Analyse de donnÃ©es GBS - Inra

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Creation du fichier HapMapTagsReadsAligned TagsTags by TaxaSNP/INDELHapMapFiltering
Création d’un fichier HapMap•Création d’un fichier Hapmap à partir des informations des fichiersd’alignement des Tags (TOPM) et du fichier d’assignation des tags parindivis (Taqs by Taxa)rs# alleles chrom pos strand SgSBRIL067:633Y5AAXX:2:C9 SgSBRIL019:633Y5AAXX:2:C3S1_2100 A/G 1 2100 + N N N N N N N R N A NS1_2163 T/C 1 2163 + N N N N N N T C T T NS1_13837S1_14606S1_2061S1_68332S1_68596S1_69309S1_79955S1_79961S1_80584S1_80647S1_81274S1_108834S1_112345S1_115359S1_115362S1_115405S1_115516S1_116694S1_119016T/G 1C/T 1T/A 1C/T 1A/T 1G/A 1T/G 1T/G 1G 1C/T 1T/G 1G/A 1T/G 1C/T 1T/C 1G/A 1T/G 1A/G 1C/T 113837 +14606 +20601 +68332 +68596 +69309 +79955 +79961 +80584 +80647 +81274 +108834 +112345 +115359 +115362 +115405 +115516 +116694 +119016 +N N NN N CT N NN N NA N NN G NN T GN T TN N NN N NN N NN N NN N NN N NN N NG G AN N TN A GN N NNNNNNNTTNNNNNNNNNNNN N NN N TN N NN N NN N NN N NT N TT N TN N NN N NN N TN N NN N KN N TN N NN G GN N TN N GC N NS1_155366 T/C 1 155366 + N T N N N NGTANNATTNCGNTCCGTACNTNNNNNNNNNNNNNGNNNNTNNANNNNNNNNTNNNNNTCNNNNNNGCNNNNTNN
Page 1 and 2: Pipeline d’analyse de donnée GBS
Page 3 and 4: Le projet BFFThe Targets•Thermal
Page 5 and 6: Genotyping by Sequencing (GBS)Echan
Page 7: Pipeline GBS "Discovery "TagsReadsA
Page 10 and 11: Sequence:Trie des readsReads OKAdap
Page 12 and 13: Pipeline GBS "Discovery "TagsReadsA
Page 14 and 15: Reads -> Tags -> Aligned Tags-> SNP
Page 16 and 17: Reads -> Tags -> Aligned Tags-> SNP
Page 18 and 19: Tags by TaxaReadsTagsAligned TagsTa
Page 20 and 21: Reads -> Tags -> Aligned Tags ->SNP
Page 24 and 25: Creation du fichier HapMapTagsReads
Page 26 and 27: Les données manquantesLes données
Page 28 and 29: Protocole GBS Cornell en 48-, 96‐
Page 30 and 31: Protocole GBS Cornell en 48- ,96‐
Page 32 and 33: Protocole GBS Cornell en 48- ,96‐
Page 34 and 35: Vérification des banques GBS- Gel

Analyse de donnÃ©es GBS - Inra

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