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Large Scale Biomolecular Dynamics Simulations - prace

Large Scale Biomolecular Dynamics Simulations - prace

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Molecular <strong>Dynamics</strong><br />

1. Start with a system of particles with given<br />

coordinates<br />

2. Compute forces on each particle due to a<br />

(classical) energy function<br />

3. Integrate the particle positions<br />

4. Save coordinates and energies etc.<br />

5. Go to 2.<br />

Particles != Atoms<br />

onsdag, 2009 maj 13

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