Annual Report - Center for Food Safety Engineering - Purdue ...
Annual Report - Center for Food Safety Engineering - Purdue ...
Annual Report - Center for Food Safety Engineering - Purdue ...
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The <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>g<br />
2006 - 2007 Research <strong>Report</strong><br />
“Collaborating to make our food safer”
The mission of the <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong><br />
<strong>Engineering</strong> is to develop new knowledge,<br />
technologies and systems <strong>for</strong> detection<br />
and prevention of chemical and microbial<br />
contamination of foods.<br />
Through CFSE, <strong>Purdue</strong> University positions<br />
itself as a national leader in multidisciplinary<br />
food safety research. Our multidisciplinary<br />
approach, including a strong<br />
engineering component, makes <strong>Purdue</strong><br />
University truly unique.
2006-2007 Research <strong>Report</strong><br />
2 Welcome from the Director<br />
2 Message from USDA<br />
3 A discussion with Dan Fung:<br />
The past, present, and future of microbial detection<br />
4 <strong>Engineering</strong> of biosystems <strong>for</strong> the detection of Listeria monocytogenes in foods<br />
• Michael Ladisch, Rashid Bashir, Arun Bhunia, J. Paul Robinson<br />
6 Multipathogen screening using immunomicroarry<br />
• Arun Bhunia, Mark Morgan, B.K. Hahm, Andrew Gehring<br />
7 Optical biosensors <strong>for</strong> food pathogen detection<br />
• Arun Bhunia, Mark Morgan, Viswaprakash Nanduri, Andrew Gehring, Shu-I Tu<br />
8 Optical <strong>for</strong>ward scattering <strong>for</strong> bacterial colony differentiation and identifi cation<br />
• Arun Bhunia, E. Daniel Hirleman, J. Paul Robinson<br />
9 Immunocapture real-time PCR to detect mycotoxigenic mold spores in grains<br />
• Maribeth Cousin, Charles Woloshuk<br />
10 Nanoparticle based DNA multiplexed probes <strong>for</strong> pathogen detection using confocal<br />
raman microscopy<br />
• Joseph Irudayaraj<br />
11 Rapid, quantitative, and reusable immunosensors <strong>for</strong> bacteria detection on a<br />
microfl uidic plat<strong>for</strong>m<br />
• Chang Lu, Arun Bhunia, Zhongyang Cheng<br />
12 Continuous monitoring of chemical agents in aqueous media using bioreporterbased<br />
sensors<br />
• David Nivens, Michael Franklin, Carlos Corvalan<br />
13 Scientifi c Publications and Presentations<br />
16 <strong>Center</strong> Staff<br />
Visit us @ www.cfse.purdue.edu
Welcome from the Director<br />
The <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong> (CFSE) celebrates its seventh anniversary. Our<br />
collaboration with USDA-ARS Eastern Regional Research Laboratory continues to breed success<br />
and has led to 21 peer-reviewed research publications and 22 presentations and proceedings<br />
this year. <strong>Purdue</strong> and USDA-ARS scientists teamed up and presented a series of lectures <strong>for</strong><br />
“Molecular Day” at Kansas State University’s 27 th annual Rapid Methods and Automation in<br />
Microbiology Workshop. This ef<strong>for</strong>t alone led to a series of 11 peer-reviewed manuscripts published<br />
in the March and June issues of the Journal of Rapid Methods and Automation in Microbiology.<br />
Dr. Richard H. Linton<br />
Director of the <strong>Center</strong> <strong>for</strong><br />
<strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
Our scientists continue to work on technology plat<strong>for</strong>ms to improve microbial and chemical<br />
detection. Research is being done to develop detection systems <strong>for</strong> many bacterial pathogens,<br />
including Listeria monocytogenes, Escherichia coli O157:H7, Campylobacter spp., Salmonella spp.,<br />
and <strong>for</strong> chemical toxins like arsenite. We are utilizing different technologies to improve detection<br />
capabilities, including enzyme-linked immunosorbant assays, polymerase chain reactions,<br />
impedance-based microbiology, infrared spectroscopy, scanning microscopy, confocal Raman<br />
microscopy, bioluminescense, DNA/RNA probes, and bioreporter-based chemical sensors.<br />
One of our most signifi cant breakthroughs this year was the further development of the BActeria<br />
Rapid Detection using Optical scattering Technology, or BARDOT system. This technology uses<br />
optical <strong>for</strong>ward scattering techniques to identify different microorganisms after scanning colonies<br />
that grow on an agar surface. The resulting image produces a “fi ngerprint” that can be used to<br />
specifi cally identify organisms of interest.<br />
I continue to be impressed with the collaborative research ef<strong>for</strong>t of <strong>Purdue</strong> University and USDA-<br />
ARS scientists and feel privileged to serve as director of the center. If you are interested in learning<br />
more about CFSE, please visit our Web site at www.cfse.purdue.edu, or feel free to contact me<br />
directly.<br />
Message from USDA<br />
Dr. Shu-I Tu<br />
Supervisory Research<br />
Chemist USDA-ARS,<br />
Eastern Regional<br />
Research <strong>Center</strong><br />
As the collaboration between the <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong> (CFSE) at <strong>Purdue</strong> University<br />
and the Eastern Regional Research <strong>Center</strong> (ERRC) of the Agricultural Research Service (ARS)<br />
enters its eighth year, I am grateful to witness the growth and maturation of this collaborative<br />
arrangement. In 2007, we were pleased to learn that the research of the <strong>Purdue</strong> team has been<br />
selected <strong>for</strong> the ARS OSQR (Offi ce of Scientifi c Quality Review) process. This process is normally<br />
conducted <strong>for</strong> ARS in-house research projects. Thus, this selection signals that the <strong>Purdue</strong> project<br />
is now considered an integral part of ARS research ef<strong>for</strong>ts. I am proud to witness the continual<br />
growth of our <strong>Purdue</strong> colleagues’ research impact. Together, our <strong>Purdue</strong>-ERRC team has received<br />
increased recognition as an important contributor to the technology advancement of pathogen<br />
detection in food as evident by the invitation from the International Workshop on Rapid Methods and<br />
Automation in Microbiology to conduct a half-day symposium on molecular methodologies in August<br />
2006 and again in June 2007. We were pleased that a dedicated issue of the Journal of Rapid<br />
Methods and Automation in Microbiology to report the progress of our collaborative team has been<br />
published. More recently, our collaboration has attracted interest from the National <strong>Food</strong> <strong>Safety</strong><br />
<strong>Center</strong> of China. They have expressed a desire to <strong>for</strong>m an international collaboration arrangement<br />
under the general agreement between USDA and the Ministry of Science and Technology, China<br />
(MOST). Dr. Xianming Shi, the deputy director of the Chinese <strong>Food</strong> <strong>Safety</strong> <strong>Center</strong>, plans to attend<br />
our joint annual meeting this year at <strong>Purdue</strong> in October. I am looking <strong>for</strong>ward to this opportunity to<br />
expand the ARS-<strong>Purdue</strong> collaboration into an international enterprise.<br />
2<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
A discussion with Dan Fung:<br />
The past, present, and future of microbial detection<br />
Dr. Fung started his career in microbial detection as a graduate student at the University of North<br />
Carolina-Chapel Hill when his professor asked him to identify several hundred cultures of bacteria<br />
from sewage. The work was so tedious that Dan thought “there must be a better way to do<br />
microbiology!” He then traveled to Iowa State University and pursued his Ph.D. working under Dr.<br />
Paul Hartman, whom Dan considers his mentor. Here, Dan began research on miniaturization of<br />
microbiology tests and developed the Miniaturized Microbiological Cultural and Viable Cell Count<br />
systems. Forty years later, Dr. Fung is recognized as a worldwide leader in microbial detection. He<br />
just completed advising his 100th graduate student; has instructed over 18,000 people; has lectured<br />
throughout the world; and has authored over 800 publications.<br />
This summer, Dan completed his 27th annual workshop on rapid methods at Kansas State University,<br />
which is a program that has attracted over 4,000 participants from more than 60 countries. In 2005,<br />
Dan fi rst invited a team from <strong>Purdue</strong> University and USDA-ARS to participate in his workshop. CFSE<br />
has now participated in this program <strong>for</strong> the past three years. We are glad <strong>for</strong> the opportunity and<br />
embrace our collaboration with Dr. Fung.<br />
We had a chance to catch up with Dan and ask him the following questions:<br />
1. What do you consider to be the most significant breakthroughs related to microbial detection in the<br />
past 40 years?<br />
Dr. Dan Fung<br />
Kansas State<br />
University<br />
• “Miniaturization from test tubes, miniaturized chambers, microwells, microarrays,<br />
biosensors, and nanotechnologies has greatly improved the capacity to<br />
study thousands of samples in a much more effi cient manner.<br />
• The effective use of ELISA tests, instrumentation, sensors, PCR, microarrays, microchips,<br />
biochips, nanotechnology, and a variety of physical, chemical, biochemical methods.<br />
• Ingenious and effective sampling technologies <strong>for</strong> food, water, air, medical, environmental, and<br />
industrial samples have greatly helped to make analyses more accurate and effi cient.”<br />
2. What was your most significant research finding or contribution?<br />
• “Miniaturization of microbial techniques (cultural methods and viable cell counts<br />
methods) directly and indirectly infl uenced the revolution of diagnostic kits<br />
and procedures in medical, food and environmental microbiology.<br />
• Development of detection methods <strong>for</strong> staphylococcal enterotoxins, Listeria<br />
monocytogenes, Escherichia coli O157:H7, and Clostridium perfringens.<br />
• Creation of dye-containing media <strong>for</strong> the rapid detection and differentiation of bacteria, yeast, and molds.<br />
• Advancement and promotion of enzymes systems, such as Oxyrase,<br />
<strong>for</strong> stimulating the rapid growth of foodborne pathogens.”<br />
3. Where have we made progress, and where have we failed to make progress?<br />
“We have made great progress in sample preparation and rapid detection of target molecules and cells by a<br />
variety of sophisticated technologies and approaches. We now can identify microorganisms and classify them<br />
to the species, subspecies, and molecular levels very effi ciently. We have not been able to effectively separate<br />
target organisms from the background food systems yet. And, there is no instant, on-line test <strong>for</strong> pathogens<br />
and may never be since microorganisms are so small compared with the food matrix. We still have much to<br />
do.”<br />
4. What technologies or approaches do you feel have the most promise <strong>for</strong> the future?<br />
“It depends on what you want to fi nd. I do believe nanotechnologies developed and used properly can greatly<br />
assist in the development of rapid detection and enumeration of pathogenic and non-pathogenic organisms. I<br />
think this is our future.”<br />
5. What do you think our greatest challenges will be in the future?<br />
“I think we need to be able to:<br />
• Predict and detect the arrival of new and exotic microorganisms.<br />
• Control or eliminate pathogenic organisms better in food systems.<br />
• Educate and stimulate another generation of bright people to put their minds<br />
together to solve the problems at hand and the problems unseen.”<br />
3<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
La<br />
di<br />
sc<br />
h,<br />
Bas<br />
hi<br />
r,<br />
Bhu<br />
huni<br />
a and Ro<br />
bi<br />
nson<br />
<strong>Engineering</strong> of biosystems <strong>for</strong> the detection<br />
of Listeria monocytogenes in foods<br />
Investigators: Michael Ladisch (Department of Agricultural and Biological <strong>Engineering</strong>), Rashid Bashir (School of Electrical and Computer<br />
<strong>Engineering</strong>), Arun Bhunia (Department of <strong>Food</strong> Science), J. Paul Robinson (Weldon School of Biomedical <strong>Engineering</strong>)<br />
Project Rationale<br />
Current methods <strong>for</strong> detecting L. monocytogenes rely upon<br />
enrichment procedures to increase bacterial numbers <strong>for</strong><br />
detection. The food or food extract is incubated in a special<br />
growth medium <strong>for</strong> 12 to 24 hours, and the resulting culture is<br />
tested <strong>for</strong> L. monocytogenes using procedures that require an<br />
additional 3 to 24 hours. An overall time of 2 to 3 days is typical<br />
of the time that elapses between when the food is sampled<br />
and when the test results are available. The elapsed time,<br />
referred to as time to result or TTR, is problematic since some<br />
perishable, ready-to-eat foods are consumed be<strong>for</strong>e test results<br />
would be available. Rapid and af<strong>for</strong>dable technologies to detect<br />
low numbers of L. monocytogenes cells directly from food and to<br />
distinguish living from dead cells are needed.<br />
This multi-disciplinary, multi-departmental research project is<br />
addressing the fundamental engineering and science required<br />
<strong>for</strong> developing a microchip that is capable of rapidly detecting L.<br />
monocytogenes at the point of use. Our primary goals are to<br />
establish microscale detection of L. monocytogenes on a realtime<br />
basis with a time to result of 4 hours and to reduce the<br />
time of bacterial culture steps with rapid cell concentration and<br />
recovery based on membrane technology.<br />
Our multidisciplinary research team is addressing the<br />
development, engineering and validation of the microchip<br />
system that combines bioseparation and bionanotechnology.<br />
Bioseparations technology will allow rapid concentration and<br />
recovery of microbial cells. Bionanotechnology enables the<br />
construction of systems capable of interrogating fluids <strong>for</strong><br />
pathogens. The combination of the two technologies facilitates<br />
devices <strong>for</strong> rapid processing and detection of food pathogens.<br />
Project Objectives<br />
• Develop a system <strong>for</strong> rapid cell concentration and recovery.<br />
Improve membrane chemistry and methodology <strong>for</strong><br />
handling complex food samples presented by blended<br />
hotdog, hamburger, vegetables, milk, and meat and<br />
decrease the volume in which the cells are captured by<br />
selecting or constructing the appropriate membrane design<br />
and combining with other bioseparation techniques.<br />
• Correlate media composition to changes in growth<br />
characteristics and metabolism of L. monocytogenes cells<br />
(recovery of stressed cells, capture from mixed cultures,<br />
increase sensitivity through decreasing media conductance)<br />
and develop media that enhance pathogenic cell response<br />
to detection methods. We also are interested in developing<br />
low conductivity media <strong>for</strong> enhanced capture and detection<br />
of stressed cells by antibodies and other bioreceptors.<br />
• Combine antibody-based capture and growth detection<br />
<strong>for</strong> the biochip. Integrated devices have been designed<br />
and microfabricated to combine ATP, pH, and/or direct<br />
nucleotide and antibody-based detection on-chip using<br />
multi-channel, multi-functional designs. The intent<br />
is to obtain biochips that sense multiple parameters<br />
simultaneously and improve DEP (di-electrophoresis)-<br />
based selective capture of L. monocytogenes and other<br />
pathogens in mixtures of cells. Then we will test <strong>for</strong><br />
sensitivity of detection and selectivity of capture.<br />
4<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“Our multidisciplinary research team is addressing the development, engineering and<br />
validation of the microchip system that combines bioseparation and bionanotechnology.”
Ladi<br />
disc<br />
sch,<br />
Bas<br />
ashi<br />
r, Bhu<br />
huni<br />
a an<br />
d Ro<br />
bi<br />
ns<br />
on<br />
Project Highlights<br />
The concentration and recovery of microbial cells <strong>for</strong> analysis<br />
requires rapid recovery of viable cells while minimizing retention<br />
or loss of cells during processing. This work further extended<br />
the methods <strong>for</strong> achieving rapid concentration of homogenized<br />
or stomached food samples. We showed the utility of using<br />
a small hollow fi ber module with an internal volume of 23 or<br />
101 μL. The module is operated in a dead-end mode <strong>for</strong> the<br />
rapid concentration and recovery of various types of microbial<br />
cells in a small sample volume that is compatible with microscale<br />
detection systems. Tests were carried out with Bacillus<br />
thuringiensis DUP-6040, Escherichia coli K12, Listeria<br />
innocua FY248, Pseudomonas fl uorescens ATCC13525, and<br />
Streptococcus faecalis CG110 in PBS at initial concentrations of<br />
100 cfu/mL as well as E. coli or L. innocua in washing solution<br />
from hotdogs (i.e., massaged hotdog solution). After treating<br />
massaged hotdogs with protease and lipase, up to 53% recovery<br />
of viable cells at a concentration of 10 5 to 10 6 cfu/mL in a 100<br />
μL sample was achieved when E. coli and L. innocua cells<br />
were concentrated from a 250 mL massaged hotdog solution<br />
containing an initial microbe concentration of 600 to 900 cfu/<br />
mL. The design and fabrication of hollow fi ber modules and<br />
membrane/microbe interactions during cell concentration and<br />
recovery was developed to achieve reproducible devices and<br />
rapid concentration of the cells.<br />
“The design and fabrication of hollow fiber modules and membrane/<br />
microbe interactions during cell concentration and recovery was developed to<br />
achieve reproducible devices and rapid concentration of the cells.”<br />
5<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Bh<br />
unia<br />
, Mo<br />
rgan<br />
an, Ha<br />
hm and<br />
Geh<br />
ring<br />
Multipathogen screening using immunomicroarry<br />
Investigators: Arun Bhunia (Department of <strong>Food</strong> Science), Mark Morgan (Department of <strong>Food</strong> Science),<br />
B.K. Hahm (Department of <strong>Food</strong> Science), Andrew Gehring (USDA)<br />
Project Rationale<br />
Antibody-based methods are widely regarded as rapid and<br />
effi cient <strong>for</strong> detecting pathogenic foodborne bacteria. Application<br />
of conventional ELISA-based assays and further adaptation in<br />
modern biosensor tools show promise <strong>for</strong> rapid detection. Most<br />
assays are developed <strong>for</strong> detection of a single target pathogen<br />
or toxin. As a result, these methods can be very expensive<br />
when testing <strong>for</strong> multiple pathogens because separate assay<br />
methods are required. In addition, large laboratory space is<br />
required to per<strong>for</strong>m separate tests <strong>for</strong> each target pathogen,<br />
and separate enrichment reagents and procedures are needed<br />
<strong>for</strong> each pathogen detection method. The development of a<br />
single test capable of detecting multiple pathogens, enriched in<br />
a single enrichment broth, will reduce costs and provide needed<br />
results in a short period of time. This technology would benefi t<br />
regulatory agencies and the food industry when evaluating food<br />
products <strong>for</strong> key food pathogens.<br />
Project Highlights<br />
For simultaneous growth and detection of Salmonella spp., E.<br />
coli O157:H7 and L. monocytogenes, our laboratory <strong>for</strong>mulated<br />
a selective enrichment broth SEL (Salmonella, E. coli O157:H7,<br />
and Listeria). This year we evaluated SEL <strong>for</strong> its suitability to<br />
recover pathogens from inoculated ready-to-eat meat samples<br />
(deli turkey and salami). We were impressed with the overall<br />
per<strong>for</strong>mance of SEL. When SEL per<strong>for</strong>mance was compared<br />
with the Universal Pre-enrichment Broth (UPB, a commercial<br />
multiplex medium), SEL per<strong>for</strong>mance was comparable. However,<br />
SEL was also able to inhibit the growth of food-associated<br />
spoilage or natural contaminants while UPB failed. These<br />
results indicate that SEL has the potential to be used as a single<br />
selective enrichment medium <strong>for</strong> multiple target pathogens.<br />
In the last decade, several rapid detection methods—such as<br />
antibody-based, nucleic acid-based, and biochemical-based—<br />
have been developed. Even though these methods have<br />
shortened analysis times, there is still a time requirement to use<br />
selective enrichment of samples prior to using conventional rapid<br />
detection methods. Antibody-based methods, such as ELISA,<br />
require a minimum of 10 6 CFU/ml <strong>for</strong> cell detection. To achieve<br />
that cell level, it is important to use proper enrichment media.<br />
Project Objectives<br />
• Develop a microarray assay in 96-well plate and glass<br />
slide using a sandwich immunoassay <strong>for</strong> Salmonella<br />
spp., E. coli O157:H7 and L. monocytogenes.<br />
• Optimize growth and enrichment of these pathogens<br />
(healthy or stressed) spiked into model food samples.<br />
• Evaluate per<strong>for</strong>mance of the Pathogen<br />
Enrichment Device (PED).<br />
6<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“This year we evaluated selective enrichment broth <strong>for</strong> its suitability to<br />
recover pathogens from inoculated ready-to-eat meat samples.”
Bhun<br />
unia<br />
, Mo<br />
rgan<br />
, Nand<br />
ndur<br />
i, Geh<br />
ehri<br />
ng and<br />
Tu<br />
Optical biosensors <strong>for</strong> food pathogen detection<br />
Investigators: Arun Bhunia (Department of <strong>Food</strong> Science), Mark Morgan (Department of <strong>Food</strong> Science), Viswaprakash Nanduri (Department of <strong>Food</strong> Science),<br />
Andrew Gehring (USDA), Shu-I Tu (USDA)<br />
Project Rationale<br />
Our goal was to develop a fi ber optic sensor <strong>for</strong> detecting<br />
foodborne pathogens, including Listeria monocytogenes,<br />
Escherichia coli O157:H7 and Salmonella Enteritidis. We have<br />
been able to develop a fi ber optic sensor <strong>for</strong> L. monocytogenes<br />
and E. coli O157:H7. We have also developed a sensitive<br />
and specifi c fi ber optic detection assay <strong>for</strong> S. Enteritidis<br />
in poultry. The assay was compared with time-resolved<br />
immunofl uorescence (TRF) <strong>for</strong> confi rmation. An effi cient multipathogen<br />
array, using a fl ow through immobilization protocol,<br />
has also been developed <strong>for</strong> detection of L. monocytogenes,<br />
E. coli and S. Enteritidis. Pilot studies are currently underway<br />
to study the binding effi ciencies of an antibody-pathogen<br />
complex using different surface chemistries in order to have a<br />
better understanding of the molecular nature of interactions.<br />
This approach will help us increase sensitivity and specifi city of<br />
binding on the sensor.<br />
Project Highlights<br />
The development of a fi ber optic biosensor <strong>for</strong> detection of S.<br />
Enteritidis was the most important accomplishment this year.<br />
The success of the project provides proof of the principle of<br />
detection of S. Enteritidis using an effi cient fl ow through antibody<br />
immobilization using a fi ber optic biosensor. The low detection<br />
level achieved also emphasizes that target specifi c antibodies<br />
developed in our laboratory can be used as bio-probes on fi ber<br />
optic sensor plat<strong>for</strong>ms.<br />
Project Objectives<br />
• Develop and evaluate an antibody-coupled fi ber optic<br />
biosensor [ANALYTE 2000] <strong>for</strong> detection of S. Enteritidis.<br />
• Develop an effi cient, multi-pathogen array<br />
using the fi ber optic biosensor.<br />
• Screen and identify monoclonal and polyclonal<br />
antibodies, developed in our laboratory, <strong>for</strong> L.<br />
monocytogenes, E. coli O157:H7 and S. Enteritidis.<br />
• Develop effi cient surface chemistry protocols <strong>for</strong> evaluation<br />
and quantifi cation of binding interactions of the antibodypathogen<br />
complex on the surface of the fi ber optic sensor.<br />
• Deploy the common selective (SEL) media developed in<br />
our laboratory <strong>for</strong> the enrichment of targeted pathogens.<br />
• Explore the viability of other biosensor plat<strong>for</strong>ms <strong>for</strong> the<br />
development of a multi-pathogen array biosensor.<br />
“The development of a fi ber optic biosensor <strong>for</strong> detection of S.<br />
Enteritidis was the most important accomplishment this year.”<br />
7<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Bhun<br />
unia<br />
ia, Hi<br />
rl<br />
eman<br />
and<br />
Rob<br />
obin<br />
inso<br />
n<br />
Optical <strong>for</strong>ward scattering <strong>for</strong> bacterial colony<br />
differentiation and identification<br />
Investigators: Arun Bhunia (Department of <strong>Food</strong> Science), E. Daniel Hirleman (School of Mechanical<br />
<strong>Engineering</strong>), J. Paul Robinson (Weldon School of Biomedical <strong>Engineering</strong>)<br />
Project Rationale<br />
The CDC estimates that 76 million people get sick, more than<br />
300,000 are hospitalized, and 5,000 Americans die each year<br />
from foodborne pathogen infections. Preventing foodborne<br />
illnesses remains a major public health challenge. Listeria<br />
monocytogenes, Escherichia coli, and Salmonella are three<br />
major foodborne pathogens of concern in the U.S. There has<br />
been an increase in foodborne illnesses, multiple outbreaks,<br />
product recalls, and loss of lives resulting from the association<br />
of pathogens in raw and processed, ready-to-eat food products.<br />
Bacterial contamination in products not only places the public<br />
at risk, but it is also costly to companies due to the loss of<br />
production time, product recalls and liability.<br />
For detecting and evaluating foods contaminated with L.<br />
monocytogenes or E. coli, USDA/FSIS recommends initial<br />
enrichment and subsequent plating on a selective agar media,<br />
which is often followed by further identifi cation procedures.<br />
These procedures are often time consuming and lengthy, since<br />
they take as much as 5 to 7 days. The present industrial demand<br />
is to increase the speed of the detection and to decrease<br />
economical losses and the chance of public health concerns.<br />
Our main objective was to develop a simple light scattering<br />
sensory method called the BARDOT (BActeria Rapid Detection<br />
using Optical scattering Technology) system in order to reduce<br />
the time of identifi cation of these pathogens after plating.<br />
Project Objectives<br />
• Improve the BARDOT design, including supporting<br />
physics-based models, <strong>for</strong> more repeatability and maximum<br />
discrimination of <strong>for</strong>ward scattering signatures of colonies.<br />
• Acquire scatter images of colonies of select<br />
foodborne bacterial colonies including pathogens.<br />
• Analyze bacterial colonies of different foodborne<br />
bacteria on non-selective and selective agar media.<br />
• Validate the technology by using inherently<br />
contaminated food samples and samples that have<br />
been inoculated with selected pathogens.<br />
• Analyze cellular composition, cell arrangement,<br />
refractive index and colony contents using<br />
electron microscopy, FT-IR or GC-MS.<br />
• Analyze the scatter signal images using “standard feature<br />
extraction” and “moments of shape analysis” methods.<br />
Project Highlights<br />
The most signifi cant accomplishment this year was the design<br />
of an automated BARDOT system and related algorithm. We<br />
introduced a model <strong>for</strong> optical <strong>for</strong>ward scattering by bacterial<br />
colony based on scalar diffraction theory. The model treats<br />
the colony as an amplitude/phase modulator and suggests<br />
macroscopic factors that cause the distinctive features shown<br />
in <strong>for</strong>ward scattering signatures of the three types of Listeria<br />
species. We used phase contrast and confocal microscopy<br />
to provide independent in<strong>for</strong>mation on the structure and<br />
morphology of the colonies that are fi xed parameters on the<br />
scattering model. We validated the experimental system using a<br />
chrome mask reference sample with known diffraction properties.<br />
Distinctive scattering patterns measured <strong>for</strong> three important<br />
species of Listeria were found to show good agreement with the<br />
model predictions. The results provide a physical explanation<br />
<strong>for</strong> the unique and distinctive scattering signatures produced<br />
by colonies of closely related Listeria species and support<br />
the effi cacy of <strong>for</strong>ward scattering <strong>for</strong> rapid detection and<br />
classifi cation of pathogens without the use of labeling molecules.<br />
This improvement has provided the groundwork <strong>for</strong> developing<br />
the portable, stand-alone type of bacterial characterization<br />
instrument now known as BARDOT.<br />
8<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“We introduced a model <strong>for</strong> optical <strong>for</strong>ward scattering by<br />
bacterial colony based on scalar diffraction theory.”
Co<br />
usin<br />
and<br />
Wol<br />
olos<br />
oshu<br />
huk<br />
Immunocapture real-time PCR to detect<br />
mycotoxigenic mold spores in grains<br />
Investigators: Maribeth Cousin (Department of <strong>Food</strong> Science), Charles Woloshuk (Department of Botany and Plant Pathology)<br />
Project Rationale<br />
Currently, there are few commercial rapid methods to detect<br />
molds and their spores in agricultural commodities, grains,<br />
and foods. In previous research, a protocol was developed to<br />
identify Fusarium species that produce two major mycotoxins,<br />
including fumonisins and trichothecenes. The antibodybased<br />
method was developed <strong>for</strong> Fusarium species to<br />
capture antigens of these mycotoxin-producers, which was<br />
then combined with a real-time PCR assay that was based<br />
on species-specifi c and genus-specifi c primers to identify the<br />
Fusarium species. The previous research was limited in spore<br />
capture effi ciency because the Fusarium spores were diffi cult<br />
to lyse <strong>for</strong> DNA release. We have designed this new project<br />
to help resolve these limitations by: 1) studying physical,<br />
enzymatic, and mechanical methods to break mold spores to<br />
release DNA <strong>for</strong> use in real-time PCR; and 2) incorporating<br />
the method into a immunocapture-qPCR method that uses<br />
antibodies produced against Fusarium graminearum and F.<br />
verticillioides and primers that are specifi c <strong>for</strong> the Tri6 gene<br />
involved in trichothecene biosynthesis and <strong>for</strong> the Fum1<br />
gene involved in fumonisin biosynthesis. This project was<br />
also designed to develop a library of PCR primers to other<br />
mycotoxigenic genera (Aspergillus that produce afl atoxins<br />
and ochratoxin and Penicillium that produce ochratoxin and<br />
patulin) <strong>for</strong> real-time PCR and to use these primers multiplex<br />
PCR <strong>for</strong>mats to detect all major mycotoxin producers in the<br />
same assay. Antibodies to afl atoxin-producing molds (Yong and<br />
Cousin, 2001) and Penicillium species (Tsai and Cousin, 1990)<br />
were produced in earlier CFSE-funded research.<br />
Project Objectives<br />
• Develop primer sets to detect Aspergillus<br />
and Penicillium species.<br />
• Determine specifi city and sensitivity of<br />
primer sets and multiplex <strong>for</strong>mat.<br />
• Experiment with different methods to break<br />
mold spores of Fusarium species.<br />
• Optimize the capture of mold spores and release of DNA<br />
and use to detect Fusarium species in foods and grains.<br />
Project Highlights<br />
We designed PCR probes specifi c to species of Aspergillus<br />
(three probes), Fusarium (one probe), and Penicillium (two<br />
probes). Multiple genus-probes are required to capture minor<br />
groups or individual species that have slight differences in<br />
their DNA sequence. We have determined the optimum PCR<br />
conditions to achieve specifi city under multiplex conditions and<br />
developed quantitative curves. The linear range of the probes<br />
was between 0.01 ng and 1000 ng of target DNA. Thus far, the<br />
major probes <strong>for</strong> each genus have been tested.<br />
“Currently, there are few commercial rapid methods to detect molds and<br />
their spores in agricultural commodities, grains, and foods.”<br />
9<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Irud<br />
uday<br />
ayar<br />
araj<br />
aj<br />
Nanoparticle based DNA multiplexed probes <strong>for</strong> pathogen<br />
detection using confocal raman microscopy<br />
Investigator: Joseph Irudayaraj (Department of Agricultural and Biological <strong>Engineering</strong>)<br />
Project Rationale<br />
The overall goal is to develop a framework with probe<br />
fabrication and assay synthesis protocols <strong>for</strong> multiplex DNA<br />
detection of food pathogens by surface-enhanced Raman<br />
scattering (SERS) utilizing non-fl uorescent, label-containing<br />
nanoparticles as DNA probes. Although research on SERSlabeled<br />
DNA examination is very active, it is still in its early<br />
stages with regard to multiplexing and detecting analytes at<br />
low levels. Our team is capitalizing on the unique spectroscopic<br />
signatures (down to ~1 nm resolution) of non-fl uorescing<br />
molecules as labels (Raman tags) to identify specific DNA<br />
sequences. Because of the distinct fi ngerprint of the labels due<br />
to SERS, simultaneous detection of multiple DNA hybridization<br />
without separation is feasible at sub femto molar (fM)<br />
sensitivity.<br />
There are a number of unique aspects to this project. We can<br />
use multiplex labeling in one system using a range of nonfl<br />
uorescing labels. A single plat<strong>for</strong>m <strong>for</strong> detection of food<br />
pathogens at sensitivities not af<strong>for</strong>ded by fl uorescence methods<br />
is possible using our approach. Incorporation of a magnetic<br />
separation step will enable the separation of target sequences<br />
in complex media. Use of non-fl uorecent labels [~$10-20/<br />
gm] <strong>for</strong> multiplexing is many orders cheaper than fl uorescent<br />
labels [~$10-20/mg]. Furthermore, the choice of SERS labels<br />
is enormous (~over 1000 labels) and extremely sensitive, and<br />
single-molecule identifi cation has been reported. This implies<br />
that eventually the detection can be accomplished without the<br />
amplifi cation step.<br />
Project Objectives<br />
• Optimize the SERS effect of dye/gold particle size<br />
and excitation wavelength and concentrations with<br />
multiplexing. We have demonstrated that up to<br />
eight non-fl uorescent Raman tags can be chosen<br />
with distinct signatures <strong>for</strong> visual multiplexing<br />
utilizing the SERS spectra. The fabrication step has<br />
also been optimized, and detection sensitivity of<br />
up to 1 fM is achievable <strong>for</strong> the chosen target.<br />
• Fabricate SERS-tagged DNA probes <strong>for</strong> each of the<br />
fi ve target pathogens and multiplex demonstrations.<br />
Multiplexing of up to eight probes has been demonstrated<br />
<strong>for</strong> a chosen DNA sequence. We have also demonstrated<br />
that hybridization of eight different DNA sequences<br />
(depicting eight probes) at one time can be detected.<br />
• Design and implement an analysis assay <strong>for</strong><br />
pathogen detection using SERS DNA probes.<br />
Project Highlights<br />
Our key accomplishment this year is the demonstration of an<br />
eight-plex, non-fl uorescent DNA detection assay using Raman<br />
spectroscopy. We are now undertaking steps to standardize<br />
the assay <strong>for</strong> direct detection of target sequences without the<br />
PCR amplifi cation step. The developed technique could be<br />
utilized as a slide (lab-on-slide) or tube (lab-on-tube) <strong>for</strong>mat <strong>for</strong><br />
pathogen and disease detection.<br />
10<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“Our key accomplishment this year is the demonstration of an eight-plex,<br />
non-fl uorescent DNA detection assay using Raman spectroscopy.”
Lu<br />
, Bh<br />
un<br />
ia and<br />
Che<br />
heng<br />
Rapid, quantitative, and reusable immunosensors <strong>for</strong><br />
bacteria detection on a microfluidic plat<strong>for</strong>m<br />
Investigators: Chang Lu (Department of Agricultural and Biological <strong>Engineering</strong>), Arun Bhunia (Department of<br />
<strong>Food</strong> Science), Zhongyang Cheng (Materials <strong>Engineering</strong>, Auburn University)<br />
Project Rationale<br />
The development of portable, rapid and sensitive biosensors<br />
<strong>for</strong> food safety applications enables point-of-care contamination<br />
detection and immediate interpretation of results. In this<br />
research project, our multi-disciplinary team is developing an<br />
integrated biosensor system on a microfl uidic chip <strong>for</strong> detecting<br />
bacteria using immunoassay-based reactions. The device will<br />
offer a sensitivity to detect 10 2 to 10 3 bacterial cells and an<br />
assay time of less than 20 minutes per test. Our system will<br />
yield quantitative data <strong>for</strong> estimating the number of the target<br />
bacterium in a food sample. The microfl uidic system under<br />
development consists of individual devices <strong>for</strong> cell lysis, lysate<br />
purifi cation, and immunoassays. We will use an intracellular<br />
antigen, alcohol acetaldehyde dehydrogenase (Aad), and its<br />
antibody MAb-H7 to detect Listeria monocytogenes. In order<br />
to concentrate L. monocytogenes cells from food samples,<br />
we will fabricate magnetic nanobars with different sizes and<br />
geometries and develop protocols <strong>for</strong> immobilizing antibodies<br />
specifi c to L. monocytogenes on the surface.<br />
A portable, reusable, and low-cost device will be useful <strong>for</strong><br />
bacterial testing in food manufacturing laboratories. Carrying<br />
out bacteria detection tests within the food manufacturing<br />
lab will decrease turnaround time <strong>for</strong> the results and avoid<br />
potential growth/decrease/contamination of bacteria during<br />
transit. Large, expensive equipment is often needed to per<strong>for</strong>m<br />
conventional analytical methods. Lab-on-a-chip approaches,<br />
however, allow sophisticated functions of analytical techniques<br />
to be miniaturized on a microchip. With this technology, it<br />
will be possible to per<strong>for</strong>m bacteria detection on a microchip<br />
using only basic laboratory equipment. This technology can<br />
signifi cantly benefi t the food industry by enhancing the food<br />
safety testing capability <strong>for</strong> food manufacturers, food testing<br />
laboratories, and public health and governmental agencies.<br />
Project Objectives<br />
• Fabricate magnetic nanobars with different sizes and<br />
geometries and develop protocols <strong>for</strong> immobilizing<br />
antibodies specifi c to L. monocytogenes on the surface.<br />
The amount of bacterial cells bound to the surface<br />
will be characterized under different conditions.<br />
• Develop electrophoresis-based immunoassay coupled<br />
with laser-induced fl uorescence on a microfl uidic<br />
chip. We will use this tool to quantitatively detect L.<br />
monocytogenes based on cell lysate, via the interaction<br />
between alcohol acetaldehyde dehydrogenase<br />
(Aad) and its monoclonal antibody (MAb-H7).<br />
• Demonstrate a prototype-integrated microfl uidic<br />
system that incorporates different steps such as<br />
manipulation of magnetic nanobars, cell lysis,<br />
lysate purifi cation, and immunoassay.<br />
Project Highlights<br />
We have created microfl uidic devices <strong>for</strong> concentration<br />
and lysis of bacterial cells in a continuous mode based on<br />
applying microspheres. Microspheres are accumulated in a<br />
microfl uidic channel, and the gaps between the microspheres<br />
retain bacterial cells. The electrical lysis can be carried out<br />
by applying an electrical pulse after cell concentration. This<br />
technology will allow incorporation of solid phase-based<br />
detection assays (e.g. ELISA) <strong>for</strong> bacterial identifi cation by<br />
functionalizing the microsphere surface. With concentration,<br />
lysis, and detection capabilities contained in one miniaturized<br />
device, we can produce a biosensor system that is both robust<br />
and low cost.<br />
“We have created microfl uidic devices <strong>for</strong> concentration and lysis of bacterial<br />
cells in a continuous mode based on applying microspheres.”<br />
11<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Ni<br />
vens<br />
ns, Fran<br />
klin<br />
and<br />
Corvala<br />
lan<br />
Continuous monitoring of chemical agents in aqueous<br />
media using bioreporter-based sensors<br />
Investigators: David Nivens (Department of <strong>Food</strong> Science), Michael Franklin (<strong>Center</strong> <strong>for</strong> Biofilm <strong>Engineering</strong>,<br />
Montana State University), Carlos Corvalan (Department of <strong>Food</strong> Science)<br />
Project Rationale<br />
The development of inexpensive sensors with analytical<br />
attributes to detect product tampering or adulterations from<br />
chemical contaminants would facilitate our nation’s ability<br />
to protect its food supply and minimize damage during a<br />
chemical contamination event (inherent or intentional). The<br />
bioreporter-based chemical sensors consist of genetically<br />
programmed cells (bioreporters), a porous microenvironment<br />
containing the bioreporters, an enclosure that houses the<br />
microenvironment, and a detection/communication system <strong>for</strong><br />
on-line detection capabilities. With the successful development<br />
of this technology, it is anticipated that the bioreporter-based<br />
chemical sensors will have the analytical attributes required to<br />
fi ll a critical need in the food industry. Besides being potentially<br />
inexpensive, these biosensors are being developed to: 1) detect<br />
a hazardous agent(s) typically below immediately dangerous<br />
to health or life (IDHL) limits; 2) minimize false positives and<br />
negatives; 3) have a typical response time of less than one<br />
hour; and 4) be used in fi eld environments by personnel with<br />
minimal to no training. We envision that the sensors will be<br />
used with standard food defense practices to further facilitate a<br />
safe food supply.<br />
• Combine the most successful strategies of<br />
objectives 1 and 2 to enhance selectivity (reducing<br />
false positives) <strong>for</strong> constructing novel bioreporters<br />
with optimal analytical per<strong>for</strong>mance <strong>for</strong> point-ofuse<br />
and long-term monitoring experiments.<br />
• Model the systems to improve all aspects of analytical<br />
per<strong>for</strong>mance and develop application-specifi c<br />
biosensors <strong>for</strong> food and agriculture systems.<br />
Project Highlights<br />
Our bioreporter-based chemical sensor technology used to<br />
detect a sodium arsenite spiked in water, milk, and orange<br />
juice samples demonstrates that our sensor technology can<br />
be used to detect food contaminants in a complex food matrix<br />
with minimal or no sample preparation. Arsenite levels of ten<br />
parts per billion in undiluted milk matrices were detected in<br />
two hours (response time is inversely proportional to analyte<br />
concentration). This technology could potentially be used by<br />
minimally trained personnel in numerous food and agriculture<br />
environments at or below immediately dangerous to health or<br />
life (IDHL) limits.<br />
Project Objectives<br />
• Develop a dual-signaling bioreporter that minimizes false<br />
negatives by using bioluminescence as an indicator<br />
<strong>for</strong> viability and physiological status and a second<br />
fl uorescence signal <strong>for</strong> hazardous chemical detection.<br />
• Develop a microenvironment that contains<br />
a programmable biofi lm and slow-release<br />
nutrients to increase the stability and<br />
extend the lifetime of the biosensor.<br />
12<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“The development of inexpensive sensors with analytical attributes to detect product<br />
tampering or adulterations from chemical contaminants would facilitate our nation’s ability<br />
to protect its food supply and minimize damage during a chemical contamination event.”
Scientific Publications and Presentations<br />
Peer Reviewed Journal Publications (2006-2007)<br />
• Bae, E., Banada, P.P., Huff, K., Bhunia, A.K., Robinson, J.P., Hirleman, E.D. Bio-physical modeling of <strong>for</strong>ward scattering from<br />
bacterial colonies using scalar diffraction theory. Applied Optics. v. 46 (17) p. 3639-3648 (2007).<br />
• Banada, P.P., Guo, S., Bayraktar, B., Bae, E., Rajwa, B., Robinson, J.P., Hirleman, E.D., Bhunia, A.K. Optical <strong>for</strong>ward scattering <strong>for</strong><br />
colony identifi cation and differentiation of Listeria species. Biosensors and Bioelectronics. v. 22 (8). p.1664–1671 (2007).<br />
• Banerjee, P., Morgan, M.T., Rickus, J.L., Ragheb, K., Corvalan, C., Robinson, J.P., Bhunia, A.K. Hybridoma Ped-2E9 cells cultured<br />
under modifi ed conditions can sensitively detect Listeria monocytogenes and Bacillus cereus. Applied Microbiology and<br />
Biotechnology. v. 73. p. 1423-1434 (2007).<br />
• Bayraktar, B., Banada, P.P., Hirleman, E.D., Bhunia, A.K., Robinson, J.P., Rajwa, B. Feature extraction from light-scatter patterns of<br />
Listeria colonies <strong>for</strong> identifi cation and classifi cation. Journal of Biomedical Optics. v. 11 (3) p. 034006 (2006).<br />
• Bhunia, A.K., Banada, P.P., Banerjee, P., Valadez, A., Hirleman, E.D. Light scattering, fi ber optic and cell-based sensors <strong>for</strong><br />
sensitive detection of foodborne pathogens. Journal of Rapid Methods and Automation in Microbiology. v. 15 (2) p.121–145<br />
(2007).<br />
• Geng, T., Uknalis, J., Tu, S.-I., Bhunia, A.K. Fiber optic biosensor employing Alexa-Fluor conjugated antibody <strong>for</strong> detection of<br />
Escherichia coli O157:H7 from ground beef in four hours. Sensors. v. 6. p. 796-807 (2006)<br />
• Geng, T., Hahm, B.K., Bhunia, A.K. Selective enrichment media affect the antibody-based detection of stress-exposed Listeria<br />
monocytogenes due to differential expression of antibody-reactive antigens identifi ed by protein sequencing. Journal of <strong>Food</strong><br />
Protection. v. 69. p. 1879-1886 (2006).<br />
• Kim, G., Morgan, M.T., Ess, D.R., Hahm, B.K., Kothapalli,A., Valadez, A., Bhunia, A.K. Detection of Listeria monocytogenes using an<br />
automated fi ber-optic biosensor: Raptor. Key <strong>Engineering</strong> Materials. v. 321-323. p. 1168-1171 (2006).<br />
• Kim, K.P., Hahm, B.K., Bhunia, A.K. The 2-cys peroxiredoxin defi cient Listeria monocytogenes displays impaired growth and<br />
survival in the presence of hydrogen peroxide in vitro but not in mouse organs. Current Microbiology. v. 54. p. 382-387<br />
(2007).<br />
• Leake, L.L. Advancing rapid microbial testing. <strong>Food</strong> Technology. v.60. p. 68-72 (2006)<br />
• Lathrop. A., Huff, K., Bhunia, A.K. Prevalence of antibodies reactive to pathogenic and nonpathogenic bacteria in preimmune<br />
serum of New Zealand white rabbits. Journal of Immunoassay and Immunochemistry. v. 27. p. 351-361 (2006).<br />
• Morgan, M.T., Kim, G., Ess, D.R., Kothapalli, A., Hahm, B.K., Bhunia, A.K. Binding inhibition assay using fi ber-optic based biosensor<br />
<strong>for</strong> the detection of foodborne pathogens. Key <strong>Engineering</strong> Materials. v. 321-323. p. 1145-1150 (2006).<br />
• Sage, L. Detecting pathogens on produce. Analytical Chemistry. pp 7-9. (2007)<br />
• Nanduri, V., Kim, G., Morgan, M.T., Ess, D. Hahm, B.-K., Kothapalli, A., Valadez, A.,Geng, T., Bhunia, A.K. Antibody immobilization<br />
on waveguides using a fl ow–through system show improved Listeria monocytogenes detection in an automated fi ber optic<br />
biosensor: RAPTOR. Sensors. v. 6. p. 808-822 (2006).<br />
• Nanduri, V., Bhunia, A.K., Tu, S.-I., Paoli, G.C., Brewster, J.D. SPR biosensor <strong>for</strong> the detection of L. monocytogenes using phage<br />
displayed antibody. Biosensors & Bioelectronics. 2007 (in press)<br />
• Sun, L., Yu, C., Irudayaraj, J. Surface enhanced raman scattering based nonfl uorescent probes <strong>for</strong> multiplex DNA detection.<br />
Analytical Chemistry, (accelerated publication, available online, Apr 27, 2007).<br />
• Wang, H.Y., Bhunia, A.K., Lu, C. A microfl uidic fl ow-through device <strong>for</strong> high throughput electrical lysis of bacterial cells based on<br />
continuous DC voltage. Biosensors & Bioelectronics. v. 22 p. 582-588 (2006).<br />
“Our collaboration with USDA-ARS Eastern Regional Research<br />
Laboratory continues to breed success and has led to 21 peer-reviewed<br />
research publications and 22 presentations and proceedings this year.”<br />
13<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Scientific Publications and Presentations<br />
Abstracts <strong>for</strong> major papers/posters presented (2006-2007)<br />
• Banada, P.P., Bernas, T., Robinson, J.P., Bhunia, A.K. Proteomic analysis and identifi cation of cytotoxic factors from Bacillus<br />
cereus. P-097, 107th American Society <strong>for</strong> Microbiology (ASM) <strong>Annual</strong> Meeting. May 21-25, Toronto, Canada pp 206., 2007.<br />
• Gross, B. D., Reed, T.S., Stoklosa, A.D., Schroeder, D.L., Nagel, A.C., Co, B., Nivens, D.E. Remote sensing of agricultural contaminants<br />
using biosensor networks over TCP/IP. 233rd <strong>Annual</strong> Meeting of the American Chemical Society. Presented April 23, 2007.<br />
• Hahm, B.K., Kim, H., Bhunia, A.K. Enrichment and detection of Escherichia coli O157:H7, Salmonella Typhimurium and Listeria<br />
monocytogenes using a sample preparation device, PEDD (Pathogen Enrichment and Detection Device). 107th American<br />
Society <strong>for</strong> Microbiology (ASM) <strong>Annual</strong> Meeting. May 21-25, Toronto, Canada. 2007.<br />
• Irudayaraj, J. No-glow tags <strong>for</strong> Raman Spectroscopy. Analytical Chemistry News. June 1, 2007 (page 3961).<br />
• Nagel, A.C., Mauer, L.J. , Stoklosa, A.D., Franklin, M.J., Nivens, D.E. Quantifi cation of cellular biomass and extracellular alginate<br />
from Pseudomonas aeruginosa biofi lms using fourier trans<strong>for</strong>m infrared (FT-IR) spectroscopy. American Society <strong>for</strong><br />
Microbiology, 107th <strong>Annual</strong> General Meeting. 2007.<br />
• Schroeder, D.L. , Nagel, A.C., Gross, B.D., Reed, T.S., Nivens, D.E. Bioreporter-based chemical sensor of arsenic in agricultural<br />
samples. 233rd <strong>Annual</strong> Meeting of the American Chemical Society. Presented April 23, 2007.<br />
• Valadez, A.M., Tu, S.-I. Tu, Bhunia, A.K. Development of a fi ber-optic waveguide biosensor assay <strong>for</strong> the detection of Salmonella<br />
Enteritidis from poultry products. Institute of <strong>Food</strong> Technologist. Poster Abstract No. 098-31, 2007.<br />
Thesis/Dissertations (2006-2007)<br />
• Bae, E. Analysis and characterization of multi-scale scattering : Application to bacterial colonies. Ph.D. Dissertation. Dec<br />
2006. <strong>Purdue</strong> University. 148 p.<br />
• Kim, H.A. Selective enrichment medium <strong>for</strong> simultaneous growth and detection of Escherichia coli O157:H7, Listeria<br />
monocytogenes, and Salmonella Enteritidis from food. 2007. <strong>Purdue</strong> University. p. 126<br />
• Valadez, A.M. Development of a fi ber-optic waveguide biosensor assay <strong>for</strong> the detection of Salmonella Enteritidis in food.<br />
M.S. Thesis 2006. <strong>Purdue</strong> University. 105 p.<br />
Books and Book Chapters (2006-2007)<br />
• Geng, T., Bhunia, A.K. 2007. Optical biosensors in foodborne pathogen detection. Smart Biosensor Technology. CRC Press,<br />
(Editors: Knopf and Bassi), Taylor and Francis group, Boca Raton, FL p. 505-519.<br />
• Kizil, R., Irudayaraj, J. 2007. FT-Raman spectroscopy <strong>for</strong> food and biomaterial characterization. Nondestructive sensing <strong>for</strong><br />
food quality. IFT Press, (Editors. Irudayaraj and Christoph), Blackwell Publishing Professional, Ames, IA 50014.<br />
14<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
“At the <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>, we direct our
Invited Lectures and Seminars (2006-2007)<br />
• Cheng, Z.-Y. Electroactive polymers <strong>for</strong> artifi cial muscles and biosensors. 3M Science and <strong>Engineering</strong> Faculty Day, St. Paul,<br />
Minnesota, USA, June 21, 2006.<br />
• Cheng, Z.-Y., Chin, B.A. A radically new approach to rapidly detect biological threat agent. SPIE Defense & Security, April,<br />
Orlando, Florida, USA, 2006.<br />
• Fu, L., Li, S., Zhang, K., Cheng, Z.-Y. A Novel Method <strong>for</strong> Monitoring Biological Quality of Surface Waters. 20th <strong>Annual</strong> Alabama<br />
Water Resource Conference, Orange Beach, Alabama USA, Sept. 7-8, 2006. — This poster was selected as the Best<br />
Student Poster (1st Place).<br />
• Li, S., Fu, L., Wang, C., Lea, S., Engelhard, M., Arey, B., Cheng, Z.-Y. Microstructure and composition of Fe-B Nanobars. Materials<br />
Research Society Fall Meeting, Boston, Massachusetts, USA, 2006.<br />
• Li, S.Q., Orona, L., Fu, L.L., Cheng, Z.-Y. Development of amorphous Fe-B nanorods and nanoarray as magnetostrictive acoustic<br />
resonator <strong>for</strong> sensor applications. US ONR Workshop on Transduction Materials and Devices, State College, Pennsylvania,<br />
May 10, 2006.<br />
Articles in Popular Press (2006-2007)<br />
• Advancing rapid microbial testing. <strong>Food</strong> Technology. 60 (9) p. 69-72. (2006)<br />
• Pinpointing bacteria. R&D Magazine. 48 (8) p. 68. (2006).<br />
• Detecting pathogens on produce. Analytical Chemistry. p. 7-9. (2007).<br />
Patents Granted (2006-2007)<br />
• 64803.P1.US - Multiplex Biosensor Using Gold Nanostructures. Provisional patent application fi led on February 23, 2007.<br />
ef<strong>for</strong>ts toward detecting problems and protecting consumers.”<br />
15<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
<strong>Center</strong> Staff<br />
Dr. Richard H. Linton<br />
Director<br />
765.494.6481<br />
linton@purdue.edu<br />
Staff<br />
Kevin T. Hamstra, Multimedia Technical Specialist<br />
• 765.496.3833 • khamstra@purdue.edu<br />
Kiya A. Smith, <strong>Center</strong> Coordinator<br />
• 765.496.3827 • kiya@purdue.edu<br />
Dr. W. R. (Randy) Woodson, Dean of Agriculture<br />
• 765.494.8391 • woodson@purdue.edu<br />
Dr. Shu-I Tu<br />
Supervisory Research Chemist<br />
215.233.6466<br />
shui.tu@ars.usda.gov<br />
USDA-ARS<br />
Dr. Jeffrey Brewster • 215.233.6447 • jeffrey.brewster@ars.usda.gov<br />
Dr. Pina Fratamico • 215.233.6525 • pina.fratamico@ars.usda.gov<br />
Dr. Andrew Gehring • 215.233.6491 • andrew.gehring@ars.usda.gov<br />
Dr. Peter Irwin • 215.233.6420 • peter.irwin@ars.usda.gov<br />
Dr. James A. Lindsay • 301.504.4674 • james.lindsay@ars.usda.gov<br />
Dr. John B. Luchansky • 215.233.6620 • john.luchansky@ars.usda.gov<br />
Dr. George Paoli • 215.233.6671 • george.paoli@ars.usda.gov<br />
Dr. Gary Richards • 302.857.6419 • gary.richards@ars.usda.gov<br />
Dr. Christopher Sommers • 215.836.3754 • chris.sommers@ars.usda.gov<br />
Dr. Howard Zhang • 215.233.6583 • howard.zhang@ars.usda.gov<br />
Dr. Arun K. Bhunia<br />
PI<br />
765.494.5443<br />
bhunia@purdue.edu<br />
Co-PIs<br />
Andrew Gehring • agehring@errc.ars.usda.gov<br />
E. Daniel Hirleman • 765.494.5688 • hirleman@purdue.edu<br />
Mark Morgan • 765.494.1180 • mmorgan@purdue.edu<br />
J. Paul Robinson • 765.494.6449 • jpr@fl owcyt.cyto.purdue.edu<br />
Shu-I-Tu • 215.233.6466 • stu@errc.ars.usda.gov<br />
Staff / Graduate Students<br />
Euiwon Bae • 765.494.4762 • ebae@purdue.edu<br />
Padmapriya Banda • 765.496.3826 • pbanada@purdue.edu<br />
B.K. Hahm • 765.496.7356 • hahm@purdue.edu<br />
Karleigh Huff • khuff@purdue.edu<br />
Hyochin Kim • 765.496.7354 • kim399@purdue.edu<br />
Viswaprakash Nanduri • vnanduri@purdue.edu<br />
Bartek Rajwa • 765.494.0757 • rajwa@fl owcyt.cyto.purdue.edu<br />
Angela Valadez • 765.496.3824<br />
Dr. Maribeth A. Cousin<br />
PI<br />
765.494.8287<br />
cousin@purdue.edu<br />
Co-PI<br />
Charles P. Woloshuk • 765.494.3450 • woloshuk@purdue.edu<br />
Staff / Graduate Students<br />
Yenny Suanthie • ysuanthi@purdue.edu<br />
Janaka Morandage • jmoranpa@purdue.edu<br />
16<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
Dr. Joseph Irudayaraj<br />
PI<br />
765.494.0388<br />
josephi@purdue.edu<br />
Staff / Graduate Student<br />
Lan Sun • sun22@purdue.edu<br />
Dr. Michael Ladisch<br />
PI<br />
765.494.7022<br />
ladisch@purdue.edu<br />
Co-PIs<br />
Padmapriya Banada • 765.496.3826 • pbanada@purdue.edu<br />
Rashid Bashir • basher@purdue.edu<br />
Arun Bhunia • 765.494.5443 • bhunia@purdue.edu<br />
Young-mi Kim • kim107@purdue.edu<br />
Xingya Liu • 765.494.7052 • xingya@purdue.edu<br />
Nathan Mosier • 765.494.7025 • mosiern@purdue.edu<br />
J. Paul Robinson • 765.494.6449 • jpr@fl owcyt.cyto.purdue.edu<br />
Andres Rodriguez • arodrigu@ecn.purdue.edu<br />
Miroslav Sedlak • 765.494.3699 • sedlak@purdue.edu<br />
Staff / Graduate Students<br />
Winnie Chen • chen52@purdue.edu<br />
Bala Jagadeesan • bjagadee@purdue.edu<br />
Yi-Shao Liu • liu63@purdue.edu<br />
Peter McKinnis • pmckinni@purdue.edu<br />
Heyjin Park • 765.434.7031 • heyjincpark@gmail.com<br />
Jaeho Shin • shin0@purdue.edu<br />
David Sung • ysung@purdu.edu<br />
Angela Valadez • 765.496.3824 • valadez@purdue.edu<br />
Shuaib Salamat • ssalmat@purdue.edu<br />
Dr. Chang Lu<br />
PI<br />
765.494.1188<br />
changlu@purdue.edu<br />
Co-PIs<br />
Ning Bao • nbao@purdue.edu<br />
Arun Bhunia • 765.494.5443 • bhunia@purdue.edu<br />
Zhongyang Cheng • chengzh@auburn.edu<br />
Staff / Graduate Students<br />
Hsiang-Yu Wang • hwang@purdue.edu<br />
Balamurugan Jagadessan • bala@purdue.edu<br />
Peixuan Wu • wupeixu@auburn.edu<br />
Suiqiong Li • lisuiqi@auburn.edu<br />
Dr. David E. Nivens<br />
PI<br />
765.494.0460<br />
dnivens@purdue.edu<br />
Co-PIs<br />
Carlos Corvalan • 765.494.8262 • corvalac@purdue.edu<br />
Michael Franklin • 406.994.5658 • umbfm@montana.edu<br />
Staff / Graduate Students<br />
Claudia Ionita • 765.496.7354 • cionita@purdue.edu<br />
Aaron Nagel • 765.496.3832 • acnagel@purdue.edu<br />
Xinyu Shen • 765.496.3825 • shenx@purdue.edu<br />
17<br />
<strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>
It is the policy of the <strong>Purdue</strong> University <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong>, that all persons shall have equal<br />
opportunity and access to the programs and facilities without regard to race, color, sex, religion, national origin,<br />
age, marital status, parental status, sexual orientation or disability.<br />
<strong>Purdue</strong> University is an Affirmative Action employer.<br />
The <strong>Center</strong> <strong>for</strong> <strong>Food</strong> <strong>Safety</strong> <strong>Engineering</strong><br />
<strong>Purdue</strong> University<br />
<strong>Food</strong> Science Building<br />
745 Agriculture Mall Drive<br />
West Lafayette, IN 47909<br />
Non-profit<br />
Organization<br />
U. Postage<br />
PAID<br />
<strong>Purdue</strong><br />
University