FreeSurfer Course - 3D Slicer

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Materials This tutorial requires the installation of the Slicer3.6- 2010-06-10 release software and the tutorial dataset. These materials are available at the following locations: • Slicer3.6 release version download page: http://www.slicer.org/pages/Special:SlicerDownloads Disclaimer: It is the responsibility of the user of Slicer to comply with both the terms of the license and with the applicable laws, regulations, and rules. Pujol S et al. National Alliance for Medical Image Computing http://na-mic.org ©2010,ARR
Materials This tutorial makes use of the same T1 weighted image dataset (bert) that is used for the FreeSurfer tutorial available at the following location: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial If you already have the FreeSurfer subject ‘bert’ on your computer, then just download the file ‘slicerGenericScene.mrml’ http://www.na-mic.org/Wiki/index.php/Image:SlicerGenericScene.mrml If you don’t have the FreeSurfer tutorial dataset known as ‘bert’ on your computer, then download the archive below: http://www.na-mic.org/Wiki/index.php/Image:FreeSurferData.tar.gz Pujol S et al. National Alliance for Medical Image Computing http://na-mic.org ©2010,ARR
Page 1 and 2: 3D Visualization of FreeSurfer Data
Page 3 and 4: Learning Objective Guide you step-b
Page 5: Prerequisites This tutorial assumes
Page 9 and 10: •Part 1: Loading and Visualizing
Page 11 and 12: FreeSurfer pipeline Loading a Brain
Page 13 and 14: Loading a Brain File Click on Selec
Page 15 and 16: Loading a Brain File Choose Image O
Page 17 and 18: Loading a Brain File Click on the l
Page 19 and 20: FreeSurfer pipeline Loading an ASEG
Page 21 and 22: Loading an ASEG File Select Label M
Page 23 and 24: Loading Loading an an ASEG ASEG Fil
Page 25 and 26: Overlay Overlay Brain Brain & & Seg
Page 27 and 28: Overlay Brain & Segmentation Left T
Page 29 and 30: • Building a Single Model • Bui
Page 31 and 32: Building a Single Model Choose Inpu
Page 33 and 34: Building a Single Model In the Mode
Page 35 and 36: The 3-dimensional model of the Righ
Page 37 and 38: Building Multiple Models Delete the
Page 39 and 40: Part 3: Loading FreeSurfer Surfaces
Page 41 and 42: Click on Add 3D model or a model di
Page 43 and 44: The surface of the White Matter of
Page 45 and 46: Visualizing Parcellation Maps Click
Page 47 and 48: Visualizing Parcellation Maps The P
Page 49 and 50: Loading a Generic Scene File Click
Page 51 and 52: Loading a Generic Scene File Copy t
Page 53 and 54: Loading a Generic Scene File Rename
Page 55 and 56: Loading a Generic Scene File The sc
Page 57 and 58:
Loading a Generic Scene File Select
Page 59 and 60:
Loading a Generic Scene File Slicer
Page 61 and 62:
Loading a Generic Scene File Click
Page 63 and 64:
From FreeSurfer, Slicer3 can load:
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FreeSurfer Course - 3D Slicer

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