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MMTSB/CTBP Summer Workshop r(A-H) vs time De Loof et al (1992) JACS © Lennart Nilsson , 2006.
MMTSB/CTBP Summer Workshop Solvent structure Radial distribution functions: g AB N ( r) = " V B AB S ( r, ! r) ( r, ! r) where N AB(r,Δr) is the average number of B sites found in a shell, Δr thick, at distance r from the A sites, V S the volume of this shell, and ρ B the average number density of B sites in the system. <strong>CHARMM</strong> can compute ρ B, or it can be given by user. © Lennart Nilsson , 2006.
Page 1 and 2: MMTSB/CTBP Summer Workshop CHARMM A
Page 3 and 4: MMTSB/CTBP Summer Workshop Basic an
Page 5 and 6: MMTSB/CTBP Summer Workshop Single s
Page 7 and 8: MMTSB/CTBP Summer Workshop Energy e
Page 9 and 10: MMTSB/CTBP Summer Workshop Hydrogen
Page 11 and 12: MMTSB/CTBP Summer Workshop Hydrogen
Page 13 and 14: Finding hydrogen bonds in a single
Page 15 and 16: MMTSB/CTBP Summer Workshop Protein
Page 17 and 18: Snapshots can be anlyzed in a loop
Page 19: Hydrogen bonds from a trajectory co
Page 23 and 24: MMTSB/CTBP Summer Workshop Geometry
Page 25 and 26: MMTSB/CTBP Summer Workshop Water g
Page 27 and 28: Hydration number / 3D histogram MMT
Page 29 and 30: MMTSB/CTBP Summer Workshop MSD calc
Page 31 and 32: MMTSB/CTBP Summer Workshop Clusteri
Page 33 and 34: Clustering with CHARMM, example cor
Page 35 and 36: MMTSB/CTBP Summer Workshop q 1.5 1.
Page 37 and 38: Example time-dependent fluorescence
Page 39 and 40: MMTSB/CTBP Summer Workshop Example
Page 41 and 42: MMTSB/CTBP Summer Workshop www.char

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