ms2: A Molecular Simulation Tool for Thermodynamic Properties

More documents

Recommendations

Info

$Nanomechanical strength and fracture mechanisms of hierarchical ...$

(a) (b) (c) Figure 9: Communication between 32 processes executing the test case. The green color indicates calculations, the red color indicates communication. Figure (a) shows the summary time line for MC simulation, while the lower figures show the summary time line for MD simulation. Figure (b) exhibits the communication for one entire MD step, while (c) gives a magnified view on the communication pattern at the end of the time step. 38
Figure 10: Snapshot of ms2par generating an input (*.par) file for a MD simulation of pure liquid ethylene oxide. 39
Page 1 and 2: ms2: A Molecular Simulation Tool fo
Page 3 and 4: 2. Introduction Due to the advances
Page 5 and 6: 3. Simulation programms2 The simula
Page 7 and 8: sense that the specified chemical p
Page 9 and 10: 3.3.3. Chemical potential The chemi
Page 11 and 12: 3.3.6. Transport properties In ms2,
Page 13 and 14: −0.5 < x, y, z < 0.5. The advanta
Page 15 and 16: Q = 2aq. The electrostatic interact
Page 17 and 18: Programming (OOP). It should be men
Page 19 and 20: motion, kinetic energy calculation,
Page 21 and 22: • PGI pgf95 4 with ”-r8 -fastss
Page 23 and 24: memory scales linearly with the num
Page 25 and 26: Applyingms2par is simple and should
Page 27 and 28: Table 1: Computational demand for t
Page 29 and 30: Table 3: NEC SX8R ”ftrace” prof
Page 31 and 32: i r ij ij Figure 2: Schematic of t
Page 33 and 34: Figure 4: UML class diagram of ms2,
Page 35 and 36: Figure 6: Runtime for the equimolar
Page 37: (a) (b) Figure 8: ms2 runtime of th
Page 41 and 42: Figure 12: Snapshot of a ternary mi
Page 43 and 44: [24] Eckl, B., Vrabec, J., and Hass
Page 45 and 46: Supplementary Material to ms2: A Mo
Page 47 and 48: The partial derivative of the resid
Page 49 and 50: 2. Details ofms2 This section provi
Page 51 and 52: where u µRF i is its contribution
Page 53 and 54: 3. Modular structure - example The
Page 55 and 56: Table 2 continued Parameter Option
Page 57 and 58: An example for a *.par file is give
Page 59 and 60: Table 4: Parameters and options spe
Page 61: References [1] Allen, M. and Tildes

ms2: A Molecular Simulation Tool for Thermodynamic Properties

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?