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Development 126, 851-859 (<strong>1999</strong>)Printed in Great Britain © The Company of Biologists Limited <strong>1999</strong>DEV5281851REVIEW ARTICLEFossils, molecules and embryos: new perspectives on the CambrianexplosionJames W. <strong>V<strong>al</strong>entine</strong> 1, *, David Jablonski 2 and Douglas H. Erwin 31 Department of Integrative Biology and Museum of P<strong>al</strong>eontology, University of C<strong>al</strong>ifornia, Berkeley, CA 94720, USA2 Department of Geophysic<strong>al</strong> Sciences, University of Chicago, Chicago, IL 60637, USA3 Department of P<strong>al</strong>eobiology, NHB-121, Nation<strong>al</strong> Museum of Natur<strong>al</strong> History, Washington, DC 20560, USA*Author for correspondence (e-mail: jwv@ucmp1.berkeley.edu)Accepted 7 December 1998; published on WWW 2 February <strong>1999</strong>SUMMARYThe Cambrian explosion is named for the geologic<strong>al</strong>lysudden appearance of numerous m<strong>et</strong>azoan body plans(many of living phyla) b<strong>et</strong>ween about 530 and 520 millionyears ago, only 1.7% of the duration of the fossil record ofanim<strong>al</strong>s. Earlier indications of m<strong>et</strong>azoans are found in theNeoproterozic; minute trails suggesting bilaterian activitydate from about 600 million years ago. Larger and moreelaborate fossil burrows appear near 543 million years ago,the beginning of the Cambrian Period. Evidence ofm<strong>et</strong>azoan activity in both trace and body fossils thenincreased during the 13 million years leading to theexplosion. All living phyla may have originated by the endof the explosion. Molecular divergences among lineagesleading to phyla record speciation events that have beenearlier than the origins of the new body plans, which canarise many tens of millions of years after an initi<strong>al</strong>branching. Various attempts to date those branchings byusing molecular clocks have disagreed widely. While th<strong>et</strong>iming of the evolution of the development<strong>al</strong> systems ofliving m<strong>et</strong>azoan body plans is still uncertain, thedistribution of Hox and other development<strong>al</strong> control genesamong m<strong>et</strong>azoans indicates that an extensive patterningsystem was in place prior to the Cambrian. However, it islikely that much genomic repatterning occurred during theEarly Cambrian, involving both key control genes andregulators within their downstream cascades, as novel bodyplans evolved.Key words: Cambrian explosion, Fossil record, M<strong>et</strong>azoan phyla,Molecular phylogeny, Development<strong>al</strong> evolution, Molecular clockINTRODUCTIONThe explosive appearance near the beginning of the P<strong>al</strong>eozoicEra of diverse fossils representing disparate anim<strong>al</strong> clades haslong been a puzzle to p<strong>al</strong>eontologists and evolutionarybiologists. A vigorous p<strong>al</strong>eontologic<strong>al</strong> and geologic<strong>al</strong> researchprogram to investigate this ‘Cambrian explosion’ has yieldeda host of new fossils and much greater resolution for the timingof events during this extraordinary interv<strong>al</strong>. At the same time,advances in molecular systematics are resolving the topologyof the clades involved in this event. Further, the origin of thedisparate body plans has become appreciated as an importantdevelopment<strong>al</strong> problem, just as remarkable gains are beingmade in understanding the molecular underpinnings of patternformation across the m<strong>et</strong>azoan phyla. The stage is thus s<strong>et</strong> fora deeper understanding of this dramatic evolutionary episode.However, interpr<strong>et</strong>ations of these new data have beencontroversi<strong>al</strong>. Some workers claim that the data indicate thatthe explosion was of little biologic<strong>al</strong> importance, <strong>al</strong>l thesignificant events in m<strong>et</strong>azoan evolution having occurred muchearlier. Others view the data as confirmation of a majorevolutionary episode in the establishment of the Phanerozoicbiosphere. As we show here, the new data certainly docontribute to understanding the complex tempor<strong>al</strong> structure ofearly m<strong>et</strong>azoan evolution, but they do not muffle the explosion,which continues to stand out as a major feature in earlym<strong>et</strong>azoan history.THE FOSSIL RECORDThe earliest m<strong>et</strong>azoan fossilsOver the past five years, a firm tempor<strong>al</strong> framework has beenestablished in which the early fossil appearances can beordered. Relatively abundant, miner<strong>al</strong>ized fossil remains thatinclude living phyla appear in the record at about 530 millionyears ago (Ma), and for the next 9 or 10 million years, phylamake their appearances in geologic<strong>al</strong>ly rapid succession (Fig.1; Bowring <strong>et</strong> <strong>al</strong>., 1993). By the end of that time, <strong>al</strong>l but oneof the phyla with easily fossilizable skel<strong>et</strong>ons had appeared(the Bryozoa appear in the Early Ordovician, but this group isrich in unminer<strong>al</strong>ized representatives today, and the oldest


852J. W. <strong>V<strong>al</strong>entine</strong>, D. Jablonski and D. H. ErwinMaNeoproterozoic Phanerozoic EONCambrian PERIOD500550Top of Cambrian, base of OrdovicianBurgess Sh<strong>al</strong>e faunaChengjiang faunaCambrian explosion (530–520 Ma)Base of CambrianEdiacaran faunaFirst m<strong>et</strong>azoan body fossils600 First m<strong>et</strong>azoan traces?Fig. 1. Time sc<strong>al</strong>e and stratigraphic terms for late Neoproterozoicand Cambrian events mentioned in text.fossils are sufficiently derived to suggest a deeper evolutionaryhistory; P. D. Taylor, person<strong>al</strong> communication June 1998). Itis this relatively abrupt appearance of living phyla that has beendubbed the ‘Cambrian explosion.’ This event, which lasted lessthan 2% of the time from the base of the Cambrian to thepresent day, certainly represents a geologic<strong>al</strong>ly explosiveappearance of anim<strong>al</strong> body plans. Wh<strong>et</strong>her or not the explosioncoincides with the evolutionary origin of those body plans isstill hotly debated.Records of anim<strong>al</strong>s do precede the explosion and theyprovide evidence of earlier phases of m<strong>et</strong>azoan evolutionduring late Neoproterozoic time. Among the earliestindications of m<strong>et</strong>azoans are sm<strong>al</strong>l circular discs from theMacKenzie Mountains, northwestern Canada, that date fromb<strong>et</strong>ween 610 and 590 Ma (Hoffman <strong>et</strong> <strong>al</strong>., 1990) or perhaps abit younger. These discs probably represent pre-bilaterians.Creeping bilaterians, and some cnidarians (sea anemones;Collins <strong>et</strong> <strong>al</strong>., 1998), leave sh<strong>al</strong>low trails that can be preservedas ‘trace fossils.’ Creeping traces are described from rocks thatdate to about 600 Ma (Brasier and McIlroy, 1998) that maycontain faec<strong>al</strong> strings. If confirmed, these fossils would s<strong>et</strong> aminimum age for the evolution of compl<strong>et</strong>e guts, found onlyin bilaterians. There have been a number of reports of stillearlier anim<strong>al</strong> fossils but none is y<strong>et</strong> confirmed; most haveproven either not to represent anim<strong>al</strong>s or to have beenmisdated. The age of trace fossils from India inferred to dat<strong>et</strong>o over 1.1 billion years ago (Seilacher <strong>et</strong> <strong>al</strong>., 1998) requiresconfirmation by modern dating techniques.The remarkable discovery of exquisitely preservedNeoproterozoic eggs and embryos (Xiao <strong>et</strong> <strong>al</strong>., 1998) hasintroduced an entirely new line of evidence into the earlyhistory of Neoproterozoic anim<strong>al</strong>s. These embryos are theoldest unequivoc<strong>al</strong>ly m<strong>et</strong>azoan body fossils known; they havebeen recovered from phosphorite deposits on the YangtzePlatform in southern China that date to 570±20 Ma. Theembryos are particularly compelling, exhibiting well-definedcleavage stages (Fig. 2) and blastomere clusters that comprisestereoblastulae (Xiao <strong>et</strong> <strong>al</strong>., 1998). The presence of oogenesisand cleavage implies the establishment of adult m<strong>et</strong>azoans withsequestered germ cell lines and differentiated somatic celllineages. Unfortunately, the identity of the adults cannot beinferred from the embryos, which are interpr<strong>et</strong>ed as possibledirect developers, and therefore could have been sponges,diploblastic forms, bilaterians or even early members of theenigmatic Ediacaran fauna (Fig. 4G-I; Glaessner 1958), awidespread assemblage of body fossils that appeared inNeoproterozoic rocks about 565 Ma and ranged into theearliest Cambrian (Jensen <strong>et</strong> <strong>al</strong>., 1998) and perhaps later(Conway Morris, 1993; Crimes <strong>et</strong> <strong>al</strong>., 1995).The affinities of the Ediacaran body fossils are disputed.Some of these fossils are remarkably large (up to 1 m) but theyare preserved only as impressions that commonly lackphylogen<strong>et</strong>ic<strong>al</strong>ly informative anatomic<strong>al</strong> d<strong>et</strong>ail. Many of theseforms are either frond-like or discoid<strong>al</strong>, rec<strong>al</strong>ling livingcnidarians, y<strong>et</strong> some share an unusu<strong>al</strong>, quilted structure andhave other unique construction<strong>al</strong> features. This assemblagemay well include an extinct ‘vendobiont’ phylum (Seilacher,1992; Narbonne <strong>et</strong> <strong>al</strong>., 1997; Narbonne, 1998) tog<strong>et</strong>her withboth radiate (Buss and Seilacher, 1994) and bilaterian(Fedonkin and Wagner, 1997) m<strong>et</strong>azoans. However, therelations of any of these fossils to Cambrian bilaterians remainsuncertain and awaits further collecting and critic<strong>al</strong> an<strong>al</strong>ysis.Undoubted fossil trails and burrows accompany the earlyEdiacaran assemblages (Fig. 4F). Although associated bodyfossils are lacking, these traces are widely believed to recordbilaterians (e.g. Crimes, 1974, 1992; Brasier and McIlroy,1998). The anim<strong>al</strong>s that produced these traces are likely to beearly members of lineages involved in the Cambrian radiation,but the traces are consistent with the behavior of a vari<strong>et</strong>y ofvermiform organisms (see Collins <strong>et</strong> <strong>al</strong>., 1998), so that bodyplans cannot be reconstructed in d<strong>et</strong>ail. Carefully studiedNeoproterozoic trace assemblages differ significantly fromthose of the Cambrian (Crimes, 1992; Droser <strong>et</strong> <strong>al</strong>., 1998).Compared with Early Cambrian traces, for example,Neoproterozoic traces are minute (chiefly near 1 mm thoughranging to 5 mm), rare and of low diversity; there are fewpen<strong>et</strong>rating burrows and the sediment was not churned(‘bioturbated’) to any appreciable degree – the traces arechiefly or entirely surface trails (Droser <strong>et</strong> <strong>al</strong>., 1998). CambrianFig. 2. Phosphatized fossil embryos from the Neoproterozoic,570±20 million years old. (A) 2-cell stage. (B,C) Later cleavagestages, with intern<strong>al</strong> geom<strong>et</strong>ry of cells visible in C. From Xiao <strong>et</strong> <strong>al</strong>.(1998).


Perspectives on the Cambrian explosion853traces, by contrast, are commonly measured in cms, some arepen<strong>et</strong>rating burrows and they are accompanied by the earliestichnofabrics – sedimentary textures that result from the activityof organisms (Droser <strong>et</strong> <strong>al</strong>., 1998). The earliest miner<strong>al</strong>izedskel<strong>et</strong>ons, which are minute tubes, cones and gobl<strong>et</strong>s ofuncertain affinity, fin<strong>al</strong>ly appear in the late Neoproterozoic(Grotzinger <strong>et</strong> <strong>al</strong>., 1995).The Cambrian explosionAn important change in the definition of the Cambrian hasoften been overlooked. The Cambrian Period, the earliestPeriod of the P<strong>al</strong>eozoic Era and of the Phanerozoic Eon (Fig.1), is now defined to begin with the first occurrence of aparticular trace fossil – a type of burrow named Treptichnuspedum (formerly Phycodes; see Jensen, 1997) – in a section ofrocks now exposed in southeastern Newfoundland (Landingand Westrop, 1998) at a horizon dated to about 543 Ma(Bowring <strong>et</strong> <strong>al</strong>., 1993). Probably the burrower was a worm ofsome kind; we are not sure just what it looked like, butwhatever anim<strong>al</strong> left that earliest trace in Newfoundland beganlife in the Proterozoic and died in the Phanerozoic, achievinga speci<strong>al</strong> place in history. The newly defined base of theCambrian considerably lengthens the duration of theCambrian, adding 13 million years below the diverseskel<strong>et</strong>onized fossils of the explosion. During this earliestCambrian time, trace fossils form the chief evidence ofm<strong>et</strong>azoan life, harbingers of the coming explosion (Fig. 1).Beginning with T. pedum, the traces document an increase inmaximum body size and a broadening range of activities (Zhu,1997; Droser <strong>et</strong> <strong>al</strong>., 1998). Miner<strong>al</strong>ized skel<strong>et</strong>ons – mostlysm<strong>al</strong>l tubes, cones and isolated sclerites – beginto occur in some numbers during the last 3 to 6million years of this interv<strong>al</strong>, gradu<strong>al</strong>lyincreasing in diversity until the classicexplosion began (Brasier <strong>et</strong> <strong>al</strong>., 1996; Kaufman<strong>et</strong> <strong>al</strong>., 1996).This emerging portrait of the Cambrianexplosion differs significantly from the one thatwe had just a few years ago. Prior to 1993, theEdiacaran fossils were believed to date to 650Ma, with a gap of tens of millions of yearsleading up to a Cambrian explosion, the ons<strong>et</strong>of which was dated at anywhere from 540 to600 Ma. Now the Ediacaran interv<strong>al</strong> is knownto extend to within about 13 million years of thestart of the classic explosion, and theintervening rocks bear traces and other evidenc<strong>et</strong>hat m<strong>et</strong>azoan life was picking up evolutionarymomentum.The diverse assemblages of marineinvertebrate skel<strong>et</strong>ons that sign<strong>al</strong> the explosioninclude the first appearances of body fossils ofliving bilaterian phyla, represented bynumerous, chiefly extinct, classes and orders(see Lipps and Signor, 1992; Bengtson, 1994).Furthermore, an exception<strong>al</strong> fossil loc<strong>al</strong>ity inYunnan Province, China, has yielded a richassemblage of soft-bodied organisms, theChengjiang fauna (Fig. 4A-E), whichestablishes the presence of manyunskel<strong>et</strong>onized major anim<strong>al</strong> groups, living andextinct (Hou <strong>et</strong> <strong>al</strong>., 1991; Chen and Zhou, 1997). Both the fossilrecord and molecular phylogenies (Fig. 5) are consistent withthe origination of <strong>al</strong>l living anim<strong>al</strong> phyla by the close of this10 million year explosion interv<strong>al</strong>. Following this time, newappearances of major groups are rare, even though rich faunasabound and some exception<strong>al</strong> later faunas, such as from thefamous Burgess Sh<strong>al</strong>e loc<strong>al</strong>ity, have been carefully studied. Onthe face of it, the Cambrian explosion was an impressiveevolutionary event from which emerged many of the distinctivebody plans that characterize modern groups.A number of an<strong>al</strong>yses have quantified evolutionary changesin m<strong>et</strong>azoan morphologies independently of d<strong>et</strong>ailedtaxonomic or phylogen<strong>et</strong>ic data. These studies have found theearly P<strong>al</strong>eozoic to be typified by morphologic<strong>al</strong> bursts, incontrast to the more gradu<strong>al</strong> expansions seen later in thehistories of major groups (<strong>al</strong>though there was perhaps asecondary pulse following the massive end-P<strong>al</strong>eozoicextinction; see Foote, 1997 for review). Certainly the Cambrianwitnessed a burst; Thomas and Stewart (1995) found that theMiddle Cambrian Burgess Sh<strong>al</strong>e fauna <strong>al</strong>one utilized 83% ofthe possible elements in a multidimension<strong>al</strong> ‘skel<strong>et</strong>on space’that attempts to capture the important features of skel<strong>et</strong><strong>al</strong>design found in living and extinct anim<strong>al</strong>s. Considering thatthe pre-explosion skel<strong>et</strong>ons exhibited a limited range of form,this result is consistent with the taxonomic evidence of animportant Cambrian diversification.The significance of the explosion has nevertheless beenquestioned on a number of grounds. For example, Wills <strong>et</strong> <strong>al</strong>.(1994) argue that taxonomic data overestimate the morphologic<strong>al</strong>magnitude of the Cambrian explosion. By quantifying aspects ofPreC P<strong>al</strong>eozoic Mesozoic CenoVendian C O S D C P Tr Jr KCnidaria Porifera •Mollusca Brachiopoda•Ctenophora Priapulida Onychophora Arthropoda Phoronida Annelida Echinodermata Chordata•Hemichordata •Tardigrada •Bryozoa •Nematoda•Nemertina•Entoprocta •Rotifera •Nematomorpha •Placozoa “Mesozoa” Platyhelminthes Gnathostomulida Gastrotricha Acanthoceph<strong>al</strong>a Loricifera Kinorhyncha Sipuncula •Fig. 3. The earliest appearance of body fossils of living phyla in geologic time. Allwell-skel<strong>et</strong>onized phyla except Bryozoa are known from the Early Cambrian. Firstrecords of soft-bodied forms are scattered through time from loc<strong>al</strong>ities whereunusu<strong>al</strong>ly favorable preservation has occurred. Modified from <strong>V<strong>al</strong>entine</strong> (1995).


854J. W. <strong>V<strong>al</strong>entine</strong>, D. Jablonski and D. H. ErwinFig. 4. Representative m<strong>et</strong>azoan fossils from the post-explosion Lower Cambrian (upper row, A-E) and the pre-explosion Neoproterozoic(lower row, F-I). (A). Maotianshania, a priapulid. (B) Fuxianhuia, probably a rather bas<strong>al</strong> arthropod; (C) Xandarella, probably <strong>al</strong>lied to thearachnomorph arthropods. (D) Jiangfengia, one of the ‘great appendage’ arthropods. (E) Eldonia, a pelagic form of uncertain affinities; note thecurved digestive tract. Forms A-E, from the Chengjiang Formation, Yunnan, China, are b<strong>et</strong>ween 1.7 and 6 cm in greatest dimension (see Chenand Zhou, 1997; figures courtesy of the US Nation<strong>al</strong> Museum of Natur<strong>al</strong> History). (F) Helminthoidichnites, fossil trails; Blueflower Formation,Mackenzie Mountains, northwestern Canada (from Narbonne and Aitken, 1990). (G). Charnia masoni, a quilted organism; Ust PinegaFormation, White Sea, Russia (from Fedonkin, 1981). (H) Dickinsonia, possibly a quilted organism; Ediacara member, Rawnsley Quartzite,Austr<strong>al</strong>ia (from Narbonne, 1998). (I). Ediacaria, a benthic cnidarian-like form, bas<strong>al</strong> view to show stem, Sheepbed Formation, MackenzieMountains, northwestern Canada (from Narbonne and Aitken, 1990). Body fossils of these forms can be large; Dickinsonia may reach 1 m.Photos F-I courtesy of Guy M. Narbonne.arthropod morphology, they established that the living arthropodfauna is just as disparate morphologic<strong>al</strong>ly as that of the Cambrian.However, the Recent arthropod fauna has benefitted from a h<strong>al</strong>fbillionyears or so of subsequent diversification, while theCambrian fossils are close in time to the initi<strong>al</strong> arthropodradiations (no undisputed arthropods have been found that areolder than 530 Ma, the ons<strong>et</strong> of the explosion). Therefore, thesedata simply reve<strong>al</strong> that arthropod disparity was achieved early andhas not been exceeded even today.A subdued explosion has <strong>al</strong>so been inferred from aphylogen<strong>et</strong>ic an<strong>al</strong>ysis of the morphology of Cambrian andRecent arthropods (Wills <strong>et</strong> <strong>al</strong>., 1994; Conway Morris, 1998).In the resulting tree, many bizarre Cambrian forms nest withinthe arthropods, and thus are held to lie within themorphologic<strong>al</strong> limits of the group. These results providewelcome phylogen<strong>et</strong>ic structure to early arthropod evolution,but the tree is constructed on the basis of shared characters,while disparity results in large part from taxon-specific traitsthat arise as lineages diverge. Thus, tree topology capturesneither the rate nor the extent of the divergences.MOLECULES AND CLOCKSA new view of m<strong>et</strong>azoan phylogenyIn recent years, molecular evidence has produced a new viewof m<strong>et</strong>azoan phylogeny, prompting new an<strong>al</strong>yses ofmorphologic<strong>al</strong>, ultrastructur<strong>al</strong> and development<strong>al</strong> characters.The usu<strong>al</strong> m<strong>et</strong>azoan phylogeny placed sponges at the base,followed by cnidarians, then flatworms, and then a number ofacoelomates and pseudocoelomates (including nematodes),som<strong>et</strong>imes grouped as ‘aschelminths’ or ‘paracoelomates’.This sequence of taxa was thought to represent increasinglycomplex grades, often depicted as the trunk of an evolutionarytree. The trunk then underwent a major divergence thatestablished the deuterostome and protostome branches of the‘higher m<strong>et</strong>azoans.’ Lophophorates (brachiopods, phoronidsand bryozoans) were som<strong>et</strong>imes placed in one, som<strong>et</strong>imes inthe other, and som<strong>et</strong>imes in b<strong>et</strong>ween those branches. The newdata, primarily from 18S rRNA but more recently fromaddition<strong>al</strong> molecules, indicate a very different configuration(Fig. 5). Although resolution of the branching pattern within


Perspectives on the Cambrian explosion855the major groups has been a ch<strong>al</strong>lenge (though this difficultyis not in itself convincing evidence for a rapid evolutionaryburst; see Abouheif <strong>et</strong> <strong>al</strong>., 1998), the new basic frameworkappears robust. Some changes should be expected in theplacement of groups within the framework, especi<strong>al</strong>ly groupswherein relatively few taxa have been sampled.Four major m<strong>et</strong>azoan <strong>al</strong>liances can now be identified: the prebilaterians(a paraphyl<strong>et</strong>ic grouping that includes sponges,ctenophores, cnidarians, and placozoans) and three bilaterianclades consisting of the deuterostomes, ecdysozoans andlophotrochozoans (Aguin<strong>al</strong>do <strong>et</strong> <strong>al</strong>., 1997; Girib<strong>et</strong> and Ribera,1998; <strong>V<strong>al</strong>entine</strong>, 1998; B<strong>al</strong>avoine, 1998). The deuterostomebranch (echinoderms, hemichordates and chordates) has beenpared by the remov<strong>al</strong> of a number of phyla now assignedelsewhere. The protostome branch has been subdivided into twomajor branches, each with more phyla than the deuterostomes.The ecdysozoans consist of molting anim<strong>al</strong>s in a clade thatincludes the arthropods, tardigrades, onychophorans and <strong>al</strong>sosome ‘aschelminths’ – priapulids, nematodes and their <strong>al</strong>lies(Aguin<strong>al</strong>do <strong>et</strong> <strong>al</strong>., 1997). The lophotrochozoans include theclassic spir<strong>al</strong>ians such as molluscs, annelids and their <strong>al</strong>lies (theEutrochozoa: Ghiselin, 1988; Eernisse <strong>et</strong> <strong>al</strong>., 1992), someaschelminth phyla, the lophophorates (H<strong>al</strong>anych <strong>et</strong> <strong>al</strong>., 1995;Cohen <strong>et</strong> <strong>al</strong>., 1998) and rhabodocoel flatworms (H<strong>al</strong>anych <strong>et</strong> <strong>al</strong>.,1995; B<strong>al</strong>avoine, 1997; Carranza <strong>et</strong> <strong>al</strong>., 1997). The aschelminthshave thus been split into at least two groups, one within theEcdysozoa and the other within the Lophotrochozoa (seeWinnepenninckx <strong>et</strong> <strong>al</strong>., 1995; W<strong>al</strong>lace <strong>et</strong> <strong>al</strong>., 1996). A numberof important problems remain regarding the relationships ofm<strong>et</strong>azoan phyla, especi<strong>al</strong>ly of the former aschelminth phyla andCHORDATAHEMICHORDATADEUTEROSTOMIAof some flatworms (see Carranza <strong>et</strong> <strong>al</strong>., 1997, and Campos <strong>et</strong> <strong>al</strong>.,1998). A few taxa with markedly diverged 18S rRNA sequences,such as acoel flatworms, continue to defy confident assignmentto any of the <strong>al</strong>liances. Fin<strong>al</strong>ly, a large morphologic gap remainsb<strong>et</strong>ween the pre-bilaterians and the living bilaterians, a gap thatis <strong>al</strong>so apparent in 18S rRNA (Wainright <strong>et</strong> <strong>al</strong>., 1993) and Hoxgene data (Schierwater and Kuhn, 1998). A fifth, paraphyl<strong>et</strong>ic<strong>al</strong>liance, chiefly of primitive bilaterians, probably fell within thisgap; those taxa are presumably extinct, <strong>al</strong>though some livingforms now assigned to flatworms may possibly belong there.Of particular interest to development<strong>al</strong> biologists in this newview of m<strong>et</strong>azoan phylogeny are the shifts of once-bas<strong>al</strong>bilaterian taxa to positions higher on the tree, with the nematodesnow in the Ecdysozoa and most, perhaps <strong>al</strong>l, flatworms in theLophotrochozoa. The topologies of the relationships within the<strong>al</strong>liances remain less certain. The difficulties probably stem fromthe necessary use of slowly evolving molecules, such as 18SrRNA, to investigate events of over h<strong>al</strong>f a billion years ago. Forlineages that branched in rapid succession, there may not havebeen enough time b<strong>et</strong>ween branchings for informative moleculardifferences to accumulate, or to be preserved over more than h<strong>al</strong>fa billion years of subsequent evolution. Unusu<strong>al</strong> substitutionrates or patterns can <strong>al</strong>so obscure the phylogen<strong>et</strong>ic sign<strong>al</strong> in themolecules. Addition<strong>al</strong> molecules are being brought under study,however, and promise to provide increasing resolution ofm<strong>et</strong>azoan relationships.The present molecular phylogeny suggests some key pointsin m<strong>et</strong>azoan history that are marked by interesting changes inregulatory genes, despite the phylogen<strong>et</strong>ic uncertainties and thelimitations of PCR-based studies (Fig. 6). The ancestr<strong>al</strong>ecdysozoan had at least six Hox genes, and thus the sm<strong>al</strong>l andaberrant four-gene Hox cluster of nematodes has evidentlybeen reduced and modified from a larger cluster. Otherevolutionary changes in Hox gene assemblages have beenECHINODERMATAARTHROPODATARDIGRADAONYCHOPHORANEMATODANEMATOMORPHAPRIAPULIDAKINORHYNCHABRYOZOABRACHIOPODAPHORONIDAANNELIDAMOLLUSCASIPUNCULAPLATYHELMINTHESPLACOZOACNIDARIAPORIFERAECDYSOZOALOPHOTROCHOZOAPRE-BILATERIANSFig. 5. A m<strong>et</strong>azoan phylogeny based chiefly on SSU rRNA data andon early development<strong>al</strong> features. The pre-bilaterians may not besisters. (From H<strong>al</strong>anych <strong>et</strong> <strong>al</strong>., 1995, Aguin<strong>al</strong>do <strong>et</strong> <strong>al</strong>., 1997, andvarious sources cited in <strong>V<strong>al</strong>entine</strong>, 1998).PROTOSTOMIABILATERIA6●6●9 ●8●13 VERTEBRATA10 CEPHALOCHORDATA10 ECHINODERMATA8 ARTHROPODA8 ONYCHOPHORA4 NEMATODA8 ANNELIDA10 PLATYHELMINTHES1 PLACOZOA6? CNIDARIAChordataEcdysozoa DeuterostomiaLophotrochozoaPre-bilateriansFig. 6. Numbers of Hox genes found in some m<strong>et</strong>azoan phyla, andtheir implications for the minimum numbers of Hox genes at someancestr<strong>al</strong> bilaterian nodes in the phylogen<strong>et</strong>ic tree based on theirorthologous relations; both gains and losses of Hox genes areimplied. Working up the tree, addition<strong>al</strong> genes must be par<strong>al</strong>ogs,while fewer genes indicate loss of orthologs. Exceptions are the prebilaterians,which may not be sisters, and whose Hox genes are notknown to be orthologs of any given bilaterian Hox genes. From datain Kenyon and Wang (1991); Garcia-Fernandez and Holland (1994);Krumlauf (1994); B<strong>al</strong>avoine and Telford (1995); Grenier <strong>et</strong> <strong>al</strong>.(1997); Irvine <strong>et</strong> <strong>al</strong>. (1997); Mito and Endo (1997); Schierwater andKuhn (1998); and references therein.ProtostomiaBilateria


856J. W. <strong>V<strong>al</strong>entine</strong>, D. Jablonski and D. H. Erwinidentified on the ecdysozoan tree; for example, a par<strong>al</strong>ogoussplit of an ancestr<strong>al</strong> Hox gene produced the sister genes Ubxand abdA in the onychophoran/arthropod clade (Grenier <strong>et</strong> <strong>al</strong>.,1997). Important evolutionary changes have clearly occurredin Hox genes, both losses and gains, among most other phyla;indeed the usu<strong>al</strong> (but not univers<strong>al</strong>) case is that each phylumhas a distinctive Hox gene suite. It is possible that many ofthose changes were intimately associated with the evolution ofnovel body plans and, therefore, were implicated in theCambrian explosion. The presence of the large Hox array inthe protostome-deuterostome ancestor, well before theexplosion, indicates that the simple assembly of a suite of Hoxgenes was not sufficient to trigger a m<strong>et</strong>azoan radiation. Whenthe radiation came, the repatternings of body plans seem tohave been associated with modifications in the Hoxassemblage, and with many regulatory changes downstream ofthose genes as well (see Gellon and McGinnis, 1998).The involvement in the Cambrian explosion of many of theother development<strong>al</strong> control genes that are conserved acrossbroad phylogen<strong>et</strong>ic distances seems certain and it will befascinating as the d<strong>et</strong>ails of this history are worked out.However, function<strong>al</strong> roles have not <strong>al</strong>ways been conserved; sofor example, Pax-6 function in eyes of both deuterostomes andecdysozoans (Quiring <strong>et</strong> <strong>al</strong>., 1994; H<strong>al</strong>der <strong>et</strong> <strong>al</strong>., 1995) does notrequire that their last common ancestor had eyes (see Erwin,1998). Working out of the body plans of extinct, ancestr<strong>al</strong> taxawill require input from fossils and phylogen<strong>et</strong>ics.When did major lineages diverge?The lineages leading to extant body plans could have divergedwell before the acquisition of the distinctive characters thatnow differentiate them. Thus, the dating of divergence timesmust be estimated indirectly. Most such estimates usemolecular clocks, which assume that mutations accumulatelinearly over time. The average rate of sequence change withina molecule is c<strong>al</strong>ibrated against well-dated branching eventsfrom the Phanerozoic fossil record. This rate of change is thenextrapolated to estimate the time of divergence of phyla.Unfortunately, molecular evolution has not been clock-like:rates of change in DNA sequences vary widely among taxa (fora gener<strong>al</strong> ev<strong>al</strong>uation see Hillis <strong>et</strong> <strong>al</strong>., 1996). For example, rDNArates appear to vary by a factor of three for different clades ofsea urchins (Smith <strong>et</strong> <strong>al</strong>., 1992), a factor of five for differentclades of seastars (Lafay <strong>et</strong> <strong>al</strong>., 1995) and by up to two ordersof magnitude for different clades of foraminifera (Pawlowski<strong>et</strong> <strong>al</strong>., 1997). Different genes in the same clades can evolve atradic<strong>al</strong>ly different rates (Ay<strong>al</strong>a, 1997), different parts of genesevolve at different rates and, most importantly, rates withinclades have changed over time (Goodman <strong>et</strong> <strong>al</strong>., 1987; Lake,1990; Ay<strong>al</strong>a, 1997). A vari<strong>et</strong>y of corrections has been proposedin attempts to de<strong>al</strong> with these and other rate inconsistencies,and molecular clock estimates have been applied to manymajor events in m<strong>et</strong>azoan history (for example Runnegar,1982; Wray <strong>et</strong> <strong>al</strong>., 1996; Nikoh <strong>et</strong> <strong>al</strong>., 1997; Ay<strong>al</strong>a <strong>et</strong> <strong>al</strong>., 1998;Bromham <strong>et</strong> <strong>al</strong>., 1998).Molecular clock dates yield divergence times of m<strong>et</strong>azoanclades significantly earlier than the Cambrian explosion. Theoldest dates are implied by Bromham <strong>et</strong> <strong>al</strong>. (1998); their datacontain outlying points but tend to suggest a protostomedeuterostomesplit before 1,500 Ma. Wray <strong>et</strong> <strong>al</strong>. (1996) applieda molecular clock to the evolutionary rates of six protein-codinggenes and the 18S rRNA gene. Their techniques yielded agesof about 1,200 Ma for the protostome-deuterostome split and1,000 Ma for the echinoderm-chordate divergence. Theseestimates have been criticised on sever<strong>al</strong> grounds (e. g. Nikoh<strong>et</strong> <strong>al</strong>., 1997; Ay<strong>al</strong>a <strong>et</strong> <strong>al</strong>., 1998). Nikoh <strong>et</strong> <strong>al</strong>. (1997) used twomolecules believed to be reasonably clock-like and foundconsiderably younger ages for the branching of sponges fromother m<strong>et</strong>azoans (940 Ma), and for the ceph<strong>al</strong>ochordatevertebratesplit (near 700 Ma, with the protostomedeuterostomesplit occurring shortly before). Ay<strong>al</strong>a <strong>et</strong> <strong>al</strong>. (1998)examined 18 protein-coding loci among a number of lineages,discarding data that did not display clock-like behavior. The ageof the protostome-deuterostome divergence was estimated atabout 670 Ma and of the echinoderm-chordate divergence atabout 600 Ma. Clearly, the accuracy of molecular clocks is stillproblematic<strong>al</strong>, at least for phylum divergences, for the estimatesvary by some 800 million years depending on the techniques ormolecules used.Two gener<strong>al</strong> issues are fundament<strong>al</strong> to the interpr<strong>et</strong>ation ofmolecular clock dates. First, even accurate clocks cannotpinpoint the origin of body plans or other events in theevolution of development; they can provide only maximumestimates. At the time of a molecular divergence, the newlyseparated lineages are represented by sister species withidentic<strong>al</strong> body plans; the species differences will not be relatedto the larger evolutionary transformations of interest here(<strong>V<strong>al</strong>entine</strong> <strong>et</strong> <strong>al</strong>., 1996, Erwin <strong>et</strong> <strong>al</strong>., 1997; <strong>V<strong>al</strong>entine</strong> andHamilton, 1997). The molecular clock has begun ticking, in itsirregular fashion, but millions or tens of millions of years maypass before the accumulation of the derived features thatcharacterize the descendant body plans. Conversely, the fossilrecord tracks those novel morphologic<strong>al</strong> features, or even theirfunctions, and provides minimum estimates on their origins,but is silent on the actu<strong>al</strong> nodes indicated by the moleculardivergences. Therefore, substitution rates within moleculeswill appear high when tied to the appearances of body plans inthe fossil record, but low when tied to the nodes of lineagedivergences. Thus, even if the older molecular clock dates forthe divergence of anim<strong>al</strong> phyla were verified, it would in noway diminish the remarkable morphologic<strong>al</strong> evolutionrecorded during the Early Cambrian. Such early dates would,however, indicate a deep decoupling of the branching of majorclades from the acquisition of body plans.A second issue involves dating Neoproterozoic nodes by amolecular clock c<strong>al</strong>ibrated in the Phanerozoic. The extensivemorphologic<strong>al</strong> evolution associated with the Cambrianexplosion may have been accompanied by enhanced rates ofsubstitution, which would cause their divergences to appear tobe earlier than they were, when c<strong>al</strong>ibrated by a Phanerozoicclock. Such bursts of increased substitution have <strong>al</strong>ready beendocumented within 18S rRNA genes for various elements ofm<strong>et</strong>azoan body plans (Cav<strong>al</strong>ier-Smith <strong>et</strong> <strong>al</strong>., 1996) and for thebas<strong>al</strong> radiation of Dipteran clades (Friedrich and Tautz, 1997),though they may be less likely for protein-coding genes. Wheninterpr<strong>et</strong>ations of rates involve extrapolations beyondc<strong>al</strong>ibration points, adequate rate testing becomes cruci<strong>al</strong>.Optim<strong>al</strong>ly, tests should be based on the clades under study andshould involve outgroup references to close phylogen<strong>et</strong>icneighbors. However, it is not clear that molecular clock datescan ever be applied reliably to such geologic<strong>al</strong>ly remote eventsas Neoproterozoic branchings within the M<strong>et</strong>azoa.


Perspectives on the Cambrian explosion857ANCESTRAL BODY PLANS OF THE CAMBRIANFAUNASome authors have suggested that <strong>al</strong>l of the body plans thatappear during the Cambrian explosion first evolved as minute,interstiti<strong>al</strong> or planktonic forms well before their appearance inthe fossil record (e.g. Fortey <strong>et</strong> <strong>al</strong>., 1996; Vermeij, 1996;Cooper and Fortey, 1998). The body plans of explosion taxaare, however, gener<strong>al</strong>ly unsuited for interstiti<strong>al</strong> life unlesssignificantly modified. Among macrofaun<strong>al</strong> lineages that havebeen miniaturized, many body plan features have becomereduced or obsol<strong>et</strong>e, because they are encumberances or aresimply not needed (Swedmark, 1964; Higgins and Thiel,1988). As for planktonic progenitors, such features as thearthropod limb, the annelid parapodium and the molluscan footare not adaptations for minute organisms in the pelagic re<strong>al</strong>m,but clearly evolved for life in benthic environments. Such adultfeatures persist in modified guises in many clades that havesubsequently invaded the pelagic re<strong>al</strong>m. The body plans of <strong>al</strong>lof the major explosion phyla except the chordates are adaptedfor life within the macrobenthic re<strong>al</strong>m, where they first appearduring the Cambrian.One propos<strong>al</strong> that sm<strong>al</strong>l-bodied phyla preceded the largerbenthic bilaterians has been suggested on the basis of adevelopment<strong>al</strong> scenario. In a number of bilaterian phyla, manyelements of adult bodies develop from cells s<strong>et</strong> aside frominvolvement in the larv<strong>al</strong> body, such as imagin<strong>al</strong> disks inarthropods. S<strong>et</strong>-aside cells are arguably homologous amongsome phyla, leading to the hypothesis that the commonancestors of these phyla had body plans similar to an ancestorof their larvae, and the more complex present phyla aros<strong>et</strong>hrough the evolution of specifications for adult body planswithin s<strong>et</strong>-aside cells (Davidson <strong>et</strong> <strong>al</strong>., 1995; P<strong>et</strong>erson <strong>et</strong> <strong>al</strong>.,1997). The body plans of the minute ancestors would resembl<strong>et</strong>hose of minute acoelomates and pseudocoelomates. Thehypothesized body-size increases are consistent with theCambrian fossil size record, but the scenario is not consistentwith present phylogenies, which indicate that minutepseudocoelomate and acoelomate phyla arose after thedivergence of protostomes and deuterostomes and probablyafter that of ecdysozoans and lophotrochozoans. If living phylain those different <strong>al</strong>liances have descended from minute forms,the rise of their body plans would be independent and thehomology of s<strong>et</strong>-aside cells evolved in a number ofindependent lineages is brought into question.SUMMARY AND PROSPECTSIn sum, the fossil record: (1) indicates that m<strong>et</strong>azoans certainlyoriginated significantly earlier than 570 Ma and probably earlierthan 600 Ma, but is otherwise silent on this point, (2) suggeststhat minute bilaterians were present by at least 565 Ma andprobably earlier, (3) indicates that larger bilaterians werepresent by 543 Ma, and (4) suggests that a number of the bodyplans that today characterize major taxa first appear during or‘shortly’ before the interv<strong>al</strong> from about 530 to 520 Ma, whenthe range of activities of benthic organisms increased markedly.Beyond this information, interpr<strong>et</strong>ations of the events in earlym<strong>et</strong>azoan history are based on the topology of the phylogen<strong>et</strong>ictree, the pathways of morphologic<strong>al</strong> change implied by thefossils and by the constraints imposed by our understanding ofevolutionary processes.While the time of origin of the M<strong>et</strong>azoa is not known, an ageof 700 Ma or less would not conflict with the evidence now athand, though it may have been significantly earlier. Is 170million years long enough for the evolution of the Cambrianfauna from the earliest anim<strong>al</strong>s? Clearly, much of body-planevolution was accomplished by changes in patterns of geneexpression. Many genes that mediate the development ofdisparate phyla are conserved after over h<strong>al</strong>f a billion years ofindependent evolution in lineages that have evolved independentarchitectures. Gene regulatory elements were probably the mostimportant actors in this process. The rapidity of this sort ofevolution has not been form<strong>al</strong>ly ev<strong>al</strong>uated, but the use and reuseof established sign<strong>al</strong>ing pathways (Gonz<strong>al</strong>ez-Crespo andLevine, 1994) and other regulatory cascades (Warren <strong>et</strong> <strong>al</strong>.,1994) seem likely to provide evolutionary shortcuts in theproduction of novel morphologies. We have every reason tobelieve that the pace of evolution as suggested by plausibleinterpr<strong>et</strong>ations of the fossil record could easily be achieved.Understanding the events surrounding the Cambrianexplosion remains a major ch<strong>al</strong>lenge. The stream ofextraordinary fossil discoveries has illuminated new suites ofcharacters for phylogen<strong>et</strong>ic an<strong>al</strong>ysis and has generated newinsights into the breadth of the morphologic innovationsassociated with the explosion, which are being ev<strong>al</strong>uated bynewly developed quantitative techniques. As increasingnumbers of precise dates become available for the fossiliferoushorizons, the rates of morphologic change can be d<strong>et</strong>erminedwith greater rigor (Bowring and Erwin 1998). The advent ofdurable skel<strong>et</strong>ons is particularly notable, both in enhancing thevisibility of the explosion and because the origins of so manyclasses of marine invertebrates, including most withinMollusca, Echinodermata, Brachiopoda and Arthropoda,involve the exploration of design opportunities opened by thepossession of hard skel<strong>et</strong>ons (see Bambach, 1985; <strong>V<strong>al</strong>entine</strong> andErwin, 1987). However, non-skel<strong>et</strong><strong>al</strong> evidence <strong>al</strong>so attests to there<strong>al</strong>ity of the Cambrian explosion; the ons<strong>et</strong> and the breadth ofthis event is recorded by numerous soft-bodied forms, by tracefossils, and even by the microplankton (Vid<strong>al</strong>, 1997).Sever<strong>al</strong> factors are prerequisites for the explosion, necessarybut not sufficient. Owing to the new m<strong>et</strong>azoan phylogeny it ispossible to reconstruct minimum Hox gene arrays, and theysuggest that much of the basic gene-regulatory machinery thatis required to s<strong>et</strong> up m<strong>et</strong>azoan body plans was in placesignificantly before the explosion (<strong>V<strong>al</strong>entine</strong> <strong>et</strong> <strong>al</strong>., 1996).Oxygen concentration must have risen to levels at which activemacrobenthic anim<strong>al</strong>s can be supported; however, appropriatelevels may have been reached over 100 million years befor<strong>et</strong>he explosion (Knoll, 1996). Climate fluctuations have <strong>al</strong>sobeen implicated (Hoffman <strong>et</strong> <strong>al</strong>., 1998), <strong>al</strong>though direct caus<strong>al</strong>links are difficult to specify and even harder to test. The effectsof comp<strong>et</strong>ition, predation, and other ecologic<strong>al</strong> interactionslaunched by the evolution of new sorts of organisms, aresimilarly difficult to ev<strong>al</strong>uate and remain important unresolvedquestions.Among the chief ch<strong>al</strong>lenges of the Cambrian explosion ar<strong>et</strong>o understand the evolution of the development<strong>al</strong> systemsrequired to produce the novel and disparate body plans, to findthe reason(s) that so many different lineages producednovelties in such concert, and to understand why the explosion


858J. W. <strong>V<strong>al</strong>entine</strong>, D. Jablonski and D. H. Erwinwas such a brief episode rather than continuing as an ongoingflood of major novelties. Surely one of the pressing questionsin evolutionary development<strong>al</strong> biology is under whatcircumstances highly conserved control sequences are <strong>al</strong>sofunction<strong>al</strong>ly conserved (Shubin <strong>et</strong> <strong>al</strong>., 1997). Comparativeanatomy of extant organisms is not sufficient on its own to inferthe morphology of extinct body plans. The new phylogen<strong>et</strong>ictrees, and fresh perspectives on p<strong>al</strong>eontologic<strong>al</strong> evidence, areproviding a much-needed basis for establishing patterns ofconservation and innovation in development<strong>al</strong> regulationacross body plans, and for more rigorously constraining thepossible ancestr<strong>al</strong> forms. Understanding the differences andsimilarities in how development<strong>al</strong> systems, inherited from acommon ancestor, were redeployed in the three great branchesof bilaterian evolution, each representing an independentexperiment in body plan diversification, will be a major step inunderstanding the interplay of development and evolution.We thank Mary Droser, University of C<strong>al</strong>ifornia, Riverside, andPaul D. Taylor, Natur<strong>al</strong> History Museum, London, for unpublishedobservations; Guy Narbonne, Queen’s University and Shuhui Xiao,Harvard University, for generously contributing photographicmateri<strong>al</strong>s; Michael Levine, University of C<strong>al</strong>ifornia, Berkeley, and D.T. J. 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