Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights ...

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1678 allen g. collins et al.Fig. 5. Phylogenetic hypothesis based on mitochondrial 16S data (dataset 2). Phylogram of one of the 20 most parsimonious trees, with bootstrap indices underboth ML and MP at each node. ‘ , ’ indicates a bootstrap index of less than 61; a single 100 or , was placed at nodes if indices under both criteria were 100 or lessthan 61, respectively. For ML analyses, the assumed model of nucleotide evolution was K81uf þ I þ G. Scale bar is equivalent to 20 substitutions.or LSU had successfully been derived (Table 1; Figure 8), as wellas the seven outgroup hydroidolinans for which all threemarkers were available. For this dataset, two chimericalsequences were constructed. Mitochondrial 16S fromSolmundella bitentaculata from Antarctica was combinedwith nuclear SSU and LSU of S. bitentaculata from theMediterranean Sea. Mitochondrial 16S from Pantachogonhaeckeli from the central coast of California was combinedwith un-vouchered Genbank SSU and LSU sequences derivedfrom P. haeckeli from Californian coastal waters.Phylogenetic analysesPhylogenetic hypotheses were constructed under bothmaximum likelihood (ML) and maximum parsimony (MP)optimality criteria. Modeltest (Posada & Crandall, 1998) wasused, employing the Akaike information criterion, to choosethe most appropriate model for each of the datasets.Assuming these models, PAUP (Swofford, 2002) was usedto search (with 100 random addition replicates) for the topologywith the greatest likelihood and GARLI v0.951(Zwickl, 2006) was used to calculate ML bootstrap indicesfrom searches for 500 replicate datasets. PAUP was furtheremployed to find most parsimonious topologies, with 100random replicate searches and to calculate bootstrap indices(500 replicates, with 10 searches per replicate).R E S U L T SIn general, ML and MP topologies are congruent, only differingwhere bootstrap values are low under one or both criteria.Topologies, either ML or MP, for each of the five datasets arepresented as Figures 4–8. In addition, both ML and MP bootstrapindices are reported on these figures at each of the relevantnodes. Two main results are drawn from Figure 4 showing theML topology for the combined SSU and LSU analysis includingnon-hydrozoan taxa as outgroups. First, the representative ofActinulida, Halammohydra sp., does not appear to be an earlydiverging lineage of Hydrozoa, but is instead revealed as amemberofTrachylina.Second,Microhydrulalimopsicola(classifiedin the family Microhydrulidae within Limnomedusae) isshown to not be a member of Hydrozoa at all, but instead tohave a very close relationship to the stauromedusanHaliclystus octoradiatus.Figure 5 presents one of 20 MP trees based on our 16S data.Generally, nodes in the topology do not receive high support.There is a well-supported split between two clades, one containingspecies of Limnomedusae plus species of the trachymedusanfamily Geryoniidae and the other comprising allthe remaining trachymedusans, narcomedusans and the actinulidanHalammohydra sp. Other phylogenetic associationsthat receive method-independent (i.e. both MP and ML)support include: the limnomedusan genera Limnocnida and
phylogenetics of trachylina 1679Fig. 6. Phylogenetic hypothesis based on SSU data (dataset 3). Strict consensus of the 21 most parsimonious trees, with bootstrap indices under both ML and MPat each node. ‘ , ’ indicates a bootstrap index of less than 61; a single 100 or , was placed at nodes if indices under both criteria were 100 or less than 61,respectively. For ML analyses, the assumed model of nucleotide evolution was GTR þ I þ G.Fig. 7. Phylogenetic hypotheses based on LSU data (dataset 4). Left: strict consensus of the 12 most parsimonious trees with bootstrap indices under both ML andMP at each node. ‘ , ’ indicates a bootstrap index of less than 61; a single 100 or , was placed at nodes if indices under both criteria were 100 or less than 61,respectively. For ML analyses, the assumed model of nucleotide evolution was GTR þ I þ G. Right: ML topology with ML bootstrap indices for three nodesreceiving support under ML but not under MP; terminal taxa in the same order as shown on the left.
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