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Abstract TraitMill - The R Project for Statistical Computing

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<strong>Abstract</strong><br />

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UseR Conference Vienna 14-17 June 2006 1<br />

UseR Conference Vienna 14-17 June 2006 2<br />

<strong>TraitMill</strong>: Greenhouse<br />

<strong>TraitMill</strong>: Plant imaging<br />

UseR Conference Vienna 14-17 June 2006 3<br />

UseR Conference Vienna 14-17 June 2006 4


<strong>TraitMill</strong>: Seed processing<br />

Dataflows in <strong>TraitMill</strong><br />

Field trials<br />

Lead identification<br />

Gene and<br />

promoter<br />

selection<br />

LIMS<br />

Vector<br />

construction<br />

Crop<br />

trans<strong>for</strong>mation<br />

Seed measurements<br />

Quality check by Q-PCR.<br />

Seed counting<br />

Plant handling<br />

Image analysis<br />

Plant imaging<br />

UseR Conference Vienna 14-17 June 2006 5<br />

UseR Conference Vienna 14-17 June 2006 6<br />

Architecture of the LIMS<br />

Screenshot<br />

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UseR Conference Vienna 14-17 June 2006 7<br />

UseR Conference Vienna 14-17 June 2006 8


Screenshot<br />

Architecture of the LIMS<br />

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UseR Conference Vienna 14-17 June 2006 9<br />

UseR Conference Vienna 14-17 June 2006 10<br />

Screenshot<br />

Methods used<br />

UseR Conference Vienna 14-17 June 2006 11<br />

- ,<br />

- !<br />

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- 3 <br />

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- ,4 <br />

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UseR Conference Vienna 14-17 June 2006 12


Decision support<br />

Main challenges<br />

- 5 <br />

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- 5<br />

- 5 7. 80<br />

- <br />

- +<br />

- * 7 <br />

- "4<br />

- ,4 <br />

UseR Conference Vienna 14-17 June 2006 13<br />

UseR Conference Vienna 14-17 June 2006 14<br />

Arguments <strong>for</strong> choosing R<br />

Argument against choosing R<br />

+<br />

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9 <br />

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)%<br />

:<br />

*; <br />

1 <br />


Positive experience with R<br />

Negative experiences with R<br />

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1 <br />

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#7 <br />

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* <br />

= 7 <br />

& <br />

4<br />

*% <br />

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5 <br />

UseR Conference Vienna 14-17 June 2006 17<br />

UseR Conference Vienna 14-17 June 2006 18<br />

Conclusion<br />

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1>;<br />

7<br />

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UseR Conference Vienna 14-17 June 2006 19

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