Data Repository (CRC) Cell - i2b2

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Table of Contents Abstract_____________________________________________________________________ 4 1. Overview ________________________________________________________________ 5 1.1 CRC Definitions, Acronyms and Abbreviations __________________________________ 5 1.1.1 Patient Data Object (PDO): __________________________________________________________5 1.1.2 Setfinder Query: ___________________________________________________________________5 1.1.3 Observation Fact: __________________________________________________________________5 1.2 User Role __________________________________________________________________ 6 1.3 Security ___________________________________________________________________ 7 1.4 Scope of the system __________________________________________________________ 7 1.5 Assumptions/Constraints _____________________________________________________ 7 1.6 Technical Platform __________________________________________________________ 8 1.6.1 Transaction _______________________________________________________________________8 1.6.2 Security__________________________________________________________________________8 1.6.3 Persistence _______________________________________________________________________8 1.6.4 Reliability/Availability ______________________________________________________________9 1.6.5 Performance ______________________________________________________________________9 2. Use Case _______________________________________________________________ 10 2.1 Use Case: Run a Query from Panel Definition___________________________________ 10 2.1.1 CRC Query execution using Queue Model: _____________________________________________11 2.1.1.1 Sequence Diagram ____________________________________________________________11 2.1.1.2 Context Diagram _____________________________________________________________11 2.2 Use Case ― Get PDO from PatientSet _________________________________________ 12 3. Architecture Description __________________________________________________ 13 3.1 Components and Connector View _____________________________________________ 13 3.1.1 Client-Server View ________________________________________________________________13 3.1.1.1 Primary Presentation __________________________________________________________13 3.1.1.2 Element Catalog______________________________________________________________14 3.1.1.3 Relations and Their Properties ___________________________________________________15 3.1.1.4 Design Rationale, Constraints ___________________________________________________15 3.2 Module View type __________________________________________________________ 16 3.2.1 Decomposition Style_______________________________________________________________16 3.2.1.1 Primary Presentation __________________________________________________________16 3.2.1.2 Element Catalog______________________________________________________________16 3.2.1.3 Relations and their properties____________________________________________________17 3.2.1.4 Context Diagram _____________________________________________________________17 3.2.2 Uses Style _______________________________________________________________________17 3.2.2.1 Primary Presentation __________________________________________________________17 3.2.2.2 Element Catalog______________________________________________________________18 3.2.2.3 Relations and their properties____________________________________________________18 3.2.2.4 Context Diagram _____________________________________________________________18 3.3 Mappings of Styles _________________________________________________________ 19 Partners HealthCare Systems, Inc Page 2 of 22
4. Data View ______________________________________________________________ 20 4.1 Volumes __________________________________________________________________ 20 5. Deployment View ________________________________________________________ 21 5.1 Global Overview ___________________________________________________________ 21 5.2 Detailed deployment model __________________________________________________ 21 References _________________________________________________________________ 22 Partners HealthCare Systems, Inc Page 3 of 22
Page 1: Informatics for Integrating Biology
Page 5 and 6: 1. OVERVIEW The Clinical Research C
Page 7 and 8: Hive Management Track Role USER MAN
Page 9 and 10: 1.6.4 Reliability/Availability •
Page 11 and 12: e executed inside a small job queue
Page 13 and 14: 3. ARCHITECTURE DESCRIPTION As note
Page 15 and 16: It uses Project Management server t
Page 17 and 18: 3.2.1.3 RELATIONS AND THEIR PROPERT
Page 19 and 20: uses CRCServer uses PDO Webservice
Page 21 and 22: 5. DEPLOYMENT VIEW 5.1 Global Overv

Data Repository (CRC) Cell - i2b2

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