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Real time PCR-serotyping oligonucleotides

Real time PCR-serotyping oligonucleotides

Real time PCR-serotyping oligonucleotides

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CR931683<br />

(wzy )<br />

CR931685<br />

(wzy )<br />

CR931702<br />

(wzy )<br />

8626-8711<br />

9049-9274<br />

23A-F<br />

23A-R<br />

23A-Probe<br />

23F-F<br />

23F-R<br />

23F-Probe<br />

33F/33A/37-F<br />

33F/33A/37-R<br />

33F/33A/37-Probe<br />

CTCCCCTCCATTACCCATTTGG<br />

TGAAGAAAGTGCTGTTTGTGAACC<br />

AGCTAGAAC”T”CCCACACTCCCTACTCCCA ROX/CY5 5<br />

GACAGCAACGACAATAGTCATCTC<br />

TCCATCCCAACCTAACACACTTC<br />

ATTGTGTCCA"T"AACCCTTCGTCGTATTTCCAAAG<br />

GGAACTGGTTCAGCAACTATACG<br />

GGTTCTAAGACCGTCTGAAATACC<br />

CCCCAAATAGGAC"T"TTTCTGCCATGCCAAA<br />

ROX/CY5 5<br />

"T" 4 =BHQ2 BHQ2/BHQ3<br />

"T" 4 =BHQ2<br />

11778-11882<br />

4<br />

HEX<br />

"T" =BHQ1<br />

1- Abbreviations: FAM, 6-carboxyfluorescein; HEX, hexachloro-6-carboxyfluorescein; ROX, 6-carboxy-X-rhodamine; CY5, indodicarbocyanine; BHQ, black hole quencher.<br />

2- Locked nucleic acid nucleotides are underlined<br />

BHQ2/BHQ3<br />

3- The probe for serotype 2 is labeled with FAM for the triplex reaction formulated for the Africa and Latin America region(s) and HEX for the triplex reaction formulated for the USA and Asia regions; the probe for<br />

serotype 5 is labeled with FAM for the triplex reaction formulated for the USA and Asia regions and HEX for the triplex reaction formulated for the Africa and Latin America region(s) reaction set.<br />

4-"T"= black hole quencher placed internally on the thymidine base<br />

5- Probe is labeled with CY5 if ROX is used as a reference dye<br />

BHQ1<br />

200<br />

200<br />

100<br />

300<br />

300<br />

200<br />

200<br />

200<br />

200

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