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QC and normalisation of microarray experiments - BiGCaT

QC and normalisation of microarray experiments - BiGCaT

QC and normalisation of microarray experiments - BiGCaT

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Examples<br />

• To illustrate some <strong>QC</strong> aspects to consider, I will show<br />

examples from output <strong>of</strong> our in-house developed<br />

workflow Array<strong>QC</strong> (taken from different data sets)<br />

– This workflow has been developed to h<strong>and</strong>le one <strong>and</strong> two<br />

channel array <strong>experiments</strong>, with predefined settings for<br />

Agilent/Genepix data<br />

– Later I will show <strong>QC</strong> results for Affymetrix chips in more<br />

detail<br />

6

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