08.06.2013 Views

CHARMM Analysis Tools

CHARMM Analysis Tools

CHARMM Analysis Tools

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

MMTSB/CTBP Summer Workshop<br />

Single structure<br />

• Geometry data:<br />

distance, angle, torsion angle, radius of gyration,<br />

least-squares-plane through set of atoms, sugar<br />

conformation (puckering), helix orientation<br />

• Energy data:<br />

energy, interaction_energy, forces, contributions<br />

from each atom, components (SKIPE)<br />

• Composite data:<br />

secondary structure (Kabsch&Sander/DSSP),<br />

hydrogen bonds, RMSD from other structure,<br />

solvent accessible surface area, volume, cavities<br />

© Lennart Nilsson , 2006.

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!