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Molecular phylogeny of Psilocybe cyanescens complex in Europe ...

Molecular phylogeny of Psilocybe cyanescens complex in Europe ...

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B. LSU D1 doma<strong>in</strong><br />

Maximum likelihood<br />

GTR model<br />

bootstraps<br />

ML/MP<br />

<strong>Psilocybe</strong> moravica (P06)<br />

100/- <strong>Psilocybe</strong> arcana (P05*)<br />

96/- P. moravica var. sternberkiana (P07)<br />

99/78<br />

<strong>Psilocybe</strong> bohemica (P14)<br />

<strong>Psilocybe</strong> serbica (P15)<br />

75<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P21*)<br />

Weraroa novae-zelandiae<br />

<strong>Psilocybe</strong> azurescens (P01*)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong><br />

80<br />

<strong>Psilocybe</strong> azurescens (P01*)<br />

<strong>Psilocybe</strong> subaerug<strong>in</strong>osa<br />

Weraroa novae-zelandiae<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P21*) C. LSU D1 doma<strong>in</strong><br />

<strong>Psilocybe</strong> australiana Maximum parsimony<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong><br />

<strong>Psilocybe</strong> serbica (P15)<br />

<strong>Psilocybe</strong> arcana (P05*)<br />

78<br />

<strong>Psilocybe</strong> moravica (P06)<br />

<strong>Psilocybe</strong> moravica var. sternberkiana (P07)<br />

85/dt<br />

<strong>Psilocybe</strong> australiana<br />

<strong>Psilocybe</strong> quebecensis<br />

<strong>Psilocybe</strong> subaerug<strong>in</strong>osa<br />

<strong>Psilocybe</strong> bohemica (P14)<br />

<strong>Psilocybe</strong> quebecensis<br />

65/51 98/- <strong>Psilocybe</strong> cubensis<br />

62/- <strong>Psilocybe</strong> subcubensis<br />

A. morphology tree<br />

97/97 <strong>Psilocybe</strong> cubensis<br />

<strong>Psilocybe</strong> cubensis<br />

bootstraps m<strong>in</strong>imum evolution/<br />

66/69 64/62 <strong>Psilocybe</strong> cubensis<br />

maximum parsimony<br />

<strong>Psilocybe</strong> subaerug<strong>in</strong>osa<br />

100/97 P. moravica<br />

<strong>Psilocybe</strong> semilanceata<br />

100/99 P. m. var. stenberkiana<br />

<strong>Psilocybe</strong> fimetaria<br />

73/dt P. bohemica<br />

<strong>Psilocybe</strong> l<strong>in</strong>iformans<br />

88/91 <strong>Psilocybe</strong> tampanensis<br />

P. serbica<br />

<strong>Psilocybe</strong> argentipes<br />

65/dt P. arcana<br />

99/98<br />

<strong>Psilocybe</strong> fasciata<br />

P. <strong>cyanescens</strong><br />

Panaleolus ulig<strong>in</strong>osus<br />

P. azurescens<br />

<strong>Psilocybe</strong> semilanceata<br />

P. cubensis<br />

0.1<br />

Stropharia semiglobata<br />

Hypholoma udum<br />

<strong>Psilocybe</strong> pseudobullacea<br />

P. bohemica<br />

Flammula alnicola<br />

Flammula alnicola<br />

72/81<br />

Hebeloma aff<strong>in</strong>e<br />

E. Elongation factor EF<br />

Maximum likelihood (nt)<br />

P.<br />

P.<br />

bohemica<br />

arcana<br />

0.01<br />

GTR model<br />

bootstraps<br />

ML/MP<br />

100/100<br />

D. ITS<br />

Maximum parsimony (nt)<br />

bootstraps<br />

MP/ML (GTR model)<br />

10<br />

75/83<br />

100/100<br />

100/100<br />

100/99<br />

89/93<br />

100/81<br />

91/100<br />

Galer<strong>in</strong>a badipes<br />

Galer<strong>in</strong>a atk<strong>in</strong>sonia<br />

<strong>Psilocybe</strong> moravica var. sternberkiana (P07)<br />

<strong>Psilocybe</strong> serbica (P15)<br />

<strong>Psilocybe</strong> arcana (P05*)<br />

<strong>Psilocybe</strong> arcana (P05)<br />

<strong>Psilocybe</strong> moravica (P06)<br />

<strong>Psilocybe</strong> bohemica (P14)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P21)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P02)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong><br />

<strong>Psilocybe</strong> azurescens (P01)<br />

<strong>Psilocybe</strong> semilanceata<br />

<strong>Psilocybe</strong> semilanceata<br />

<strong>Psilocybe</strong> semilanceata<br />

<strong>Psilocybe</strong> fasciata<br />

<strong>Psilocybe</strong> samuiensis<br />

Fig. 1 Phylogenetic trees as <strong>in</strong>ferred from various molecular and<br />

morphological data. a M<strong>in</strong>imum evolution tree based on morphological,<br />

phenological and ecological data (bootstraps m<strong>in</strong>imum evolution/<br />

maximum parsimony; both 1,000 replicates). b Maximum likelihood<br />

tree (loglk=−2707.37145; gamma shape 0.015; proportion <strong>of</strong> <strong>in</strong>variant<br />

sites 0.000) based on partial LSU rDNA sequences. c Topology <strong>of</strong><br />

species <strong>of</strong> <strong>in</strong>terest as <strong>in</strong>ferred by maximum parsimony method. d<br />

azurescens, and group 2 encompass<strong>in</strong>g P. serbica, P.<br />

bohemica, P. arcana and P. moravica (<strong>in</strong>clud<strong>in</strong>g its var.<br />

sternbekiana). The latter group is very well supported by<br />

bootstrap values. Furthermore, the taxa <strong>of</strong> the second group<br />

do not differ among each other <strong>in</strong> the sequence <strong>of</strong> all three<br />

DNA markers. We have also analyzed concatenated <strong>in</strong>trons<br />

from EF1α and have obta<strong>in</strong>ed the same topology as from<br />

the cod<strong>in</strong>g sequence (not shown). The absence <strong>of</strong> DNA<br />

polymorphism among the taxa <strong>of</strong> the P. serbica <strong>complex</strong> <strong>in</strong><br />

0.1<br />

57/61<br />

70/63<br />

-/51<br />

67/100<br />

<strong>Psilocybe</strong> moravica var. sternberkiana (P07)<br />

<strong>Psilocybe</strong> bohemica (P14)<br />

<strong>Psilocybe</strong> moravica (P06)<br />

<strong>Psilocybe</strong> serbica (P15)<br />

<strong>Psilocybe</strong> arcana (P05*)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P21)<br />

<strong>Psilocybe</strong> <strong>cyanescens</strong> (P02)<br />

100/100 <strong>Psilocybe</strong> azurescens (P01*)<br />

Asterophora parasitica<br />

Tephrocybe gibberosa<br />

Clitocybe nebularis<br />

Collybia tuberosa<br />

Anthracophyllum archeri<br />

Marasmius alliaceus<br />

Hygrophoropsis aurantiaca<br />

Hebeloma cyl<strong>in</strong>drosporum<br />

Phaeomarasmius proximans<br />

Mythicomyces corneipes<br />

Lyophyllum caerulescens<br />

Exidia glandulosa<br />

Amanita brunnescens<br />

Mycol Progress<br />

Maximum likelihood tree (loglk = −1938.37061; gamma shape 0.496;<br />

proportion <strong>of</strong> <strong>in</strong>variant sites 0.386) as <strong>in</strong>ferred from ITS1+5.8 S+ITS2<br />

sequences. e Maximum likelihood tree (loglk=−1693.32043; gamma<br />

shape 1.026; proportion <strong>of</strong> <strong>in</strong>variant sites 0.509) as <strong>in</strong>ferred from<br />

nucleotide sequences cod<strong>in</strong>g for elongation factor 1−α (EF1α).<br />

Numbers above branches <strong>in</strong>dicate ML/MP bootstraps (number <strong>of</strong><br />

replicates 300/1,000)<br />

studied markers <strong>in</strong>dicates that these taxa represent, <strong>in</strong> fact, a<br />

s<strong>in</strong>gle species despite their phenotypic variability.<br />

In general, molecular markers can successfully uncover<br />

the existence <strong>of</strong> cryptic species. Such species do not display<br />

morphological variation but can be well dist<strong>in</strong>guished<br />

thanks to the polymorphism <strong>of</strong> DNA markers (Geiser et<br />

al. 1998; Roy et al. 1998; Cruse et al. 2002). In our case,<br />

however, the opposite situation seems to be at hand: a<br />

group <strong>of</strong> morphologically dist<strong>in</strong>guishable fungal taxa that

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