QC and normalisation of microarray experiments - BiGCaT
QC and normalisation of microarray experiments - BiGCaT
QC and normalisation of microarray experiments - BiGCaT
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Contents<br />
• Background on quality control (<strong>QC</strong>)<br />
– Examples based on two channel data sets<br />
• Background on further data preprocessing<br />
• Application <strong>of</strong> a Genepattern <strong>QC</strong> module for Affymetrix data<br />
– settings<br />
– illustration on data sets<br />
– interpretation <strong>of</strong> outcome<br />
• Preprocessing Affymetrix data using a Genepattern module<br />
– settings<br />
• Introduction to the afternoon session <strong>and</strong> the data set to be used<br />
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