ACPFG Annual Report

Publications
5. Able JA, Langridge P and Milligan AS. 2007. Capturing diversity
in the cereals: many options but little promiscuity. Trends in
Plant Science, 12(2): 71-79
6. Appleby N, Edwards D and Batley J. 2008. New technologies
for ultra-high throughput genotyping in plants. Ed. Somers D,
Langridge P, and Gustafson JP. Methods in Molecular Biology,
Humana Press (USA) In Press
7. Ayliffe MA, Pallotta M, Langridge P and Pryor AJ. 2007. A
Barley Activation Tagging System. Plant Mol. Biol. 64:329-47
8. Batley J and Edwards D. 2008. Mining for Single Nucleotide
Polymorphism (SNP) and Simple Sequence Repeat (SSR)
molecular genetic markers. Bioinformatics for DNA Sequence
Analysis. Ed. David Posada Methods in Molecular Biology,
Humana Press (USA) In press
9. Batley J and Edwards D. 2008. Bioinformatics: Fundamentals
and Applications in Plant Genetics and Breeding. Principles and
Practices of Plant Molecular Mapping and Breeding. Eds. Kole C
and Abbott AG. Science Publishers, Inc., (USA) In Press
10. Batley J, Hopkins CJ, Cogan NOI, Hand M, Jewell E, Kaur J,
Kaur S, Li X, Ling AE, Love C, Mountford H, Todorovic M, Vardy
M, Walkiewicz M, Spangenberg GC and Edwards D. 2007.
Identification and characterisation of Simple Sequence Repeat
(SSR) markers from Brassica napus expressed sequences.
Molecular Ecology Notes 7: 886-889
11. Batley J, Jewell E and Edwards D. 2007. Automated discovery
of Single Nucleotide Polymorphism (SNP) and Simple Sequence
Repeat (SSR) molecular genetic markers. Plant Bioinformatics.
Ed. Edwards D. Methods in Molecular Biology, Humana Press
(USA), pp. 473-494
12. Boden SA, Shadiac N, Tucker E, Langridge P and Able JA. 2007.
Expression and functional analysis of TaASY1 during meiosis of
bread wheat (Triticum aestivum). BMC Molecular Biology 8:65
13. Brownfield L, Ford K, Doblin M, Newbigin E, Read S and Bacic
A. 2007. Proteomic and biochemical evidence links the callose
synthase in Nicotiana alata pollen tubes to the product of the
NaGSL1 gene. Plant Journal 52, 147-156
14. Byrt CS, Platten JD, Spielmeyer W, James RA, Lagudah ES,
Dennis ES, Tester M and Munns R. 2007. HKT1;5-like cation
transporters linked to Na+ exclusion loci in wheat, Nax2 and
Kna1. Plant Physiology, 143, 1918-1928
15. Callahan DL, Roessner U, Dumontet V, Perrier N, Wedd AG,
O’Hair RAJ, Baker AJM and Kolev SD. 2008. LC-MS and
GC-MS metabolite profiling of nickel(II) complexes in the
latex of nickel-hyperaccumulating tree Sebertia acuminata and
identification of methylated aldaric acid as a new nickel(II)
ligand. Phytochemistry. In press
16. Chen Z, Pottosin II, Cuin TA, Funglsang AT, Tester M, Jha
D, Zepeda-Jazo I, Zhon M, Palmgren MG, Newman IA
and Shabala S. 2007. Root plasma membrane transporters
controlling K+/Na+ homeostasis in salt stressed barley. Plant
Physiology, 145 (4):1714-1725
17. Collins NC, Rients EN and Schulze-Lefert P. 2007. Resistance
to cereal rusts at the plant cell wall – what can we learn from
other host-pathogen systems? Australian Journal of Agricultural
Research, 58, 476 - 489
18. Collins NC, Shirley NJ, Saeed M, Pallotta M, Langridge P
and Gustafson JP. 2008. An ALMT1 Gene Cluster Controlling
Aluminium (Aluminum) Tolerance at the Alt4 Locus of Rye
(Secale cereale L.). Genetics. In press
19. Davenport RJ, Munoz-Mayor A, Jha D, Essah PA, Rus A and
Tester M. 2007. The Na+ transporter AtHKT1 controls xylem
retrieval of Na+ in Arabidopsis. Plant, Cell and Environment 30,
497-507
20. Drew DP, Lunde C, Lahnstein J and Fincher GB. 2007.
Heterologous expression of cDNAs encoding
monodehydroascorbate reductases from the moss,
Physcomitrella patens and charaterizations of the expressed
enzymes. Planta 225, 945-954
21. Duran C, Edwards D and Batley J. 2008. Genetic maps and
the use of synteny. Plant Genomics. Ed. Somers D, Langridge P,
and Gustafson JP. Methods in Molecular Biology, Humana Press
(USA) In Press
22. Edwards D. 2008. Bioinformatics. The World Wheat Book. Eds.
Bonjean A, Angus W and Van Ginkel M. Lavoisier (France) In
Press
23. Edwards D. 2008. Bioinformatics and plant genomics for staple
crops improvement. Breeding Major Food Staples for the 21st
Century. Eds. Kang MS and Priyadarshan PM. Blackwell. In Press
24. Farrokhi N, Hrmova M, Burton RA and Fincher GB. 2008.
Heterologous and Cell Free Protein Expression Systems. In:
Methods in Molecular Biology: Plant Genomics, Humana Press
Inc., Totowa, NJ, USA (Somers D, Langridge P, Gustafson P, eds).
Invited review. In Press
25. Genc Y, Huang CY and Langridge P. 2007. A study of the role
of root morphological traits in growth of barley in zinc-deficient
soil. Journal of Experimental Botany 58: 2775-2784
26. Genc Y, Langridge P and Huang C-Y. 2007. A study of the role
of root morphological traits on growth of barley in zinc-deficient
soil. Journal of Experimental Botany, doi:10.1093/jxb/erm142
27. Genc Y, McDonald GK and Tester M. 2007. Reassessment of
tissue Na+ concentration as a criterion for salinity tolerance in
bread wheat. Plant, Cell and Environment 30: 1486-1498
28. Glassop D, Roessner U, Bacic A and Bonnett G. 2007. Changes
in the sugarcane metabolome with stem development. Are
they related to sucrose accumulation? Plant Cell Physiol. 48,
573-584
29. Hrmova M and Fincher GB. 2007. Dissecting the catalytic
mechanism of a plant ß-D-glucan glucohydrolase through
structural biology using inhibitors and substrate analogues.
Invited review. Carbohydrate Research 342, 1613-1623
30. Hrmova M and Fincher GB. 2008. Functional genomics and
structural biology in the definition of gene function. In: Methods
in Molecular Biology: Plant Genomics, Humana Press Inc.,
Totowa, NJ, USA (Somers D, Langridge P, Gustafson P, eds).
Invited review. In Press
31. Hrmova M, Farkas V, Lahnstein J and Fincher GB. 2007. A
barley xyloglucan xyloglucosyl transferase covalently links
xyloglucan, cellulosic substrates and (1,3;1,4)-ß-D-glucans.
Journal of Biological Chemistry 282, 12951-12962
32. Imelfort M, Batley J, Grimmond S and Edwards D. 2008.
Genome sequencing approaches and successes. In: Plant
Genomics. Ed. Somers D, Langridge P, and Gustafson JP.
Methods in Molecular Biology, Humana Press (USA) In Press
33. Jacobs A, Lunde C, Bacic A, Tester M and Roessner U. 2007.
The impact of constitutive heterologous expression of a moss
Na+ transporter on the metabolomes of rice and barley.
Metabolomics3(3): 307-317
42 2007 ACPFG ANNUAL REPORT