a Whole Genome Array Approach - Jacobs University

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Results and Discussion 3.3 Highly enantioselective sec-alkyl sulfatase activity of the marine planctomycete Rhodopirellula baltica shows retention of configuration Published in: Angewandte Chemie International Edition 44: 2 –4 (2005) Authors: Sabine R. Wallner, Marga Bauer, Chris Würdemann, Patricia Wecker, Frank Oliver Glöckner, and Kurt Faber Contribution: Selection of the media composition, Cell culturing and growth, Cell harvesting and storage 3.4 Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes Published in: The ISME Journal 1, 419-435 (2007) Authors: Dagmar Woebken, Hanno Teeling, Patricia Wecker, Alexandra Dumitriu, Ivaylo Kostadinov, Rudolf Amann, Edward F DeLong and Frank Oliver Glöckner Contribution: Microarray experiments and Data analysis 22
Results and Discussion 3.1 Transcriptional response of the model planctomycete Rhodopirellula baltica SH1 T to changing environmental conditions Authors: Patricia Wecker, Christine Klockow, Christian Quast, Andreas Ellrott, Phillip Langhammer, Jens Harder, and Frank Oliver Glöckner Manuscript submitted to BMC Genomics 23
Page 1: Ecological Aspects of the Marine Pl
Page 4 and 5: Background 3
Page 6 and 7: Background TABLE OF CONTENT 1 BACKG
Page 9 and 10: Background 1 BACKGROUND 1.1 Marine
Page 11 and 12: Background their nutritional specia
Page 13 and 14: Background rosettes. The latter are
Page 15 and 16: Background bacterial peptidoglycan
Page 17 and 18: Background 1.3 Further outcome of t
Page 19 and 20: Background 1.5 Principle of DNA mic
Page 21 and 22: Background Fig 4 Flowchart of a typ
Page 23 and 24: Background Finally, cluster data ca
Page 25 and 26: Research Aims 2 RESEARCH AIMS 2.1 T
Page 27 and 28: Research Aims Zobellia galactanivor
Page 29: Results and Discussion 3 RESULTS AN
Page 33 and 34: Results and Discussion Abstract Bac
Page 35 and 36: Results and Discussion In summary,
Page 37 and 38: Results and Discussion Specific res
Page 39 and 40: Results and Discussion biosynthesis
Page 41 and 42: Results and Discussion fosmid 3FN [
Page 43 and 44: Results and Discussion conserved hy
Page 45 and 46: Results and Discussion exposed by R
Page 47 and 48: Results and Discussion Whole Genome
Page 49 and 50: Results and Discussion experiments,
Page 51 and 52: Results and Discussion References 1
Page 53 and 54: Results and Discussion 31. Aspedon
Page 55 and 56: Results and Discussion Figure legen
Page 57 and 58: Results and Discussion Each column
Page 59 and 60: Results and Discussion TABLE 2 Shar
Page 61 and 62: Results and Discussion TABLE 3 Shar
Page 63 and 64: Results and Discussion 3.2 The Rhod
Page 65 and 66: Results and Discussion Abstract Bac
Page 67 and 68: Results and Discussion and CzcR - b
Page 69 and 70: Results and Discussion of the expon
Page 71 and 72: Results and Discussion In the follo
Page 73 and 74: Results and Discussion successful c
Page 75 and 76: Results and Discussion RB3577, RB52
Page 77 and 78: Results and Discussion Conclusions
Page 79 and 80: Results and Discussion A detailed d
Page 81 and 82:
Results and Discussion The setup of
Page 83 and 84:
Results and Discussion 23. Kumar A:
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Results and Discussion R4 R4 R2 R3
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Results and Discussion FIG 7 A) Flu
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Results and Discussion FIG 7 C) Flu
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Results and Discussion TABLE 2 Numb
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Results and Discussion TABLE 4 Pres
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Results and Discussion Additional f
Page 98 and 99:
Results and Discussion 3.3 Highly e
Page 100 and 101:
Summary 4 SUMMARY In 2003, the comp
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Summary R. baltica. Results show th
Page 104 and 105:
Summary 4.4 Fosmids of novel marine
Page 106 and 107:
Establishing of the Microarray Pipe
Page 108 and 109:
Contribution to the Research on Pla
Page 110 and 111:
Outlook However, there will still b
Page 112 and 113:
Reference Descamps, V., S. Colin, M
Page 114 and 115:
Reference König, E., H. Schlesner
Page 116 and 117:
Reference Rothberg, J. M. and J. H.
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Acknowledgement 9 ACKNOWLEDGEMENT
Page 120 and 121:
Annex 10 ANNEX 111
Page 122 and 123:
Heat Induced 10min ID Locus AA Nuc
Page 124 and 125:
7098 RB12746 294 885 Formamidopyrim
Page 126 and 127:
4326 RB7666 72 219 hypothetical pro
Page 128 and 129:
4555 RB8076 173 522 Holliday juncti
Page 130 and 131:
7197 RB12925 39 120 protein contain
Page 132 and 133:
Page 134 and 135:
Page 136 and 137:
5700 RB10219 128 387 ATP synthase e
Page 138 and 139:
Page 140 and 141:
5524 RB9907 433 1302 ISXo8 transpos
Page 142 and 143:
Cold repressed 10min ID Locus AA Nu
Page 144 and 145:
4428 RB7837 286 861 Ribosomal prote
Page 146 and 147:
Salinity Induced 10min ID Locus STA
Page 148 and 149:
1151 RB2186 1153993 1152692 433 130
Page 150 and 151:
622 RB1179 603998 604384 128 387 hy
Page 152 and 153:
Salinity repressed 10min ID Locus A
Page 154 and 155:
2432 RB4386 349 1050 2259814 225876
Page 156 and 157:
Cluster 1 Original row UID START ST
Page 158 and 159:
Page 160 and 161:
1124 RB1190_integrase 607131 608009
Page 162 and 163:
6247 RB8146_hypothetical protein 43
Page 164 and 165:
Page 166 and 167:
Cluster 15 Original row UID START S
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Cluster 22 Original row UID START S
Page 170 and 171:
The Rhodopirellula baltica life cyc
Page 172 and 173:
62hvs44h_up ID Locus Ratio AA Nuc P
Page 174 and 175:
82 h vs 62 h up ID Locus Ratio AA N
Page 176 and 177:
92h vs 82h up ID Locus Ratio Parent
Page 178 and 179:
240h vs 82h down ID Locus Ratio AA
Page 180 and 181:
3871 RB6856 -1.574937983 62 189 hyp
Page 182 and 183:
6606 RB11855 2.19926923 101 306 con
Page 184 and 185:
2008 RB3662 2.034633667 43 132 hypo
Page 186 and 187:
Cluster 3 Original row UID Start St
Page 188 and 189:
1339 RB1225_dipeptidyl peptidase IV
Page 190 and 191:
2860 RB2764_secreted protein contai
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Page 194 and 195:
Cluster 4 Original row UID Start St
Page 196 and 197:
Page 198 and 199:
Page 200 and 201:
3513 RB378_periplasmic nitrate redu
Page 202 and 203:
Cluster 13 Original row UID Start S
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