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880 R. de Mesmay et al. / Organic Geochemistry 39 (2008) 879–893<br />

not always easy to perform due to the common co-occurrence<br />

of complex mixtures of analogues difficult to purify<br />

us<strong>in</strong>g HPLC. To date, among the fifty botryococcenes tentatively<br />

identified us<strong>in</strong>g gas chromatography-mass spectrometry<br />

(GC-MS) analysis of lipids of isolated stra<strong>in</strong>s of B.<br />

braunii or oils extracted from natural samples (e.g. Wake<br />

<strong>and</strong> Hillen, 1981; Metzger et al., 1985a,b, 1988; Okada<br />

et al., 1995; Metzger <strong>and</strong> Largeau, 1999 <strong>and</strong> references<br />

there<strong>in</strong>), only twenty structures have been fully characterized<br />

(Okada et al., 1997; Metzger <strong>and</strong> Largeau, 1999 <strong>and</strong> references<br />

there<strong>in</strong>). Likewise, a few botryococcenes <strong>and</strong><br />

botryococcanes of fossil orig<strong>in</strong> have been identified (Huang<br />

<strong>and</strong> Murray, 1995; Huang et al., 1995, 1996; Grice et al.,<br />

1998; Smittenberg et al., 2005). The reduced C34 botryococcane<br />

was first discovered <strong>in</strong> a Sumatran crude oil (Moldowan<br />

<strong>and</strong> Seifert, 1980) <strong>and</strong> then <strong>in</strong> Australian coastal<br />

bitumens (McKirdy et al., 1986). Some C31 <strong>and</strong> C33 botryococcanes<br />

were found <strong>in</strong> Maom<strong>in</strong>g Oil Shale, Ch<strong>in</strong>a (Brassell<br />

et al., 1986) <strong>and</strong> sulfurized cyclobotryococcanes <strong>in</strong> hypersal<strong>in</strong>e<br />

sediments from the Dead Sea Bas<strong>in</strong>, Israel (Grice et al.,<br />

1998); both cyclic <strong>and</strong> acyclic botryococcenes, together<br />

with partially reduced counterparts, were discovered <strong>in</strong><br />

sediments from crater lakes <strong>in</strong> Kenya (Huang et al., 1995,<br />

1996, 1999; Huang <strong>and</strong> Murray, 1995) <strong>and</strong> Ch<strong>in</strong>a (Fuhrmann<br />

et al., 2003) <strong>and</strong> several C34 botryococcenes were<br />

present <strong>in</strong> large amounts <strong>in</strong> recent sediments from a crater<br />

lake <strong>in</strong> Galápagos (Zhang et al., 2007).<br />

The C 30 botryococcene (m; letters <strong>in</strong> bold refer to the<br />

structures <strong>in</strong> the Appendix), the precursor of all botryococcenes<br />

<strong>and</strong> derivatives, is synthesized <strong>in</strong> the chloroplast<br />

via the non-mevalonate pathway (Sato et al., 2003; Okada<br />

et al., 2004). It arises from condensation of two farnesyl<br />

units via presqualene pyrophosphate, which is also a precursor<br />

for squalene. From this <strong>in</strong>termediate, rearrangement<br />

of the cyclopropyl cation (path a, Fig. 1) or r<strong>in</strong>g<br />

open<strong>in</strong>g of the cyclopropyl r<strong>in</strong>g (path b, Fig. 1) <strong>and</strong> subsequent<br />

reaction with NADPH, lead to the formation of squalene<br />

or C 30 botryococcene, respectively (Huang <strong>and</strong><br />

Poulter, 1989; Okada et al., 2004). Higher homologues of<br />

botryococcene <strong>and</strong> squalene are derived from their respective<br />

C30 precursors by successive methylation with S-adenosylmethion<strong>in</strong>e,<br />

as <strong>in</strong>dicated by bold arrows <strong>in</strong> Fig. 1 for<br />

C30 botryococcene (Metzger et al., 1987; Achitouv et al.,<br />

2004). Afterwards, botryococcenes are excreted to the outer<br />

walls, form<strong>in</strong>g a dense oily matrix (Metzger et al., 1987),<br />

whose structural element is a chemically resistant biopolymer,<br />

the algaenan derived from a polyacetal network bear<strong>in</strong>g<br />

polymethylsqualene derivatives (Metzger et al., 2007).<br />

Cyclization of the term<strong>in</strong>al moieties of botryococcenes may<br />

also occur (Metzger et al., 1985b; David et al., 1988; Huang<br />

et al., 1988; Huang <strong>and</strong> Poulter, 1988; Huang et al., 1995,<br />

1996). Accord<strong>in</strong>gly, the same central pattern exhibit<strong>in</strong>g 1)<br />

the quaternary C-10 bear<strong>in</strong>g a methyl <strong>and</strong> the D 26 exomethylene<br />

unsaturation, 2) the trans D 11 double bond<br />

<strong>and</strong> 3) the methyl group at C-13, is present <strong>in</strong> all botryococcenes.<br />

Moreover, while C31–C34 methylated squalenes<br />

are implicated via their diol derivatives <strong>in</strong> the synthesis<br />

of the structural element of the outer walls, the biological<br />

role of botryococcenes is not obvious. However, as their<br />

accumulation (account<strong>in</strong>g generally for 30–40% of the dry<br />

wt; Metzger et Largeau, 1999) ‘‘results <strong>in</strong> the colonies predom<strong>in</strong>at<strong>in</strong>g<br />

<strong>in</strong> the upper regions of the water column,<br />

where little <strong>in</strong>cident radiation is lost to the water mass”<br />

(Wake <strong>and</strong> Hillen, 1980), they may allow occupation of<br />

some ecological niches suitable for the algal growth.<br />

In the course of our study of the lipid biomarkers from a<br />

30 metre sediment core from Lake Masoko, southern Tanzania,<br />

prelim<strong>in</strong>ary analysis of a few samples revealed the<br />

presence of a wide variety of botryococcenes, most of unknown<br />

structure. We report here the structural identification<br />

of three <strong>dicyclic</strong> C 34–C 36 <strong>and</strong> seven monocyclic C 34–C 37<br />

botryococcenes <strong>and</strong> partially reduced counterparts isolated<br />

from a ca. 32,000 year old sediment layer. The possible<br />

<strong>in</strong>fluence of some physicochemical <strong>and</strong> environmental<br />

factors on the distribution <strong>and</strong> abundance of these algal<br />

biomarkers <strong>in</strong> Lake Masoko is currently be<strong>in</strong>g studied on<br />

a core section correspond<strong>in</strong>g to the last 32,000 years (de<br />

Mesmay et al., 2007b).<br />

OP P<br />

b<br />

a<br />

path a path b<br />

+ +<br />

3 7<br />

26<br />

10<br />

11<br />

16 20<br />

Squalene C 30 Botryococcene<br />

Fig. 1. Simplified scheme of squalene <strong>and</strong> C 30 botryococcene biosynthesis from presqualene diphosphate (adapted from Huang <strong>and</strong> Poulter, 1989) <strong>and</strong> sites<br />

of methylation (bold arrows).

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