Laboratory-based evaluation of the colorimetric VITEK-2 Compact ...
Laboratory-based evaluation of the colorimetric VITEK-2 Compact ...
Laboratory-based evaluation of the colorimetric VITEK-2 Compact ...
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Antimicrobial Susceptibility Studies<br />
<strong>Laboratory</strong>-<strong>based</strong> <strong>evaluation</strong> <strong>of</strong> <strong>the</strong> <strong>colorimetric</strong> <strong>VITEK</strong>-2 <strong>Compact</strong><br />
system for species identification and <strong>of</strong> <strong>the</strong> Advanced Expert System<br />
for detection <strong>of</strong> antimicrobial resistances:<br />
<strong>VITEK</strong>-2 <strong>Compact</strong> system identification and<br />
antimicrobial susceptibility testing<br />
Isamu Nakasone a, 4, Tohru Kinjo a , Nobuhisa Yamane b , Kyoko Kisanuki a , Chika M. Shiohira b<br />
Abstract<br />
a<br />
Clinical Laboratories, University Hospital <strong>of</strong> <strong>the</strong> Ryukyus, University <strong>of</strong> <strong>the</strong> Ryukyus, Nishihara-Nakagami, Okinawa 903-0215, Japan<br />
b<br />
Department <strong>of</strong> <strong>Laboratory</strong> Medicine, Graduate School and Faculty <strong>of</strong> Medicine, University <strong>of</strong> <strong>the</strong> Ryukyus, Okinawa 903-0215, Japan<br />
Received 4 October 2006; accepted 8 December 2006<br />
The newly redesigned <strong>colorimetric</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system with updated Advanced Expert System (AES) (bioMerieux, Marcy<br />
l’Etoile, France) was evaluated for its accuracy and rapidity to identify clinical isolates and to detect several antimicrobial resistances.<br />
Overall, <strong>the</strong> <strong>VITEK</strong>-2 gave 95.8% <strong>of</strong> compatibility with <strong>the</strong> reference API strips (bioMerieux) in <strong>the</strong> identifications (IDs) <strong>of</strong> Gram-positive<br />
cocci (GPC), Gram-negative rods (GNR), and yeasts. The accuracy was finally estimated to 98.3% through additional confirmatory tests.<br />
Also, N90% <strong>of</strong> IDs <strong>of</strong> GPC and GNR were obtained within 7 h <strong>of</strong> incubations. The <strong>VITEK</strong> AES correctly detected 97.7% <strong>of</strong> antimicrobial<br />
resistances, including extended-spectrum h-lactamases, oxacillin and inducible clindamycin resistances in staphylococci, vancomycin<br />
resistance in enterococci, and penicillin and erythromycin resistances in Streptococcus pneumoniae. The most resistant isolates were<br />
identified within 12 h <strong>of</strong> incubations. In conclusion, <strong>the</strong> new <strong>colorimetric</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system with AES greatly improved its accuracy<br />
in species ID and detection <strong>of</strong> antimicrobial resistances, and it will be highly acceptable to clinical microbiology laboratory function.<br />
D 2007 Elsevier Inc. All rights reserved.<br />
Keywords: <strong>VITEK</strong>-2 <strong>Compact</strong> system; Advanced Expert System; Antimicrobial resistance<br />
1. Introduction<br />
A series <strong>of</strong> <strong>the</strong> <strong>VITEK</strong> systems (bioMerieux, Marcy<br />
l’Etoile, France) has been a fully automated instrument that<br />
provides species identification (ID) and antimicrobial<br />
susceptibility testing (AST) for a variety <strong>of</strong> clinical isolates,<br />
and are presently used in many clinical microbiology<br />
laboratories worldwide. During <strong>the</strong> past 3 decades, several<br />
revisions have been introduced to <strong>the</strong> system, resulting in a<br />
Presented in part at <strong>the</strong> 106th General Meeting <strong>of</strong> American Society for<br />
Microbiology, Orlando, FL, May 2006, Abstract Current #C-008.<br />
4 Corresponding author. Tel.: +81-98-895-3331x3332; fax: +81-98-<br />
895-463.<br />
E-mail address: isamu@jim.u-ryukyu.ac.jp (I. Nakasone).<br />
0732-8893/$ – see front matter D 2007 Elsevier Inc. All rights reserved.<br />
doi:10.1016/j.diagmicrobio.2006.12.008<br />
Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198<br />
www.elsevier.com/locate/diagmicrobio<br />
stepwise improvement <strong>of</strong> <strong>the</strong> system performance. Recently,<br />
extensive revisions, including reintroduction <strong>of</strong> <strong>colorimetric</strong><br />
reading in lieu <strong>of</strong> fluorescence technology, and addition <strong>of</strong><br />
several biochemical substrates and taxa covered by <strong>the</strong><br />
broadened database comparable with <strong>the</strong> well-established<br />
API series (bioMerieux) are created (Funke and Funke-<br />
Kissling, 2004; Funke and Funke-Kissling, 2005; Aubertine<br />
et al., 2006). The efforts have been focused upon <strong>the</strong><br />
accurate ID, in particular, to solve its inherent weakness in<br />
<strong>the</strong> IDs <strong>of</strong> glucose-nonfermentative Gram-negative rods<br />
(GNR) and members <strong>of</strong> <strong>the</strong> family Streptococcaceae<br />
(Joyanes et al., 2001; Gavin et al., 2002). In this communication,<br />
we describe <strong>the</strong> results to evaluate <strong>the</strong> accuracy <strong>of</strong><br />
ID by <strong>the</strong> respective <strong>VITEK</strong> test cards on <strong>the</strong> <strong>VITEK</strong>-2<br />
<strong>Compact</strong> system and to detect several antimicrobial
192<br />
Table 1<br />
Accuracy in species ID by <strong>the</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system<br />
Species ID<br />
by API strip<br />
(no. <strong>of</strong> isolates<br />
tested)<br />
No. <strong>of</strong><br />
tests<br />
agreed<br />
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198<br />
Discrepant<br />
ID by <strong>the</strong><br />
<strong>VITEK</strong>-2<br />
(no. <strong>of</strong> cases)<br />
Final ID<br />
<strong>VITEK</strong>-2<br />
was correct<br />
or incorrect<br />
(no. <strong>of</strong> cases)<br />
S. aureus (21) 19 S. caprae (2) a<br />
S. caprae (2) correct b<br />
S. capitis (14) 14<br />
S. caprae (7) 7<br />
Staphylococcus<br />
cohnii (2)<br />
2<br />
Staphylococcus<br />
epidermidis (18)<br />
18<br />
Staphylococcus<br />
haemolyticus (9)<br />
9<br />
Staphylococcus<br />
hominis (1)<br />
1<br />
Staphylococcus<br />
lugdunensis (10)<br />
10<br />
Staphylococcus<br />
saprophyticus (1)<br />
1<br />
Staphylococcus<br />
schleiferi (3)<br />
3<br />
Staphylococcus<br />
sciuri (2)<br />
2<br />
S. simulans (1) 0 S. capitis (1) S. capitis (1) correct<br />
Staphylococcus<br />
warneri (1)<br />
1<br />
Enterococcus avium (8) 8<br />
E. casseliflavus (8) 8<br />
Enterococcus durans (1) 1<br />
E. faecalis (14) 14<br />
E. faecium (10) 10<br />
E. gallinarum (13) 12 E. faecium (1) E. faecium (1) correct<br />
Streptococcus 15 S. dysgalactiae (1) S. dysgalactiae<br />
agalactiae (16)<br />
(1) correct<br />
Streptococcus 14 S. parasanguis (1) S. parasanguis<br />
anginosus (15)<br />
(1) correct<br />
S. constellatus (4) 3 Streptococcus S. constellatus<br />
gordonii (1) (1) incorrect<br />
S. dysgalactiae (5) 5<br />
Streptococcus 20 Streptococcus S. oralis (1) incorrect<br />
mitis/oralis (21)<br />
sanguis (1)<br />
Streptococcus<br />
mutans (1)<br />
1<br />
S. parasanguis (2) 2<br />
S. pneumoniae (11) 11<br />
Streptococcus<br />
pyogenes (11)<br />
11<br />
Streptococcus<br />
salivarius (3)<br />
3<br />
S. sanguis (2) 1 S. parasanguis (1) S. parasanguis<br />
(1) correct<br />
Citrobacter freundii (7) 7<br />
Citrobacter koseri (5) 5<br />
Enterobacter<br />
aerogenes (5)<br />
5<br />
Enterobacter<br />
cloacae (6)<br />
6<br />
E. coli (12) 12<br />
Klebsiella<br />
oxytoca (5)<br />
5<br />
K. pneumoniae (7) 7<br />
Morganella<br />
morganii (5)<br />
5<br />
Table 1 (continued)<br />
Species ID<br />
by API strip<br />
(no. <strong>of</strong> isolates<br />
tested)<br />
No. <strong>of</strong><br />
tests<br />
agreed<br />
Discrepant<br />
ID by <strong>the</strong><br />
<strong>VITEK</strong>-2<br />
(no. <strong>of</strong> cases)<br />
Final ID<br />
<strong>VITEK</strong>-2<br />
was correct<br />
or incorrect<br />
(no. <strong>of</strong> cases)<br />
Proteus<br />
mirabilis (5)<br />
5<br />
Proteus<br />
vulgaris (5)<br />
5<br />
Providencia<br />
rettgeri (1)<br />
1<br />
Providencia<br />
stuartii (5)<br />
5<br />
Salmonella<br />
spp. (13)<br />
13<br />
Serratia<br />
marcescens (12)<br />
12<br />
Acinetobacter<br />
baumannii (11)<br />
11<br />
Acinetobacter<br />
junii (4)<br />
4<br />
A. lw<strong>of</strong>fii (2) 0 Alcaligenes A. lw<strong>of</strong>fii<br />
faecalis (2) (2) incorrect<br />
Aeromonas<br />
hydrophila (8)<br />
8<br />
Aeromonas<br />
sobria (2)<br />
2<br />
A. faecalis (5) 5<br />
Alcaligenes<br />
xylosoxidans (16)<br />
16<br />
Burkholderia<br />
cepacia (2)<br />
2<br />
Chryseobacterium<br />
indologenes (4)<br />
4<br />
Chryseobacterium<br />
meningosepticum (4)<br />
4<br />
Ochrobactrum 2 R. radiobacter (2) R. radiobacter<br />
anthropi (4)<br />
(2) correct<br />
P. aeruginosa (15) 15<br />
P. fluorescens (2) 0 P. aeruginosa (1), P. aeruginosa<br />
A. baumannii (1) (1) correct,<br />
P. fluorescens<br />
(1) incorrect<br />
Pseudomonas<br />
1 P. aeruginosa (1), P. aeruginosa<br />
putida (4)<br />
P. fluorescens (2) (1) correct,<br />
P. fluorescens<br />
(2) incorrect<br />
P. stutzeri (1) 0 S. paucimobilis (1) P. stutzeri<br />
(1) incorrect<br />
R. radiobacter (3) 3<br />
Sphingobacterium 0 S. paucimobilis (1) S. paucimobilis<br />
multivorum (1)<br />
(1) correct<br />
Candida albicans (24) 24<br />
Candida glabrata (9) 9<br />
Candida intermedia (1) 1<br />
Candida krusei (1) 1<br />
Candida<br />
parapsilosis (15)<br />
15<br />
Candida tropicalis (6) 6<br />
Trichosporon asahii (2) 2<br />
a Indicates <strong>the</strong> species identification (no. <strong>of</strong> cases) by <strong>the</strong> <strong>VITEK</strong>-2 but<br />
disagreed with <strong>the</strong> reference API identification.<br />
b Indicates <strong>the</strong> final identification with additional phenotypic testing<br />
and whe<strong>the</strong>r <strong>the</strong> ID results by <strong>the</strong> <strong>VITEK</strong>-2 was correct or incorrect.
esistances by <strong>the</strong> updated <strong>VITEK</strong> Advanced Expert System<br />
(AES) (Sanders et al., 2000; Barry et al., 2003).<br />
2. Materials and methods<br />
2.1. Isolates and testing by Vitek-2 <strong>Compact</strong> system<br />
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198 193<br />
A total <strong>of</strong> 474 clinical isolates comprising 235 <strong>of</strong> Grampositive<br />
cocci (GPC), 181 <strong>of</strong> GNR, and 58 yeasts were<br />
included in <strong>the</strong> ID study. In addition, a total <strong>of</strong> 321 clinical<br />
isolates including 96 strains <strong>of</strong> Enterobacteriaceae, 107 <strong>of</strong><br />
staphylococci, 61 <strong>of</strong> enterococci, and 57 <strong>of</strong> S. pneumoniae<br />
were used for <strong>the</strong> detection <strong>of</strong> specific antimicrobial<br />
resistances. All <strong>the</strong> isolates were <strong>the</strong> collection <strong>of</strong> clinical<br />
isolates stored 80 8C and were subcultured twice onto <strong>the</strong><br />
Columbia agar plates supplemented with 5% sheep blood<br />
before testing. The inoculum suspension was prepared in<br />
0.45% saline, giving <strong>the</strong> equivalent <strong>of</strong> a 0.5-McFarland<br />
turbidity. The following respective <strong>VITEK</strong> test cards were<br />
filled with cell suspension according to <strong>the</strong> manufacturer’s<br />
instruction: GP for ID <strong>of</strong> GPC, GN for ID <strong>of</strong> GNR, YE for<br />
ID <strong>of</strong> yeasts, AST-N034 for AST <strong>of</strong> Enterobacteriaceae,<br />
AST-P546 for AST <strong>of</strong> staphylococci and enterococci, and<br />
AST-P518 for AST <strong>of</strong> S. pneumoniae. In this study, <strong>VITEK</strong>-<br />
2 <strong>Compact</strong> system with <strong>the</strong> s<strong>of</strong>tware version V2C 1.01<br />
was used.<br />
2.2. Reference methods<br />
All <strong>the</strong> isolates included in ID study were identified by<br />
<strong>the</strong> respective API test strips as follows: ID 32 STAPH for<br />
staphylococci, RAPID ID 32 STREP for streptococci and<br />
enterococci, RAPID ID 32 E for Enterobacteriaceae, ID<br />
32 GN for glucose-nonfermentative GNR and members <strong>of</strong><br />
<strong>the</strong> genus Aeromonas, and ID 32 C for yeasts. The API test<br />
strips were read by <strong>the</strong> autoreader, mini API (bioMerieux),<br />
and its database version 1.3.1. was used. When <strong>the</strong> <strong>VITEK</strong>-<br />
2 gave <strong>the</strong> discrepant ID result compared with <strong>the</strong> respective<br />
API strip, additional phenotypic tests were performed<br />
according to <strong>the</strong> algorithm established (Ru<strong>of</strong>f, 2003;<br />
Schreckenberger and Wong; 2003). The flowcharts, <strong>based</strong><br />
on Gram stain characteristics and a selected number <strong>of</strong><br />
additional easily performed enzymatic, biochemical, and<br />
biologic tests, determined which ID results were correct.<br />
The specific antimicrobial resistances evaluated include<br />
extended-spectrum h-lactamase (ESBL)–producing isolates<br />
<strong>of</strong> Escherichia coli and Klebsiella pneumoniae, oxacillin<br />
resistance and inducible clindamycin resistance among<br />
staphylococci, vancomycin resistance among enterococci,<br />
and penicillin resistance and erythromycin resistance among<br />
S. pneumoniae. As <strong>the</strong> reference, ESBL-producing isolates<br />
were first screened according to <strong>the</strong> initial disk screen test<br />
described (Clinical and <strong>Laboratory</strong> Standards Institute<br />
[CLSI], 2005, formerly National Committee for Clinical<br />
<strong>Laboratory</strong> Standards), <strong>the</strong>n confirmed and classified on <strong>the</strong><br />
basis <strong>of</strong> DNA amplification <strong>of</strong> <strong>the</strong> respective target genes by<br />
polymerase chain reaction (PCR) and agarose gel electro-<br />
phoresis <strong>of</strong> <strong>the</strong> PCR products. Detection <strong>of</strong> <strong>the</strong> bla gene<br />
sequences coding <strong>the</strong> TEM, SHV, and CTX-M enzymes were<br />
performed as previously described using <strong>the</strong> specific primer<br />
pairs (Yagi et al., 2000). For oxacillin-resistant staphylococci,<br />
detection <strong>of</strong> penicillin-binding protein 2a (PBP2a) by <strong>the</strong><br />
latex agglutination, MRSA-Screen test (Denka-Seiken,<br />
Tokyo, Japan), was used (Cavassini et al., 1999; Horstkotte<br />
et al., 2001). Inducible clindamycin resistance was first<br />
phenotypically determined by an erythromycin (15-Ag disk)–<br />
clindamycin (2-Ag disk) double-disk test (D-zone test) and<br />
<strong>the</strong>n was genetically confirmed for <strong>the</strong> presence <strong>of</strong> specific<br />
genes coding ermA and ermC by PCR as described (Khan<br />
et al., 1999; Volokhov et al., 2003). Vancomycin resistances<br />
among enterococci were determined by significant growth<br />
on vancomycin resistance enterococci screening agar plates<br />
(CLSI, 2003) and by PCR to detect vanA and vanB genes<br />
(Woodford et al., 1995). Penicillin resistance and erythromycin<br />
resistance <strong>of</strong> S. pneumoniae were determined by PCR<br />
for <strong>the</strong> respective genes <strong>of</strong> pbp1a, pbp2x, pbp2b, mefA, and<br />
ermB using <strong>the</strong> commercially available test reagents,<br />
penicillin-resistant S. pneumoniae gene detection version<br />
2.0 (Wakunaga Pharmaceutical, Hiroshima, Japan) (Ubukata<br />
et al., 1996; Ubukata et al., 2003).<br />
3. Results<br />
3.1. ID <strong>of</strong> clinical isolates by <strong>the</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system<br />
Table 1 shows <strong>the</strong> results when <strong>the</strong> <strong>VITEK</strong>-2 and <strong>the</strong><br />
respective API strips comparatively identified a total <strong>of</strong><br />
474 clinical isolates. Of 474 isolates tested, 454 (95.8%)<br />
were comparable IDs, resulting in 20 discrepant results<br />
comprising 9 <strong>of</strong> GPC and 11 <strong>of</strong> GNR. For <strong>the</strong> isolates<br />
belonging to Enterobacteriaceae and yeasts, all <strong>the</strong> ID<br />
results were completely identical to each o<strong>the</strong>r. For <strong>the</strong><br />
Fig. 1. Cumulative distribution <strong>of</strong> time to require for final ID by <strong>the</strong><br />
<strong>VITEK</strong>-2 <strong>Compact</strong> system. ! – ! = staphylococci; E–E = enterococci;<br />
z–z = streptococci; o–o = Enterobacteriaceae; 5–5 = glucosenonfermentative<br />
GNR. The isolates <strong>of</strong> Aeromonas spp. were included in<br />
glucose-nonfermentative GNR.
194<br />
Table 2<br />
Accuracy to detect specific resistant isolates by <strong>the</strong> <strong>VITEK</strong> AES<br />
Antimicrobial resistance and<br />
clinical isolates tested<br />
Nos. <strong>of</strong><br />
isolates<br />
tested<br />
Interpretation by <strong>VITEK</strong> AES<br />
Enterobacteriaceae Staphylococci<br />
ESBL Non-ESBL MLSB<br />
inducible<br />
MLSB<br />
inducible<br />
negative<br />
Modification<br />
<strong>of</strong> PBP<br />
ESBLs<br />
E. coli (TEM type) 21 20 1<br />
E. coli (SHV type) 2 2<br />
E. coli (CTX-M type) 3 3<br />
K. pneumoniae (TEM type) 21 21<br />
K. pneumoniae (SHV type) 1 1<br />
K. pneumoniae<br />
(TEM and SHV type)<br />
Non-ESBL<br />
3 3<br />
E. coli 24 24<br />
K. pneumoniae<br />
D-zone test–positive and ermA<br />
and/or ermC-positive<br />
staphylococci<br />
21 21<br />
S. aureus 33 32 1<br />
S. epidermidis 8 8<br />
S. haemolyticus 3 3<br />
S. hominis 2 2<br />
D-zone test–negative and ermA- and<br />
ermC-negative S. aureus<br />
Oxacillin-resistant and<br />
PBP2a-positive staphylococci<br />
16 16<br />
S. aureus 27 27<br />
S. capitis 4 4<br />
S. epidermidis 30 30<br />
S. haemolyticus 3 3<br />
S. hominis 2 2<br />
S. lugdunensis 1 1<br />
S. simulans 1 1<br />
S. warneri<br />
Oxacillin-susceptible and<br />
PBP2a-negative<br />
staphylococci<br />
1 1<br />
S. aureus 22 22<br />
S. capitis 8 8<br />
S. hominis 2 2<br />
S. lugdunensis 5 5<br />
S. warneri 1 1<br />
Antimicrobial<br />
resistance and<br />
clinical isolates<br />
tested<br />
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198<br />
Nos. <strong>of</strong><br />
isolates<br />
tested<br />
Interpretation by <strong>VITEK</strong> AES<br />
Enterococci S. pneumoniae<br />
Vancomycin resistance Modification <strong>of</strong> PBP<br />
VanA like VanB like Wild (VanC) High-level<br />
resistance<br />
vanA-positive enterococci<br />
E. casseliflavus 1 1<br />
E. faecalis 1 1<br />
E. faecium 18 18<br />
E. gallinarum<br />
vanB-positive enterococci<br />
1 1<br />
E. casseliflavus 3 3<br />
E. faecalis 14 14<br />
E. faecium 11 11<br />
E. gallinarum<br />
vanA- and vanB-positive<br />
enterococci<br />
1 1<br />
Low-level<br />
resistance<br />
Nonmodification<br />
<strong>of</strong> PBP<br />
Resistant<br />
(MLSB)<br />
Wild
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198 195<br />
Table 2 (continued)<br />
Antimicrobial<br />
Nos. <strong>of</strong> Interpretation by <strong>VITEK</strong> AES<br />
resistance and<br />
clinical isolates<br />
tested<br />
isolates<br />
tested<br />
Enterococci<br />
Vancomycin resistance<br />
S. pneumoniae<br />
Modification <strong>of</strong> PBP<br />
VanA like VanB like Wild (VanC) High-level Low-level Resistant Wild<br />
resistance resistance (MLSB)<br />
E. faecium 1 1<br />
E. gallinarum<br />
vanA- and vanB-negative<br />
enterococci<br />
3 3<br />
E. casseliflavus 1 1<br />
E. gallinarum<br />
Penicillin-resistant<br />
mutant<br />
6 6<br />
S. pneumoniae<br />
Penicillin-susceptible, wild<br />
40 28 12<br />
S. pneumoniae<br />
Erythromycin-resistant<br />
mutant<br />
17 2 15<br />
S. pneumoniae<br />
Erythromycin-susceptible,<br />
wild<br />
44 42 2<br />
S. pneumoniae 13 13<br />
discrepant results, additional phenotypic characterizations<br />
were performed and determined, in which ID result was<br />
correct. Of <strong>the</strong> 9 discrepant results for GPC, 7 ID results by<br />
<strong>VITEK</strong>-2 were correct, but <strong>the</strong> API ID 32 STAPH and<br />
RAPID ID 32 STREP resulted in misidentifications. Two<br />
isolates <strong>of</strong> Staphylococcus aureus, which were identified by<br />
ID 32 STAPH, resulted in <strong>the</strong> ID as Staphylococcus caprae<br />
by <strong>VITEK</strong>-2, and <strong>the</strong> IDs <strong>of</strong> <strong>VITEK</strong>-2 consisted <strong>of</strong> negative<br />
coagulase, negative clumping factor, and positive urease<br />
results. Also, one isolate was identified as Staphylococcus<br />
simulans by ID 32 STAPH, but <strong>VITEK</strong>-2 identified it as<br />
Staphylococcus capitis. Additional biochemical testing, acid<br />
from lactose, positive urease, and negative h-galactosidase<br />
supported <strong>the</strong> <strong>VITEK</strong>-2 ID result. One isolate <strong>of</strong> Enterococcus<br />
gallinarum, which was identified by RAPID ID<br />
32 STREP, resulted in Enterococcus faecium by <strong>VITEK</strong>-2,<br />
and nonmotility and not producing yellow pigment simply<br />
supported <strong>the</strong> <strong>VITEK</strong>-2 ID result. There were 5 discrepant<br />
results for streptococci. Of <strong>the</strong>se, 3 results by <strong>VITEK</strong>-2,<br />
1 <strong>of</strong> Streptococcus dysgalactiae and 2 <strong>of</strong> Streptococcus<br />
parasanguis, were regarded as being correct IDs by <strong>the</strong><br />
additional biochemical testing: negative CAMP test and<br />
nonfermentation <strong>of</strong> sorbitol, and positive h-glucosidase and<br />
fermentation <strong>of</strong> trehalose for S. dysgalactiae, and negative<br />
Voges–Proskauer test, and positive h-glucosidase and<br />
h-galactosidase for S. parasanguis. Finally, <strong>the</strong> <strong>VITEK</strong>-2<br />
correctly identified 233 (99.1%) isolates <strong>of</strong> GPC, compared<br />
with 228 (97.0%) isolates by <strong>the</strong> reference API strips, ID 32<br />
STAPH and RAPID ID 32 STREP.<br />
For GNR, a total <strong>of</strong> 11 discrepant results were obtained<br />
by <strong>the</strong> <strong>VITEK</strong>-2, and all <strong>the</strong> discrepant results came from<br />
<strong>the</strong> isolates <strong>of</strong> glucose-nonfermentative bacteria. Of <strong>the</strong>se,<br />
5 ID results by <strong>VITEK</strong>-2 were finally concluded as being<br />
correct: 2 isolates <strong>of</strong> Rhizobium radiobacter with negative<br />
gas production from nitrate, positive nitrate reduction, and<br />
positive O-nitrophenyl-h-d-galactopyranoside; 2 isolates <strong>of</strong><br />
Pseudomonas aeruginosa with significant growth at 428C,<br />
positive hydrolysis <strong>of</strong> acetamide, and gas production from<br />
nitrate; and 1 isolate <strong>of</strong> Sphingomonas paucimobilis with<br />
positive motility, positive urease, and susceptibility to<br />
polymyxin B. However, <strong>the</strong>re remained 6 misidentifications<br />
confirmed, and <strong>the</strong>y were 2 isolates <strong>of</strong> Acinetobacter lw<strong>of</strong>fii,<br />
3 isolates <strong>of</strong> Pseudomonas fluorescens, and 1 isolate <strong>of</strong><br />
Pseudomonas stutzeri. Overall, <strong>the</strong> <strong>VITEK</strong>-2 correctly<br />
identified 175 (96.7%) isolates <strong>of</strong> GNR, compared with<br />
176 (97.2%) isolates by <strong>the</strong> reference API, RAPID ID 32 E<br />
and ID 32 GN.<br />
Fig. 1 indicated <strong>the</strong> cumulative distribution <strong>of</strong> time to<br />
require for final ID by <strong>the</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system for <strong>the</strong><br />
respective bacterial groups. For all <strong>the</strong> groups <strong>of</strong> <strong>the</strong> isolates<br />
tested, N50% <strong>of</strong> ID results were obtained within 4 to 6 h,<br />
and all <strong>the</strong> final ID results were completed after 7- to 10-h<br />
incubation cycles.<br />
3.2. Detection <strong>of</strong> specific antimicrobial resistances by<br />
<strong>the</strong> AES<br />
The interpretation results by <strong>the</strong> <strong>VITEK</strong> AES to detect<br />
specific antimicrobial resistances were summarized in<br />
Table 2. Of 51 ESBL-producing isolates <strong>of</strong> E. coli and<br />
K. pneumoniae, <strong>the</strong> <strong>VITEK</strong> AES correctly identified<br />
50 isolates (98.0%) and missed 1 isolate <strong>of</strong> TEM-type<br />
ESBL-positive E. coli, which was interpreted as an acquired<br />
penicillinase plus cephalosporinase-producing isolate. However,<br />
all <strong>the</strong> ESBL-nonproducing isolates were correctly<br />
interpreted as being non-ESBL isolates, results indicating<br />
98.0% sensitivity and 100% specificity. Also, <strong>the</strong> <strong>VITEK</strong><br />
AES produced highly correlative interpretations to detect<br />
positive D-zone test associated with macrolide, lincosamide,
196<br />
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198<br />
Fig. 2. Cumulative distribution <strong>of</strong> time to detect <strong>the</strong> respective antimicrobial<br />
resistance by <strong>the</strong> <strong>VITEK</strong> AES. ! – ! = ESBL-producing isolate; n–n =<br />
inducible clindamycin-resistant staphylococci positive for D-zone test and<br />
ermA and/or ermC genes; E–E = oxacillin-resistant staphylococci<br />
positive for PBP2a; z–z = vancomycin-resistant enterococci; o–o =<br />
penicillin-resistant S. pneumoniae; 5–5 = erythromycin-resistant<br />
S. pneumoniae.<br />
and type B streptogramin (MLSB) resistance coded by<br />
ermA and/or ermC genes and oxacillin resistance positive<br />
for PBP2a among staphylococci. Of <strong>the</strong> 46 isolates <strong>of</strong><br />
staphylococci positive for D-zone test and also positive for<br />
ermA and/or ermC genes, 45 (97.8%) were correctly<br />
interpreted as bMLSB inducibleQ by <strong>VITEK</strong> AES, whereas<br />
all <strong>the</strong> 16 isolates, which were negative in <strong>the</strong> respective<br />
reference tests, were reported as bMLSB inducible negativeQ.<br />
One remaining isolate positive for both D-zone test<br />
and ermA gene was reported as being constitutively resistant<br />
to macrolide and streptogramin. A total <strong>of</strong> 69 oxacillinresistant<br />
staphylococcal isolates positive for PBP2a and<br />
38 oxacillin-susceptible isolates negative for PBP2a were<br />
tested by <strong>VITEK</strong>-2, <strong>the</strong> AES interpretations giving none <strong>of</strong><br />
discrepant result with <strong>the</strong> reference tests.<br />
Some significant discrepant results by <strong>the</strong> <strong>VITEK</strong> AES<br />
were demonstrated in detecting vancomycin resistance<br />
among enterococci. All <strong>the</strong> 25 isolates positive for vanA<br />
gene, including 4 isolates positive for both vanA and vanB,<br />
were correctly identified as bVanA-likeQ. Also, 25 vanBpositive<br />
isolates <strong>of</strong> Enterococcus faecalis and E. faecium<br />
gave consistent interpretations. However, 3 isolates <strong>of</strong><br />
Enterococcus casseliflavus and 1 <strong>of</strong> E. gallinarum positive<br />
for vanB gene were incorrectly identified as bwild (VanC)Q<br />
by <strong>the</strong> <strong>VITEK</strong> AES. The MICs determined by <strong>the</strong> <strong>VITEK</strong>-2<br />
were 32 Ag/mL (2 strains) and 8.0 Ag/mL (1 strain) for<br />
E. casseliflavus and 32 Ag/mL for E. gallinarum. For<br />
<strong>the</strong> penicillin resistance among S. pneumoniae, all <strong>the</strong><br />
isolates with mutations on penicillin-binding protein genes,<br />
pbp1a, pbp2x, and/or pbp2b, were correctly identified as<br />
bmodification <strong>of</strong> PBPQ with ei<strong>the</strong>r high-level or low-level<br />
resistances. However, 2 <strong>of</strong> 17 wild susceptible isolates were<br />
incorrectly interpreted as low-level resistance with modification<br />
<strong>of</strong> PBP. Also, all <strong>the</strong> 13 wild susceptible isolates <strong>of</strong><br />
S. pneumoniae for <strong>the</strong> erythromycin resistance determinant<br />
genes were correctly identified as bwildQ, but 2 isolates<br />
positive for ermB gene resulted in incorrect interpretations,<br />
bwildQ.<br />
Fig. 2 indicated <strong>the</strong> cumulative distribution <strong>of</strong> time to<br />
detect antimicrobial resistances by <strong>the</strong> <strong>VITEK</strong> AES. More<br />
than 50% <strong>of</strong> all <strong>the</strong> resistant isolates were interpreted within<br />
7 to 9 h <strong>of</strong> incubation cycles. The testing <strong>of</strong> GPC, in general,<br />
required longer incubation period; however, most resistant<br />
isolates, including vancomycin-resistant enterococci and<br />
oxacillin-resistant staphylococci, were correctly determined<br />
within 12 h <strong>of</strong> incubations.<br />
4. Discussion<br />
Overall, <strong>the</strong> <strong>evaluation</strong> results <strong>of</strong> <strong>the</strong> newly redesigned<br />
<strong>colorimetric</strong> <strong>VITEK</strong>-2 ID impressed us by <strong>the</strong> performance<br />
because more than 98% <strong>of</strong> <strong>the</strong> isolates were correctly<br />
identified to <strong>the</strong> species level without any fur<strong>the</strong>r additional<br />
tests. Also, our obtained results indicated that <strong>the</strong> current<br />
<strong>VITEK</strong>-2 has overcome its inherent weakness in IDs <strong>of</strong><br />
streptococci and glucose-nonfermentative GNR. Until<br />
present, API test strips has been long considered as <strong>the</strong><br />
bgold standardQ in ID test (Fortin et al., 2003; Aubertine<br />
et al., 2006), but <strong>the</strong> accuracy <strong>of</strong> <strong>the</strong> <strong>VITEK</strong>-2 was finally<br />
estimated to be 98.3%, compared with 97.5% by <strong>the</strong><br />
respective API test strips. Our obtained results were highly<br />
consistent with a series <strong>of</strong> <strong>evaluation</strong> results recently<br />
published for GPC (Funke and Funke-Kissling, 2005),<br />
GNR (Funke and Funke-Kissling, 2004), and yeast<br />
(Aubertine et al., 2006). When compared with <strong>the</strong> previous<br />
<strong>VITEK</strong> ID <strong>based</strong> on fluorescent technology, <strong>the</strong> current<br />
<strong>VITEK</strong>-2 ID broadened <strong>the</strong> database concerning <strong>the</strong><br />
relativity to reaction tests and taxa identified; <strong>the</strong> expanded<br />
database corresponds to GP containing 43 tests for 115 taxa,<br />
GN containing 47 tests for 159 taxa, and YE containing<br />
46 tests for 53 species and 14 genera. Although our<br />
<strong>evaluation</strong> study did not cover all <strong>the</strong> taxa included in <strong>the</strong><br />
database and very small numbers <strong>of</strong> <strong>the</strong> clinical isolates for<br />
some species were included, it became apparent that <strong>the</strong><br />
extension <strong>of</strong> <strong>the</strong> database led significantly improved ID<br />
accuracy ra<strong>the</strong>r than poorer ID results. However, <strong>the</strong>re are<br />
still several misidentifications in <strong>the</strong> results <strong>of</strong> isolates<br />
belonging to <strong>the</strong> family Streptococcaceae and glucosenonfermentative<br />
GNR: 1 isolate each <strong>of</strong> Streptococcus<br />
constellatus and Streptococcus oralis in GP, 2 isolates <strong>of</strong><br />
A. lw<strong>of</strong>fii, 3<strong>of</strong>P. fluorescens, and 1 <strong>of</strong> P. stutzeri in GN.<br />
Both bacterial groups are taxonomically diverse and are still<br />
problematic in phenotypic ID tests. Gene sequence analysis<br />
<strong>of</strong> 16S ribosomal DNA or RNA demonstrates considerable<br />
heterogeneity, and <strong>the</strong> original classification <strong>of</strong> <strong>the</strong> genera<br />
has undergone extensive revision (Kawamura et al., 1995;<br />
Kersterns et al., 1996). Although <strong>the</strong> current <strong>VITEK</strong>-2 also
has inherent limitations in <strong>the</strong> ID <strong>of</strong> <strong>the</strong> abovementioned<br />
groups, addition <strong>of</strong> biochemical reactions and broadened<br />
database enable us to provide more accurate ID results<br />
comparable with <strong>the</strong> up-to-date taxonomy.<br />
The <strong>VITEK</strong> AES has been created to analyze <strong>the</strong> AST<br />
results using <strong>the</strong> well-established knowledge base <strong>of</strong><br />
approximately 100 species and 20000 ranges <strong>of</strong> MIC to<br />
detect more than 2300 phenotypic antimicrobial resistances.<br />
<strong>VITEK</strong>-2 and AES have been evaluated in several countries<br />
(Sanders et al., 2000; Barry et al., 2003), <strong>the</strong> results<br />
described indicating that <strong>the</strong> AES detected and interpreted<br />
resistance mechanisms appropriately and would provide aids<br />
for <strong>the</strong>rapeutic choice and accurate epidemiologic analysis.<br />
In our <strong>evaluation</strong>, we included 6 clinically important<br />
antimicrobial resistances well characterized by genetic and<br />
phenotypic reference methods. The accuracy <strong>of</strong> AES was<br />
estimated to be 97.7%, and 10 isolates, comprising 1 isolate<br />
each <strong>of</strong> TEM-type ESBL-producing E. coli and inducible<br />
MLSB-resistant S. aureus, 2 isolates each <strong>of</strong> penicillinsusceptible<br />
wild S. pneumoniae and erythromycin-resistant<br />
S. pneumoniae, and 4 isolates <strong>of</strong> VRE, were misidentified.<br />
In particular, all <strong>the</strong> 4 isolates <strong>of</strong> E. casseliflavus and<br />
E. gallinarum positive for vanB gene were interpreted as<br />
wild (VanC). AES uses enterococcal ID and MICs against<br />
vancomycin and teicoplanin to characterize VRE isolates.<br />
The MIC results for <strong>the</strong> above 4 isolates were interpreted to<br />
be resistant to vancomycin and susceptible to teicoplanin<br />
similar to <strong>the</strong> o<strong>the</strong>r vanB-positive E. faecalis and E. faecium.<br />
However, when <strong>the</strong> <strong>VITEK</strong> identifies <strong>the</strong> test isolate as being<br />
E. casseliflavus or E. gallinarum, <strong>the</strong> <strong>VITEK</strong> AES automatically<br />
reports <strong>the</strong> message bwildQ (VanC). Both VanA and<br />
VanB phenotypes are most commonly detected in E. faecalis<br />
and E. faecium but have been found in o<strong>the</strong>r species (Clark<br />
et al., 1993). Also, discrepancy between VanB phenotype<br />
and vanA genotype was recently reported (Song et al., 2006).<br />
Thus, refinements in AES algorithm should be urgent to<br />
improve accuracy to detect a variety <strong>of</strong> VRE phenotypes.<br />
5. Conclusions<br />
I. Nakasone et al. / Diagnostic Microbiology and Infectious Disease 58 (2007) 191–198 197<br />
The <strong>colorimetric</strong> <strong>VITEK</strong>-2 <strong>Compact</strong> system achieved<br />
an excellent performance to provide accurate species ID<br />
results. In <strong>the</strong> <strong>evaluation</strong>, 466 (98.3%) <strong>of</strong> 474 clinical<br />
isolates, including a variety <strong>of</strong> species <strong>of</strong> staphylococci,<br />
enterococci, streptococci, Enterobacteriaceae, glucose-nonfermentative<br />
GNR, and yeast, were correctly identified. Also,<br />
<strong>the</strong> <strong>VITEK</strong> AES provided interpretations comparable with<br />
phenotypic and genotypic characterizations to determine<br />
specific antimicrobial resistances such as ESBL, inducible<br />
MLSB- and oxacillin-resistant staphylococci, VRE, and<br />
penicillin- and erythromycin-resistant S. pneumoniae. Overall,<br />
<strong>the</strong> accuracy to detect antimicrobial resistances evaluated<br />
was estimated to be 431 <strong>of</strong> 440 (98.0%). Although our study<br />
has limitations on <strong>the</strong> taxa and on <strong>the</strong> numbers <strong>of</strong> <strong>the</strong> isolates<br />
included, it can be concluded that <strong>the</strong> current <strong>colorimetric</strong><br />
<strong>VITEK</strong>-2 combined with AES will greatly contribute to<br />
laboratory function in <strong>the</strong> field <strong>of</strong> clinical microbiology.<br />
Acknowledgments<br />
The authors thank Miyako Higa and Fusako Furugen for<br />
<strong>the</strong>ir valuable technical assistance and Yukiko Izumi for her<br />
help in <strong>the</strong> preparation <strong>of</strong> <strong>the</strong> manuscript.<br />
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