大仓鼠种群遗传多样性的季节性变化3
大仓鼠种群遗传多样性的季节性变化3
大仓鼠种群遗传多样性的季节性变化3
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48 (6) :733740 , 2002<br />
A cta Zoologica S inica <br />
3<br />
<br />
33 333 <br />
(<br />
, 100080)<br />
<br />
DNA (RAPD) , <br />
( Cricetu2<br />
lus t riton)<br />
, 209 <br />
( 60 , 45 , 59<br />
, 45 ) 87 , 8612 %<br />
; 4 <br />
,<br />
Shannon Nei <br />
: < < < ; <br />
, ; <br />
( , %) <br />
<br />
, Ford , <br />
RAPD <br />
<br />
, <br />
, <br />
22 (Myers et al . ,<br />
1974 ; Hansiki , 1987 ; Hansson et al . , 1988 ; Bat2<br />
zli , 1992 ; , 1996) Chitty RAPD <br />
, <br />
, <br />
, <br />
DNA , <br />
, , <br />
, <br />
<br />
, ( Chit2 , <br />
ty , 1967) , ( M icrot us sp. ) <br />
<br />
, , <br />
, <br />
( ,<br />
<br />
; , 2001 , 1998 ; , 1990 ; , 1999) <br />
38 , 13 ,<br />
Chitty , <br />
222 , 910 <br />
<br />
, <br />
, <br />
, <br />
, <br />
, <br />
<br />
, <br />
DNA (RAPD) , <br />
, <br />
( Seme2 <br />
, onoff et al . , 1968 ; Gaines et al . , 1971 ; , <br />
, 1983 ; Tamarin , 1985) , <br />
Ford <br />
, <br />
, <br />
<br />
, Ford <br />
( 111 <br />
, 1992) , <br />
, 1998 4 7 10 <br />
, <br />
, 12 <br />
2001207220 , 2001212210 <br />
3 <br />
( KSCX22SW2103 ; KSCX221203) <br />
(39730090 ; 39825105) <br />
33 E2mail : zhangzb @panda. ioz. ac. cn<br />
333 <br />
: <br />
, , 34 , <br />
: <br />
, <br />
<br />
Ford <br />
1
34 7 48 <br />
<br />
<br />
, 11512 Shannon <br />
( King et al . ,<br />
23 km <br />
, 200<br />
300 , 37 , <br />
, DNA Salah et al . (1997) ,<br />
H T = 1 - J T = 1 - (X 2 k ) / n<br />
( , 2001) , DNA <br />
4 <br />
, J T <br />
, J T = (X 2 k ) /<br />
n , X k = iwix ik , w i i (w i = 1) <br />
113 <br />
Operon , 81 <br />
6 , <br />
, D ij = (J i + J j ) / 2 - J ij , J ij i <br />
114 RAPD <br />
<br />
Williams et al .<br />
j <br />
: J ij =X ik X jk (1993) , ( G ST ) <br />
(D ST ) , <br />
: <br />
( H T ) :<br />
25 l , Tris2HCl 10 mmol/ L , p H 813 ,<br />
G ST = D ST / H T<br />
KCl 50 mmol/ L , MgCl 2 115 mmol/ L , 4 dN TP 11514 SPSS<br />
For Windows <br />
100 mol/ L , 8 pmol/ L , <br />
, K2S <br />
DNA 25 ng , 1 U Taq ( Promega ) , <br />
, Pearson<br />
PCR <br />
PE 9600<br />
RAPD <br />
94 5 min ,<br />
40 94 1 min , <br />
Fisher <br />
36 1 min , 72 2 min <br />
72 10 min RCR <br />
DNA <br />
0105 %<br />
114 %<br />
, DNA/ EcoR<br />
+ Hind 50 V , <br />
3 6 , 1 6 h , <br />
115 <br />
11511 <br />
RAPD <br />
0199 <br />
( , 2 6 <br />
4 1999) RAPD <br />
, RAPD 6 4 <br />
Kongkiatngam et al .<br />
1989)<br />
H = - p i log 2 p i ,<br />
4060 <br />
P i , H <br />
, 1998 <br />
<br />
( H pop ) 209 , 60 45 59 <br />
( H sp ) <br />
45 , 4 <br />
11513 Nei Nei (1973) <br />
<br />
DNA ,<br />
( H T ) <br />
( H S ) <br />
(D<br />
ST ) :<br />
, <br />
4 , H T = H S + D ST<br />
, 30 m , <br />
25 , H S = 1 - J S = 1 - ( J i ) / S<br />
10 m , 3 d<br />
S <br />
, J S ,<br />
: = (<br />
/ ) <br />
J S = ( J i ) / S , J i = (x 2 ik ) / n , J i i <br />
100 %<br />
<br />
, x ik i k <br />
112 <br />
D NA , n <br />
D ST = H T - H S D ST = ( D ij ) / S 2<br />
RAPD Shannon <br />
Nei <br />
; 2 <br />
211 RAPD <br />
6 <br />
RAPD <br />
, , <br />
(1995) RAPD <br />
87 , 75 <br />
<br />
, Shan2<br />
, <br />
01862 6 <br />
non <br />
(01679) ,
6 : 735<br />
<br />
(018) <br />
213 Nei : < < < ; , , <br />
, <br />
<br />
, <br />
,<br />
: < < < , <br />
(5) , Shannon <br />
<br />
Nei <br />
<br />
DNA , <br />
01118 01035 (6) , 1118 %<br />
<br />
, <br />
(8812 %) <br />
1 <br />
6 <br />
<br />
, 4 <br />
Table 1 The primers used to analyze seasonal changes in the , Shannon <br />
genetic diversity of Cricetulus triton populations and<br />
the proportion of polymorphic loci in these primers<br />
(5 23 )<br />
Primers Sequences<br />
<br />
<br />
Rate of<br />
Polymorphic<br />
Fragments<br />
polymorphism<br />
loci<br />
loci<br />
OPA04 AATCGGGCTG 15 11 01733<br />
OPA09 GTGATCGCAG 13 12 01923<br />
OPA18 AGGTGACCGT 14 13 01929<br />
OPH14 ACCAGGTTGG 17 17 1<br />
OPM06 CTGGGCAACT 11 7 01636<br />
OPY04 GGCTGCAATG 17 15 01882<br />
212 Shannon <br />
<br />
(61250) , (71207) (3) Shannon <br />
<br />
: < < <br />
Nei <br />
Nei <br />
, <br />
,<br />
(1) Shannon Nei <br />
, <br />
, <br />
< , <br />
1 Shannon ( 1/ 10) <br />
<br />
, Nei <br />
<br />
Fig. 1 Seasonal change in the proportion of<br />
86 %14 % , <br />
polymorphic loci , Shannon index and Neiπs index in a<br />
, <br />
(4) rat2like hamster population<br />
2 <br />
Table 2 The number and proportion of polymorphic loci in four seasonal populations of C.<br />
triton<br />
<br />
Primers<br />
<br />
Spring population Summer population Autumn population Winter population<br />
<br />
Polymorphic loci<br />
OPA04 11 (01733) 7 (01538) 6 (01462) 9 (01643) 11 (01733)<br />
OPA09 11 (01846) 11 (01846) 11 (01846) 8 (01667) 12 (01923)<br />
OPA18 12 (01857) 10 (01714) 10 (01714) 10 (01714) 13 (01929)<br />
OPH14 14 (01824) 13 (01765) 14 (01824) 15 (01882) 17 (11000)<br />
OPM06 7 (01636) 6 (01545) 6 (01545) 6 (01545) 7 (01636)<br />
OPY04 13 (01867) 14 (01875) 10 (01625) 10 (01714) 15 (01882)<br />
<br />
(Sum of loci)<br />
68 (018)<br />
<br />
61 (01726)<br />
<br />
57 (01679)<br />
<br />
58 (01707)<br />
<br />
75 (01862)
36 7 48 <br />
<br />
Table 3 Genetic diversity of C.<br />
3 Shannon <br />
triton in four seasons within a year detected using the Shannon index<br />
Primers OPA04 OPA09 OPA18 OPH14 OPM06 OPY04 Mean<br />
(Spring population) 61533 91248 81329 91313 21786 71034 71207<br />
(Summer population) 41198 91893 71260 81506 31278 81863 71000<br />
(Autumn population) 31869 71753 61455 101239 31256 51930 61250<br />
( Winter population) 51539 51750 71841 101420 41553 61082 61697<br />
4 Shannon <br />
Table 4 Genetic differentiation of rat2like hamster within and among four seasons detected using Shannon index<br />
Primers OPA04 OPA09 OPA18 OPH14 OPM06 OPY04 Mean<br />
<br />
H pop<br />
( Genetic diversity within population H pop )<br />
<br />
H sp<br />
( Genetic diversity in all populations H sp )<br />
<br />
H pop / H sp<br />
(Rate of genetic diversity within populations H pop / H sp )<br />
51035 81161 71471 91619 31468 61977 61789<br />
61011 91274 81539 111521 31805 81195 71891<br />
01838 01880 01875 01835 01912 01851 01860<br />
<br />
( H sp 2 H pop ) / H sp<br />
01162 01120 01125 01165 01088 01149 01135 01030<br />
(Rate of genetic diversity among populations) ( H sp 2 H pop ) / H sp<br />
5 Nei <br />
Table 5 Genetic diversity of four seasonal populations of C.<br />
triton detected using Neiπs index)<br />
Primers<br />
Spring population<br />
Summer population<br />
Autumn population<br />
Winter population<br />
OPA04 01271 01169 01165 01223<br />
OPA09 01369 01399 01299 01221<br />
OPA18 01288 01259 01226 01281<br />
OPH14 01242 01226 01273 01278<br />
OPM06 01165 01204 01203 01304<br />
OPY04 01198 01267 01175 01183<br />
SD (Means SD)<br />
01256 01073 01254 01079 01224 01054 01248 01046<br />
6 Nei <br />
Table 6 Genetic differentiation among four seasonal populations of C.<br />
triton detected using Neiπs index<br />
<br />
Primers<br />
<br />
<br />
<br />
H T<br />
H S<br />
Genetic diversity<br />
Genetic diversity<br />
Genetic diversity Genetic differentiation<br />
in all populations H T within populations H S among populations D ST among populations<br />
D ST<br />
G ST<br />
OPA04 01243 01207 01036 01147<br />
OPA09 01362 01322 01040 01110<br />
OPA18 01293 01264 01030 01101<br />
OPH14 01299 01255 01045 01149<br />
OPM06 01233 01219 01014 01059<br />
OPY04 01239 01206 01034 01141<br />
SD (Means SD)<br />
01278 01050 01245 01045 01033 01011 01118 01035
6 : 737<br />
<br />
7 <br />
( A, B, C, D , E, F) 4 <br />
Table 7 Statistitical signif icance of differences in frequencies of some RAPD<br />
fragments ( A, B, C, D , E, F) in C.<br />
triton in four seasons<br />
OPA04 OPA09 OPA18 OPH14 OPM06 OPY04A5<br />
A5 B5 B11 C6 C8 C11 D3 D16 E1 E5 E9 F5 F9 F10 F11 F15<br />
(Spring) 0158 0162 0170 0182 0145 0117 0113 0112 0108 0102 0133 0152 0130 0118 0128 0175<br />
(Summer) 0111 0156 0160 0162 0122 0113 0102 0109 0109 0136 0167 0184 0153 0124 0167 0149<br />
(Autumn) 0164 0171 0120 0168 0132 0112 0159 0153 0108 0132 0154 0195 0163 0169 0192 0129<br />
(winter) 0144 0196 0 0120 0158 0147 0127 0104 0140 0164 0182 0187 0138 0142 0144 0153<br />
- (Spring - summer) 333 3 3 3 333 333 333 3 333 33<br />
- (Spring - autumn) 333 333 333 333 3 333 333 333 333 333<br />
- (Spring - winter) 333 333 333 33 333 333 333 333 33 3<br />
- (Summer - autumn) 333 333 333 333 333 33 3<br />
- (Summer - winter) 333 333 333 333 333 333 33 333 33 3<br />
- (Autumn - winter) 3 33 33 333 3 333 33 333 333 33 33 3 33 333 3<br />
P < 0105 33 P < 0101 333 P < 01001<br />
214 RAPD <br />
<br />
RAPD <br />
10 12 2167 % , 3117 % ,<br />
518 % , 012 %12 <br />
, 7 <br />
, 7 , <br />
, 1012 ( ,<br />
,<br />
(B11) ; 1990) 413 % 3 4 <br />
<br />
, <br />
RAPD Shannon <br />
<br />
, C6 <br />
Nei RAPD <br />
012 , <br />
016 ( r = - 01840 , P = 01160 , n = 4 ) ;<br />
215 <br />
RAPD <br />
( r = -<br />
8 2 , <br />
01890 , P = 01110 , n = 4) ; Shannon <br />
010229 010409 , 010347 <br />
( r = - 01998 , P = 01002 ,<br />
, <br />
, <br />
n = 4) ; Nei <br />
( r = -<br />
, 01961 , P = 01039 , n = 4) <br />
8 4 <br />
Table 8 The genetic distance matrix of four<br />
seasonal populations of C.<br />
<br />
Spring<br />
(Spring) 0<br />
<br />
Summer<br />
(Summer) 010229 0<br />
triton<br />
<br />
Autumn<br />
(Autumn) 010376 010357 0<br />
<br />
Winter<br />
(Spring) 010409 010355 010353 0<br />
1998 <br />
4 , 7 ,<br />
2 <br />
4 <br />
UPGMA Fig. 2 The UPGMA distance graph of four<br />
seasonal populations of rat2like hamsters<br />
based on a genetic distance matrix<br />
3 <br />
216 <br />
, RADP RADP <br />
1998 <br />
179 , 160 Shannon Nei , <br />
, 8914 % , <br />
212 % , <br />
, ,
38 7 48 <br />
<br />
3 <br />
( , %) Fig. 3 The relationship between genetic diversity and population density ( trap success , %) in C.<br />
<br />
Semeonff et<br />
(3) , <br />
, al . (1968) ( M icrot us agrestis) <br />
<br />
Ford , <br />
, , , <br />
; <br />
, <br />
, , <br />
,<br />
, <br />
( Semeonoff et<br />
<br />
, <br />
, al . , 1968) Gaines et al . (1971) Leduc et al .<br />
<br />
; , (1975) ( Tf ) , <br />
<br />
, <br />
, (Lap) <br />
, <br />
, <br />
<br />
Chitty , <br />
, , <br />
Ford <br />
, <br />
, <br />
Shannon <br />
, <br />
, <br />
, , <br />
<br />
( Prior et al . , 1997) <br />
<br />
, <br />
, <br />
, RAPD <br />
<br />
, <br />
( 1983 ) ( M us<br />
<br />
, m uscul us)<br />
( Hb) 6 , <br />
( References) <br />
triton<br />
Batzli , G. O. 1992 Dynamics of small mammal populations : a review. In : McCullough , D. R. and R. H. Barrett ed. Wildlife 2001 : popula2<br />
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Hansiki , I. 1987 Population cycle of small mammals unless they donπt . TR EE 2 (3) : 5556.<br />
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( Abstract) <br />
SEASONAL CHANGES IN THE GENETIC DIVERSITY OF RAT2L IKE<br />
HAMSTER ( CRIC ETUL US TRI TON) POPULATIONS 3<br />
WAN G Yong2Qing ZHAN G Zhi2Bin 33 WAN G Yu2Shan<br />
XU Lai2Xiang WAN G Fu2Sheng CAO Xiao2Ping<br />
( State Key L aboratory of Integrated Pest Management of A gricult ure , Instit ute of Zoology ,<br />
Chi nese Academy of Sciences , Beiji ng 100080 , Chi na)<br />
The genetic diversity of rat2like hamster ( Cricet ul us t riton) populations in Hebei Province , China was in2<br />
vestigated using the randomly amplified polymorphic DNA (RAPD) method through the polymerase chain reac2<br />
tion ( PCR) . Eighty2seven discernible DNA fragments were isolated from the DNA of 209 rat2like hamsters<br />
(spring population 60 , summer population 45 , autumn population 59 , winter population 45) , of which over<br />
3 This work was supported by the Innovation Program of the Chinese Academy of Sciences (No. KSCX22SW2103 and KSCX221203) and Major<br />
Project Grants from the National Natural Science Foundation of China (No. 39730090 and 39825105)<br />
33 Corresponding author. zhangzb @panda. ioz. ac. cn
40 7 48 <br />
<br />
8612 % were polymorphic. The proportion of polymorphic loci , Shannon index and Neiπs index showed similar<br />
seasonal trends , genetic diversity being highest in spring and lowest in autumn irrespective of which method was<br />
used. These seasonal changes in genetic diversity do not support the Ford hypothesis. We propose a new hypoth2<br />
esis ,The Reproduction and Dispersal Balanced Hypothesis to explain the seasonal changes in genetic diversity<br />
we observed. The genetic diversity of a population cannot simply be described by the Ford hypothesis in terms of<br />
natural selection alone. The genetic relationship among individuals , which is mainly determined by dispersal , al2<br />
so affects the genetic diversity of a population.<br />
Key words Rat2like hamster ( Crecet ul us t riton) , RAPD , Genetic polymorphism , Genetic regulation , Popula2<br />
tion dynamics