? We now turn to this matter.<br />

Estimatin9 Time Scales. We begin with question (a). During <strong>the</strong> brief<br />

transient period <strong>the</strong> substrate concentration is not expected to change<br />

appreciably. Particularly because we want an estimate <strong>of</strong> <strong>the</strong> duration <strong>of</strong> this<br />

period (milliseconds, seconds, minutes?) we can make <strong>the</strong> approximation<br />

S= S o in (5b). This transforms (5b) into a linear equation, with <strong>the</strong> solution<br />

C(t)=C[1-exp(-2t)], C-EoSo/(Km+So) , 2=_kl(So+Km). (21a,b,c)<br />

Thus <strong>the</strong> complex (fast) time scale is given by t c = 2-1, i.e.<br />

tc = [kl(So + Km)] - 1<br />

Turning to question (b), we wish to estimate how long it will take for a<br />

significant change to occur in <strong>the</strong> substrate concentration. We denote this<br />

substrate (slow) time scale by t s. We employ <strong>the</strong> characterization (Segel, 1984,<br />

p. 56)<br />

(22)<br />

total change in S after fast transient<br />

ts ~ max]dS/dt] after fast transient (23)<br />

The time scale t s is an estimate <strong>of</strong> how long it takes for an appreciable change in<br />

<strong>the</strong> substrate concentration S. Formula (23) makes compensating over-<br />

estimates in providing <strong>the</strong> time for <strong>the</strong> total change in S, assuming that<br />

substrate depletion is at a maximal rate.


STEADY STATE ASSUMPTION OF ENZYME KINETICS 583<br />

The numerator <strong>of</strong> (23) is approximately S o . Assuming <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong><br />

<strong>steady</strong> <strong>state</strong> <strong>assumption</strong>, we observe that <strong>the</strong> denominator is given by (7) with<br />

S = S O . Thus t s ~ So/[k2EoSo/(K m -t- So) ], i.e.<br />

t s = (K m + So)/k2E o . (24)<br />

As a numerical example we can employ data for <strong>the</strong> hydrolysis <strong>of</strong><br />

benzoyl-L-arginine ethyl ester by trypsin where [as cited by Wong (1965)]<br />

k1=4 -lsec -1, k_l=25sec -1, k2=15sec -1 so that if So=KIn,<br />

E o = 10 -3 S o <strong>the</strong>n tc= 1/80 sec, ts= 133 sec.<br />

Criteria for <strong>the</strong> Validity <strong>of</strong> <strong>the</strong> Steady State Approximation. We are now ready<br />

to obtain some simple necessary criteria for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong>. <strong>On</strong>e such criterion is that <strong>the</strong> "brief transient" is indeed short<br />

compared to <strong>the</strong> time during which <strong>the</strong> substrate changes appreciably. This<br />

criterion is t c ~ t s or, from (22) and (24)<br />

Km+S~o4~ 1 + 1 +~s .<br />

In an alternative interpretation, t c ~ t s is <strong>the</strong> analog <strong>of</strong> condition (17b) for <strong>the</strong><br />

approximation (20).<br />

A second criterion concerns <strong>the</strong> "initial" condition (8). For this condition to<br />

be approximately valid <strong>the</strong>re must be only a negligible decrease in substrate<br />

concentration during <strong>the</strong> duration t c <strong>of</strong> <strong>the</strong> brief transient. This decrease, which<br />

we denote by AS, is certainly less than <strong>the</strong> product <strong>of</strong> <strong>the</strong> time duration t c and<br />

<strong>the</strong> initial (maximal) rate <strong>of</strong> substrate consumption. '"Initial" in <strong>the</strong> previous<br />

sentence refers to <strong>the</strong> very beginning <strong>of</strong> <strong>the</strong> experiment, so that <strong>the</strong> desired rate<br />

is obtained by setting t--0 in (5a). This yields<br />

A oS I dS E o (26)<br />

= S Odt max "tc- Km+S~o"<br />

The requirement that lAX/Sol be small compared to unity is thus expressed by<br />

Eo<br />

e ~ 1, where e - - - (27)<br />

Km+S o"<br />

If (27) holds <strong>the</strong>n (25) holds. Thus we propose e ~ 1 as <strong>the</strong> desired simple criterion<br />

for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong>.<br />

To check (27) let us examine <strong>the</strong> maximum velocity Vma x ~ IdP/dtlmax <strong>of</strong> <strong>the</strong><br />

reaction. From (2d) and (21b) we see that<br />

Vm(Calculated) c(calculated)<br />

ax __ --max (28)<br />

VCm QssA C


584 LEE A, SEGEL<br />

Equations (A1.1-4) <strong>of</strong> <strong>the</strong> appendix show that <strong>the</strong> dimensionless variable C/C<br />

depends only on <strong>the</strong> dimensionless parameters e, a = So/K m and x = k_ 1/k2. It<br />

is most important to examine <strong>the</strong> error when S O ~ K m, so that we take tr = 1 and<br />

calculate <strong>the</strong> ratio (28) for a range <strong>of</strong> values <strong>of</strong> x and for e=0.1 and 0.01.<br />

Figure 1 shows that <strong>the</strong> condition<br />

~


S<br />

STEADY STATE ASSUMPTION OF ENZYME KINETICS 585<br />

I I I I I I I I I<br />

I I I I I r I I I<br />

0 0 I 2<br />

T<br />

Figure 2. Comparison between <strong>the</strong> QSSA (dashed curves) and numerical<br />

integration (solid curves) when S o = E o but ~- Eo/(S o + K,) = 0.1 (x = 10, a = 1/9).<br />

The QSSA gives a good approximation even though <strong>the</strong> "small" parameter Eo/S o<br />

has <strong>the</strong> value unity. [All simulations were carried out using <strong>the</strong> BIOGRAPH<br />

package written by G. M. Odell. See Odell and Segel (1987).]<br />

use <strong>of</strong> "correct" dimensionless variables. See Appendix for an outline <strong>of</strong> how to<br />

proceed.<br />

Effects <strong>of</strong> Reversibility in Product Formation. Let us now take into account <strong>the</strong><br />

reversibility <strong>of</strong> product formation by decomposition <strong>of</strong> complex, so that (1) is<br />

modified to<br />

k~ k 2<br />

E+S~ -----~ C_ " E+P.<br />

k-I k-2<br />

Then <strong>the</strong> complex and product equations become<br />

dC/dt=k~(Eo-C)S-(k_x +k2)C+k_E(Eo-C)P, (29a)<br />

dP/dt = k2C- k_ 2(Eo -- C)P. (29b)<br />

In <strong>the</strong> brief transient layer, our previous estimates <strong>of</strong> t c and C will be accurate<br />

if <strong>the</strong> additional term k_ 2 (Eo - C)P is negligible, i.e. if<br />

Ik-2(E0 - C)P I ~ k2C. (30)<br />

To clarify <strong>the</strong> meaning <strong>of</strong> (30) we employ (2d) to estimate <strong>the</strong> product<br />

concentration Pi at <strong>the</strong> end <strong>of</strong> <strong>the</strong> fast time interval. We take <strong>the</strong> product <strong>of</strong> <strong>the</strong>


586 LEE A. SEGEL<br />

rate constant k2, <strong>the</strong> duration <strong>of</strong> <strong>the</strong> interval tc, and an average complex<br />

concentration C/2 yielding<br />

Pi~k2(ff/2)tc . (31)<br />

Employing P,,~ Pi and substituting for t c and C from (22) and (21b) we find that<br />

(30) holds if<br />

k 2 E


STEADY STATE ASSUMPTION OF ENZYME KINETICS 587<br />

Estimate (31) for <strong>the</strong> product concentration can be used to obtain in ano<strong>the</strong>r<br />

way <strong>the</strong> key requirement that substrate concentration does not decrease<br />

markedly during <strong>the</strong> fast transient interval. At <strong>the</strong> end <strong>of</strong> that interval, C ~ C,<br />

P~ k2(C/2)t c. Consequently, <strong>the</strong> conservation relation (4b) implies<br />

S=S o-C-P~S o-C(1 +lk 2 2 tc/. )<br />

(34)<br />

The requirement (S O - S)/S o < 1 yields<br />

But<br />

E~ (1+1)<br />

So+K, ~ k2t c


588 LEE A. SEGEL<br />

Here V ~s), V~mSa~, and K~m s~ now distinguish <strong>the</strong> abbreviations <strong>of</strong> (9) and (6) from<br />

<strong>the</strong>ir counterparts for <strong>the</strong> inhibitor<br />

Va ~ _dP 2 V~mt~x = k4Eo ' g~l) _ k _ 3 "q- k4 (40a,b,c)<br />

dt ' k 3<br />

Again we ask, for what parameter domain is <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong><br />

valid? We proceed in analogy with our earlier analysis and set S= S O and I= I o<br />

in (38b) and (38d). The resulting linear equations with constant coefficients<br />

have a solution <strong>of</strong> <strong>the</strong> form<br />

Cl(t)= Cll exp(-21t) + C12 exp(-22t)+ C1,<br />

C2(t) = Cx3 exp(-21t ) + C14 exp(- 22t) + C 2 . (41)<br />

As expected <strong>the</strong> solutions decay exponentially. The constant concentrations<br />

attained (in this approximation) as t~ oo are <strong>the</strong> counterparts <strong>of</strong> (21b) and<br />

provide <strong>the</strong> correct scales to use for <strong>the</strong> complex concentrations (see<br />

Appendix):<br />

C 1 = Eoa/(a + tl + 1), C 2 = Eotl/(a + tl + 1). (42)<br />

Here we have introduced <strong>the</strong> important dimensionless parameters<br />

a =_ So/Kff ), t I =Io/K~m '). (43)<br />

The exponential factors 21 and 22 are found from <strong>the</strong> two roots <strong>of</strong><br />

22-2[k1(S o + Kff)) + k3(Io + K~))] + klk3[ (S o + Kff )) (I o + Kff))-Solo]. (44)<br />

It is easily shown that unless o-r/,~ 1 <strong>the</strong> two roots <strong>of</strong> (44) are <strong>of</strong> <strong>the</strong> same<br />

magnitude. Roughly<br />

21 ~ 22 ,~ k 1 (S O + Kff )) + k 3 (I o + K~"). (45)<br />

The fast time scale t c is approximately <strong>the</strong> reciprocal <strong>of</strong> <strong>the</strong> common magnitude<br />

<strong>of</strong> 21 and 22 [compare (22)]. A formula for t c is most revealing if it is written in<br />

terms <strong>of</strong> <strong>the</strong> "individual" time scales for S and I<br />

[Compare (22).] We find that<br />

t~cS)- kl[So + Kff'] -1, t~c '' - k3[Io + K~')] -1 (46)<br />

1 1 1<br />

tc ~ ~ + t~c,-- 3 . (47)


STEADY STATE ASSUMPTION OF ENZYME KINETICS 589<br />

<strong>On</strong> <strong>the</strong> o<strong>the</strong>r hand if at/,~ 1 <strong>the</strong>re are two distinct time scales tic s) and ttc ~), and<br />

<strong>the</strong>se can be widely separated if ei<strong>the</strong>r t~cS)>> ttc ~) or ttcS),~ tic I).<br />

We now can calculate <strong>the</strong> key requirement for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong>. In complete analogy with <strong>the</strong> derivation <strong>of</strong> (27) we demand small<br />

relative changes in substrate and inhibitor concentrations during <strong>the</strong> course <strong>of</strong><br />

<strong>the</strong> fast transient period. Employing (47) we find respectively <strong>the</strong> two<br />

requirements<br />

Eo<br />

So + K~ s) + (k3/k~) [Io + Ka']<br />

1 and<br />

Eo<br />

I o + K~)+ (k~/k3) [So + K~ s~] 41.<br />

The slow time scale for <strong>the</strong> build-up <strong>of</strong> substrate is calculated from<br />

(48a,b)<br />

t s ,.~ ]So/(dS/dt)[ (49)<br />

where dS/dt ,.~ V ~s~ is given in (39a). This yields, toge<strong>the</strong>r with a corresponding<br />

calculation for <strong>the</strong> inhibitor,<br />

K es~ / S O I o "~ Kg ~ (. S o I o "X<br />

ts = ~ Vmax[k 1 +K,~ ~-~+~/~ K~,) , tl = ~ Vmax~ l+Km "-~-'~-'{'-~ Km ) " (50)<br />

As expected, <strong>the</strong> additional requirements t c ~ ts, t c ~ t x are guaranteed by (48).<br />

In laboratory applications <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> hypo<strong>the</strong>sis to measure kinetic<br />

coefficients, <strong>the</strong> reaction velocity is frequently ascertained by measuring a<br />

linear decay <strong>of</strong> substrate concentration. It is advantageous to employ <strong>the</strong><br />

simple "initial" form <strong>of</strong> (39), wherein S and/are replaced by S O and I o . If this is<br />

to be permitted, <strong>the</strong> inhibitor must remain close to its initial value during <strong>the</strong><br />

time that <strong>the</strong> substrate measurements are carried out. Such is expected to be <strong>the</strong><br />

case if <strong>the</strong> slow time scales are comparable (t s,.~ tt) but not if t s >> t~. But if <strong>the</strong><br />

latter condition holds, all will be well if <strong>the</strong> roles <strong>of</strong> substrate and inhibitor are<br />

interchanged.<br />

Miller and Balis (1969)found instances under which Lineweaver-Burk plots<br />

were not straight lines, but became so when <strong>the</strong> role <strong>of</strong> <strong>enzyme</strong> and inhibitor<br />

were interchanged. Rubinow and Lebowitz (1970) performed a careful<br />

<strong>the</strong>oretical analysis <strong>of</strong> <strong>the</strong> <strong>kinetics</strong>, confirming Miller and Balis' intuition as to<br />

<strong>the</strong> cause <strong>of</strong> <strong>the</strong>ir anomalous results. [An alternative reference is Rubinow<br />

(1975).] The parameter 3 was shown by Rubinow and Lebowitz (1970) to be<br />

<strong>the</strong> key to <strong>the</strong> analysis, where<br />

Their development was based on <strong>the</strong> formula<br />

I(0/Io = [s(t)/So]<br />

(51)<br />

(52)


590 LEE A. SEGEL<br />

which follows at once from (39), that <strong>the</strong>y correctly held to indicate that "3 is a<br />

measure <strong>of</strong> <strong>the</strong> relative fastness or slowness <strong>of</strong> <strong>the</strong> two substances." Our<br />

approach makes everything particularly transparent, for it follows from (50)<br />

that<br />

.~ ts/t I.<br />

That is, 6 is <strong>the</strong> ratio <strong>of</strong> <strong>the</strong> slow time scales for inhibitor and substrate.<br />

Summary and Discussion. The most important result <strong>of</strong> this paper is <strong>the</strong><br />

simple criterion (27) for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> for simple<br />

<strong>enzyme</strong>-substrate reactions<br />

E~o ~1"<br />

So+Kin<br />

A number <strong>of</strong> articles [-see Segel and Slemrod (1988) for a literature survey] <strong>state</strong><br />

that <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> is valid when Eo/S o ~ 1. This is true, but<br />

unnecessarily restrictive. As our simulations show, and as our analysis<br />

explains, <strong>the</strong> <strong>assumption</strong> can provide an excellent approximation even when<br />

E o ~ S O as long as <strong>the</strong> initial concentration <strong>of</strong> <strong>enzyme</strong> is small compared to <strong>the</strong><br />

Michaelis constant.<br />

Laboratory experiments are generally arranged so that E o ~ S O but <strong>the</strong>re are<br />

many situations in vivo where this is not <strong>the</strong> case (Sols and Marco, 1970).<br />

Moreover, and very importantly, <strong>the</strong> formalism (1) also represents receptor<br />

(E)-ligand (S) interactions, wherein S O may very well not be large compared to<br />

E o . Thus our extension <strong>of</strong> <strong>the</strong> traditional result has biological importance.<br />

<strong>On</strong>ce <strong>the</strong> role <strong>of</strong> K m is recognized one would conjecture that <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

<strong>assumption</strong> would also be increasingly accurate in <strong>the</strong> presence <strong>of</strong> increasing<br />

concentrations <strong>of</strong> inhibitor. This is borne out by our study <strong>of</strong> <strong>the</strong> <strong>enzyme</strong>-sub-<br />

strate-inhibitor system (37). When <strong>the</strong> forward rate constants k 1 and k 3 are<br />

comparable (and SoIo/K~)K~ ) is not too small) <strong>the</strong>n <strong>the</strong> two conditions (48)<br />

collapse to a single criterion for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong>:<br />

eo<br />

So 1.<br />

Note that indeed <strong>the</strong> inhibitor "supplements" <strong>the</strong> Km'S. Here too <strong>the</strong> literature<br />

gives sufficient conditions for <strong>the</strong> <strong>validity</strong> <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong>, but<br />

not necessary ones: for example Rubinow (1975, p. 57) gives <strong>the</strong> requirements<br />

as Eo/S o .~ 1, kl/k 3 ~ 1, So/I o ,~ 1.<br />

The results that we have obtained were determined by means <strong>of</strong> estimates, in<br />

terms <strong>of</strong> <strong>the</strong> parameters <strong>of</strong> <strong>the</strong> problem, <strong>of</strong> substrate and complex concentra-<br />

tions, and <strong>of</strong> <strong>the</strong> time scales for <strong>the</strong> fast initial transient and for <strong>the</strong> relatively


STEADY STATE ASSUMPTION OF ENZYME KINETICS 591<br />

slow later period during which substrate decreases significantly. We have<br />

demonstrated (see Appendix) that with <strong>the</strong> aid <strong>of</strong> <strong>the</strong>se estimates, appropriate<br />

dimensionless variables can be formed in terms <strong>of</strong> which standard singular<br />

perturbation <strong>the</strong>ory provides a semi-automatic procedure for determining<br />

higher order corrections to <strong>the</strong> basic approximations.<br />

A more thorough examination <strong>of</strong> some <strong>of</strong> <strong>the</strong> points raised here can be found<br />

in <strong>the</strong> paper <strong>of</strong> Segel and Slemrod (1988). In particular Segel and Slemrod<br />

(1988) show (i) that condition (27) is still appropriate when (3) includes <strong>the</strong><br />

general conditions C(0) = C o, P(0) = Po; (ii) how <strong>the</strong> concept <strong>of</strong> time scales can<br />

be used to reveal <strong>the</strong> possibility <strong>of</strong> a "reverse <strong>steady</strong> <strong>state</strong>" wherein dS/dt ~ 0;<br />

(iii) how a generalized version <strong>of</strong> <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> can be used even if<br />

(27) does not hold, providing that (25) is valid.<br />

As we indicated in treating <strong>the</strong> <strong>enzyme</strong>-substrate-inhibitor system, our<br />

approach can be extended to a variety <strong>of</strong> kinetic problems. Ano<strong>the</strong>r example is<br />

afforded by <strong>the</strong> paper <strong>of</strong> Frenzen and Maini (1988) who employ <strong>the</strong> concepts<br />

outlined here to <strong>the</strong> case <strong>of</strong> a two-step enzymic reaction. Some new ideas are<br />

needed when oscillatory chemical reactions are to be studied with <strong>the</strong> aid <strong>of</strong> <strong>the</strong><br />

<strong>steady</strong> <strong>state</strong> <strong>assumption</strong>.This is because <strong>the</strong> magnitudes <strong>of</strong> <strong>the</strong> oscillating<br />

concentrations generally bear no relationship to <strong>the</strong> initial concentrations.<br />

Thoughts on this type <strong>of</strong> problem will be <strong>the</strong> subject <strong>of</strong> a future publication.<br />

APPENDIX<br />

Improving <strong>the</strong> Steady State Approximation. In exemplifying <strong>the</strong> text's brief discussion <strong>of</strong> scaled<br />

dimensionless variables let us begin with <strong>the</strong> fast transient period. From our earlier discussion it<br />

follows that S o and C are <strong>the</strong> correct concentration scales while t c is <strong>the</strong> correct time scale. We<br />

thus introduce <strong>the</strong> dimensionless scaled variables<br />

with which <strong>the</strong> equations become<br />

with initial conditions<br />

s-S/So, c-C/C, z-t/tc, (AI.1)<br />

ds I a ~c(tc+l)-X ] dc a 1<br />

~zz=e -s+a+ lcs-~ a+l c , ~z=s-~-~cs--~-~c, (A1.2a,b)<br />

The equations contain three dimensionless parameters:<br />

s(0)= 1, c(0)=0. (A1.3a,b)<br />

e--Eo/(So+Km), a=-So/K.,, x~k_l/k 2. (A1.4)<br />

Under our basic <strong>assumption</strong> [compare (27)] that e~ 1, <strong>the</strong> natural first approximation is to<br />

replace (A1.2a) by<br />

ds/dz=0, i.e. s(z)-- 1. (A1.5)


592 LEE A. SEGEL<br />

Therewith simplifying (AI.2b) we find<br />

c(z) = 1 - exp(- z). (A1.6)<br />

Equation (At.6) is simply <strong>the</strong> dimensionless version <strong>of</strong> (21a). Determination <strong>of</strong> higher<br />

approximations is in principle simply accomplished by <strong>the</strong> standard device <strong>of</strong> assuming series<br />

solutions:<br />

S(~')=S(O}('/~)Af'~:S(1}(~)"~ -''" , (~('C)=C(0)(T)-~C(1)QC)JC "". (At.7)<br />

Taking t c as a time scale is appropriate in <strong>the</strong> fast transient region, but not later--when we<br />

expect <strong>the</strong> <strong>steady</strong> <strong>state</strong> <strong>assumption</strong> to be valid. There <strong>the</strong> appropriate scaled dimensionless time<br />

variable is<br />

T = tit s. (A1.8)<br />

Retaining <strong>the</strong> previous concentration variables we now find <strong>the</strong> dimensionless equations<br />

The <strong>steady</strong> <strong>state</strong> <strong>assumption</strong><br />

~___T_ ds (~+ 1) (a+ 1) [ _ s + ~.~_~ a cs q_ x0r _~_~[ 1) -~ c l '<br />

dc [ a 1 ]<br />

e -dT = (~c + 1 ) (a + 1) s - ~ cs -- ~ c . (A 1.9a,b)<br />

(a+ 1)s<br />

c - (AI.10)<br />

as+ 1<br />

occurs "automatically" when one equates to zero <strong>the</strong> small parameter ~ in (A1.9b).<br />

Figure 3 shows numerical solutions <strong>of</strong> (A 1.9) for three values <strong>of</strong> a =-- So/K m when ~ = 0.01. After<br />

<strong>the</strong> initial fast transient (during which, as expected, s suffers a negligible decrease) <strong>the</strong> solutions<br />

are indistinguishable from (A 1.10)_ <strong>On</strong> each trajectory <strong>the</strong> first arrow shows <strong>the</strong> point achieved<br />

by <strong>the</strong> solutions at t = t c, i.e. z = 1, T= tc/t s = e/[(1 + K) (1 + a)]. In all three cases, as expected<br />

from (A1.6), c= l-e- -=0.63. More important is <strong>the</strong> graphical demonstration that t c is <strong>the</strong><br />

correct time scale for <strong>the</strong> fast transient.<br />

C o-=1<br />

0.5<br />

0 0.5 1.0<br />

s<br />

Figure 3. Phase plane plots <strong>of</strong> solutions to (A1.9) for e=0.01, K= 10, and three<br />

values <strong>of</strong>~ = So/K.,. <strong>On</strong> each trajectory, two arrows show <strong>the</strong> point reached at t = t c<br />

and t = ts, respectively (i.e. T= tc/ts, T= 1).


STEADY STATE ASSUMPTION OF ENZYME KINETICS 593<br />

The second arrows on <strong>the</strong> trajectories show <strong>the</strong> points achieved by <strong>the</strong> solutions when t = t s,<br />

i.e. T= 1. It is thus demonstrated that t s is indeed <strong>the</strong> correct time scale for significant change in S<br />

(or s).<br />

Higher approximations can again be found by series expansions, although "matching"<br />

methods <strong>of</strong> singular perturbation <strong>the</strong>ory must be used to impose appropriate initial conditions.<br />

Segel and Slemrod (1988) provide detailed formulas for correction terms to <strong>the</strong> <strong>steady</strong> <strong>state</strong><br />

approximation, toge<strong>the</strong>r with a pro<strong>of</strong> that <strong>the</strong> approximations are indeed valid for small e.<br />

Earlier such calculations and as well as a pro<strong>of</strong> had been provided by Heineken, Tsuchiya and<br />

Aris (1967). The latter pro<strong>of</strong> was less comprehensive in a certain sense [made precise by Segel and<br />

Slemrod (1988)]. More important, in <strong>the</strong> latter pro<strong>of</strong> it was required that Eo/S o be<br />

small--instead <strong>of</strong> Eo/(S o + K,,).<br />

LITERATURE<br />

Fersht, A. 1985. Enzyme Structure and Mechanism, 2nd Edn. New York: W. F. Freeman.<br />

Frenzen, C. L. and P. K. Maini. Kinetics for a two step enzymic reaction with comparable initial<br />

<strong>enzyme</strong> substrate ratios. Submitted for publication.<br />

Heineken, F., Tsuchiya, H. and Aris, R. 1967. "<strong>On</strong> <strong>the</strong> Ma<strong>the</strong>matical Status <strong>of</strong> <strong>the</strong> Pseudo-<br />

Steady State Hypo<strong>the</strong>sis <strong>of</strong> Biochemical Kinetics." Math. Biosci. 1, 95-113.<br />

Lin, C. C. and L. A. Segel. 1974. Ma<strong>the</strong>matics Applied to Deterministic Problems in <strong>the</strong> Natural<br />

Sciences. New York: MacMillan.<br />

Miller, H. K. and M. E. Balis. 1969. Glutaminase Activity <strong>of</strong> L-asparagine amidohydrolase."<br />

Biochem. Pharmacol. 18, 2225-2232.<br />

Murray, J. D. 1977. Lectures on Nonlinear Differential Equation Models in Biology. London:<br />

Clarendon Press.<br />

Odell, G. M. and L. A. Segel. 1987. BIOGRAPH. A Graphical Simulation Package With<br />

Exercises. To Accompany Lee A. Segers "Modeling Dynamic Phenomenon in Molecular and<br />

Cellular Biology." Cambridge: Cambridge University Press.<br />

Rubinow, S. I. 1975. Introduction to Ma<strong>the</strong>matical Biology. New York: Wiley.<br />

- - and J. L. Lebowitz. 1970. "Time-Dependent Michaelis-Menten Kinetics for an<br />

Enzyme-Substrate-Inhibitor System." J. Am. Chem. Soc. 92, 3888-3893.<br />

Segel, L. A. 1984. Modeling Dynamic Phenomena in Molecular and Cellular Biology. Cambridge:<br />

Cambridge University Press.<br />

- - and M. Slemrod. 1988. "The Quasi-Steady State Assumption: A Case Study in<br />

Perturbation." SlAM Review, in press.<br />

Sols, A. and Marco, R. 1970. "Concentrations <strong>of</strong> Metabolites and Binding Sites. Implications in<br />

Metabolic Regulation." In Current Topics in Cellular Regulation, Vol. 2. New York:<br />

Academic Press.<br />

Wong, J. T.-F. 1965. "<strong>On</strong> <strong>the</strong> Steady-State Method <strong>of</strong> Enzyme Kinetics." J. Am. Chem. Soc. 87,<br />

1788-1793.<br />

Received 29 March 1988

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