Abstract TraitMill - The R Project for Statistical Computing
Abstract TraitMill - The R Project for Statistical Computing
Abstract TraitMill - The R Project for Statistical Computing
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
<strong>Abstract</strong><br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
<br />
!!"<br />
<br />
<br />
<br />
<br />
UseR Conference Vienna 14-17 June 2006 1<br />
UseR Conference Vienna 14-17 June 2006 2<br />
<strong>TraitMill</strong>: Greenhouse<br />
<strong>TraitMill</strong>: Plant imaging<br />
UseR Conference Vienna 14-17 June 2006 3<br />
UseR Conference Vienna 14-17 June 2006 4
<strong>TraitMill</strong>: Seed processing<br />
Dataflows in <strong>TraitMill</strong><br />
Field trials<br />
Lead identification<br />
Gene and<br />
promoter<br />
selection<br />
LIMS<br />
Vector<br />
construction<br />
Crop<br />
trans<strong>for</strong>mation<br />
Seed measurements<br />
Quality check by Q-PCR.<br />
Seed counting<br />
Plant handling<br />
Image analysis<br />
Plant imaging<br />
UseR Conference Vienna 14-17 June 2006 5<br />
UseR Conference Vienna 14-17 June 2006 6<br />
Architecture of the LIMS<br />
Screenshot<br />
(<br />
!%<br />
& <br />
' <br />
&<br />
<br />
<br />
!""#<br />
<br />
$ <br />
%$<br />
$ <br />
$<br />
#$<br />
<br />
UseR Conference Vienna 14-17 June 2006 7<br />
UseR Conference Vienna 14-17 June 2006 8
Screenshot<br />
Architecture of the LIMS<br />
(<br />
!%<br />
& <br />
' <br />
&<br />
<br />
<br />
!""#<br />
+<br />
&<br />
<br />
&<br />
$ <br />
%$<br />
<br />
$ <br />
$<br />
#$<br />
,<br />
<br />
<br />
<br />
!""#<br />
!"#<br />
<br />
&<br />
'(<br />
)<br />
)*<br />
<br />
<br />
UseR Conference Vienna 14-17 June 2006 9<br />
UseR Conference Vienna 14-17 June 2006 10<br />
Screenshot<br />
Methods used<br />
UseR Conference Vienna 14-17 June 2006 11<br />
- ,<br />
- !<br />
- , <br />
- " <br />
- 3 <br />
- ' <br />
- ,4 <br />
<br />
- <br />
- ./0<br />
- <br />
- !1""<br />
- <br />
- <br />
- <br />
- <br />
- <br />
- <br />
- <br />
- <br />
- 2<br />
UseR Conference Vienna 14-17 June 2006 12
Decision support<br />
Main challenges<br />
- 5 <br />
- !464./670<br />
- 5<br />
- 5 7. 80<br />
- <br />
- +<br />
- * 7 <br />
- "4<br />
- ,4 <br />
UseR Conference Vienna 14-17 June 2006 13<br />
UseR Conference Vienna 14-17 June 2006 14<br />
Arguments <strong>for</strong> choosing R<br />
Argument against choosing R<br />
+<br />
<br />
9 <br />
" %<br />
)%<br />
:<br />
*; <br />
1 <br />
Positive experience with R<br />
Negative experiences with R<br />
<br />
1 <br />
<br />
#7 <br />
<br />
* <br />
= 7 <br />
& <br />
4<br />
*% <br />
<br />
5 <br />
UseR Conference Vienna 14-17 June 2006 17<br />
UseR Conference Vienna 14-17 June 2006 18<br />
Conclusion<br />
<br />
<br />
1>;<br />
7<br />
<br />
UseR Conference Vienna 14-17 June 2006 19