CUDA Treecode in Python App for Biomolecular Electrostatics | GTC ...

13.07.2015 • Views

Share Embed Flag

CUDA Treecode in Python App for Biomolecular Electrostatics | GTC ...

CUDA Treecode in Python App for Biomolecular Electrostatics | GTC ...

DOWNLOAD ePAPER

gputechconf.com

Create successful ePaper yourself

Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.

START NOW

<strong>Treecode</strong> on GPU‣ Parallelize over collocation po<strong>in</strong>tsP2Px iM2Py c15

1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30

CUDA contexts in Maya

Delite: Language Virtualization for Heterogeneous Parallel Computing

Duane Merrill (NVIDIA) - GPU Technology Conference

Advanced Driver Assistance System Testing Using OptiX - GPU ...

Schlumberger Information Solutions Application Delivery Platform

GPU-Accelerated Path Rendering - Presentation - GTC 2012

Culises: A Library for Accelerated CFD on Hybrid GPU-CPU Systems

What is path rendering?

KernelGen - GPU Technology Conference

Particle Dynamics with MBD and FEA Using CUDA

RAMSES on the GPU

GPU Performance Analysis and Optimization - GPU Technology ...

Sailfish: Lattice Boltzmann Fluid Simulations with GPUs and Python

Mixing Graphics and Compute with multiple GPUs, Alina Alt

Hardware Acceleration:e treecode on GPU.

<strong>Treecode</strong> on GPU‣ Parallelize over collocation po<strong>in</strong>tsP2Px iM2Py c15

Page 1: entity Standardst.GTC 2013CUDA tree
Page 4 and 5: Biomolecular Electrostatics:e model
Page 6 and 7: BEM discretization12 ⇥ 1(r i )N p
Page 8 and 9: GMRESSaad, Schultz (1986)8
Page 10 and 11: N-body problemr kr i10
Page 12 and 13: Treecodew(x i )=XN kj=1m 0 jG(x i ,
Page 14 and 15: Treecodew(x i ) ⇡PX||k||=01k! Dk
Page 16 and 17: Treecodew(x i ) ⇡PX||k||=01k! Dk
Page 18 and 19: Treecodew(x i ) ⇡PX||k||=01k! Dk
Page 22 and 23: Treecode on GPU - Results✓ =0.5P
Page 24 and 25: Multi-region models‣ Stern layers
Page 26 and 27: Lysozyme molecule: comparison with
Page 28 and 29: 1HIV protease22
Page 30: PyGBe:1) is code is open (find it o