03.01.2015 Views

AIDS Kit I: Simulation of HIV-1 Detection - Frederiksen

AIDS Kit I: Simulation of HIV-1 Detection - Frederiksen

AIDS Kit I: Simulation of HIV-1 Detection - Frederiksen

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

EDVOTEK • P.O. Box 1232 • West Bethesda, MD 20827-1232<br />

®<br />

The Biotechnology<br />

Education Company ®<br />

<strong>AIDS</strong> <strong>Kit</strong> I:<br />

<strong>Simulation</strong> <strong>of</strong><br />

<strong>HIV</strong>-1 <strong>Detection</strong><br />

271<br />

EDVO-<strong>Kit</strong> #<br />

Storage:<br />

Store entire experiment in the refrigerator.<br />

Experiment Objective:<br />

The objective <strong>of</strong> this experiment is to understand the molecular biology<br />

<strong>of</strong> the human immunodeficiency virus and the pathogenesis <strong>of</strong> acquired<br />

immune deficiency syndrome. The experimental concepts and methodology<br />

involved with enzyme linked immunosorbent (ELISA) assays will<br />

be introduced in the context <strong>of</strong> the clinical screening <strong>of</strong> serum samples<br />

for antibodies to the <strong>HIV</strong> virus.<br />

1-800-EDVOTEK • (301) 251-5990 • 24-hour FAX: (301) 340-0582<br />

http://www.edvotek.com • email: edvotek@aol.com<br />

All components are intended for educational research only. They are not to be used for<br />

diagnostic or drug purposes, nor administered to or consumed by humans or animals.<br />

EVT 909168AM


2<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

Major Section Headings<br />

Page<br />

Experiment Components 3<br />

Requirements 3<br />

Background Information 4<br />

Experimental Procedures 9<br />

Study Questions 12<br />

Instructor's Guide<br />

General Information 13<br />

Pre-Lab Preparations 13<br />

Avoiding Common Pitfalls 16<br />

Idealized Schematic <strong>of</strong> Results 16<br />

Answers to Study Questions 17<br />

This experiment does not contain <strong>HIV</strong> virus or its components.<br />

None <strong>of</strong> the components have been prepared from human sources.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

3<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

Experiment Components<br />

Storage:<br />

Store entire experiment<br />

in the refrigerator.<br />

All components <strong>of</strong> this experiment<br />

are intended for educational<br />

research only. They are not to be<br />

used for diagnostic or drug<br />

purposes, nor administered to or<br />

consumed by humans or animals.<br />

This kit is designed for 10 lab groups<br />

A<br />

B<br />

C<br />

D<br />

E<br />

F<br />

G<br />

H<br />

Contents<br />

<strong>HIV</strong> Antigens (simulated)<br />

Positive Control (primary antibody)<br />

Donor 1 Serum (simulated)<br />

Donor 2 Serum (simulated)<br />

Anti-IgG-peroxidase conjugate (secondary antibody)<br />

Hydrogen peroxide, stabilized<br />

Aminosalicylic acid (peroxide co-substrate)<br />

Phosphate buffered saline concentrate<br />

2 Microtiter plates<br />

50 Transfer pipets<br />

60 Microtest tubes with attached caps<br />

25 1 ml pipets<br />

2 plastic tubes, 50 ml<br />

This experiment does not contain <strong>HIV</strong> virus or its components.<br />

None <strong>of</strong> the components have been prepared from human sources.<br />

Requirements<br />

• Distilled or deionized water<br />

• Beakers<br />

• 37°C Incubation oven<br />

• Disposable lab gloves<br />

• Safety goggles<br />

• Automatic micropipets and tips recommended<br />

Make sure glassware is clean, dry and free <strong>of</strong> soap residue.<br />

For convenience, additional disposable transfer pipets (Cat. # 632) can<br />

be purchased for liquid removal and washing steps.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


4<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

BACKGROUND INFORMATION<br />

Background Information<br />

Acquired immune deficiency syndrome (<strong>AIDS</strong>) is a disease characterized<br />

by the progressive deterioration <strong>of</strong> an individual's immune system. The<br />

immunological impairment allows infectious agents such as viruses, bacteria,<br />

fungi and parasites to invade the body and propagate unchecked. In<br />

addition, the incidence <strong>of</strong> certain cancers dramatically increases in these<br />

patients because <strong>of</strong> their compromised immune system. <strong>AIDS</strong> is a serious<br />

threat to human health and is a global problem. Intensive research is being<br />

done to advance methods <strong>of</strong> detection, clinical treatment and prevention.<br />

Retroviruses<br />

The <strong>AIDS</strong> etiologic agent (<strong>HIV</strong>-1) is the human immunodeficiency virus<br />

type 1, which is a retrovirus. Retroviruses contain an RNA genome and<br />

the RNA dependent DNA polymerase also termed reverse transcriptase.<br />

Members <strong>of</strong> the retrovirus family are involved in the pathogenesis <strong>of</strong> certain<br />

types <strong>of</strong> leukemias and other sarcomas in humans and animals. The<br />

structure and replication mechanism <strong>of</strong> <strong>HIV</strong> is very similar to other<br />

retroviruses. <strong>HIV</strong> is unique in some <strong>of</strong> its properties since it specifically<br />

targets the immune system, is very immunoevasive, forms significant<br />

amounts <strong>of</strong> progeny virus in vivo during the later stages <strong>of</strong> the disease and<br />

can be transmitted during sexual activity.<br />

Glycoprotein<br />

Reverse<br />

transcriptase<br />

Protease<br />

The <strong>HIV</strong> viral particle is surrounded by a lipid bilayer derived from the<br />

host cell membrane during budding. The viral proteins are identified by<br />

the prefix gp (glycoprotein) or p (protein) followed<br />

Protein<br />

coat<br />

RNA<br />

by a number indicating the approximate molecular<br />

weight in kilodaltons. The lipid bilayer contains gp<br />

160, gp 120 and gp 41. The gp 41 anchors gp 120 in<br />

the bilayer. Beneath the bilayer is a capsid consisting<br />

<strong>of</strong> p17 and p18. Within this shell is the viral core.<br />

The walls <strong>of</strong> the core consists <strong>of</strong> p24 and p25. Within<br />

the core are two identical RNA molecules 9000 nucleotides<br />

in length. Hydrogen bonded to each genomic<br />

RNA is a cellular tRNA molecule. The core also contains<br />

approximately 50 molecules <strong>of</strong> reverse transcriptase.<br />

Lipid<br />

bilayer<br />

Core<br />

Integrase<br />

Large quantities <strong>of</strong> virus can be grown in tissue culture<br />

for diagnostic and research purposes. Several<br />

<strong>of</strong> the viral proteins have been cloned and expressed<br />

in relatively large quantities.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

5<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

BACKGROUND INFORMATION<br />

Background Information,<br />

continued<br />

Mechanism <strong>of</strong> <strong>HIV</strong> Infection<br />

An individual can be infected with <strong>HIV</strong> through an abrasion in a mucosal<br />

surface (e.g. vaginal and rectal walls), a blood transfusion or by<br />

intravenous injection with a contaminated needle. Virus or virally infected<br />

cells are found in bodily fluids such as semen and blood. During<br />

the early stages <strong>of</strong> infection in an immunocompetent person the<br />

<strong>HIV</strong> virus elicits humoral and cellular immunity responses that result<br />

in a variety <strong>of</strong> circulating IgG molecules directed at several viral<br />

epitopes. However, since the virus has a high mutation rate the variants<br />

survive and produce progeny having a similar capacity to escape<br />

immunosurveillance.<br />

Unlike other cellular DNA polymerases, <strong>HIV</strong> DNA polymerase (reverse<br />

transcriptase) has a high error rate (1 in 10 4 ). These frequent<br />

mutations continually change the viral protein epitopes. This is believed<br />

to be the main mechanism <strong>of</strong> <strong>HIV</strong> immunoevasion. The most<br />

important target for the virus are hematopoietic cells such as bone<br />

marrow derived monocytes, myelocytes and immune system lymphocytes.<br />

Infection <strong>of</strong> immune system effector cells such as T cells and<br />

macrophages ultimately produce the most pr<strong>of</strong>ound clinical consequences.<br />

gp 120 binds to the CD4 receptors on the surface <strong>of</strong> T helper<br />

(T H<br />

) cells. These receptors are membrane bound glycoproteins involved<br />

in T cell maturation from precursor cells. T H<br />

cells are required for the<br />

body's overall immunological responses. The viral lipid bilayer fuses<br />

with that <strong>of</strong> the cell's membranes and the viral protein capsid becomes<br />

internalized via receptor mediated endocytosis. Subsequently, the rest<br />

<strong>of</strong> the CD4 receptors are internalized and gp 120 appears on the T cell<br />

surface.<br />

<strong>HIV</strong> Replication and Transcription<br />

Through a complex mechanism involving several events, the reverse<br />

transcriptase synthesizes a double stranded DNA copy <strong>of</strong> the genomic<br />

RNA template. The tRNA molecule acts as the primer for the first<br />

strand synthesis. The reverse transcriptase, RNAse H activity, degrades<br />

the RNA strand <strong>of</strong> the RNA-DNA duplex and the polymerase activity<br />

synthesizes a complementary DNA strand. The DNA reverse transcripts<br />

(copy DNA) migrate into the cell nucleus where they become<br />

covalently integrated into the cellular genomic DNA. The integration<br />

is catalyzed by the <strong>HIV</strong> integrase. The copy DNA integrates via specific,<br />

self-complimentary sequences at both ends called long terminal<br />

repeats (LTRs). These sequences also have important functions in viral<br />

transcription. The integrated copy DNA is called proviral DNA or<br />

the provirus. The provirus enters a period <strong>of</strong> latency that can last for<br />

several years. The proviral DNA is replicated along with the cellular<br />

DNA and can be inherited through many generations. The <strong>HIV</strong> proviral<br />

DNA contains the major genes common to all non-transducing<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


6<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

BACKGROUND INFORMATION<br />

Background Information,<br />

continued<br />

retroviruses. These genes are gag, pol and env. <strong>HIV</strong> also contains five<br />

or six other genes that are much smaller. Retroviral transcription is a<br />

complex process producing a variety <strong>of</strong> RNAs. Promotion <strong>of</strong> transcripts<br />

is controlled in the LTR and transcriptional termination signals are located<br />

in each major gene. Those RNA transcripts that remain unspliced<br />

become packaged in the new viral particles. The gag gene is translated<br />

into a polypeptide that is cleaved by a viral protease into four<br />

proteins that form the inner shells. Specific protease inhibitors are clinically<br />

being used to inhibit protein processing and control the further<br />

spread <strong>of</strong> the <strong>HIV</strong> virus in patients suffering from <strong>AIDS</strong>. The pol gene<br />

encodes the reverse transcriptase and the integrase which is responsible<br />

for the genomic incorporation <strong>of</strong> copy DNA. The env gene encodes<br />

the surface glycoproteins the viral particles acquire as they bud<br />

from the cells.<br />

Immunological Response:<br />

Macrophages are circulating monocytes and are involved in the nonspecific<br />

engulfment <strong>of</strong> foreign material and normal cellular debris.<br />

These materials are degraded in the lysosomes <strong>of</strong> the cells. Peptides<br />

from foreign degraded proteins are transported to the macrophage<br />

surface where they remain bound by specialized receptors. Immunologically<br />

inactive T H<br />

cells interact with these surface bound antigenreceptor<br />

complexes which enables them to become fully activated. <strong>HIV</strong><br />

infects macrophages by binding to the cells' CD4 receptors. Fully activated<br />

T H<br />

cells secrete several types <strong>of</strong> protein factors collectively known<br />

as lymphokines. Several <strong>of</strong> these factors are the interleukins which<br />

stimulate antibody secretions from B cells enable macrophage activation,<br />

stimulate general T cell growth and activate cytotoxic T cells.<br />

Cytotoxic T cells are involved in the actual destruction <strong>of</strong> foreign cells<br />

and body cells infected with different viruses. Inactive T H<br />

cells that<br />

have been infected by <strong>HIV</strong> remain in a relatively quiescent state similar<br />

to uninfected cells. When a T H<br />

cell containing provirus undergoes<br />

antigenic activation the integrated copy DNA becomes open to the transcription<br />

<strong>of</strong> viral RNA.<br />

Viral replication causes the destruction <strong>of</strong> the T H<br />

cells. Infected T H<br />

cells<br />

also form syncytia, i.e. fused cells. Syncytia occur since the gp 120 on<br />

the infected T cell surface binds to CD4 receptors on other T H<br />

cells.<br />

Cell to cell transmission <strong>of</strong> virus can occur in syncytia without the need<br />

for a free viral intermediate. Replication <strong>of</strong> virus also proceeds in activated<br />

macrophages which causes cell death and release <strong>of</strong> infectious<br />

viral particles. These and other events ultimately cause complete immune<br />

system collapse. The long latency period after <strong>HIV</strong> infection can<br />

be understood in terms <strong>of</strong> T H<br />

cell activation. Only certain T H<br />

cells are<br />

capable <strong>of</strong> responding to a particular antigen. <strong>HIV</strong> infected but<br />

asymptomatic individuals will experience the usual exposure to chemicals,<br />

viruses and bacteria. Each infection activates a subpopulation T H<br />

cells containing the provirus which eventually leads to the death <strong>of</strong><br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

7<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

BACKGROUND INFORMATION<br />

Background Information,<br />

continued<br />

these cells. After successive waves <strong>of</strong> infections the population <strong>of</strong> T H<br />

and macrophage cells become depleted and clinical <strong>AIDS</strong> develops.<br />

There are a very small number <strong>of</strong> individuals who have coexisted with<br />

<strong>HIV</strong> for over 15 years. Although the reasons for this coexistence with<br />

<strong>HIV</strong> is not understood, the immune system appears to remain intact.<br />

Such individuals tend to eat well, exercise and practice stress reduction<br />

techniques. Genetic analysis may determine whether or not subtle<br />

genetic differences in the immune system are significant factors.<br />

Description <strong>of</strong> the <strong>HIV</strong> Screening <strong>Simulation</strong><br />

well<br />

Human<br />

Serum<br />

(IgG)<br />

<strong>HIV</strong><br />

Antigen<br />

well<br />

Schematic for<br />

ELISA<br />

Horseradish<br />

peroxidase<br />

Anti-IgG<br />

(Rabbit)<br />

Human<br />

Serum<br />

(IgG)<br />

<strong>HIV</strong><br />

Antigen<br />

Enzyme linked immunosorbent assay (ELISA) tests were originally<br />

developed for antibody measurement. These immunoassays have also<br />

been adapted to successfully detect samples that contain antigens. This<br />

ELISA simulation experiment has been designed to detect a hypothetical<br />

patient's circulating IgG directed towards the viral (<strong>HIV</strong>) antigen.<br />

ELISAs are done in microtiter plates which are generally made <strong>of</strong> polystyrene<br />

or polyvinyl chloride. The plates are somewhat transparent<br />

and contain many small wells, in which liquid samples are deposited.<br />

First, the antigens are added to the wells<br />

where some remain adsorbed by hydrophobic<br />

association to the walls after washing<br />

away the excess. The antigens can be<br />

the whole <strong>HIV</strong> lysate, specific <strong>HIV</strong> proteins,<br />

or a mixture <strong>of</strong> the two. There is no<br />

specificity involved with the adsorption<br />

process although some substances may exhibit<br />

low binding to the walls. In certain<br />

cases the antigens can be covalently crosslinked<br />

to the plastic using UV light. After<br />

S<br />

(colorless)<br />

well<br />

Horseradish<br />

peroxidase<br />

Anti-IgG<br />

(Rabbit)<br />

Human<br />

Serum<br />

(IgG)<br />

<strong>HIV</strong><br />

Antigen<br />

P<br />

(color)<br />

washing away unadsorbed material, the<br />

unoccupied sites on the walls <strong>of</strong> the plastic<br />

wells are blocked with proteins, typically<br />

gelatin or bovine serum albumin.<br />

Infection by <strong>HIV</strong>-1 causes the individual<br />

to mount an antibody response which<br />

eventually results in plasma IgG molecules<br />

that bind to different <strong>HIV</strong> proteins (and/<br />

or different areas or the same polypeptide).<br />

In this experiment, if these antibodies are<br />

present in the plasma sample they will<br />

bind to the adsorbed antigens in the well<br />

and remain there after washing.<br />

A solution containing the IgG antibody<br />

that binds to any kind <strong>of</strong> human IgG, is<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


8<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

BACKGROUND INFORMATION<br />

Background Information,<br />

continued<br />

then added to the wells. If the primary antibody has remained in a<br />

well, then the secondary antibody will bind to it and also remain attached<br />

after washing. These secondary antibodies are usually raised<br />

in rabbits and goats immunized with human IgG fractions. The second<br />

IgG antibodies are purified and covalently cross linked to horseradish<br />

peroxidase. This modification does not significantly affect the<br />

binding specificity and affinity <strong>of</strong> the antibody or the enzymatic activity<br />

<strong>of</strong> the peroxidase.<br />

After washing, a solution containing hydrogen peroxide and<br />

aminosalicylate is added to each well. Peroxidase possesses a high<br />

catalytic activity and can exceed turnover rates <strong>of</strong> 10 6 per second. Consequently,<br />

amplification <strong>of</strong> a positive sample can occur over several<br />

orders <strong>of</strong> magnitude. Many hydrogen donor co-substrates can be used<br />

by peroxidase. These co-substrates include o-diansidine,<br />

aminoantipyrine, aminosalicylic acid and numerous phenolic compounds<br />

that develop color upon oxidation. The substrate solution<br />

added is nearly colorless. Peroxidase converts the peroxide to H 2<br />

O +<br />

O 2<br />

using the salicylate as the hydrogen donor. The oxidized salicylate<br />

is brown and can be easily observed in wells containing anti-<strong>HIV</strong>-1<br />

IgG (positive plasma).<br />

It should be noted that polyclonal antibody preparations to a given<br />

antigen can have variable binding affinities due to differences in the<br />

immunological responses between animals. Different immunizations<br />

with the same antigen in the same animal can also produce variable<br />

binding affinities. The use <strong>of</strong> monoclonal antibodies directed against a<br />

single epitope eliminates this variability. Western blot analysis <strong>of</strong> positive<br />

samples are used to confirm infection by <strong>HIV</strong>.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

9<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

EXPERIMENTAL PROCEDURES<br />

EXPERIMENT OBJECTIVE:<br />

The objective <strong>of</strong> this experiment is to understand the molecular biology<br />

<strong>of</strong> the human immunodeficiency virus and the pathogenesis <strong>of</strong><br />

acquired immune deficiency syndrome. The experimental concepts<br />

and methodology involved with enzyme linked immunosorbent<br />

(ELISA) assays will be introduced in the context <strong>of</strong> the clinical screening<br />

<strong>of</strong> serum samples for antibodies to the virus.<br />

LABORATORY SAFETY<br />

Gloves and goggles should be worn routinely as good laboratory practice.<br />

Student Experimental Procedures<br />

GENERAL INSTRUCTIONS AND PROCEDURES<br />

Row 1<br />

Row 2<br />

Row 3<br />

Row 4<br />

Remember!<br />

Equilibrate a 37°C<br />

incubation oven before<br />

starting the experiment.<br />

Labeling the Microtiter Plate:<br />

• Place the microtiter plate vertically as shown in Figure 2.<br />

• Mark the plate with your initials or lab group number and<br />

number the rows 1-4 down the side.<br />

Labeling the Plastic Transfer pipets:<br />

Label 5 transfer pipets as follows:<br />

• ( - ) (negative)<br />

• (+ ) (positive)<br />

• DS 1 (Donor Serum 1)<br />

• DS 2 (Donor Serum 2)<br />

• PBS (Phosphate Buffered Saline)<br />

Use the appropriately labeled plastic transfer pipet for liquid removals<br />

and washes as outlined in the experimental procedures starting on<br />

page 10.<br />

Figure 2<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


10<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

EXPERIMENTAL PROCEDURES<br />

Student Experimental<br />

Procedures, continued<br />

INSTRUCTIONS FOR ADDING LIQUIDS AND<br />

WASHING WELLS<br />

Adding Reagents to wells:<br />

• For adding reagents to the wells, use the same 1 ml pipet.<br />

Useful Hint!<br />

The general<br />

procedure for adding<br />

reagents to the wells<br />

will conserve the use <strong>of</strong><br />

a large number <strong>of</strong> pipets in this<br />

simulated classroom ELISA.<br />

If available, reagents should be<br />

dispensed with an automatic<br />

micropipet using disposable tips.<br />

• RINSE THE PIPET THOROUGHLY with distilled water before<br />

using the pipet for adding the next reagent.<br />

Liquid Removal and Washes:<br />

• When instructed in the experimental procedures, remove liquids<br />

with the appropriately labeled transfer pipet, and then<br />

wash the wells as follows:<br />

A. Use the transfer pipet labeled "PBS", to add PBS buffer to<br />

the wells in all rows. Add PBS buffer until each well is<br />

almost full.<br />

The capacity <strong>of</strong> each well is approximately 0.2 ml. Do not allow<br />

the liquids to spill over into adjacent wells.<br />

B. With the appropriately labeled transfer pipet, remove all<br />

the liquid (PBS buffer) from the wells in each row. Dispose<br />

the liquid in the beaker labeled "waste".<br />

EXPERIMENTAL STEPS FOR THE ENZYME LINKED<br />

IMMUNOSORBENT ASSAY (ELISA)<br />

1. To all 12 wells, add 0.1 ml <strong>of</strong> “<strong>HIV</strong>” (viral antigens).<br />

WEAR SAFETY GOGGLES<br />

AND GLOVES<br />

2. Incubate for 5 minutes at room temperature.<br />

3. Remove all the liquid (viral antigens) with a transfer pipet.<br />

4. Wash each well once with PBS buffer as described above ("Liquid<br />

Removal and Washes").<br />

In research labs, following this step, all sites on the microtiter plate are<br />

saturated with a blocking solution consisting <strong>of</strong> a protein mixture, such<br />

as BSA. We have designed this experiment to eliminate this step to save<br />

time.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

11<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

EXPERIMENTAL PROCEDURES<br />

Student Experimental<br />

Procedures, continued<br />

Reminders:<br />

ADDING REAGENTS:<br />

Be sure to rinse the 1 ml pipet<br />

thoroughly before adding a new<br />

reagent. (Steps 1, 5, 9, & 13).<br />

Alternatively, if you are using<br />

automatic micropipets, use a fresh tip<br />

for each reagent.<br />

LIQUID REMOVALS:<br />

Use the appropriately labeled transfer<br />

pipet to remove all liquid from the wells<br />

in each row (steps 3, 7, & 11) and<br />

after washes (steps 4, 8 & 12)<br />

Transfer pipet (-) Row 1<br />

Transfer pipet (+) Row 2<br />

Transfer pipet DS 1 Row 3<br />

Transfer pipet DS 2 Row 4<br />

Dispose the liquid in the beaker<br />

labeled "waste".<br />

WASHES:<br />

For all rows, use the transfer pipet<br />

labeled "PBS" to add PBS until each<br />

well is almost full. (Steps 4, 8, & 12)<br />

5. Add reagents as outlined below:<br />

Remember to rinse the 1 ml pipet thoroughly with distilled water<br />

before adding a new reagent. If you are using automatic micropipets,<br />

use a clean micropipet tip for each reagent.<br />

• Add 0.1 ml <strong>of</strong> PBS Buffer to the three wells in Row 1.<br />

(This is the negative control.)<br />

• Add 0.1 ml <strong>of</strong> "+" (positive) to the three wells in Row 2.<br />

(This is the positive control.)<br />

• Add 0.1 ml <strong>of</strong> Donor Serum “DS1” to the 3 wells in Row 3.<br />

• Add 0.1 ml <strong>of</strong> Donor Serum “DS2” to the 3 wells in Row 4.<br />

6. Incubate at 37°C for 15 minutes .<br />

7. Remove all the liquid from each well with the appropriately labeled<br />

transfer pipet.<br />

8. Wash each well once with PBS buffer (as described under "Liquid<br />

Removal and Washes").<br />

9. Add 0.1 ml <strong>of</strong> the anti-IgG peroxidase conjugate (2°Ab) to all 12<br />

wells.<br />

10. Incubate at 37°C for 15 minutes.<br />

At this time you can obtain the substrate to be used in step 13. Since the<br />

substrate must be prepared just prior to use, your instructor will prepare<br />

it towards the end <strong>of</strong> the incubation in step 10.<br />

11. Remove all the liquid from each well with the appropriately labeled<br />

transfer pipet.<br />

Quick Reference:<br />

The positive control, which<br />

contains IgG directed against <strong>HIV</strong><br />

antigens, is the primary antibody.<br />

Positive serum samples will also<br />

contain anti-<strong>HIV</strong> IgG, while<br />

negative serum samples will not<br />

contain anti-<strong>HIV</strong> IgG.<br />

12. Wash each well once with PBS buffer (as described under "Liquid<br />

Removal and Washes").<br />

13. Add 0.1 ml <strong>of</strong> the substrate to all 12 wells.<br />

14. Incubate at 37°C for 5 minutes.<br />

15. Remove the plate for analysis.<br />

16. If color is not fully developed after 5 minutes, incubate at 37°C for<br />

a longer period <strong>of</strong> time.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


12<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

Study Questions<br />

1. Describe the mechanism <strong>of</strong> ELISA. Why is ELISA so sensitive<br />

Why is it necessary to block unoccupied binding sites in the microtiter<br />

wells Why is it important to have a positive control<br />

2. Why can the onset <strong>of</strong> <strong>AIDS</strong> take several years<br />

3. Why is anti-<strong>HIV</strong>-1 IgG screened instead <strong>of</strong> the virus itself<br />

4. Why does the destruction <strong>of</strong> T H<br />

cells compromise the entire immune<br />

system How does <strong>HIV</strong> target T H<br />

cells<br />

5. Why are there so many immunological variants <strong>of</strong> <strong>HIV</strong><br />

6. The elimination <strong>of</strong> several steps in the ELISA could be accomplished<br />

if the primary antibody was made into an enzyme conjugate. Why<br />

is this generally not done What can cause a false positive in an<br />

ELISA<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

13<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

INSTRUCTOR'S GUIDE<br />

General Information<br />

APPROXIMATE TIME REQUIREMENTS FOR PRE-<br />

LAB AND EXPERIMENTAL PROCEDURES<br />

1. Pre-lab preparation <strong>of</strong> biologicals and reagents takes approximately<br />

one and one-half hours.<br />

2. The student experimental activity requires approximately 60 minutes.<br />

Pre-Lab Preparations<br />

PREPARATIONS BEFORE THE LAB<br />

Microtiter Plates<br />

1. As shown in Figure 1, orient the microtiter plates so that the numbers<br />

1-12 are at the top and the letters A-H are on your left.<br />

Row 1<br />

Row 2<br />

Row 3<br />

Row 4<br />

Row 1<br />

Row 2<br />

Row 3<br />

Row 4<br />

A<br />

B<br />

C<br />

D<br />

E<br />

F<br />

G<br />

H<br />

1 2 3 4 5 6 7 8 9 10 11 12<br />

cutting lines depicted by dashed lines<br />

2. Cut each plate on the dotted lines as<br />

shown in the figure. Each piece will be 3<br />

wells on one axis and 4 wells on the other<br />

axis. Each lab group will receive one<br />

piece.<br />

Dispensing Components A through D:<br />

3. Use a FRESH 1 ml pipet (provided) for<br />

dispensing each <strong>of</strong> the components A-D<br />

directly from the component tubes provided<br />

in this experiment kit. Label<br />

microtest tubes and dispense volumes as<br />

outlined in the chart "Quick Reference:<br />

Preparation <strong>of</strong> experiment reagents"<br />

which appears on Page 15.<br />

Figure 1<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


14<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

INSTRUCTOR'S GUIDE<br />

Pre-Lab Preparations,<br />

continued<br />

PREPARATIONS ON THE DAY OF THE LAB<br />

Preparation <strong>of</strong> Phosphate Buffered Saline<br />

1. Add all <strong>of</strong> the Phosphate Buffered Saline concentrate (H) to 270 ml<br />

<strong>of</strong> distilled water. Mix.<br />

2. Label this diluted Phosphate Buffered saline as “PBS”.<br />

3. Dispense 25 ml into small beakers for each <strong>of</strong> the 10 lab groups.<br />

Preparation <strong>of</strong> Anti-IgG Peroxidase Conjugate<br />

(Secondary Antibody)<br />

4. Add 0.3 ml <strong>of</strong> diluted Phosphate Buffered Saline (PBS) to the concentrated<br />

Anti-IgG peroxidase conjugate (E). Mix thoroughly by<br />

tapping and inverting the tube.<br />

5. Transfer 15 ml <strong>of</strong> diluted Phosphate Buffered Saline (PBS) to a 50<br />

ml plastic tube provided.<br />

6. Transfer the entire contents <strong>of</strong> tube E prepared in step 4 to the 50<br />

ml tube containing 15 ml <strong>of</strong> PBS. Label the tube "2°Ab" (Secondary<br />

Antibody). Mix.<br />

7. Dispense 1.4 ml <strong>of</strong> the diluted Anti-IgG peroxidase conjugate for<br />

each group.<br />

PREPARATION OF PEROXIDASE SUBSTRATE<br />

DURING THE LAB EXPERIMENT<br />

Quick Reference:<br />

The substrate is prepared for the<br />

peroxidase enzyme, which is<br />

attached to the anti-IgG<br />

peroxidase conjugate (secondary<br />

antibody).<br />

Prepare the substrate 15 - 30<br />

minutes before students require it<br />

for plate development (last<br />

incubation).<br />

Prepare 15 - 30 minutes before the last incubation:<br />

1. Dispense 13.5 ml <strong>of</strong> diluted Phosphate buffered saline (PBS) to the<br />

second 50 ml tube provided.<br />

2. Add Aminosalicylic acid (G) to the 13.5 ml <strong>of</strong> PBS. Cap and mix<br />

thoroughly by shaking and/or vortexing. There is usually undissolved<br />

material remaining.<br />

3. Then add 1.5 ml <strong>of</strong> Hydrogen peroxide (F). Cap and mix.<br />

4. Dispense 1.4 ml <strong>of</strong> the peroxidase substrate for each group.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

15<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

INSTRUCTOR'S GUIDE<br />

Quick Reference Tables<br />

Preparation <strong>of</strong> Experiment reagents<br />

Dispense for<br />

Label each group<br />

A* <strong>HIV</strong> Antigens <strong>HIV</strong> 1.4 ml<br />

B* Positive control + 0.4 ml<br />

C* Donor Serum # 1 DS 1 0.4 ml<br />

D* Donor Serum # 2 DS 2 0.4 ml<br />

E + PBS Anti-IgG-peroxidase-conjugate 2°Ab 1.4 ml<br />

PBS + F + G Peroxidase-enzyme substrate Substrate 1.4 ml<br />

H + water Phosphate Buffered Saline PBS 25.0 ml<br />

* Components A - D can be dispensed before the actual day <strong>of</strong> the lab and stored in the<br />

refrigerator. If these components are dispensed on the day <strong>of</strong> the lab, leave at room<br />

temperature.<br />

STUDENT MATERIALS<br />

Each Lab Group Should Receive:<br />

1 piece <strong>of</strong> microtiter plate<br />

1 tube labeled "<strong>HIV</strong>"<br />

1 tube labeled "+"<br />

1 tube labeled "DS 1"<br />

1 tube labeled "DS 2"<br />

1 tube labeled "2°Ab"<br />

1 1 ml pipet (or 1 automatic micropipet with tips)<br />

1 pipet pump<br />

5 Transfer pipets<br />

1 beaker containing 16 ml <strong>of</strong> PBS<br />

1 beaker containing approximately 100 ml <strong>of</strong> distilled water<br />

1 empty beaker labeled "waste"<br />

1 tube labeled "Substrate" (just before the last incubation)<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


16<br />

EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

INSTRUCTOR'S GUIDE<br />

Avoiding Common Pitfalls<br />

If you don't find answers to your<br />

questions in this section, call our<br />

Technical Service Department<br />

(1-800-338-6835)<br />

Mon - Fri<br />

9:00 am to<br />

5:00 pm EST<br />

24-hour FAX: (301) 340-0582<br />

email: edvotek@aol.com<br />

1. Students should be advised to be very careful when transferring<br />

solutions into and out <strong>of</strong> the microliter plate wells.<br />

2. Use only clean or appropriately labeled pipets and avoid contaminating<br />

adjacent wells.<br />

3. Do not attempt to empty the microliter wells by shaking it out.<br />

This will not work - it will result in contaminating adjacent wells.<br />

4. Wash the wells gently and slowly, without force.<br />

5. As an optional activity, the plates can be read in a microplate reader<br />

at 405 nm.<br />

Please have the following<br />

information:<br />

• The kit number and title<br />

• <strong>Kit</strong> lot number on box or tube<br />

• The literature version number<br />

(in lower right corner)<br />

• Approximate purchase date<br />

Expected Results<br />

Donor 2 should show positive for <strong>HIV</strong>.<br />

The color should look similar to the positive<br />

control.<br />

A<br />

B<br />

1 2 3<br />

C<br />

D<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM


EDVO-<strong>Kit</strong> # 271: <strong>AIDS</strong> <strong>Kit</strong> I: <strong>Simulation</strong> <strong>of</strong> <strong>HIV</strong>-1 <strong>Detection</strong><br />

17<br />

EDVOTEK • The Biotechnology<br />

Education Company ®<br />

INSTRUCTOR'S GUIDE<br />

Answers to Study Questions<br />

1. Adsorbed antigen is bound by an IgG. The bound IgG is itself<br />

bound by an IgG from another species. The second IgG is conjugated<br />

to a marker such as peroxidase which can produce colored<br />

products from certain substrates. If sites not occupied by antigens<br />

are not blocked, the primary and secondary antibodies will<br />

be non-specifically adsorbed as well, producing false positives.<br />

A positive control assures that the reagents and plates are working<br />

optimally. The sensitivity <strong>of</strong> the ELISA is due to the high<br />

catalytic turnover rates <strong>of</strong> the enzyme linked conjugate. One conjugate<br />

can generate millions <strong>of</strong> product molecules in a few minutes.<br />

2. <strong>HIV</strong> remains as a provirus until the T-cell is activated by a specific<br />

antigen.<br />

3. The <strong>HIV</strong> has a proviral phase. During the early stages <strong>of</strong> the disease<br />

very little circulating virus is present. In addition, the viral<br />

mutation rate is too high to dependably monitor with a given<br />

preparation <strong>of</strong> antibodies.<br />

4. T H<br />

cells produce lymphokines which are required for T-cytotoxic,<br />

B-cell and macrophage growth and maturation. The virus binds<br />

to T H<br />

cell CD4 receptors.<br />

5. High error rate <strong>of</strong> reverse transcriptase.<br />

6. For every antigen the corresponding IgG would have to be purified<br />

and conjugated. This is too labor intensive and not cost effective.<br />

False positives can be caused by the cross reactivity <strong>of</strong> an<br />

antibody. Occasionally, two unrelated antigens will be recognized<br />

by the same antibody. Inadequate blocking <strong>of</strong> the microtiter well<br />

will also give a false positive.<br />

Duplication <strong>of</strong> this document, in conjunction with use <strong>of</strong> accompanying reagents, is permitted for classroom/laboratory use only. This<br />

document, or any part, may not be reproduced or distributed for any other purpose without the written consent <strong>of</strong> EDVOTEK, Inc.<br />

Copyright © 1992,1993,1994,1996,1997,1998, EDVOTEK, Inc., all rights reserved.<br />

EVT 909168AM

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!