04.01.2015 Views

大仓鼠种群遗传多样性的季节性变化3

大仓鼠种群遗传多样性的季节性变化3

大仓鼠种群遗传多样性的季节性变化3

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

48 (6) :733740 , 2002<br />

A cta Zoologica S inica <br />

3<br />

<br />

33 333 <br />

(<br />

, 100080)<br />

<br />

DNA (RAPD) , <br />

( Cricetu2<br />

lus t riton)<br />

, 209 <br />

( 60 , 45 , 59<br />

, 45 ) 87 , 8612 %<br />

; 4 <br />

,<br />

Shannon Nei <br />

: < < < ; <br />

, ; <br />

( , %) <br />

<br />

, Ford , <br />

RAPD <br />

<br />

, <br />

, <br />

22 (Myers et al . ,<br />

1974 ; Hansiki , 1987 ; Hansson et al . , 1988 ; Bat2<br />

zli , 1992 ; , 1996) Chitty RAPD <br />

, <br />

, <br />

, <br />

DNA , <br />

, , <br />

, <br />

<br />

, ( Chit2 , <br />

ty , 1967) , ( M icrot us sp. ) <br />

<br />

, , <br />

, <br />

( ,<br />

<br />

; , 2001 , 1998 ; , 1990 ; , 1999) <br />

38 , 13 ,<br />

Chitty , <br />

222 , 910 <br />

<br />

, <br />

, <br />

, <br />

, <br />

, <br />

<br />

, <br />

DNA (RAPD) , <br />

, <br />

( Seme2 <br />

, onoff et al . , 1968 ; Gaines et al . , 1971 ; , <br />

, 1983 ; Tamarin , 1985) , <br />

Ford <br />

, <br />

, <br />

<br />

, Ford <br />

( 111 <br />

, 1992) , <br />

, 1998 4 7 10 <br />

, <br />

, 12 <br />

2001207220 , 2001212210 <br />

3 <br />

( KSCX22SW2103 ; KSCX221203) <br />

(39730090 ; 39825105) <br />

33 E2mail : zhangzb @panda. ioz. ac. cn<br />

333 <br />

: <br />

, , 34 , <br />

: <br />

, <br />

<br />

Ford <br />

1


34 7 48 <br />

<br />

<br />

, 11512 Shannon <br />

( King et al . ,<br />

23 km <br />

, 200<br />

300 , 37 , <br />

, DNA Salah et al . (1997) ,<br />

H T = 1 - J T = 1 - (X 2 k ) / n<br />

( , 2001) , DNA <br />

4 <br />

, J T <br />

, J T = (X 2 k ) /<br />

n , X k = iwix ik , w i i (w i = 1) <br />

113 <br />

Operon , 81 <br />

6 , <br />

, D ij = (J i + J j ) / 2 - J ij , J ij i <br />

114 RAPD <br />

<br />

Williams et al .<br />

j <br />

: J ij =X ik X jk (1993) , ( G ST ) <br />

(D ST ) , <br />

: <br />

( H T ) :<br />

25 l , Tris2HCl 10 mmol/ L , p H 813 ,<br />

G ST = D ST / H T<br />

KCl 50 mmol/ L , MgCl 2 115 mmol/ L , 4 dN TP 11514 SPSS<br />

For Windows <br />

100 mol/ L , 8 pmol/ L , <br />

, K2S <br />

DNA 25 ng , 1 U Taq ( Promega ) , <br />

, Pearson<br />

PCR <br />

PE 9600<br />

RAPD <br />

94 5 min ,<br />

40 94 1 min , <br />

Fisher <br />

36 1 min , 72 2 min <br />

72 10 min RCR <br />

DNA <br />

0105 %<br />

114 %<br />

, DNA/ EcoR<br />

+ Hind 50 V , <br />

3 6 , 1 6 h , <br />

115 <br />

11511 <br />

RAPD <br />

0199 <br />

( , 2 6 <br />

4 1999) RAPD <br />

, RAPD 6 4 <br />

Kongkiatngam et al .<br />

1989)<br />

H = - p i log 2 p i ,<br />

4060 <br />

P i , H <br />

, 1998 <br />

<br />

( H pop ) 209 , 60 45 59 <br />

( H sp ) <br />

45 , 4 <br />

11513 Nei Nei (1973) <br />

<br />

DNA ,<br />

( H T ) <br />

( H S ) <br />

(D<br />

ST ) :<br />

, <br />

4 , H T = H S + D ST<br />

, 30 m , <br />

25 , H S = 1 - J S = 1 - ( J i ) / S<br />

10 m , 3 d<br />

S <br />

, J S ,<br />

: = (<br />

/ ) <br />

J S = ( J i ) / S , J i = (x 2 ik ) / n , J i i <br />

100 %<br />

<br />

, x ik i k <br />

112 <br />

D NA , n <br />

D ST = H T - H S D ST = ( D ij ) / S 2<br />

RAPD Shannon <br />

Nei <br />

; 2 <br />

211 RAPD <br />

6 <br />

RAPD <br />

, , <br />

(1995) RAPD <br />

87 , 75 <br />

<br />

, Shan2<br />

, <br />

01862 6 <br />

non <br />

(01679) ,


6 : 735<br />

<br />

(018) <br />

213 Nei : < < < ; , , <br />

, <br />

<br />

, <br />

,<br />

: < < < , <br />

(5) , Shannon <br />

<br />

Nei <br />

<br />

DNA , <br />

01118 01035 (6) , 1118 %<br />

<br />

, <br />

(8812 %) <br />

1 <br />

6 <br />

<br />

, 4 <br />

Table 1 The primers used to analyze seasonal changes in the , Shannon <br />

genetic diversity of Cricetulus triton populations and<br />

the proportion of polymorphic loci in these primers<br />

(5 23 )<br />

Primers Sequences<br />

<br />

<br />

Rate of<br />

Polymorphic<br />

Fragments<br />

polymorphism<br />

loci<br />

loci<br />

OPA04 AATCGGGCTG 15 11 01733<br />

OPA09 GTGATCGCAG 13 12 01923<br />

OPA18 AGGTGACCGT 14 13 01929<br />

OPH14 ACCAGGTTGG 17 17 1<br />

OPM06 CTGGGCAACT 11 7 01636<br />

OPY04 GGCTGCAATG 17 15 01882<br />

212 Shannon <br />

<br />

(61250) , (71207) (3) Shannon <br />

<br />

: < < <br />

Nei <br />

Nei <br />

, <br />

,<br />

(1) Shannon Nei <br />

, <br />

, <br />

< , <br />

1 Shannon ( 1/ 10) <br />

<br />

, Nei <br />

<br />

Fig. 1 Seasonal change in the proportion of<br />

86 %14 % , <br />

polymorphic loci , Shannon index and Neiπs index in a<br />

, <br />

(4) rat2like hamster population<br />

2 <br />

Table 2 The number and proportion of polymorphic loci in four seasonal populations of C.<br />

triton<br />

<br />

Primers<br />

<br />

Spring population Summer population Autumn population Winter population<br />

<br />

Polymorphic loci<br />

OPA04 11 (01733) 7 (01538) 6 (01462) 9 (01643) 11 (01733)<br />

OPA09 11 (01846) 11 (01846) 11 (01846) 8 (01667) 12 (01923)<br />

OPA18 12 (01857) 10 (01714) 10 (01714) 10 (01714) 13 (01929)<br />

OPH14 14 (01824) 13 (01765) 14 (01824) 15 (01882) 17 (11000)<br />

OPM06 7 (01636) 6 (01545) 6 (01545) 6 (01545) 7 (01636)<br />

OPY04 13 (01867) 14 (01875) 10 (01625) 10 (01714) 15 (01882)<br />

<br />

(Sum of loci)<br />

68 (018)<br />

<br />

61 (01726)<br />

<br />

57 (01679)<br />

<br />

58 (01707)<br />

<br />

75 (01862)


36 7 48 <br />

<br />

Table 3 Genetic diversity of C.<br />

3 Shannon <br />

triton in four seasons within a year detected using the Shannon index<br />

Primers OPA04 OPA09 OPA18 OPH14 OPM06 OPY04 Mean<br />

(Spring population) 61533 91248 81329 91313 21786 71034 71207<br />

(Summer population) 41198 91893 71260 81506 31278 81863 71000<br />

(Autumn population) 31869 71753 61455 101239 31256 51930 61250<br />

( Winter population) 51539 51750 71841 101420 41553 61082 61697<br />

4 Shannon <br />

Table 4 Genetic differentiation of rat2like hamster within and among four seasons detected using Shannon index<br />

Primers OPA04 OPA09 OPA18 OPH14 OPM06 OPY04 Mean<br />

<br />

H pop<br />

( Genetic diversity within population H pop )<br />

<br />

H sp<br />

( Genetic diversity in all populations H sp )<br />

<br />

H pop / H sp<br />

(Rate of genetic diversity within populations H pop / H sp )<br />

51035 81161 71471 91619 31468 61977 61789<br />

61011 91274 81539 111521 31805 81195 71891<br />

01838 01880 01875 01835 01912 01851 01860<br />

<br />

( H sp 2 H pop ) / H sp<br />

01162 01120 01125 01165 01088 01149 01135 01030<br />

(Rate of genetic diversity among populations) ( H sp 2 H pop ) / H sp<br />

5 Nei <br />

Table 5 Genetic diversity of four seasonal populations of C.<br />

triton detected using Neiπs index)<br />

Primers<br />

Spring population<br />

Summer population<br />

Autumn population<br />

Winter population<br />

OPA04 01271 01169 01165 01223<br />

OPA09 01369 01399 01299 01221<br />

OPA18 01288 01259 01226 01281<br />

OPH14 01242 01226 01273 01278<br />

OPM06 01165 01204 01203 01304<br />

OPY04 01198 01267 01175 01183<br />

SD (Means SD)<br />

01256 01073 01254 01079 01224 01054 01248 01046<br />

6 Nei <br />

Table 6 Genetic differentiation among four seasonal populations of C.<br />

triton detected using Neiπs index<br />

<br />

Primers<br />

<br />

<br />

<br />

H T<br />

H S<br />

Genetic diversity<br />

Genetic diversity<br />

Genetic diversity Genetic differentiation<br />

in all populations H T within populations H S among populations D ST among populations<br />

D ST<br />

G ST<br />

OPA04 01243 01207 01036 01147<br />

OPA09 01362 01322 01040 01110<br />

OPA18 01293 01264 01030 01101<br />

OPH14 01299 01255 01045 01149<br />

OPM06 01233 01219 01014 01059<br />

OPY04 01239 01206 01034 01141<br />

SD (Means SD)<br />

01278 01050 01245 01045 01033 01011 01118 01035


6 : 737<br />

<br />

7 <br />

( A, B, C, D , E, F) 4 <br />

Table 7 Statistitical signif icance of differences in frequencies of some RAPD<br />

fragments ( A, B, C, D , E, F) in C.<br />

triton in four seasons<br />

OPA04 OPA09 OPA18 OPH14 OPM06 OPY04A5<br />

A5 B5 B11 C6 C8 C11 D3 D16 E1 E5 E9 F5 F9 F10 F11 F15<br />

(Spring) 0158 0162 0170 0182 0145 0117 0113 0112 0108 0102 0133 0152 0130 0118 0128 0175<br />

(Summer) 0111 0156 0160 0162 0122 0113 0102 0109 0109 0136 0167 0184 0153 0124 0167 0149<br />

(Autumn) 0164 0171 0120 0168 0132 0112 0159 0153 0108 0132 0154 0195 0163 0169 0192 0129<br />

(winter) 0144 0196 0 0120 0158 0147 0127 0104 0140 0164 0182 0187 0138 0142 0144 0153<br />

- (Spring - summer) 333 3 3 3 333 333 333 3 333 33<br />

- (Spring - autumn) 333 333 333 333 3 333 333 333 333 333<br />

- (Spring - winter) 333 333 333 33 333 333 333 333 33 3<br />

- (Summer - autumn) 333 333 333 333 333 33 3<br />

- (Summer - winter) 333 333 333 333 333 333 33 333 33 3<br />

- (Autumn - winter) 3 33 33 333 3 333 33 333 333 33 33 3 33 333 3<br />

P < 0105 33 P < 0101 333 P < 01001<br />

214 RAPD <br />

<br />

RAPD <br />

10 12 2167 % , 3117 % ,<br />

518 % , 012 %12 <br />

, 7 <br />

, 7 , <br />

, 1012 ( ,<br />

,<br />

(B11) ; 1990) 413 % 3 4 <br />

<br />

, <br />

RAPD Shannon <br />

<br />

, C6 <br />

Nei RAPD <br />

012 , <br />

016 ( r = - 01840 , P = 01160 , n = 4 ) ;<br />

215 <br />

RAPD <br />

( r = -<br />

8 2 , <br />

01890 , P = 01110 , n = 4) ; Shannon <br />

010229 010409 , 010347 <br />

( r = - 01998 , P = 01002 ,<br />

, <br />

, <br />

n = 4) ; Nei <br />

( r = -<br />

, 01961 , P = 01039 , n = 4) <br />

8 4 <br />

Table 8 The genetic distance matrix of four<br />

seasonal populations of C.<br />

<br />

Spring<br />

(Spring) 0<br />

<br />

Summer<br />

(Summer) 010229 0<br />

triton<br />

<br />

Autumn<br />

(Autumn) 010376 010357 0<br />

<br />

Winter<br />

(Spring) 010409 010355 010353 0<br />

1998 <br />

4 , 7 ,<br />

2 <br />

4 <br />

UPGMA Fig. 2 The UPGMA distance graph of four<br />

seasonal populations of rat2like hamsters<br />

based on a genetic distance matrix<br />

3 <br />

216 <br />

, RADP RADP <br />

1998 <br />

179 , 160 Shannon Nei , <br />

, 8914 % , <br />

212 % , <br />

, ,


38 7 48 <br />

<br />

3 <br />

( , %) Fig. 3 The relationship between genetic diversity and population density ( trap success , %) in C.<br />

<br />

Semeonff et<br />

(3) , <br />

, al . (1968) ( M icrot us agrestis) <br />

<br />

Ford , <br />

, , , <br />

; <br />

, <br />

, , <br />

,<br />

, <br />

( Semeonoff et<br />

<br />

, <br />

, al . , 1968) Gaines et al . (1971) Leduc et al .<br />

<br />

; , (1975) ( Tf ) , <br />

<br />

, <br />

, (Lap) <br />

, <br />

, <br />

<br />

Chitty , <br />

, , <br />

Ford <br />

, <br />

, <br />

Shannon <br />

, <br />

, <br />

, , <br />

<br />

( Prior et al . , 1997) <br />

<br />

, <br />

, <br />

, RAPD <br />

<br />

, <br />

( 1983 ) ( M us<br />

<br />

, m uscul us)<br />

( Hb) 6 , <br />

( References) <br />

triton<br />

Batzli , G. O. 1992 Dynamics of small mammal populations : a review. In : McCullough , D. R. and R. H. Barrett ed. Wildlife 2001 : popula2<br />

tions. Elsevier , 831850.<br />

Chitty , D. 1967 The natural selection of self2regulatory behavior in animal populations. Proc. Ecol . Soc. A ust ralia 2 : 5178.<br />

Gaines , M. S. and C. J . Krebs 1971 Genetic changes in fluctuating vole populations. Evol ution 25 : 702723.<br />

Hansiki , I. 1987 Population cycle of small mammals unless they donπt . TR EE 2 (3) : 5556.<br />

Hansson , L . and H. Henttonen 1988 Rodent dynamics as community process. TR EE 3 (8) : 195200.<br />

King , L . M. and B. A. Schaal 1989 Ribosomal DNA variation and distribution in R udbckia missouriensis. Evol ution 43 : 1 1171 119.<br />

Kongkiatngam , P. M. , J . Waterway and M.<br />

pratense L . ) : comparisons of morphological , isozyme , and RAPD markers.<br />

G. Fortin 1995 Genetic variation within and between two cultivars of red clover ( Trif oli um<br />

Euphytica 84 : 237246.<br />

Leduc , J . and C. J . Krebs 1975 Demographic consequences of artificial selection at the Lap locus in voles ( Microt us tow nsendii) . Canadian J .<br />

Myers , J .<br />

Zool . 53 : 1 8251 840.<br />

H. and C. J . Krebs 1974 Population cycles in rodents. Scientif ic A merica 230 : 3846.<br />

Nei , M. 1973 Analysis of gene diversity in subdivided populations. Proc. N atl . Acad. Sci . USA 70 : 3 3213 323.<br />

Prior , K. A. , H. L . Gibbs and P. J . Weatherhead 1997 Population genetic structure in the black rat snake : implication for management .


6 : 739<br />

<br />

Conservation Biology 11 : 1 1471 158.<br />

Salah M. A. and M. Iciar 1997 Universal and rapid salt2extraction of high quality genomic DNA for PCR2based techniques. N ucleic Aci ds Re2<br />

search 25 : 4 6924 693.<br />

Semeonoff , R. and F. Robertson 1968 A biochemical and ecological study of plasma esterase polymorphism in natural populations of the field vole ,<br />

Microt us agrestis L . Biochem .<br />

Genet . 1 : 205227.<br />

Sun , R. Y. 1992 Principles of Animal Ecology (second edition) . Bejing : Bejing Normal University Press , 314316. [ 1992 <br />

( ) . : <br />

, 314316. ]<br />

Tamarin , R.<br />

H. 1985 Biology of New World Microt us. Boston : The American Society of Mammalogists , 845883.<br />

Wang , Y. Q. , X. G. Wang , L . X. Xu and Z. B. Zhang 2001 A new rapid method for extraction of high quality of genomic DNA from animal<br />

tissues. Chi nese Journal of Zoology 36 (1) : 2729. [ , , , 2001 <br />

DNA <br />

.<br />

36 (1) : 2729. ]<br />

Wang , Z.<br />

W. and Z. B. Zhang 1996 Theory and Practice of Rodent Pest Management . Bejing : Science Press , 145165. [ , <br />

1996 <br />

. : , 145165. ]<br />

Wei , W. , H. X. Wang , Z. A. Hu , M. Zhong , R. Yun and Y. Q. Qian 1999 Primary studies on molecular ecology of Caragana spp. popula2<br />

tions distributed over Maowusu sandy grassland : from RAPD data. Acta Ecologica Sinica 19 (1) : 1622.<br />

, , 1999 <br />

: RAPD . 19 (1) : 1622. ]<br />

[ , , , <br />

Williams , J . G. K. , M. K. Hanafey and J . A. Rafalski 1993 Genetic analysis using random amplified polymorphic DNA markers.<br />

Enzymology 218 : 704740.<br />

Methods i n<br />

Zhang , Z. B. , J . X. Zhang , F. S. Wang , Y. S. Wang , Y. Q. Wang and X. P. Cao 2001 Effect of imposed sterility and removal on<br />

reproductivity and population size of ratlike hamster in enclosures. Acta Zoologica Si nica 47 (3) : 241248.<br />

[ , , , , , 2001 <br />

. 47 (3) : 241248. ]<br />

Zhang , Z. B. , A. G. , Chen and Z. D. Ning 1999 Rodent Pest Management in Agricultural Ecosystems in China. Melbourne : Brown Prior An2<br />

derson , 261284.<br />

Zhang , Z. B. , J . Zhu , H. F. Yang , S. S. Hao and S. Q. Wang 1990 Modelling of seasonal dynamics of Cricet ul us t riton populations in Hebei ,<br />

China. Acta Zoologica Si nica 36 (2) : 136143.<br />

. 36 (2) : 136143. ]<br />

Zhang , Z. B. and Z.<br />

Zhou , Y.<br />

[ , , , , 1990 <br />

W. Wang 1998 Ecology and Management of Rodent Pests in Agriculture. Bejing : Ocean Press , 119. [ , <br />

1998 <br />

. : , 119. ]<br />

C. 1983 Temporal dynamics of the hemoglobin polymorphism in fluctuating population of feral house mouse. Acta Theriologica Si nica<br />

3 (1) : 6571. [ 1983 <br />

. 3 (1) : 6571. ]<br />

( Abstract) <br />

SEASONAL CHANGES IN THE GENETIC DIVERSITY OF RAT2L IKE<br />

HAMSTER ( CRIC ETUL US TRI TON) POPULATIONS 3<br />

WAN G Yong2Qing ZHAN G Zhi2Bin 33 WAN G Yu2Shan<br />

XU Lai2Xiang WAN G Fu2Sheng CAO Xiao2Ping<br />

( State Key L aboratory of Integrated Pest Management of A gricult ure , Instit ute of Zoology ,<br />

Chi nese Academy of Sciences , Beiji ng 100080 , Chi na)<br />

The genetic diversity of rat2like hamster ( Cricet ul us t riton) populations in Hebei Province , China was in2<br />

vestigated using the randomly amplified polymorphic DNA (RAPD) method through the polymerase chain reac2<br />

tion ( PCR) . Eighty2seven discernible DNA fragments were isolated from the DNA of 209 rat2like hamsters<br />

(spring population 60 , summer population 45 , autumn population 59 , winter population 45) , of which over<br />

3 This work was supported by the Innovation Program of the Chinese Academy of Sciences (No. KSCX22SW2103 and KSCX221203) and Major<br />

Project Grants from the National Natural Science Foundation of China (No. 39730090 and 39825105)<br />

33 Corresponding author. zhangzb @panda. ioz. ac. cn


40 7 48 <br />

<br />

8612 % were polymorphic. The proportion of polymorphic loci , Shannon index and Neiπs index showed similar<br />

seasonal trends , genetic diversity being highest in spring and lowest in autumn irrespective of which method was<br />

used. These seasonal changes in genetic diversity do not support the Ford hypothesis. We propose a new hypoth2<br />

esis ,The Reproduction and Dispersal Balanced Hypothesis to explain the seasonal changes in genetic diversity<br />

we observed. The genetic diversity of a population cannot simply be described by the Ford hypothesis in terms of<br />

natural selection alone. The genetic relationship among individuals , which is mainly determined by dispersal , al2<br />

so affects the genetic diversity of a population.<br />

Key words Rat2like hamster ( Crecet ul us t riton) , RAPD , Genetic polymorphism , Genetic regulation , Popula2<br />

tion dynamics

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!