Programme of FSPM2013, 9 – 14 June 2013

Programme of FSPM2013, 9 – 14 June 2013
Sunday, 9 June 2013
15:00 – 19:00 Registration
19.00 – 21.30 Icebreaker
Monday, 10 June 2013
8:00 – 9:00 Registration
9:00 – 9:10 Opening
Taneli Kolström, Research Director, Finnish Forest Research Institute
9:10 – 10:00 Keynote talk
Functional-structural Modelling with L-systems: Where from and where to
Jim Hanan
10:00 – 10:20 Coffee Break
10:20 – 12:30 Morning session, Chair: Thierry Fourcaud/Pauline Stenberg
1A Modelling plant structure
1. Biomechanics of Bark Patterning in Grasstree
Holly Jennifer Dale, Adam Runions, David Hobill, Przemyslaw Prusinkiewicz
2. Floral phyllotaxis of magnolia in computer simulations - towards understanding
phyllotactic fingerprint
Beata Zagórska-Marek, Marta Fijak
3. Modelling the spatial arrangement of vascular bundles in plants
Fabrizio Carteni, Francesco Giannino, Gianni Boris Pezzatti, Stefano Mazzoleni
4. Estimating the genetic value of F1 apple progenies for irregular bearing during first years
of production
Jean-Baptiste Durand, Baptiste Guitton, Jean Peyhardi, Yan Holtz, Yann Guédon,
Catherine Trottier, Evelyne Costes
1B Reconstructing and observing plant structure
1. A combined method for quantifying 3D root architecture of field-grown maize
Jie Wu, Bo Yang, Yan Guo
2. Semantic Skeletonization for Structural Plant Analysis
Jenny Balfer, Florian Schöler, Volker Steinhage
12:30 – 13:30 Lunch
13:30 – 14:50 First afternoon session, Chair: Pauline Stenberg
1B Reconstructing and observing plant structure… continued
3. PlantScan: a three-dimensional phenotyping platform for capturing the structural
dynamic of plant development and growth
Xavier Sirault, Jurgen Frip, Anthony Paproki, Peter Kuffner, Chuong Nguyen,Rongxin Li,
Helen Daily, Jianming Guo, Robert Furbank
4. Improving branch distribution models in trees using X-ray computed tomography
Emmanuel Duchateau, David Auty, Alexis Achim
5. tLiDAR methodologies can overcome limitations in estimating forest canopy LAI from
conventional hemispherical photograph analyses
Eric Casella, Mat Disney, James Morison, Helen McKay
6. Shape reconstruction of fruit tree from colored 3D point cloud
Shenglian Lu, Xinyu Guo, Chunjiang Zhao, Weiliang Wen, Jianjun Du
14:50 – 15.20 Poster flash talks
Posters: 1A-1…1A-8, 1B-1…1B-15
15:20 – 16:40 Coffee and poster session
Posters: 1A-1…1A-8, 1B-1…1B-15

16:40 – 17:40 Second afternoon session, Chair: Winfried Kurth
1B Reconstructing and observing plant structure …continued
7. Optimal 3D reconstruction of plants canopy from terrestrial laser scanner data by fusion
of the 3D point information and the intensity value
Mathilde Balduzzi, Frédéric Boudon, Christophe Godin
8. Bayes trees and forests: combining precise empirical and theoretical tree models
Mikko Kaasalainen, Pasi Raumonen, Markku Åkerblom, Risto Sievänen, Sanna
Kaasalainen
9. Quantitative assessement of automatic reconstructions of branching systems
Frédéric Boudon, Chakkrit Preuksakarn, Pascal Ferraro, Julien Diener, Eero Nikinmaa,
Christophe Godin
Tuesday, 11 June 2013
8:30 – 9:20 Keynote talk
Interplay between material flows and structural properties in dynamics of tree growth
Teemu Hölttä
9:20 – 12:30 Morning session, Chair: Jan Vos
2A Exchange and transport processes in plants
1. Transpiration from stomata via the leaf boundary layer: a microscale modelling approach
Thijs Defraeye, Pieter Verboven, Jan Carmeliet, Dominique Derome, Bart Nicolai
2. LEAFC3-N: Modeling Effects of Drought Stress on Photosynthesis, Stomatal Conductance
and Transpiration
Jens Bastet, Johannes Müller, Olaf Christen
3. Modelling transport processes in tissues and organs at a mesoscopic scale
Ansgar Bohmann, Juliane Claus, Andrés Chavarría-Krauser
10:20 – 10:50 Coffee Break
12:30 – 13:30 Lunch
4. Spatial and temporal variability of leaf gas exchanges and temperature responses to
drought on apple trees assessed by a 3D turbid medium model
Jérôme Ngao, Boris Adam, Marie Charreyron, Marc Saudreau
5. Dynamic properties of foliage photosynthesis
Edward David Ford, Shawn Behling
6. Revealing the relative importance of photosynthetic limitations in cucumber canopy
Tsu-Wei Chen, Michael Henke, Katrin Kahlen, Pieter de Visser, Gerhard Buck-Sorlin,
Hartmut Stützel
7. Integrating architecture and physiological perspectives in fruit development
Mikolaj Cieslak, Michel Génard, Frédéric Boudon, Valentina Baldazzi, Christophe Godin,
Nadia Bertin
8. Up-scaling salt effects in cucumber: trade-off between photosynthesis and toxic ion
accumulation
Tsu-Wei Chen, Katrin Kahlen, Hartmut Stützel
13:30 – 14:50 First afternoon session, Chair: Yan Guo
2B Distribution of resources and growth in plants
1. Stem diameter variation: endogenous regulation versus environmental dynamics and its
implication for functional modelling
Maurits Willem Vandegehuchte, Adrien Guyot, David Lockington, Kathy Steppe
2. Crop load effects on stem diameter variations in peach evaluated with an integrated
plant and fruit model
Tom De Swaef, Carmen Diana Mellisho, Annelies Baert, Veerle De Schepper, Wenceslao
Conejero, Kathy Steppe
3. Physiological growth model CASSIA predicts carbon allocation and wood formation of
Scots pine
Pauliina Schiestl-Aalto, Liisa Kulmala, Harri Mäkinen, Tuomo Kalliokoski, Annikki Mäkelä
4. Understanding and evaluating some allometric relationships useful for functionalstructural
plant modeling
María Paulina Fernández
14:50 – 15.20 Poster flash talks
Posters: 2A-1…2A-11, 2B-1…2B-11, 3-1…3-5

15:20 – 16:40 Coffee and poster session
Posters: 2A-1…2A-11, 2B-1…2B-11, 3-1…3-5
16:40 – 17:40 Second afternoon session, Chair: Yan Guo
2B Distribution of resources and growth in plants …continued
5. What are the processes driving carbon allocation to stem and fine roots in a mature
coppice of Quercus ilex in the Mediterranean? A data model analysis
Nicolas K. Martin-StPaul, Morine Lempereur, Nicolas Delpierre, Jean-Marc Ourcival,
Hendrik Davi, Francois Christophe, Leadley Paul, Eric Dufrene, Serge Rambal
6. Modelling temperature-modulated internode elongation in greenhouse grown
cucumber canopies
Katrin Kahlen, Tsu-Wei Chen, Jana Zinkernagel, Hartmut Stützel
Wednesday, 12 June 2013
8:30 – 9:20 Keynote talk
Biotic systems as multilevel dynamic information processing systems
Paulien Hogeweg
9:20 – 12:10 Morning session, Chair: Christophe Godin
3 Methods for FSPMs
1. Integrating multiple scale dynamics: Application to Fagus sylvatica under ozone exposure
Yongzhi Ong, Katarína Smoleňová, Michael Henke, Winfried Kurth
2. Simulating the evolution of optimal rooting strategies in shallow soils and extreme
climates
Michael Renton, Pieter Poot
3. AMAPstudio: a 3D Interactive Software Suite for Plants Architecture Modelling
Sébastien Griffon, François de Coligny
10:20 – 10:50 Coffee Break
12:10 – 13:10 Lunch
13:30 –
ca. 23:00
4. Modelling Competition in Crop Populations via Reaction-Diffusion Foliage Dynamics.
With an Outlook on Tree Modelling
Robert Beyer, Paul-Henry Cournède
5. Improving finite element models of roots-soil mechanical interactions
Ming Yang, Pauline Défossez, Thierry Fourcaud
6. Integrative models for analyzing jointly shoot growth and branching patterns
Jean Peyhardi, Evelyne Costes, Yves Caraglio, Pierre-Éric Lauri, Catherine Trottier, Yann
Guédon
7. Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical
models
Anaëlle Dambreville, Pierre Fernique, Christophe Pradal, Pierre-Eric Lauri, Frédéric
Normand, Yann Guédon, Jean-Baptiste Durand
Excursion & Conference dinner
Thursday, 13 June 2013
8:30 – 9:20 Keynote talk
A critical role for root models in feeding 10 10 people
Jonathan Lynch
9:20 – 12:30 Morning session, Chair: Bruno Andrieu
4A Structural development of plants and light environment
1. Integration of root system in a ryegrass perennial model based on self-regulation
Vincent Migault, Didier Combes, Gaëtan Louarn, Loïc Pagès, Abraham Escobar-Gutiérrez
2. Modelling Sugar maple development along its whole ontogeny: modelling hypotheses
and calibration methodology
Taugourdeau O, Delagrange S, de Reffye P, Messier C
3. Characterizing the balance between ontogeny and environmental constraints in forest
tree development using growth phase duration distributions
Yann Guédon, Olivier Taugourdeau, Yves Caraglio, Sylvie Sabatier
10:20 – 10:50 Coffee Break

12:30 – 13:30 Lunch
4. Influence of canopy architecture and parameters of leaf level photosynthesis on dry
matter production in greenhouse cucumber
Dirk Wiechers, Katrin Kahlen, Hartmut Stützel
5. Light signal perception in Arabidopsis rosettes
Jochem B Evers, Ronald Pierik, Alexander A R van der Krol
6. How do variations of architectural parameters affect light partitioning within wheat pea
mixtures? A simulation study based on a virtual plant approach.
Romain Barillot, Christian Fournier, Pierre Huynh, Abraham J Gutiérrez, Didier Combes
7. Influence of the genetic variation of branching during early growth on light interception
efficiency of apple trees: a modelling study with MAppleT
David Da Silva, Liqi Han, Robert Faivre, Evelyne Costes
8. Quantitative characterization of clumping in Scots pine crowns
Pauline Stenberg, Matti Mõttus, Miina Rautiainen, Risto Sievänen
13:30 – 14:50 First afternoon session, Chair: Bruno Andrieu/Ted DeJong
4A Structural development of plants and light environment …continued
9. Towards three-dimensional modeling light capture of crop canopy considering regional
variation of incident radiation
Tongyu Hou, Tao Duan, Zhaoli Xu, Yuntao Ma, Bangyou Zheng, Yuhong Yang, Yan Guo
10. Modeling Seasonal Patterns of Carbohydrate Storage and Mobilization in Peach Trees
David Da Silva, Liangchun Qin, Carolyn Debuse, Theodore DeJong
5 FSPMs for problem solving in vegetation management
1. A generic model of interactions between FSPM, foliar pathogens and microclimate
Guillaume Garin, Christophe Pradal, Bruno Andrieu, Vianney Houlès, Corinne Robert,
Christian Fournier
2. Using 3D virtual plants to evaluate the canopy role in the progression of a splashdispersed
crop disease: a case study based on wheat cultivar mixtures
Christophe Gigot, Claude de Vallavieille-Pope, Marc Leconte,Claude Maumené,
Laurent Huber, Sébastien Saint-Jean
14:50 – 15.20 Poster flash talks
Posters: 4A-1…4A-21, 4B-1…4B-7, 5-1…5-9
15:20 – 16:40 Coffee and poster session
Posters: 4A-1…4A-21, 4B-1…4B-7, 5-1…5-9
16:40 – 17:40 Second afternoon session, Chair: Ted DeJong
5 FSPMs for problem solving in vegetation management …continued
3. An integrated and modular model for simulating and evaluating how canopy architecture
can help reduce fungicide applications
Christian Fournier, Christophe Pradal, Mariem Abichou, Bruno Andrieu, Marie-Odile
Bancal, Carole Bedos, Pierre Benoit, Camille Chambon, Eric Cotteux, Laure Mamy, Neil
Paveley, Valérie Pot, Sebastien Saint-Jean, Claire Richard, Carole Sinfort, Alexandra Ter
Halle, Eric Van Den Berg, Anne Sophie Walker, Corinne Robert
4. Weeds In Space – field-level epidemiology of herbicide resistance
David Thornby
5. Using functional-structural plant modeling to explore the response of cotton to
mepiquat chloride application and plant population density
Shenghao Gu, Jochem Evers, Lizhen Zhang, Lili Mao, Jan Vos, Zhaohu Li

18:00 – 20:00 Software demo session
1. OpenAlea 2.0: Architecture of an integrated modeling environment on the web
Julien Coste
2. SIMEO-ARCHIMED tools in AMAPstudio for creating virtual stands and simulating
radiative transfers (light interception, canopy reflectance and LiDAR backscattering…)
Jean Dauzat
3. An automated image-processing pipeline for high-throughput analysis of root
architecture in OpenAlea
Julien Diener, P. Nacry, C. Perin, A. Dievart, X. Draye, A. Gojon, C. Godin
4. Xplo: a software for plant architecture edition, visualisation, simulation
Sébastien Griffon
5. Extensions to the Interactive Modelling Platform – GroIMP
Yongzhi Ong
6. A novel ray tracer for diffuse glass in greenhouses
Pieter de Visser
7. TreeSketch: Interactive Procedural Modeling of Trees on a Tablet
Steven Longay
8. The VLAB software for Mac OS
Mikolaj Cieslak
Friday, 14 June 2013
8:30 – 9:20 Keynote talk
Challenges in Crop Modelling and possible contributions from Functional Structural
Plant Models
Frank A. Ewert
9:20 – 12:30 Morning session, Chair: Katrin Kahlen
4B Growth and development of plant communities
1. Plant structure in crop production: considerations on application of FSPM
Jan Vos, Jochem Bas Evers
2. Reparametrisation of Adel-wheat allows reducing the experimental effort to simulate
the 3D development of winter wheat
Mariem Abichou, Christian Fournier, Tino Dornbusch, Camille Chambon, Rim Baccar,
Jessica Bertheloot, Tiphaine Vidal, Corinne Robert, David Gouache, Bruno Andrieu
3. Perspectives for improving carbon and nitrogen allocation in forest models from stand
to global scale
Oskar Franklin, Peter M. van Bodegom
10:20 – 10:50 Coffee break
12:30 – 13:30 Lunch
4. Photosynthesis, Transpiration and LAI: scale effects of spatial patterns
Moritz Kupisch, Anja Stadler, Matthias Langensiepen, Frank Ewert
5. Plant diversity and drought
Magnus Lindh, Lai Zhang, Daniel Falster, Oskar Franklin, Mark Westoby, Åke Brännström
6. Quantifying the potential yield benefit of root traits in a target population of
environments
Mathieu Veyradier, Jack Christopher, Karine Chenu
7. X-Palm, a functional structural plant model for analysing temporal, genotypic and intertree
variability of oil palm growth and yield
Benoît Pallas, Jean-Christophe Soulié, Grégory Aguilar, Lauriane Rouan, Delphine Luquet
8. Modeling forest stand structure within a process-based model
Joannès Guillemot, Nicolas Delpierre, Patrick Vallet, Christophe François, Kamel
Soudani, Manuel Nicolas, Eric Dufrêne
13:30 – 15:20 Closing session
◦ Young scientists' panel: FSPM2013 and future. Moderator: Michaël Chelle
◦ Next meeting, FSPM Board, other issues
15:20 – 15:50 Farewell coffee

POSTERS
1A Modelling plant structure
1A-1 Andrés Valencia-Escobar, M.
Paulina Fernández, Diego J.
Celentano
Biomechanical modelation of Ravenala
madagascariensis petiole
1A-2 Dong Li, Mengzhen Kang Modeling and analyzing the topology
development of young michelia chapensis
1A-3 Florian Schöler, Jenny Balfer,
Volker Steinhage
Automated Parameter Estimation for a Plant
Architecture Model
1A-4 Fuping Lin, Dong Li Modeling the blade shape of landscape trees 1
1A-5 Hongxin Cao, Wenyu Zhang,
Weixing Zhang, Yan Liu, Yongxia
Liu, Jim Hanan, Yuli Chen, Yanbin
Yue, Zhiyou Zhang, Daokuo Ge
Biomass-based rapeseed (Brassica napus L.) leaf
geometric parameter model
1A-6 Jing Hua, MengZhen Kang Optimize Tree Shape: Targeting for Best Light
Interception
1A-7 Metadel Kassahun Abera,
Pieter Verboven, Thijs Defraeye,
maarten Hertog, Bart M Nicolai
1A-8 Tingting Qian, Shenglian Lu,
Chunjiang Zhao, Xinyu Guo
1B Reconstructing and observing plant structure
1B-1 Alexander S. Komarov, Elena V.
Zubkova, Maija Salemaa, Raisa
Mäkipää
1B-2 Christoph Stocker, Franz
Uhrmann, Oliver Scholz
1B-3 Dobrina Boltcheva, Eric Casella,
Rémy Cumont, Franck Hétroy
1B-4 Dong Li, Liyong Cao, Shihua
Cheng
A novel plant cell division algorithm based on
ellipse/ellipsoid fitting
Modeling Cucumber leaf orientation as growing
in heterogeneous canopy
Rank distributions and biomass partitioning of
plants
Inference of structural plant growth from
discrete samples
A spectral clustering approach of vegetation
components for describing plant topology and
geometry from terrestrial waveform LiDAR data
Modeling and analyzing rice canopies of
different cultivars and densities by 3D digitizing
method
1B-5 Douglas Cook, Margaret Julias The use of x-ray computed tomography for
creating computational models of corn stalks
and other plants: advantages, benefits, and
common challenges.
1B-6 Franz Uhrmann, Christian Hügel,
Sabine Paris, Oliver Scholz,
Michael Zollhöfer, Günther
Greiner
1B-7 Gabriel Roveda, Liz Patricia
Moreno Fonseca
1B-8 Guilhem Brunel, Philippe
Borianne, Marc Jaeger, Gérard
Subsol, Yves Caraglio
1B-9 Julien Diener, P. Nacry, C. Périn, A.
Dievart, X. Draye, F. Boudon, A.
Gaujon, C. Godin
A Model-based Approach to Extract Leaf
Features from 3D Scans
Root growth and distribution of gooseberry
(Physalis peruviana) under field conditions in the
Andean soil
Defining a reliability coefficient in an automated
method of identification of radial files in
microscopic images of gymnosperms
An automated image-processing pipeline for
high-throughput analysis of root architecture in
OpenAlea
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1B-10 Kiyoshi Umeki, Akira Kato Terrestrial LiDAR-based tree/stand model
that can simulate light interception and
photosynthesis of branches, individuals, and a
stand
1B-11 Pasi Raumonen, Eric Casella,
Mathias Disney, Markku
Åkerblom, Mikko Kaasalainen
1B-12 Seppe Rogge, Shiferaw Beyene,
Els Herremans, Thijs Defraeye,
Pieter Verboven, Bart Nicolai
1B-13 Thiago Teixeira Santos, Julio Akira
Ueda
1B-14 Tino Dornbusch, Olivier Michaud,
Christian Fankhauser
1B-15 Winfried Kurth, Katarzyna
Wasilczuk, Michael Henke,
Katarina Smolenova, Yongzhi Ong
2A Exchange and transport processes in plant
2A-1 Ansgar Bohmann, Andres
Chavarria-Krauser
2A-2 Beñat Olascoaga, Albert Porcar-
Castell
2A-3 Eero Nikinmaa, Risto Sievänen,
Jari Perttunen, Teemu Hölttä
2A-4 Helge Dzierzon, Alla N.
Seleznyova
2A-5 Inigo Auzmendi, Romeo Favreau,
David Da Silva, Theodore DeJong
2A-6 Johannes Müller, André
Eschenröder, Olaf Christen
2A-7 Juliane Claus, Ansgar Bohmann,
Andrés Chavarría
2A-8 Katrin Huber, Jan Vanderborght,
Mathieu Javaux, Natalie
Schroeder, Ian Dodd, Harry
Vereecken
2A-9 Marc Saudreau, Boris Adam,
Amélie Ezanic, Sylvain
Pincebourde
2A-10 Mikko Peltoniemi, Remko
Duursma, Belinda Medlyn
2A-11 Qingguo Wang, David H Fleisher,
Jong Ahn Chu, Jonathan Resop,
Dennis Timlin, V.R. Reddy
Fast automatic method for constructing
topologically and geometrically precise tree
models from TLS Data
A geometrical model generator for quasiaxisymmetric
fruit based on X-ray tomography
Automatic 3D plant reconstruction from
photographies, segmentation and classification
of leaves and internodes using clustering
Monitoring the diel growth of individual
Arabidopsis leaves using a laser scanning
approach
A Blender addon for the 3-d digitizer FASTRAK
for plant structure acquisition
A model of mechanics and gas exchange in a
neighborhood of a single stoma
A mechanistic model for the estimation of the
quantum yield of photochemistry based on light,
temperature, and chlorophyll a fluorescence
Simulated interaction between tree structure
and xylem and phloem transport in 3D tree
crowns using model LIGNUM
Integrating water transport into L-kiwi model
using an aspect-oriented approach
Integration of a mechanistic biochemical and
biophysical leaf gas exchange model in L-PEACH
Towards integrating primary C-N metabolism
and physiology of crop growth across different
plant scales: the ProNet-CN model – a multiscale
approach for functional-structural plant
modeling
Modelling zinc uptake and radial transport in
roots
Simulating the impact of (“long-distance”
or “root-to-shoot”) hormonal signaling and
non-uniform soil water distribution on plant
transpiration
Modelling Spatial and Temporal Leaf
Temperature Dynamics - A focus on the leaf
boundary layer
Hydraulic constraints influence the distribution
of canopy photosynthetic properties
Reliable estimation of parameters of the
Farquhar-Von Caemmer-Berry Biochemical
model cannot be obtained by fitting An/Ci curves
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2B Distribution of resources and growth in plants
2B-1 Aris Jansons, Juris Rieksts
Riekstins, Martins Zeps, Oskars
Krisans
Height increment formation of hybrid aspen:
empirical model
2B-2 Atsuhiro Iio Masting changes canopy structure, light
interception, and photosynthesis in Fagus
crenata
2B-3 Gabriel Roveda, Liz Patricia
Moreno-Fonseca
2B-4 Heikki Hänninen, Robin Lundell,
Olavi Junttila
The effect of low phosphorus on morphological
and physiological characters of gooseberry
plants (Physalis peruviana)
A fifty-year-old conceptual plant dormancy
model provides new insights into dynamic
phenology modelling
2B-5 Jan Hoogesteger A single tree basal area growth model 2
2B-6 Jessica Bertheloot, François
Barbier, Yves Gibon, Rachid
Boumaza, Soulaiman Sakr, Sabine
Demotes
2B-7 Lars Hellström, Linus Carlsson,
Åke Brännström
2B-8 María Paulina Fernández, Iván
Lillo
2B-9 Robin Lundell, Heikki Hänninen,
Timo Saarinen, Helena Åström
2B-10 Ross Edward McMurtrie, Roderick
C. Dewar
2B-11 Sabine Demotes-Mainard, Jessica
Bertheloot, Bruno Andrieu, Gaelle
Guéritaine, Lydie Huché-Thélier,
Vincent Guérin, Rachid Boumaza
3 Methods for FSPMs
3-1 Christophe Pradal, Julien Coste,
Frédérique Boudon, Christian
Fournier, Christophe Godin
3-2 Katarina Smolenova, Michael
Henke, Yongzhi Ong, Winfried
Kurth
3-3 Michael Henke, Katarína
Smoleňová, Yongzhi Ong,
Winfried Kurth
3-4 Qiong-Li Wu, Jessica Bertheloot,
Paul-Henry Cournède
3-5 Xing Gong, Thomas Corpetti,
Mengzhen Kang, Baogang Hu,
Laurence Hubert-Moy
Towards a FSPM of bud outgrowth for rosebush:
experimental analysis of sugar effect
Geometrically saturated growth and the pipe
model of tree form
Functional-structural modelling of tree and
wood formation: new parameters and relations
Functional overwintering types as basis for
modelling the overwintering of northern field
layer plants under climate warming
Patterns of carbon and nitrogen allocation in
trees predicted by a model of optimal plant
function
L-Rose: a model simulating organ expansion of
individual plants within a rose bush crop
OpenAlea 2.0: Architecture of an integrated
modeling environment on the web
Rule-based integration of LIGNUM into GroIMP 2
An extension of the graph-grammar based
simulator GroIMP for visual specification of plant
models using components
Global sensitivity analysis of the NEMA model
for its parameterization and biological diagnosis
Reconstruction of leaf area time series using
data assimilation on the GreenLab plant growth
model and remote sensing
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4A Structural development of plants and light environment
4A-1 Aarne Hovi, Ilkka Korpela Simulation of small footprint full waveform
LiDAR signals from seedling stand vegetation
using Monte Carlo ray tracing and statistical
models of 3D vegetation structure
4A-2 Anna Lintunen, Pekka Kaitaniemi,
Jari Perttunen, Risto Sievänen
4A-3 Benoit Pallas, Jérémie Lecoeur,
Karine Chenu, Hervé Rey, Frédéric
Gay, Angélique Christophe
4A-4 Cailian Lao, Zhaoli Xu, Yan Guo,
Yan Jin, Yuhong Yang
4A-5 Fabio Takeshi Matsunaga,
Miroslava Rakocevic, Jacques
Duílio Brancher
4A-6 Jean Dauzat, Sébastien Griffon,
Olivier Roupsard, Philippe Vaast,
Gustavo Rodrigues
4A-7 Julien Le Gall, Hervé Autret,
Didier Combes, Christophe
Renaud, Jessica Berthloot,
Nathalie Leduc, Bruno Andrieu,
Vincent Guérin, Michael Chelle,
Sabine Demotes-Mainard
4A-8 Junqi Zhu, Bruno Andrieu,
Vos Jan, wopke van der Werf,
Christian Fournier, Jochem B
Evers
4A-9 Loïc Nabil Tadrist, Emmanuel de
Langre, Marc Saudreau
4A-10 Lu Feng, Hervé Rey, Jean-Claude
Mailhol, Mengzhen Kang,
Philippe de Reffye
Between- and within-tree shading in mixed
stands: shoot-level simulation
A modeling approach to simulate the wholeplant
leaf expansion responses to light in three
annual dicotyledonous species
Characterization of the relationship between
quantity and quality of solar radiation in canopy
under contrasting sky conditions
Artificial neural networks in modeling of
environmental time series for yerba-mate
growth dynamics
Building the foundations of a Coffea arabica
FSPM
Evaluation of a photon tracing model and virtual
plants to simulate light distribution within a
canopy in a growth chamber
Simulating maize plasticity in leaf appearance
and size using regulation rules
How petiole flexibility changes light interception
at the tree scale
Concept and Calibration of Virtual Wheat
Including Stochastic Tillering
4A-11 Matti Mõttus, Miina Rautiainen The effect of canopy structure on photochemical
reflectance signal
4A-12 Miina Rautiainen, Matti Mõttus,
Lucia Yáñez-Rausell, Lucie
Homolová, Zbyněk Malenovský,
Michael E. Schaepman
4A-13 Miroslava Rakocevic, Fabio
Takeshi Matsunaga, Evelyne
Costes, Jonas Barbosa Tosti, Yann
Guédon, Letícia de Cássia Santin,
André Luiz Johann
A geometric model for scaling between needle
and shoot spectral albedos
Protocol for foliage modeling and light
partitioning in Coffea arabica
4A-14 Neil Andrew White, Jim Hanan A self-organising model of Macadamia with
application to pruning in orchards
4A-15 Olivier Taugourdeau, Jean-
Francois Barczi
4A-16 Pekka Kaitaniemi, Risto Sievänen,
Anna Lintunen, Jari Perttunen
Simulating the effect of extreme climatic events
on tree architecture with a minimal FSPM
Testing a radiation transmission model for stands
consisting of individual 3D Scots pine and silver
birch trees
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4A-17 Petr Lukeš, Pauline Stenberg,
Miina Rautiainen, Matti Mõttus,
Kalle M. Vanhatalo
4A-18 Raffaele Rani, Konrad
Abramowicz, Åke Brännström,
Daniel Falster
4A-19 Romain Barillot, Pierre Huynh,
Abraham J Escobar-Gutiérrez,
Didier Combes
4A-20 Titta Majasalmi, Miina
Rautiainen, Pauline Stenberg
4A-21 Weiliang Wen, Xinyu Guo,
Boxiang Xiao, Shenglian Lu
Variation in structural and optical properties of
sun exposed and shaded leaves: A model based
approach
Influence of Morphological Traits on Wood Litter
Production
L-Pea: an architectural model of pea (Pisum
sativum) development
4B Growth and development of plant communities
4B-1 Didier Combes, Isabelle Litrico,
Stéphane Grenier, Philippe Barre,
Abraham J. Escobar-Gutiérrez,
Gaëtan Louarn
4B-2 Kourosh Kabiri Koupaei, Eero
Nikinmaa, Pertti Hari
4B-3 Liang Tang, LeiLei Liu, Yonghui
Zhang, Dongxiang Gu, Weixing
Cao, Yan Zhu
4B-4 Tuomo Kalliokoski, Harri Mäkinen,
Annikki Mäkelä
4B-5 Vladimir Shanin, Maxim
Shashkov, Natalia Ivanova,
Svetlana Moskalenko, Maria
Bezrukova, Raisa Mäkipää,
Kapitolina Bobkova, Alexey
Manov, Alexander Komarov
4B-6 Xiujuan Wang, Mengzhen Kang,
Lili Yang, Baogui Zhang
4B-7 Gaëtan Louarn, Abraham
Escobar-Guttierrez, Didier
Combes
Modeled and measured fPAR in a boreal forest 3
Real-time calculation of total light interception in
crop canopy
Effects of defoliation intensity on the genetic
and phenotypic composition of virtual ray-grass
populations
Formation of crown structure in Scots pine trees 3
FSM-Rice: a simulation study on rice morphology
using functional–structural plant modeling
Parameterisation and evaluation of stand level
process-based PipeQual-model for Norway
spruce
The model of root spreading and belowground
competition in boreal mixed forests
Analysis of hybrid vigor for cucumber with
Functional-Structural model Greenlab
“Virtual grassland”: an OpenAlea package to
deal with herbaceous plant architecture and
grassland community dynamics
3
3
3
3
3
3
3
3
3
3

5 FSPMs for problem solving in vegetation management
5-1 Delphine Luquet, Matthieu Gouy,
Lauriane Rouan, Jean Francois
Martiné, Eric Gozé, Audrey
Thong-Chane, Jean Christophe
Soulié
5-2 Jari Perttunen, Risto Sievänen,
Tuula Piri
5-3 Karine Chenu, Al Doherty, Greg J.
Rebetzke, Scott C. Chapman
5-4 Maria Margarita Ramírez,
Fritz Oehl, Adrian Pérez, Alia
Rodriguez
5-5 María Margarita Ramírez,
Gabriel Roveda Hoyos, Cesar
Baquero Mestre, Judith Martinez-
Atencia, Braulio Gutierrez, Miguel
Rodriguez
5-6 Michaël Chelle, Christophe Godin,
Risto Sievänen, Jan Vos, Mathieu
Javaux, Gerhard Buck-Sorlin,
Hartmut Stützel, Ana Maria
Tarquis
5-7 Ruey Toh, Kunjithapatham
Dhileepan, Roger G. Shivas, Steve
W. Adkins, Jim Hanan
5-8 Xuejiao Wang, Jochem Evers,
Lizhen Zhang, Lili Mao, Xuebiao
Pan, Zhaohu Li
5-9 Yves Dumont, Alexandre
Mathieu, Serge Quilici
Model assisted phenotyping of the source-sink
relationships underlying the genetic diversity of
sugarcane productivity
Modelling the colonization of the decay fungus
Heterobasidion annosum in Scots pine (Pinus
sylvestris L.) root system
StressMaster: a web application for dynamic
modelling of the environment to assist in crop
improvement for drought adaptation
Arbuscular mycorrhizal fungi (AMF) diversity
obtained from gooseberry plantations (Physalis
peruviana) in the Colombian Andean region
Adaptation of timber plantations (Gmelina
arborea and Pachira quinata) with Arbuscular
Mycorrhizal Fungi in the Caribbean region,
Colombia
CyberPlantS: a European initiative towards
collaborative plant modeling
Modeling parthenium weed early canopy
architecture in response to environmental
factors and the impacts on biological control
activity of the summer rust
Cotton fiber quality determined by fruit position,
temperature and management
Mathematical Modelling of the biocontrol of
Rubus alceifolius, an invasive plant in Réunion
Island
3
3
3
3
3
3
3
3
3