CURRICULUM VITAE Mar 2011 1. PERSONAL DATA Name Safaai ...

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Application areas: • Maintenance scheduling • University/college/school timetabling • Staff/Employee scheduling (nurse, radiographer, film processor) • Bioinformatics – Sequence analysis • Bioinformatics - Genome/protein structure prediction/sequencing • Bioinformatics – Gene expression analysis • Bioinformatics – Bio Databases and data mining • Bioinformatics – Protein visualization • Early warning system/emergency and crisis management • Soil/Crop classification • Data mining and knowledge discovery Major finding: • Knowledge-based systems development techniques • Hybrid algorithms for planning and scheduling • Reactive system using case-based reasoning • Genome classification techniques • Secondary structure prediction techniques Technologies under development: • Intelligent agent architecture for reactive system • Mobile agent architecture and techniques • Agent development methodology • Reactive system/reactive scheduling using blackboard technology and Case-based reasoning • Distributed inventory management system • Genome analysis techniques • Protein function and structure prediction Research partners: • Royal Malaysian Navy • Lyonnaise Des Eaux/Equiventures Sdn Bhd • UMS (University Malaysia Sabah) • USM Hospital University –Kota Bahru • Medical Online Sdn Bhd (MSC Company) Major commercializeable products/systems developed • Radiology Information System (RIS) • Integrated Water Treatment Management Information System • Reactive university timetabling system • Factory Production Planning and Control System • Integrated Production and Accounting Management Information Systems (IPAMIS) 8.1 Current Research Projects – eScience a) In-silico cell factory for protein and biochemical production (Vit B) of Lactoccocus lactis – Vot 73744, Jan 2010 – Dec 2011, Grant MGI (Malaysian Genome Institute – MOSTI. 8.2 Completed Research Projects – IRPA and e-Science Software Engineering Macintosh HD:Users:macbook:Documents:safaai:cv:2011-Mar-20-CV-commercial-Safaai.doc 6
a) Tools for Component-Oriented Programming of Embedded Real-Time Software – 01-01-06-SF0232, Sept 07–Feb 09, Collaborator. b) Framework for Component-Based Software Engineering of Embedded Software in Resource Constrained Real-Time Systems – 01-01-06-SF0001, Dec 06–May 08, Collaborator. c) Development of Smart Monitoring System (Ad Hoc Sensor Networks for River Pollution and Electric Discharge Monitoring) – 01-01-06-SF0117, Dec 06-May 08, Project Leader. d) Design framework of agent software based on pattern, 01-01-06-SF0441, Dec 2007 – Jun 2009, Collaborator. Bioinformatics and Computational Biology e) The Development of a Tool using Bayesian Network Technique for Constructing Gene Network from Microarray Gene Expression Data – 01-01- 06-SF0300, Sept 07–Feb 09, Project Leader. f) The Development of Classification Tool Using Intelligent Techniques for Cancer Disease Classification from Microarray Gene Expression Data – 01-01- 06-SF0035, Dec 06-May 08, Project Leader. g) The Development of Feature Selection Tool for Classification of Microarrays Gene Expression Data Using Statistical and Machine Learning Techniques – 01-01-06-SF0068, Dec 06-Dec 08, Collaborator h) The Development of Automata Learning and Stochastic Modeling for Biosequence Analysis – 01-01-06-SF0230, Oct 07-Mar 09, Collaborator. i) Parallel Molecular Modelling Framework to Assess DNA Sequence Effects on Nucleosome Stability – 01-01-06-SF0401, Jul 07-Dec 08, Collaborator. j) Development of a Structural Bioinformatics Tool Using Intelligent Technique for Protein Secondary Structure Analysis – 01-01-06-SF0302, Aug 07-Jul 09, Collaborator. k) Protein structure prediction from amino acid sequence using artificial intelligence techniques – UTM IRPA 74017, Feb 01 – Jul 04, Project Leader. Planning and Scheduling l) The Development of Ontology and Problem-Solving Method for Dynamic Scheduling in Agile Manufacturing - 01-01-06-SF0309, Sept 07–Dec 08, Project Leader. m) The Development of Integrated Planning and Scheduling Framework for Dynamic and Reactive Environment of Complex Manufacturing Problem – 01- 01-06-SF0004, Dec 06-Jun 08, Collaborator n) The development of constraint agent for planning and scheduling – UTM IRPA 72288, Jan 00 – Jun 01, Project Leader. Macintosh HD:Users:macbook:Documents:safaai:cv:2011-Mar-20-CV-commercial-Safaai.doc 7
Page 1 and 2: 1. PERSONAL DATA CURRICULUM VITAE M
Page 3 and 4: Mac 02 - Jun 06 Information Technol
Page 5: 2005 - 2008 UTM committee on Resear
Page 9 and 10: ee) Development of Intelligent Deci
Page 11 and 12: Expression Data. International Jour
Page 13 and 14: 42. Safaai Deris, Omatu, S., Ohta,
Page 15 and 16: 9. Misman, M.F., Deris, S., Hashim,
Page 17 and 18: Japan 30. Mohd Saberi Mohamad, Sige
Page 19 and 20: Second Middle East Conference on He
Page 21 and 22: Dunedin, New Zealand, 24-28 Novembe
Page 23 and 24: 13. Suhaizan Kaiat, Safaai Deris, T
Page 25 and 26: 2. The development of pilot system
Page 27 and 28: 7 2008 - 2011 8 2008 - 2011 9 2007
Page 29 and 30: 11 2000 - 2004 12 1998 - 2003 1 200
Page 31 and 32: 11 1998 12 1998 M.Sc. (Comp. Sc.) -
Page 33 and 34: 15/07/93 - 16/07/93 03/05/93 - 29/0
Page 35 and 36: p) PhD Thesis (UPM), Waled Saeed Ab
Page 37 and 38: d) ASM Science Journal, Akademi Sai
Page 39: 25. OTHER SERVICES e) Assistant Tre

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