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60<br />
Basic <strong>HPLC</strong> troubleshooting<br />
Symptom Possible Cause Solution(s)<br />
Baseline disturbance Positive/negative–Difference in Use mobile phase <strong>for</strong> sample solvent<br />
at void time refractive index of injection solvent<br />
Detector leaks Catastrophic–Failed detector seal Replace seals/gaskets<br />
Drifting baseline Positive direction–Contaminant<br />
buildup/elution<br />
Flush column, cleanup sample, use pure solvents<br />
Negative direction (gradient)–<br />
Absorbance of ”A“ mobile phase solvent<br />
Use non-absorbing or <strong>HPLC</strong>-grade solvent<br />
Positive direction (gradient)–<br />
Absorbance of mobile phase ”B“<br />
Use higher UV wavelength<br />
Positive direction (gradient)–<br />
Absorbance of ”B“ mobile phase solvent<br />
Use non-absorbing or <strong>HPLC</strong>-grade solvents<br />
R<strong>and</strong>om–Temperature changes Insulate column <strong>and</strong> tubing<br />
R<strong>and</strong>om–Temperature changes Thermostat column <strong>and</strong> tubing<br />
Wavy or undulating–Temperature<br />
changes in room<br />
Monitor room temperature <strong>and</strong> control<br />
Ghost peaks Peaks from previous injection Flush column at end of run with strong solvent<br />
Contamination Flush column to remove contaminants<br />
Unknown interferences in samples Sample cleanup or pre-fractionation<br />
lon pair–Upset equilibrium Prepare sample in actual mobile phase to minimize<br />
disturbance<br />
Peptide mapping–Oxidation of TFA Prepare fresh daily; use anti-oxidant<br />
Reversed phase–Contaminated water Check suitability of water by running different<br />
amounts through reversed phase column <strong>and</strong><br />
measure peak height with elution; use <strong>HPLC</strong> grade<br />
Spikes–Bubbles in solvent De-gas solvents<br />
High column Column blockage with irrev. adsorbed Better sample cleanup; use guard column<br />
backpressure sample<br />
Too high mobile phase viscosity Use lower viscosity solvents or higher temperature<br />
Particle size too small Use larger dp packing<br />
Plugged inlet frit Replace end fitting<br />
Plugged inlet frit Reverse solvent flow<br />
Leak Subtle; white powder at fitting–<br />
Loose fitting<br />
Tighten fitting, cut tubing, or replace ferrule<br />
Leak, injection valve Catastrophic–Worn valve rotor Replace rotor in valve<br />
Leak, column or other<br />
fittings<br />
Catastrophic–Loose fittings Tighten or replace fitting<br />
Leak, pump Catastrophic–Pump seal failure Replace pump seal