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Computational Chemistry Benchmarks - Nvidia

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Recommended GPU Node Configuration for<br />

AMBER <strong>Computational</strong> <strong>Chemistry</strong><br />

Workstation or Single Node Configuration<br />

# of CPU sockets 2<br />

Cores per CPU socket<br />

4+ (1 CPU core drives 1 GPU)<br />

CPU speed (Ghz) 2.66+<br />

System memory per node (GB) 16<br />

GPUs<br />

# of GPUs per CPU socket<br />

Kepler K10, K20, K20X<br />

Fermi M2090, M2075, C2075<br />

1-2<br />

(4 GPUs on 1 socket is good<br />

to do 4 fast serial GPU runs)<br />

GPU memory preference (GB) 6<br />

GPU to CPU connection<br />

PCIe 2.0 16x or higher<br />

Server storage<br />

Network configuration<br />

2 TB<br />

Infiniband QDR or better<br />

28<br />

Scale to multiple nodes with same single node configuration<br />

AMBER Benchmark Report, Revision 2.0, dated Nov. 5, 2012

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